Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PTK7_chr6_43071314_43166715	43118657	CTCTATAT others(3): Show CTCTATATATA	C C	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG00741.hp2 HG01255.hp1 others(5): Show HG00741.hp1 HG00741.hp2 HG01255.hp1 HG01261.hp2 HG02572.hp2 HG02897.hp2 HG03139.hp2 HG04184.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0017 others(1): Show a0001c0001 a0001c0002 a0001c0017 a0003c0003	a0001c0001t0001 a0001c0002t0001 a0001c0017t0001 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0017t0001 a0003c0003t0002	a0001c0001t0001g0166 a0001c0001t0001g0205 a0001c0002t0001g0074 others(5): Show a0001c0001t0001g0166 a0001c0001t0001g0205 a0001c0002t0001g0074 a0001c0002t0001g0140 a0001c0002t0001g0144 a0001c0002t0001g0165 a0001c0017t0001g0232 a0003c0003t0002g0070	8	272	0.0294	-10	c.80- others(27): Show c.80-10318_80-10309delCTATATATAT	PTK7	ENSG00000112655.16	transcript	ENST00000230419.9	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
PTK7_chr6_43071314_43166715	43118659	CTATATAT others(3): Show CTATATATATA	C C	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0139 a0001c0002t0004g0139	1	272	0.0037	-10	c.80- others(27): Show c.80-10298_80-10289delATATATATAT	PTK7	ENSG00000112655.16	transcript	ENST00000230419.9	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
PTK7_chr6_43071314_43166715	43131029	TCACACAC others(3): Show TCACACACACA	T T	intron_variant intron_variant	MODIFIER	NA18956.hp2 NA18956.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0057 a0001c0001t0002g0057	1	272	0.0037	-10	c.812 others(25): Show c.812+408_812+417delACACACACAC	PTK7	ENSG00000112655.16	transcript	ENST00000230419.9	protein_coding	5/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
PTK7_chr6_43071314_43166715	43150807	TTTTTTTT others(3): Show TTTTTTTTTTC	T T	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02717.hp2 HG04204.hp1 HG00639.hp2 HG02717.hp2 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0006 a0001c0001t0002g0023 a0001c0001t0002g0029 a0001c0001t0001g0006 a0001c0001t0002g0023 a0001c0001t0002g0029	3	272	0.0110	-10	c.272 others(29): Show c.2721+4110_2721+4119delTTTTTTTTTC	PTK7	ENSG00000112655.16	transcript	ENST00000230419.9	protein_coding	17/19			chr6	TogoVar
PTK7_chr6_43071314_43166715	43152734	TTTATGTT others(3): Show TTTATGTTATG	T T	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01169.hp1 HG01346.hp2 others(17): Show HG01071.hp1 HG01169.hp1 HG01346.hp2 HG02135.hp2 HG02258.hp2 HG02615.hp2 HG02717.hp2 HG02922.hp1 HG02965.hp1 HG02970.hp2 HG03130.hp2 HG03195.hp2 HG03540.hp1 HG04115.hp2 NA18522.hp2 NA18906.hp2 NA19030.hp2 NA19043.hp2 NA19080.hp1 NA19240.hp1	a0001 a0003 a0007 a0001 a0003 a0007	a0001c0001 a0001c0002 a0001c0006 others(2): Show a0001c0001 a0001c0002 a0001c0006 a0003c0003 a0007c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0006t0001 a0003c0003t0002 a0007c0020t0006	a0001c0001t0001g0006 a0001c0001t0001g0160 a0001c0001t0001g0193 others(17): Show a0001c0001t0001g0006 a0001c0001t0001g0160 a0001c0001t0001g0193 a0001c0001t0002g0175 a0001c0001t0002g0222 a0001c0001t0002g0223 a0001c0001t0002g0224 a0001c0001t0002g0242 a0001c0001t0004g0236 a0001c0002t0001g0102 a0001c0002t0001g0252 a0001c0002t0002g0026 a0001c0002t0002g0231 a0001c0002t0003g0147 a0001c0002t0003g0149 a0001c0006t0001g0084 a0003c0003t0002g0162 a0003c0003t0002g0163 a0003c0003t0002g0178 a0007c0020t0006g0226	20	272	0.0735	-10	c.272 others(29): Show c.2722-6031_2722-6022delTATGTTATGT	PTK7	ENSG00000112655.16	transcript	ENST00000230419.9	protein_coding	17/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
PTK7_chr6_43071314_43166715	43157326	CTATATAT others(3): Show CTATATATATA	C C	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00597.hp2 HG00609.hp1 others(24): Show HG00323.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp2 HG00733.hp1 HG01081.hp1 HG01261.hp1 HG01993.hp1 HG02015.hp2 HG02083.hp2 HG02818.hp1 NA18950.hp1 NA18951.hp2 NA18961.hp2 NA18968.hp2 NA18978.hp1 NA18982.hp2 NA18992.hp1 NA18995.hp2 NA18999.hp2 NA19002.hp2 NA19011.hp2 NA19065.hp2 NA19070.hp2 NA19077.hp2 NA19086.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0009 others(2): Show a0001c0001 a0001c0002 a0001c0009 a0001c0010 a0005c0011	a0001c0001t0002 a0001c0002t0002 a0001c0009t0002 others(2): Show a0001c0001t0002 a0001c0002t0002 a0001c0009t0002 a0001c0010t0002 a0005c0011t0002	a0001c0001t0002g0001 a0001c0001t0002g0004 a0001c0001t0002g0008 others(24): Show a0001c0001t0002g0001 a0001c0001t0002g0004 a0001c0001t0002g0008 a0001c0001t0002g0009 a0001c0001t0002g0010 a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0017 a0001c0001t0002g0018 a0001c0001t0002g0021 a0001c0001t0002g0023 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0036 a0001c0001t0002g0039 a0001c0001t0002g0041 a0001c0001t0002g0043 a0001c0001t0002g0117 a0001c0001t0002g0221 a0001c0001t0002g0256 a0001c0001t0002g0257 a0001c0001t0002g0259 a0001c0001t0002g0265 a0001c0002t0002g0249 a0001c0009t0002g0061 a0001c0010t0002g0093 a0005c0011t0002g0040	27	272	0.0993	-10	c.272 others(29): Show c.2722-1461_2722-1452delATATATATAT	PTK7	ENSG00000112655.16	transcript	ENST00000230419.9	protein_coding	17/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
PTK7_chr6_43071314_43166715	43157362	ATATTTTT others(3): Show ATATTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0002 a0001c0012t0002	a0001c0012t0002g0229 a0001c0012t0002g0229	1	272	0.0037	-10	c.272 others(29): Show c.2722-1453_2722-1444delATTTTTTTTT	PTK7	ENSG00000112655.16	transcript	ENST00000230419.9	protein_coding	17/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
PTK7_chr6_43071314_43166715	43157364	ATTTTTTT others(3): Show ATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	272	0.0037	-10	c.272 others(29): Show c.2722-1451_2722-1442delTTTTTTTTTT	PTK7	ENSG00000112655.16	transcript	ENST00000230419.9	protein_coding	17/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
PTN_chr7_137222341_137348733	137258571	TATTTAAA others(3): Show TATTTAAAAGA	T T	intron_variant intron_variant	MODIFIER	HG03942.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0079 a0001c0001t0001g0079	1	296	0.0034	-10	c.-1- others(25): Show c.-1-3607_-1-3598delTCTTTTAAAT	PTN	ENSG00000105894.13	transcript	ENST00000348225.7	protein_coding	1/4			chr7	TogoVar
PTP4A2_chr1_31901421_31943368	31906745	CACACACA others(3): Show CACACACACAT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp2 HG01070.hp2 HG00639.hp2 HG01070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0025	a0001c0001t0025g0007 a0001c0001t0025g0007	2	354	0.0057	-10	c.20 others(21): Show c.2097_*2106delATGTGTGTGT	PTP4A2	ENSG00000184007.22	transcript	ENST00000647444.2	protein_coding	6/6	2097		chr1	TogoVar
PTP4A2_chr1_31901421_31943368	31908130	ATATATTA others(3): Show ATATATTATAT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00323.hp1 NA19064.hp1 NA19083.hp1 others(1): Show HG00323.hp1 NA19064.hp1 NA19083.hp1 NA19086.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0115 a0001c0001t0019 a0001c0001t0115	a0001c0001t0019g0176 a0001c0001t0019g0221 a0001c0001t0019g0239 others(1): Show a0001c0001t0019g0176 a0001c0001t0019g0221 a0001c0001t0019g0239 a0001c0001t0115g0170	4	354	0.0113	-10	c.71 others(19): Show c.712_*721delATATAATATA	PTP4A2	ENSG00000184007.22	transcript	ENST00000647444.2	protein_coding	6/6	712		chr1	TogoVar
PTP4A2_chr1_31901421_31943368	31923984	TGCAATGC others(3): Show TGCAATGCAGA	T T	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01109.hp2 HG02145.hp1 others(13): Show HG00639.hp1 HG01109.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02486.hp1 HG02615.hp1 HG02622.hp2 HG02818.hp1 HG02886.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG03453.hp2 HG03516.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0047 a0001c0001t0065 others(11): Show a0001c0001t0027 a0001c0001t0047 a0001c0001t0065 a0001c0001t0066 a0001c0001t0067 a0001c0001t0068 a0001c0001t0069 a0001c0001t0095 a0001c0001t0134 a0001c0001t0144 a0001c0001t0145 a0001c0001t0146 a0001c0001t0148 a0001c0001t0150	a0001c0001t0027g0123 a0001c0001t0027g0127 a0001c0001t0047g0119 others(13): Show a0001c0001t0027g0123 a0001c0001t0027g0127 a0001c0001t0047g0119 a0001c0001t0047g0120 a0001c0001t0065g0130 a0001c0001t0066g0126 a0001c0001t0067g0125 a0001c0001t0068g0128 a0001c0001t0069g0121 a0001c0001t0095g0131 a0001c0001t0134g0124 a0001c0001t0144g0116 a0001c0001t0145g0122 a0001c0001t0146g0129 a0001c0001t0148g0117 a0001c0001t0150g0118	16	354	0.0452	-10	c.-59 others(29): Show c.-593-4336_-593-4327delTCTGCATTGC	PTP4A2	ENSG00000184007.22	transcript	ENST00000647444.2	protein_coding	1/5			chr1	TogoVar
PTPA_chr9_129106415_129153946	129140787	GGGGTGGG others(3): Show GGGGTGGGGTA	G G	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01943.hp2 HG02145.hp2 others(12): Show HG01099.hp1 HG01943.hp2 HG02145.hp2 HG02615.hp1 HG02723.hp1 HG02809.hp1 HG02886.hp2 HG03195.hp1 HG03225.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp2 NA18522.hp1 NA19043.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	a0001c0001t0002g0004 a0001c0001t0005g0004 a0001c0001t0005g0073 others(7): Show a0001c0001t0002g0004 a0001c0001t0005g0004 a0001c0001t0005g0073 a0001c0001t0005g0074 a0001c0001t0005g0075 a0001c0001t0005g0076 a0001c0001t0005g0077 a0001c0001t0005g0078 a0001c0001t0005g0079 a0001c0001t0005g0080	15	334	0.0449	-10	c.787 others(27): Show c.787-1649_787-1640delTAGGGTGGGG	PTPA	ENSG00000119383.21	transcript	ENST00000393370.7	protein_coding	8/9		INFO_REALIGN_3_PRIME	chr9	TogoVar
PTPN11_chr12_112413947_112514918	112424881	GTGTGTGT others(3): Show GTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	NA18946.hp2 NA18964.hp1 NA18946.hp2 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0209 a0001c0001t0002g0210 a0001c0001t0002g0209 a0001c0001t0002g0210	2	300	0.0067	-10	c.14+ others(25): Show c.14+5766_14+5775delATGTGTGTGT	PTPN11	ENSG00000179295.19	transcript	ENST00000351677.7	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr12	TogoVar
PTPN11_chr12_112413947_112514918	112424956	TTGTGTGT others(3): Show TTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02027.hp1 HG02055.hp1 HG02129.hp2 others(6): Show HG02027.hp1 HG02055.hp1 HG02129.hp2 HG02486.hp2 NA18943.hp2 NA18949.hp1 NA18954.hp1 NA18973.hp2 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 others(6): Show a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0180 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0211 a0001c0001t0002g0212	9	300	0.0300	-10	c.14+ others(25): Show c.14+5875_14+5884delGTGTGTGTGT	PTPN11	ENSG00000179295.19	transcript	ENST00000351677.7	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr12	TogoVar
PTPN11_chr12_112413947_112514918	112442830	TTATATAT others(3): Show TTATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02976.hp2 HG03098.hp2 others(2): Show HG02559.hp2 HG02976.hp2 HG03098.hp2 HG03540.hp2 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0001t0001 a0001c0001t0004 a0001c0002t0001	a0001c0001t0001g0050 a0001c0001t0001g0277 a0001c0001t0004g0286 others(2): Show a0001c0001t0001g0050 a0001c0001t0001g0277 a0001c0001t0004g0286 a0001c0002t0001g0162 a0001c0002t0001g0163	5	300	0.0167	-10	c.15- others(25): Show c.15-3407_15-3398delTATATATATA	PTPN11	ENSG00000179295.19	transcript	ENST00000351677.7	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr12	TogoVar
PTPN12_chr7_77532295_77645069	77564746	GTTTTTTT others(3): Show GTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02818.hp2 HG02976.hp1 others(3): Show HG02717.hp2 HG02818.hp2 HG02976.hp1 HG03209.hp2 NA19030.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0224 a0001c0001t0001g0225 others(3): Show a0001c0001t0001g0003 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0226 a0001c0001t0001g0227 a0001c0001t0001g0228	6	310	0.0194	-10	c.100 others(27): Show c.100-6311_100-6302delTTTTTTTTTT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77605409	GTTTTTTT others(3): Show GTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0305 a0001c0001t0001g0305	1	310	0.0032	-10	c.696 others(27): Show c.696-1807_696-1798delTTTTTTTTTT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	8/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77625472	GCTCTCTC others(3): Show GCTCTCTCTCT	G G	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG02896.hp1 HG01071.hp2 HG02896.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0128 a0003c0003t0001g0304 a0003c0003t0001g0128 a0003c0003t0001g0304	2	310	0.0065	-10	c.102 others(29): Show c.1026-1191_1026-1182delTCTCTCTCTC	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	12/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77625563	CTCTTTTT others(3): Show CTCTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA19072.hp1 NA19072.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0040 a0002c0002t0001g0040	1	310	0.0032	-10	c.102 others(29): Show c.1026-1140_1026-1131delCTTTTTTTTT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	12/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77637944	AATTTTTT others(3): Show AATTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0156 a0001c0001t0001g0156	1	310	0.0032	-10	c.217 others(27): Show c.2174-679_2174-670delATTTTTTTTT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	16/17			chr7	TogoVar
PTPN12_chr7_77532295_77645069	77641210	ATTTTTTT others(3): Show ATTTTTTTTTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00408.hp1 HG00735.hp2 HG00738.hp1 others(5): Show HG00408.hp1 HG00735.hp2 HG00738.hp1 HG01071.hp2 HG02735.hp1 NA19005.hp2 NA19060.hp1 NA19082.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0005 a0003c0003t0001g0189 a0003c0003t0001g0191 others(5): Show a0003c0003t0001g0005 a0003c0003t0001g0189 a0003c0003t0001g0191 a0003c0003t0001g0192 a0003c0003t0001g0194 a0003c0003t0001g0214 a0003c0003t0001g0216 a0003c0003t0001g0304	8	310	0.0258	-10	c.19 others(21): Show c.1931_*1940delTTTTTTTTTT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding		1142		chr7	TogoVar
PTPN13_chr4_86589315_86820161	86668646	AGTGCAGT others(3): Show AGTGCAGTGGT	A A	intron_variant intron_variant	MODIFIER	NA18968.hp1 NA18974.hp1 NA18968.hp1 NA18974.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0002 a0002c0001t0002	a0002c0001t0002g0156 a0002c0001t0002g0157 a0002c0001t0002g0156 a0002c0001t0002g0157	2	198	0.0101	-10	c.116 others(27): Show c.116-3715_116-3706delCAGTGGTGTG	PTPN13	ENSG00000163629.13	transcript	ENST00000411767.7	protein_coding	2/47		INFO_REALIGN_3_PRIME	chr4	TogoVar
PTPN14_chr1_214343700_214556602	214373558	AACACACA others(3): Show AACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02109.hp1 HG02280.hp2 others(10): Show HG02055.hp1 HG02109.hp1 HG02280.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02897.hp1 HG03130.hp1 HG03516.hp1 HG03540.hp2 NA19043.hp2 NA19240.hp1 NA21309.hp1	a0001 a0011 a0001 a0011	a0001c0001 a0001c0002 a0001c0014 others(2): Show a0001c0001 a0001c0002 a0001c0014 a0001c0024 a0011c0020	a0001c0001t0008 a0001c0001t0032 a0001c0001t0119 others(8): Show a0001c0001t0008 a0001c0001t0032 a0001c0001t0119 a0001c0001t0120 a0001c0001t0121 a0001c0001t0162 a0001c0001t0163 a0001c0002t0001 a0001c0014t0154 a0001c0024t0102 a0011c0020t0055	a0001c0001t0008g0002 a0001c0001t0008g0065 a0001c0001t0008g0069 others(10): Show a0001c0001t0008g0002 a0001c0001t0008g0065 a0001c0001t0008g0069 a0001c0001t0032g0061 a0001c0001t0119g0194 a0001c0001t0120g0196 a0001c0001t0121g0199 a0001c0001t0162g0253 a0001c0001t0163g0258 a0001c0002t0001g0045 a0001c0014t0154g0198 a0001c0024t0102g0078 a0011c0020t0055g0185	13	272	0.0478	-10	c.290 others(27): Show c.2908-729_2908-720delGTGTGTGTGT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	15/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214395588	AACACACA others(3): Show AACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG03654.hp2 HG03654.hp2	a0003 a0003	a0003c0016 a0003c0016	a0003c0016t0001 a0003c0016t0001	a0003c0016t0001g0035 a0003c0016t0001g0035	1	272	0.0037	-10	c.759 others(25): Show c.759-612_759-603delGTGTGTGTGT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	8/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214426032	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02451.hp2 HG02109.hp1 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0022 a0001c0001 a0001c0022	a0001c0001t0008 a0001c0022t0167 a0001c0001t0008 a0001c0022t0167	a0001c0001t0008g0069 a0001c0022t0167g0248 a0001c0001t0008g0069 a0001c0022t0167g0248	2	272	0.0074	-10	c.345 others(29): Show c.345-11316_345-11307delTTTTTTTTTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	3/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214465041	CCCCCCCC others(3): Show CCCCCCCCCCA	C C	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01891.hp2 HG02257.hp2 others(8): Show HG01109.hp1 HG01891.hp2 HG02257.hp2 HG02258.hp1 HG02572.hp2 HG02615.hp2 HG03098.hp2 HG03453.hp2 HG06807.hp2 NA18906.hp1 NA19240.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0011	a0001c0001 a0001c0023 a0002c0003 others(2): Show a0001c0001 a0001c0023 a0002c0003 a0003c0005 a0011c0020	a0001c0001t0002 a0001c0001t0028 a0001c0001t0043 others(8): Show a0001c0001t0002 a0001c0001t0028 a0001c0001t0043 a0001c0001t0067 a0001c0001t0179 a0001c0023t0169 a0002c0003t0031 a0002c0003t0147 a0002c0003t0184 a0003c0005t0064 a0011c0020t0055	a0001c0001t0002g0020 a0001c0001t0028g0243 a0001c0001t0043g0029 others(8): Show a0001c0001t0002g0020 a0001c0001t0028g0243 a0001c0001t0043g0029 a0001c0001t0067g0017 a0001c0001t0179g0261 a0001c0023t0169g0256 a0002c0003t0031g0186 a0002c0003t0147g0197 a0002c0003t0184g0262 a0003c0005t0064g0187 a0011c0020t0055g0185	11	272	0.0404	-10	c.-15 others(25): Show c.-154-94_-154-85delTGGGGGGGGG	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214531499	AACACACA others(3): Show AACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG02572.hp1 NA19007.hp1 HG00642.hp1 HG02572.hp1 NA19007.hp1	a0001 a0006 a0001 a0006	a0001c0002 a0001c0006 a0006c0011 a0001c0002 a0001c0006 a0006c0011	a0001c0002t0020 a0001c0006t0180 a0006c0011t0117 a0001c0002t0020 a0001c0006t0180 a0006c0011t0117	a0001c0002t0020g0153 a0001c0006t0180g0272 a0006c0011t0117g0188 a0001c0002t0020g0153 a0001c0006t0180g0272 a0006c0011t0117g0188	3	272	0.0110	-10	c.-15 others(31): Show c.-155+19674_-155+19683delGTGTGTGTGT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214553151	AAAAATAA others(3): Show AAAAATAAAAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01106.hp2 HG02615.hp2 HG02886.hp2 HG01106.hp2 HG02615.hp2 HG02886.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0023 a0002c0003 a0003c0005 a0001c0023 a0002c0003 a0003c0005	a0001c0023t0169 a0002c0003t0172 a0003c0005t0166 a0001c0023t0169 a0002c0003t0172 a0003c0005t0166	a0001c0023t0169g0256 a0002c0003t0172g0254 a0003c0005t0166g0255 a0001c0023t0169g0256 a0002c0003t0172g0254 a0003c0005t0166g0255	3	272	0.0110	-10	c.-21 others(21): Show c.-2133_-2124delATTTTATTTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding		1550		chr1	TogoVar
PTPN14_chr1_214343700_214556602	214556008	AGTGTGTG others(3): Show AGTGTGTGTGT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03471.hp2 NA18906.hp2 HG03471.hp2 NA18906.hp2	a0003 a0006 a0003 a0006	a0003c0005 a0006c0011 a0003c0005 a0006c0011	a0003c0005t0065 a0006c0011t0164 a0003c0005t0065 a0006c0011t0164	a0003c0005t0065g0012 a0006c0011t0164g0249 a0003c0005t0065g0012 a0006c0011t0164g0249	2	272	0.0074	-10	c.-49 others(21): Show c.-4990_-4981delACACACACAC	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding		4407		chr1	TogoVar
PTPN18_chr2_130351056_130380405	130363791	TTGGGTAT others(3): Show TTGGGTATTGC	T T	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0009 a0002c0004t0009	a0002c0004t0009g0221 a0002c0004t0009g0221	1	380	0.0026	-10	c.414 others(27): Show c.414+4150_414+4159delTATTGCTGGG	PTPN18	ENSG00000072135.13	transcript	ENST00000175756.10	protein_coding	5/14		INFO_REALIGN_3_PRIME	chr2	TogoVar
PTPN18_chr2_130351056_130380405	130367050	ATTTTTTT others(3): Show ATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01258.hp2 HG02622.hp1 others(4): Show HG01257.hp1 HG01258.hp2 HG02622.hp1 HG02647.hp2 HG03017.hp1 HG03098.hp2 HG06807.hp2	a0002 a0002	a0002c0002 a0002c0004 a0002c0016 a0002c0002 a0002c0004 a0002c0016	a0002c0002t0012 a0002c0004t0002 a0002c0004t0010 others(1): Show a0002c0002t0012 a0002c0004t0002 a0002c0004t0010 a0002c0016t0023	a0002c0002t0012g0068 a0002c0004t0002g0029 a0002c0004t0002g0198 others(3): Show a0002c0002t0012g0068 a0002c0004t0002g0029 a0002c0004t0002g0198 a0002c0004t0002g0200 a0002c0004t0010g0029 a0002c0016t0023g0199	7	380	0.0184	-10	c.415 others(27): Show c.415-2064_415-2055delTTTTTTTTTT	PTPN18	ENSG00000072135.13	transcript	ENST00000175756.10	protein_coding	5/14		INFO_REALIGN_3_PRIME	chr2	TogoVar
PTPN1_chr20_50505383_50590241	50506320	CAAACAAA others(3): Show CAAACAAAACA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02523.hp1 HG03927.hp1 NA18941.hp2 others(4): Show HG02523.hp1 HG03927.hp1 NA18941.hp2 NA18944.hp2 NA18947.hp1 NA18957.hp1 NA19055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0105 a0001c0001t0001g0119 a0001c0001t0001g0160 others(4): Show a0001c0001t0001g0105 a0001c0001t0001g0119 a0001c0001t0001g0160 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0179	7	336	0.0208	-10	c.-42 others(21): Show c.-4207_-4198delAAACAAAACA	PTPN1	ENSG00000196396.10	transcript	ENST00000371621.5	protein_coding		4062		chr20	TogoVar
PTPN1_chr20_50505383_50590241	50589084	GAAAAAAA others(3): Show GAAAAAAAAAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp2 HG03927.hp1 HG03942.hp2 HG02615.hp2 HG03927.hp1 HG03942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0110 a0001c0001t0001g0168 a0001c0001t0005g0033 a0001c0001t0001g0110 a0001c0001t0001g0168 a0001c0001t0005g0033	3	336	0.0089	-10	c.63 others(21): Show c.6370_*6379delAAAAAAAAAA	PTPN1	ENSG00000196396.10	transcript	ENST00000371621.5	protein_coding		3844		chr20	TogoVar
PTPN21_chr14_88460778_88560007	88474146	AAAAAAAA others(3): Show AAAAAAAAAAC	A A	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02145.hp2 HG02451.hp1 others(13): Show HG02109.hp2 HG02145.hp2 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02630.hp2 HG02723.hp1 HG02886.hp2 HG02895.hp2 HG02897.hp1 HG03195.hp1 HG03209.hp2 HG03516.hp2 NA18522.hp2 NA19030.hp2 NA19240.hp2	a0004 a0005 a0006 others(2): Show a0004 a0005 a0006 a0007 a0013	a0004c0005 a0004c0009 a0004c0013 others(4): Show a0004c0005 a0004c0009 a0004c0013 a0005c0006 a0006c0007 a0007c0012 a0013c0022	a0004c0005t0007 a0004c0005t0026 a0004c0009t0018 others(5): Show a0004c0005t0007 a0004c0005t0026 a0004c0009t0018 a0004c0013t0042 a0005c0006t0007 a0006c0007t0013 a0007c0012t0007 a0013c0022t0027	a0004c0005t0007g0033 a0004c0005t0007g0034 a0004c0005t0007g0062 others(12): Show a0004c0005t0007g0033 a0004c0005t0007g0034 a0004c0005t0007g0062 a0004c0005t0007g0064 a0004c0005t0026g0032 a0004c0009t0018g0023 a0004c0009t0018g0024 a0004c0013t0042g0263 a0005c0006t0007g0018 a0005c0006t0007g0019 a0005c0006t0007g0020 a0006c0007t0013g0002 a0006c0007t0013g0025 a0007c0012t0007g0072 a0013c0022t0027g0030	16	348	0.0460	-10	c.251 others(27): Show c.2512-354_2512-345delGTTTTTTTTT	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	13/18			chr14	TogoVar
PTPN21_chr14_88460778_88560007	88482613	CAAAAGAA others(3): Show CAAAAGAAAAG	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp2 HG02040.hp2 others(8): Show HG01884.hp1 HG01884.hp2 HG02040.hp2 HG02280.hp1 HG03017.hp2 HG03579.hp1 NA18939.hp2 NA18952.hp2 NA18980.hp1 NA18988.hp2 NA18990.hp1	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0001c0017 a0002c0002 others(1): Show a0001c0001 a0001c0017 a0002c0002 a0008c0010	a0001c0001t0003 a0001c0001t0004 a0001c0017t0035 others(4): Show a0001c0001t0003 a0001c0001t0004 a0001c0017t0035 a0002c0002t0009 a0002c0002t0016 a0002c0002t0020 a0008c0010t0001	a0001c0001t0003g0212 a0001c0001t0004g0050 a0001c0001t0004g0051 others(8): Show a0001c0001t0003g0212 a0001c0001t0004g0050 a0001c0001t0004g0051 a0001c0017t0035g0230 a0002c0002t0009g0027 a0002c0002t0016g0264 a0002c0002t0016g0266 a0002c0002t0020g0102 a0002c0002t0020g0103 a0008c0010t0001g0107 a0008c0010t0001g0108	11	348	0.0316	-10	c.107 others(29): Show c.1079-2271_1079-2262delCTTTTCTTTT	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	12/18			chr14	TogoVar
PTPN21_chr14_88460778_88560007	88495013	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02886.hp2 HG03540.hp2 others(1): Show HG02559.hp1 HG02886.hp2 HG03540.hp2 NA19030.hp2	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0007 a0005c0006t0007	a0005c0006t0007g0018 a0005c0006t0007g0019 a0005c0006t0007g0020 others(1): Show a0005c0006t0007g0018 a0005c0006t0007g0019 a0005c0006t0007g0020 a0005c0006t0007g0021	4	348	0.0115	-10	c.932 others(27): Show c.932+1390_932+1399delTTTTTTTTTT	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	10/18			chr14	TogoVar
PTPN21_chr14_88460778_88560007	88518384	GTGTATAT others(3): Show GTGTATATATA	G G	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0008 a0002c0002t0008	a0002c0002t0008g0076 a0002c0002t0008g0076	1	348	0.0029	-10	c.181 others(27): Show c.181-1133_181-1124delTATATATACA	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	2/18			chr14	TogoVar
PTPN22_chr1_113808811_113876712	113823833	GTATGTTT others(3): Show GTATGTTTTCC	G G	intron_variant intron_variant	MODIFIER	NA19001.hp2 NA19001.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0034 a0001c0001t0004g0034	1	358	0.0028	-10	c.228 others(29): Show c.2281+1299_2281+1308delGGAAAACATA	PTPN22	ENSG00000134242.16	transcript	ENST00000359785.10	protein_coding	19/20			chr1	TogoVar
PTPN22_chr1_113808811_113876712	113826397	GGGGAAGG others(3): Show GGGGAAGGGAA	G G	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01891.hp1 HG02055.hp1 others(15): Show HG00741.hp1 HG01891.hp1 HG02055.hp1 HG02615.hp2 HG02630.hp2 HG02647.hp2 HG02809.hp1 HG02922.hp1 HG02965.hp2 HG02976.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp2 HG03486.hp2 HG03516.hp2 HG04204.hp1 NA18955.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0009 a0001c0001t0001g0082 a0001c0001t0001g0086 others(13): Show a0001c0001t0001g0009 a0001c0001t0001g0082 a0001c0001t0001g0086 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0260 a0001c0001t0002g0005 a0001c0001t0003g0296 a0001c0001t0003g0320 a0001c0001t0003g0323	18	358	0.0503	-10	c.225 others(29): Show c.2251-1235_2251-1226delTTCCCTTCCC	PTPN22	ENSG00000134242.16	transcript	ENST00000359785.10	protein_coding	18/20			chr1	TogoVar
PTPN23_chr3_47376021_47418435	47416615	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00597.hp1 HG02809.hp1 NA20752.hp1 HG00597.hp1 HG02809.hp1 NA20752.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0003 a0005c0007 a0001c0001 a0002c0003 a0005c0007	a0001c0001t0001 a0002c0003t0001 a0005c0007t0001 a0001c0001t0001 a0002c0003t0001 a0005c0007t0001	a0001c0001t0001g0059 a0002c0003t0001g0100 a0005c0007t0001g0001 a0001c0001t0001g0059 a0002c0003t0001g0100 a0005c0007t0001g0001	3	332	0.0090	-10	c.34 others(21): Show c.3431_*3440delTTTTTTTTTT	PTPN23	ENSG00000076201.16	transcript	ENST00000265562.5	protein_coding		3181		chr3	TogoVar
PTPN2_chr18_12787152_12889237	12866437	AAAAACAA others(3): Show AAAAACAAAAC	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00408.hp2 HG00642.hp1 others(69): Show HG00099.hp1 HG00408.hp2 HG00642.hp1 HG00738.hp2 HG01070.hp2 HG01081.hp1 HG01123.hp1 HG01167.hp1 HG01169.hp2 HG01993.hp2 HG02257.hp2 HG02258.hp2 HG02280.hp1 HG02451.hp2 HG02615.hp1 HG02723.hp1 HG02735.hp2 HG02809.hp2 HG02818.hp2 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02976.hp1 HG03130.hp2 HG03225.hp1 HG03486.hp1 HG03540.hp2 HG03831.hp1 HG03834.hp2 HG03942.hp2 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp2 NA18906.hp1 NA18941.hp1 NA18942.hp2 NA18944.hp2 NA18945.hp1 NA18947.hp2 NA18951.hp2 NA18952.hp1 NA18961.hp2 NA18963.hp1 NA18965.hp2 NA18968.hp1 NA18970.hp2 NA18971.hp1 NA18975.hp2 NA18980.hp2 NA18982.hp2 NA18983.hp1 NA18984.hp2 NA18989.hp2 NA18997.hp2 NA18998.hp2 NA19000.hp2 NA19002.hp2 NA19003.hp1 NA19004.hp2 NA19005.hp2 NA19009.hp1 NA19043.hp1 NA19057.hp2 NA19060.hp1 NA19062.hp1 NA19077.hp2 NA19084.hp1 NA19088.hp1 NA19090.hp1 NA20805.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0002c0002 a0001c0001 a0001c0004 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(10): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0010 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0019 a0001c0001t0021 a0001c0001t0025 a0001c0001t0029 a0001c0004t0002 a0002c0002t0001	a0001c0001t0001g0006 a0001c0001t0001g0048 a0001c0001t0001g0066 others(69): Show a0001c0001t0001g0006 a0001c0001t0001g0048 a0001c0001t0001g0066 a0001c0001t0002g0005 a0001c0001t0002g0007 a0001c0001t0002g0008 a0001c0001t0002g0009 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0013 a0001c0001t0002g0014 a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0017 a0001c0001t0002g0018 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0043 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0047 a0001c0001t0002g0049 a0001c0001t0002g0051 a0001c0001t0002g0052 a0001c0001t0002g0054 a0001c0001t0002g0055 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0081 a0001c0001t0005g0079 a0001c0001t0010g0046 a0001c0001t0010g0103 a0001c0001t0010g0104 a0001c0001t0010g0105 a0001c0001t0013g0061 a0001c0001t0013g0062 a0001c0001t0013g0063 a0001c0001t0014g0059 a0001c0001t0014g0082 a0001c0001t0015g0106 a0001c0001t0019g0033 a0001c0001t0021g0053 a0001c0001t0025g0027 a0001c0001t0029g0370 a0001c0004t0002g0050 a0002c0002t0001g0098 a0002c0002t0001g0099 a0002c0002t0001g0100 a0002c0002t0001g0101 a0002c0002t0001g0102	72	370	0.1946	-10	c.70- others(25): Show c.70-7193_70-7184delGTTTTGTTTT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870310	CATATATA others(3): Show CATATATATGT	C C	intron_variant intron_variant	MODIFIER	HG03654.hp2 HG03704.hp2 HG03654.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0122 a0001c0001t0003g0117 a0001c0001t0001g0122 a0001c0001t0003g0117	2	370	0.0054	-10	c.70- others(27): Show c.70-11066_70-11057delACATATATAT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870332	TATATATA others(3): Show TATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00323.hp2 HG00733.hp2 others(23): Show HG00099.hp2 HG00323.hp2 HG00733.hp2 HG01070.hp1 HG01071.hp1 HG02056.hp2 HG02132.hp1 HG02135.hp1 HG02523.hp1 NA18939.hp1 NA18953.hp1 NA18956.hp2 NA18960.hp2 NA18963.hp2 NA18971.hp2 NA18977.hp1 NA18977.hp2 NA18992.hp2 NA18993.hp2 NA19003.hp2 NA19004.hp1 NA19058.hp2 NA19062.hp2 NA19077.hp1 NA19082.hp1 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0011	a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0002g0119 others(23): Show a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0002g0119 a0001c0001t0003g0134 a0001c0001t0003g0135 a0001c0001t0004g0109 a0001c0001t0004g0110 a0001c0001t0004g0112 a0001c0001t0004g0113 a0001c0001t0004g0116 a0001c0001t0004g0118 a0001c0001t0004g0120 a0001c0001t0004g0121 a0001c0001t0004g0123 a0001c0001t0004g0124 a0001c0001t0004g0125 a0001c0001t0004g0127 a0001c0001t0004g0128 a0001c0001t0004g0129 a0001c0001t0004g0130 a0001c0001t0004g0133 a0001c0001t0004g0140 a0001c0001t0004g0146 a0001c0001t0004g0147 a0001c0001t0011g0108 a0001c0001t0011g0111	26	370	0.0703	-10	c.70- others(27): Show c.70-11088_70-11079delGTATATATAT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870342	CATATATA others(3): Show CATATATATGT	C C	intron_variant intron_variant	MODIFIER	HG03654.hp2 HG03654.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0122 a0001c0001t0001g0122	1	370	0.0027	-10	c.70- others(27): Show c.70-11098_70-11089delACATATATAT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870395	ATATATAC others(3): Show ATATATACACG	A A	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0004 a0001c0001t0012g0004	1	370	0.0027	-10	c.70- others(27): Show c.70-11151_70-11142delCGTGTATATA	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870416	TATATATA others(3): Show TATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01891.hp1 HG02055.hp1 others(5): Show HG01884.hp1 HG01891.hp1 HG02055.hp1 HG02897.hp2 HG03195.hp2 HG03471.hp2 HG03486.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0027 a0001c0001t0002 a0001c0001t0007 a0001c0001t0027	a0001c0001t0002g0270 a0001c0001t0007g0158 a0001c0001t0007g0272 others(5): Show a0001c0001t0002g0270 a0001c0001t0007g0158 a0001c0001t0007g0272 a0001c0001t0007g0274 a0001c0001t0007g0275 a0001c0001t0007g0276 a0001c0001t0007g0277 a0001c0001t0027g0271	8	370	0.0216	-10	c.70- others(27): Show c.70-11172_70-11163delGTATATATAT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870431	ATATATAT others(3): Show ATATATATGTG	A A	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01069.hp2 HG01071.hp2 others(6): Show HG00738.hp1 HG01069.hp2 HG01071.hp2 HG01109.hp1 HG01361.hp2 HG01515.hp1 HG02602.hp1 HG02735.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0198 a0001c0001t0001g0265 a0001c0001t0005g0256 others(6): Show a0001c0001t0001g0198 a0001c0001t0001g0265 a0001c0001t0005g0256 a0001c0001t0005g0257 a0001c0001t0005g0259 a0001c0001t0005g0261 a0001c0001t0005g0263 a0001c0001t0005g0268 a0001c0001t0005g0334	9	370	0.0243	-10	c.70- others(27): Show c.70-11187_70-11178delCACATATATA	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870439	GTGTATAT others(3): Show GTGTATATATA	G G	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG01070.hp1 HG01071.hp1 others(13): Show HG00544.hp2 HG01070.hp1 HG01071.hp1 HG02132.hp1 HG02523.hp1 HG04204.hp2 NA18939.hp1 NA18953.hp1 NA18960.hp2 NA18971.hp2 NA18977.hp2 NA18993.hp2 NA19004.hp1 NA19058.hp2 NA19077.hp1 NA19082.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0011 a0001c0001t0001 a0001c0001t0004 a0001c0001t0011	a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0004g0109 others(13): Show a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0004g0109 a0001c0001t0004g0110 a0001c0001t0004g0113 a0001c0001t0004g0118 a0001c0001t0004g0120 a0001c0001t0004g0126 a0001c0001t0004g0128 a0001c0001t0004g0129 a0001c0001t0004g0132 a0001c0001t0004g0133 a0001c0001t0004g0140 a0001c0001t0004g0146 a0001c0001t0004g0147 a0001c0001t0011g0111	16	370	0.0432	-10	c.70- others(27): Show c.70-11195_70-11186delTATATATACA	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870462	TAGAGAGA others(3): Show TAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0056 a0001c0001t0002g0056	1	370	0.0027	-10	c.70- others(27): Show c.70-11218_70-11209delCTCTCTCTCT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar

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