Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
PCDH9_chr13_66297834_67235336	66717478	AAAATATA others(3): Show AAAATATATAT	A A	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0065 a0001c0001t0003g0065	1	80	0.0125	-10	c.313 others(31): Show c.3139-86077_3139-86068delATATATATTT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66717480	AATATATA others(3): Show AATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG02738.hp1 HG03239.hp2 HG01175.hp1 HG02738.hp1 HG03239.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0004 a0001c0002t0002 a0001c0002t0004	a0001c0002t0002g0011 a0001c0002t0002g0016 a0001c0002t0004g0008 a0001c0002t0002g0011 a0001c0002t0002g0016 a0001c0002t0004g0008	3	80	0.0375	-10	c.313 others(31): Show c.3139-86079_3139-86070delATATATATAT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66730885	TTGTTTGT others(3): Show TTGTTTGTTTC	T T	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0067 a0001c0001t0001g0067	1	80	0.0125	-10	c.313 others(31): Show c.3139-99484_3139-99475delGAAACAAACA	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66747349	TCAAAACA others(3): Show TCAAAACAAAA	T T	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03471.hp1 HG03098.hp1 HG03471.hp1	a0001 a0007 a0001 a0007	a0001c0004 a0007c0008 a0001c0004 a0007c0008	a0001c0004t0006 a0007c0008t0005 a0001c0004t0006 a0007c0008t0005	a0001c0004t0006g0040 a0007c0008t0005g0044 a0001c0004t0006g0040 a0007c0008t0005g0044	2	80	0.0250	-10	c.313 others(33): Show c.3139-115948_3139-115939delTTTTGTTTTG	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66783341	AAAGTGAC others(3): Show AAAGTGACTGG	A A	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG02145.hp2 HG03209.hp2 HG01167.hp1 HG02145.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0008 a0001c0001t0019 a0001c0011t0007 a0001c0001t0008 a0001c0001t0019 a0001c0011t0007	a0001c0001t0008g0079 a0001c0001t0019g0075 a0001c0011t0007g0002 a0001c0001t0008g0079 a0001c0001t0019g0075 a0001c0011t0007g0002	3	80	0.0375	-10	c.313 others(33): Show c.3138+120153_3138+120162delCCAGTCACTT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66788682	CCAAGTCA others(3): Show CCAAGTCAGTA	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0073 a0001c0001t0001g0073	1	80	0.0125	-10	c.313 others(33): Show c.3138+114812_3138+114821delTACTGACTTG	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66824303	GTATATAT others(3): Show GTATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG03209.hp1 HG03239.hp2 others(1): Show HG00735.hp2 HG03209.hp1 HG03239.hp2 NA19030.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0002 a0002c0005 others(1): Show a0001c0001 a0001c0002 a0002c0005 a0005c0012	a0001c0001t0003 a0001c0002t0002 a0002c0005t0002 others(1): Show a0001c0001t0003 a0001c0002t0002 a0002c0005t0002 a0005c0012t0004	a0001c0001t0003g0054 a0001c0002t0002g0016 a0002c0005t0002g0006 others(1): Show a0001c0001t0003g0054 a0001c0002t0002g0016 a0002c0005t0002g0006 a0005c0012t0004g0004	4	80	0.0500	-10	c.313 others(31): Show c.3138+79191_3138+79200delTATATATATA	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66824651	GATATATA others(3): Show GATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01167.hp2 HG03471.hp1 HG00741.hp2 HG01167.hp2 HG03471.hp1	a0001 a0001	a0001c0003 a0001c0004 a0001c0003 a0001c0004	a0001c0003t0001 a0001c0003t0005 a0001c0004t0006 a0001c0003t0001 a0001c0003t0005 a0001c0004t0006	a0001c0003t0001g0031 a0001c0003t0005g0045 a0001c0004t0006g0040 a0001c0003t0001g0031 a0001c0003t0005g0045 a0001c0004t0006g0040	3	80	0.0375	-10	c.313 others(31): Show c.3138+78843_3138+78852delATATATATAT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66849425	AATATATG others(3): Show AATATATGACT	A A	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01884.hp1 HG02630.hp1 others(3): Show HG01175.hp2 HG01884.hp1 HG02630.hp1 HG03041.hp2 HG03195.hp2 HG03540.hp2	a0001 a0004 a0006 a0001 a0004 a0006	a0001c0001 a0001c0002 a0001c0015 others(2): Show a0001c0001 a0001c0002 a0001c0015 a0004c0009 a0006c0016	a0001c0001t0006 a0001c0002t0004 a0001c0002t0009 others(3): Show a0001c0001t0006 a0001c0002t0004 a0001c0002t0009 a0001c0015t0001 a0004c0009t0002 a0006c0016t0001	a0001c0001t0006g0063 a0001c0002t0004g0020 a0001c0002t0009g0014 others(3): Show a0001c0001t0006g0063 a0001c0002t0004g0020 a0001c0002t0009g0014 a0001c0015t0001g0048 a0004c0009t0002g0003 a0006c0016t0001g0049	6	80	0.0750	-10	c.313 others(31): Show c.3138+54069_3138+54078delAGTCATATAT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66851575	TCACACAC others(3): Show TCACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01884.hp1 HG03041.hp2 others(2): Show HG01175.hp2 HG01884.hp1 HG03041.hp2 HG03195.hp2 HG03540.hp2	a0001 a0004 a0006 a0001 a0004 a0006	a0001c0001 a0001c0002 a0001c0015 others(2): Show a0001c0001 a0001c0002 a0001c0015 a0004c0009 a0006c0016	a0001c0001t0006 a0001c0002t0009 a0001c0015t0001 others(2): Show a0001c0001t0006 a0001c0002t0009 a0001c0015t0001 a0004c0009t0002 a0006c0016t0001	a0001c0001t0006g0063 a0001c0002t0009g0014 a0001c0015t0001g0048 others(2): Show a0001c0001t0006g0063 a0001c0002t0009g0014 a0001c0015t0001g0048 a0004c0009t0002g0003 a0006c0016t0001g0049	5	80	0.0625	-10	c.313 others(31): Show c.3138+51919_3138+51928delTGTGTGTGTG	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66887034	AACACACA others(3): Show AACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01261.hp1 HG01978.hp1 others(4): Show HG00642.hp1 HG01261.hp1 HG01978.hp1 HG02738.hp1 HG03041.hp1 HG03486.hp2 NA19043.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0010 a0001c0001 a0001c0002 a0003c0010	a0001c0001t0001 a0001c0001t0006 a0001c0002t0002 others(2): Show a0001c0001t0001 a0001c0001t0006 a0001c0002t0002 a0001c0002t0004 a0003c0010t0007	a0001c0001t0001g0057 a0001c0001t0001g0067 a0001c0001t0006g0061 others(4): Show a0001c0001t0001g0057 a0001c0001t0001g0067 a0001c0001t0006g0061 a0001c0002t0002g0011 a0001c0002t0002g0018 a0001c0002t0004g0012 a0003c0010t0007g0001	7	80	0.0875	-10	c.313 others(31): Show c.3138+16460_3138+16469delGTGTGTGTGT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66890448	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02738.hp2 HG02738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0056 a0001c0001t0003g0056	1	80	0.0125	-10	c.313 others(31): Show c.3138+13046_3138+13055delAAAAAAAAAA	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66939424	ATGTGTGT others(3): Show ATGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01167.hp2 HG01496.hp1 others(10): Show HG00741.hp2 HG01167.hp2 HG01496.hp1 HG02145.hp2 HG02630.hp1 HG02738.hp1 HG03209.hp1 HG03209.hp2 HG03471.hp1 HG03471.hp2 HG03927.hp2 NA18522.hp1 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0011 a0002c0005	a0001c0001t0003 a0001c0001t0008 a0001c0001t0019 others(9): Show a0001c0001t0003 a0001c0001t0008 a0001c0001t0019 a0001c0002t0002 a0001c0002t0004 a0001c0003t0001 a0001c0003t0003 a0001c0003t0005 a0001c0004t0001 a0001c0004t0006 a0001c0011t0007 a0002c0005t0002	a0001c0001t0003g0065 a0001c0001t0008g0078 a0001c0001t0019g0075 others(10): Show a0001c0001t0003g0065 a0001c0001t0008g0078 a0001c0001t0019g0075 a0001c0002t0002g0011 a0001c0002t0002g0013 a0001c0002t0004g0020 a0001c0003t0001g0031 a0001c0003t0003g0046 a0001c0003t0005g0045 a0001c0004t0001g0041 a0001c0004t0006g0040 a0001c0011t0007g0002 a0002c0005t0002g0006	13	80	0.1625	-10	c.303 others(31): Show c.3037-35829_3037-35820delCACACACACA	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	2/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	66980715	CCTGTTTT others(3): Show CCTGTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02809.hp1 HG03209.hp2 others(2): Show HG02145.hp2 HG02809.hp1 HG03209.hp2 HG03486.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0011 a0001c0001 a0001c0002 a0001c0011	a0001c0001t0001 a0001c0001t0006 a0001c0001t0019 others(2): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0019 a0001c0002t0003 a0001c0011t0007	a0001c0001t0001g0060 a0001c0001t0006g0061 a0001c0001t0019g0075 others(2): Show a0001c0001t0001g0060 a0001c0001t0006g0061 a0001c0001t0019g0075 a0001c0002t0003g0047 a0001c0011t0007g0002	5	80	0.0625	-10	c.303 others(31): Show c.3037-77120_3037-77111delAAAAAAACAG	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	2/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	67022106	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00735.hp1 HG01496.hp1 others(2): Show HG00099.hp2 HG00735.hp1 HG01496.hp1 HG02970.hp1 HG03239.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0002 a0001c0003t0003 a0001c0003t0010 a0001c0002t0002 a0001c0003t0003 a0001c0003t0010	a0001c0002t0002g0016 a0001c0002t0002g0017 a0001c0003t0003g0032 others(2): Show a0001c0002t0002g0016 a0001c0002t0002g0017 a0001c0003t0003g0032 a0001c0003t0003g0046 a0001c0003t0010g0025	5	80	0.0625	-10	c.303 others(33): Show c.3037-118511_3037-118502delAAAAAAAAAA	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	2/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	67073902	CTTTAAGA others(3): Show CTTTAAGAGGT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG02165.hp2 HG03239.hp1 others(1): Show HG00438.hp1 HG02165.hp2 HG03239.hp1 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0014	a0001c0001t0001 a0001c0002t0004 a0001c0003t0001 others(1): Show a0001c0001t0001 a0001c0002t0004 a0001c0003t0001 a0001c0014t0004	a0001c0001t0001g0066 a0001c0002t0004g0022 a0001c0003t0001g0037 others(1): Show a0001c0001t0001g0066 a0001c0002t0004g0022 a0001c0003t0001g0037 a0001c0014t0004g0024	4	80	0.0500	-10	c.303 others(33): Show c.3036+151493_3036+151502delACCTCTTAAA	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	2/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	67084993	AAAAAATA others(3): Show AAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00735.hp1 HG02738.hp1 HG00642.hp2 HG00735.hp1 HG02738.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0002t0002 a0001c0003t0003 a0001c0001t0001 a0001c0002t0002 a0001c0003t0003	a0001c0001t0001g0073 a0001c0002t0002g0011 a0001c0003t0003g0032 a0001c0001t0001g0073 a0001c0002t0002g0011 a0001c0003t0003g0032	3	80	0.0375	-10	c.303 others(33): Show c.3036+140402_3036+140411delATATATTTTT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	2/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	67084995	AAAATATA others(3): Show AAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0057 a0001c0001t0001g0057	1	80	0.0125	-10	c.303 others(33): Show c.3036+140400_3036+140409delATATATATTT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	2/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	67213206	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00735.hp2 HG01109.hp1 others(8): Show HG00642.hp1 HG00735.hp2 HG01109.hp1 HG01884.hp2 HG02132.hp2 HG02165.hp2 HG02717.hp1 HG02738.hp2 HG03927.hp1 NA18950.hp2 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0003 a0001c0001t0015 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0015 a0001c0003t0001 a0001c0003t0005	a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 others(8): Show a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0003g0054 a0001c0001t0003g0056 a0001c0001t0003g0072 a0001c0001t0015g0050 a0001c0003t0001g0037 a0001c0003t0005g0036	11	80	0.1375	-10	c.303 others(31): Show c.3036+12189_3036+12198delTTTTTTTTTT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	2/4		chr13	TogoVar
PCDH9_chr13_66297834_67235336	67213229	AAAAAAAA others(3): Show AAAAAAAAAAG	A A	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG06807.hp2 HG03486.hp1 HG06807.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0002 a0002c0005t0002	a0002c0005t0002g0005 a0002c0005t0002g0007 a0002c0005t0002g0005 a0002c0005t0002g0007	2	80	0.0250	-10	c.303 others(31): Show c.3036+12166_3036+12175delCTTTTTTTTT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	2/4		chr13	TogoVar
PCDHA10_chr5_140850897_141017347	140924901	AAAAATAA others(3): Show AAAAATAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02615.hp2 HG02738.hp2 others(1): Show HG02280.hp2 HG02615.hp2 HG02738.hp2 HG03516.hp2	a0002 a0003 a0002 a0003	a0002c0002 a0003c0011 a0002c0002 a0003c0011	a0002c0002t0015 a0003c0011t0002 a0003c0011t0005 a0002c0002t0015 a0003c0011t0002 a0003c0011t0005	a0002c0002t0015g0110 a0003c0011t0002g0061 a0003c0011t0005g0062 others(1): Show a0002c0002t0015g0110 a0003c0011t0002g0061 a0003c0011t0005g0062 a0003c0011t0005g0063	4	260	0.0154	-10	c.238 others(31): Show c.2389-54018_2389-54009delTAAAATAAAA	PCDHA10	ENSG00000250120.8	transcript	ENST00000307360.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA10_chr5_140850897_141017347	141000387	CTCTCTCT others(3): Show CTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0219 a0001c0001t0006g0219	1	260	0.0039	-10	c.253 others(29): Show c.2537-9238_2537-9229delCTCTCTCTAT	PCDHA10	ENSG00000250120.8	transcript	ENST00000307360.6	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA10_chr5_140850897_141017347	141000389	CTCTCTCT others(3): Show CTCTCTCTATA	C C	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0220 a0001c0001t0006g0220	1	260	0.0039	-10	c.253 others(29): Show c.2537-9236_2537-9227delCTCTCTATAT	PCDHA10	ENSG00000250120.8	transcript	ENST00000307360.6	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	140924901	AAAAATAA others(3): Show AAAAATAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02615.hp1 HG02738.hp2 others(1): Show HG02280.hp2 HG02615.hp1 HG02738.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0005 a0001c0002t0015 a0001c0001t0002 a0001c0001t0005 a0001c0002t0015	a0001c0001t0002g0126 a0001c0001t0005g0124 a0001c0001t0005g0125 others(1): Show a0001c0001t0002g0126 a0001c0001t0005g0124 a0001c0001t0005g0125 a0001c0002t0015g0178	4	260	0.0154	-10	c.239 others(31): Show c.2391+53437_2391+53446delTAAAATAAAA	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	141000361	GTCTCTCT others(3): Show GTCTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0001 a0003c0005t0001	a0003c0005t0001g0098 a0003c0005t0001g0098	1	260	0.0039	-10	c.254 others(29): Show c.2540-9240_2540-9231delCTCTCTCTCT	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	141000387	CTCTCTCT others(3): Show CTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0090 a0001c0001t0006g0090	1	260	0.0039	-10	c.254 others(29): Show c.2540-9238_2540-9229delCTCTCTCTAT	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	141000389	CTCTCTCT others(3): Show CTCTCTCTATA	C C	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0091 a0001c0001t0006g0091	1	260	0.0039	-10	c.254 others(29): Show c.2540-9236_2540-9227delCTCTCTATAT	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140924901	AAAAATAA others(3): Show AAAAATAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02615.hp1 HG02738.hp2 others(1): Show HG02280.hp2 HG02615.hp1 HG02738.hp2 HG03516.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0015 a0001c0004t0002 a0001c0004t0005 a0001c0002t0015 a0001c0004t0002 a0001c0004t0005	a0001c0002t0015g0169 a0001c0004t0002g0120 a0001c0004t0005g0118 others(1): Show a0001c0002t0015g0169 a0001c0004t0002g0120 a0001c0004t0005g0118 a0001c0004t0005g0119	4	260	0.0154	-10	c.236 others(31): Show c.2367+47092_2367+47101delTAAAATAAAA	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	141000361	GTCTCTCT others(3): Show GTCTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0239 a0001c0001t0001g0239	1	260	0.0039	-10	c.251 others(29): Show c.2516-9240_2516-9231delCTCTCTCTCT	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	141000387	CTCTCTCT others(3): Show CTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0006 a0003c0006t0006	a0003c0006t0006g0087 a0003c0006t0006g0087	1	260	0.0039	-10	c.251 others(29): Show c.2516-9238_2516-9229delCTCTCTCTAT	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	141000389	CTCTCTCT others(3): Show CTCTCTCTATA	C C	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0006 a0003c0006t0006	a0003c0006t0006g0089 a0003c0006t0006g0089	1	260	0.0039	-10	c.251 others(29): Show c.2516-9236_2516-9227delCTCTCTATAT	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140924901	AAAAATAA others(3): Show AAAAATAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02615.hp2 HG02738.hp1 others(1): Show HG02280.hp2 HG02615.hp2 HG02738.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0014 a0001c0001t0002 a0001c0001t0006 a0001c0001t0014	a0001c0001t0002g0003 a0001c0001t0006g0001 a0001c0001t0006g0002 others(1): Show a0001c0001t0002g0003 a0001c0001t0006g0001 a0001c0001t0006g0002 a0001c0001t0014g0182	4	260	0.0154	-10	c.239 others(31): Show c.2394+40269_2394+40278delTAAAATAAAA	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	141000387	CTCTCTCT others(3): Show CTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0095 a0001c0002t0007g0095	1	260	0.0039	-10	c.254 others(29): Show c.2543-9238_2543-9229delCTCTCTCTAT	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	141000389	CTCTCTCT others(3): Show CTCTCTCTATA	C C	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0098 a0001c0002t0007g0098	1	260	0.0039	-10	c.254 others(29): Show c.2543-9236_2543-9227delCTCTCTATAT	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140831520	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0007 a0002c0002t0007	a0002c0002t0007g0174 a0002c0002t0007g0174	1	200	0.0050	-10	c.239 others(31): Show c.2394+42851_2394+42860delTTTTTTTTTT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140838075	ATAGTGTG others(3): Show ATAGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00642.hp1 HG00673.hp1 others(21): Show HG00621.hp1 HG00642.hp1 HG00673.hp1 HG01516.hp1 HG01517.hp2 HG02145.hp2 HG02257.hp2 HG02280.hp2 HG02486.hp2 HG02630.hp2 HG02647.hp2 HG02723.hp1 HG02965.hp1 HG03130.hp1 HG03195.hp1 HG03225.hp2 HG03471.hp1 HG03516.hp1 HG03579.hp1 HG03704.hp1 NA18960.hp2 NA18966.hp2 NA18975.hp1 NA19091.hp1	a0001 a0004 a0006 a0001 a0004 a0006	a0001c0001 a0001c0017 a0004c0004 others(1): Show a0001c0001 a0001c0017 a0004c0004 a0006c0019	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0008 a0001c0017t0001 a0004c0004t0001 a0006c0019t0001	a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0010 others(21): Show a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0026 a0001c0001t0001g0045 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0061 a0001c0001t0001g0081 a0001c0001t0001g0087 a0001c0001t0002g0052 a0001c0001t0003g0075 a0001c0001t0003g0086 a0001c0001t0007g0082 a0001c0001t0008g0059 a0001c0017t0001g0014 a0004c0004t0001g0098 a0004c0004t0001g0099 a0006c0019t0001g0188	24	200	0.1200	-10	c.239 others(31): Show c.2394+49392_2394+49401delTAGTGTGTGT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140838077	AGTGTGTG others(3): Show AGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG02055.hp1 HG02129.hp1 others(3): Show HG01993.hp2 HG02055.hp1 HG02129.hp1 HG02647.hp1 HG02897.hp1 NA19043.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0007 a0002c0002t0001 a0002c0002t0007	a0002c0002t0001g0116 a0002c0002t0001g0117 a0002c0002t0001g0120 others(3): Show a0002c0002t0001g0116 a0002c0002t0001g0117 a0002c0002t0001g0120 a0002c0002t0001g0126 a0002c0002t0001g0157 a0002c0002t0007g0174	6	200	0.0300	-10	c.239 others(31): Show c.2394+49438_2394+49447delGTGTGTGTGT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140924901	AAAAATAA others(3): Show AAAAATAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02615.hp1 HG02738.hp2 others(1): Show HG02280.hp1 HG02615.hp1 HG02738.hp2 HG03516.hp2	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0006 a0002c0002t0014 a0003c0003t0002 others(1): Show a0002c0002t0006 a0002c0002t0014 a0003c0003t0002 a0003c0003t0006	a0002c0002t0006g0103 a0002c0002t0014g0178 a0003c0003t0002g0194 others(1): Show a0002c0002t0006g0103 a0002c0002t0014g0178 a0003c0003t0002g0194 a0003c0003t0006g0193	4	200	0.0200	-10	c.239 others(31): Show c.2395-54018_2395-54009delTAAAATAAAA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	141000361	GTCTCTCT others(3): Show GTCTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	200	0.0050	-10	c.254 others(29): Show c.2543-9240_2543-9231delCTCTCTCTCT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	141000387	CTCTCTCT others(3): Show CTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0197 a0002c0002t0005g0197	1	200	0.0050	-10	c.254 others(29): Show c.2543-9238_2543-9229delCTCTCTCTAT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	141000389	CTCTCTCT others(3): Show CTCTCTCTATA	C C	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0200 a0002c0002t0005g0200	1	200	0.0050	-10	c.254 others(29): Show c.2543-9236_2543-9227delCTCTCTATAT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140831520	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0002 a0002	a0002c0016 a0002c0016	a0002c0016t0012 a0002c0016t0012	a0002c0016t0012g0135 a0002c0016t0012g0135	1	202	0.0050	-10	c.238 others(31): Show c.2388+34183_2388+34192delTTTTTTTTTT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140838075	ATAGTGTG others(3): Show ATAGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG00642.hp1 HG00673.hp1 others(20): Show HG00621.hp2 HG00642.hp1 HG00673.hp1 HG01516.hp2 HG01517.hp2 HG02145.hp1 HG02257.hp2 HG02280.hp2 HG02486.hp2 HG02630.hp1 HG02647.hp1 HG02723.hp2 HG02965.hp2 HG03130.hp1 HG03225.hp1 HG03471.hp2 HG03516.hp2 HG03579.hp2 HG03704.hp2 NA18960.hp2 NA18966.hp2 NA18975.hp1 NA19091.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0003c0003t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 others(20): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0022 a0001c0001t0001g0043 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0050 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0062 a0001c0001t0001g0103 a0001c0001t0001g0199 a0001c0001t0002g0051 a0001c0001t0003g0104 a0001c0001t0003g0198 a0001c0001t0007g0060 a0003c0003t0001g0068	23	202	0.1139	-10	c.238 others(31): Show c.2388+40724_2388+40733delTAGTGTGTGT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140838077	AGTGTGTG others(3): Show AGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01993.hp1 HG02055.hp2 HG02129.hp2 others(3): Show HG01993.hp1 HG02055.hp2 HG02129.hp2 HG02647.hp2 HG02897.hp2 NA19043.hp1	a0002 a0002	a0002c0002 a0002c0016 a0002c0002 a0002c0016	a0002c0002t0001 a0002c0016t0012 a0002c0002t0001 a0002c0016t0012	a0002c0002t0001g0126 a0002c0002t0001g0127 a0002c0002t0001g0130 others(3): Show a0002c0002t0001g0126 a0002c0002t0001g0127 a0002c0002t0001g0130 a0002c0002t0001g0137 a0002c0002t0001g0171 a0002c0016t0012g0135	6	202	0.0297	-10	c.238 others(31): Show c.2388+40770_2388+40779delGTGTGTGTGT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140924901	AAAAATAA others(3): Show AAAAATAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02615.hp1 HG02738.hp2 others(1): Show HG02280.hp1 HG02615.hp1 HG02738.hp2 HG03516.hp1	a0003 a0004 a0005 a0003 a0004 a0005	a0003c0003 a0004c0007 a0005c0018 a0003c0003 a0004c0007 a0005c0018	a0003c0003t0005 a0004c0007t0002 a0004c0007t0005 others(1): Show a0003c0003t0005 a0004c0007t0002 a0004c0007t0005 a0005c0018t0013	a0003c0003t0005g0196 a0004c0007t0002g0202 a0004c0007t0005g0201 others(1): Show a0003c0003t0005g0196 a0004c0007t0002g0202 a0004c0007t0005g0201 a0005c0018t0013g0191	4	202	0.0198	-10	c.238 others(31): Show c.2389-54018_2389-54009delTAAAATAAAA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	141000361	GTCTCTCT others(3): Show GTCTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0001 a0006c0006t0001	a0006c0006t0001g0094 a0006c0006t0001g0094	1	202	0.0050	-10	c.253 others(29): Show c.2537-9240_2537-9231delCTCTCTCTCT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	141000387	CTCTCTCT others(3): Show CTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0006 a0003c0003t0006	a0003c0003t0006g0071 a0003c0003t0006g0071	1	202	0.0050	-10	c.253 others(29): Show c.2537-9238_2537-9229delCTCTCTCTAT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	141000389	CTCTCTCT others(3): Show CTCTCTCTATA	C C	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0003 a0003	a0003c0013 a0003c0013	a0003c0013t0006 a0003c0013t0006	a0003c0013t0006g0069 a0003c0013t0006g0069	1	202	0.0050	-10	c.253 others(29): Show c.2537-9236_2537-9227delCTCTCTATAT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140831520	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0014 a0002c0002t0014	a0002c0002t0014g0118 a0002c0002t0014g0118	1	208	0.0048	-10	c.239 others(31): Show c.2394+27944_2394+27953delTTTTTTTTTT	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140838075	ATAGTGTG others(3): Show ATAGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG00642.hp1 HG00673.hp1 others(22): Show HG00621.hp2 HG00642.hp1 HG00673.hp1 HG01516.hp1 HG01517.hp2 HG02145.hp1 HG02257.hp2 HG02280.hp2 HG02486.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp2 HG02965.hp2 HG03130.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp2 HG03516.hp2 HG03579.hp1 HG03704.hp1 NA18960.hp2 NA18966.hp2 NA18975.hp2 NA19091.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0008 a0003c0005t0001	a0001c0001t0001g0008 a0001c0001t0001g0024 a0001c0001t0001g0025 others(22): Show a0001c0001t0001g0008 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0047 a0001c0001t0001g0068 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0076 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0003g0007 a0001c0001t0003g0084 a0001c0001t0006g0032 a0001c0001t0006g0071 a0001c0001t0006g0077 a0001c0001t0008g0011 a0003c0005t0001g0194	25	208	0.1202	-10	c.239 others(31): Show c.2394+34485_2394+34494delTAGTGTGTGT	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		chr5	TogoVar

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