| regionname | pos | ref | alt | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PTPRQ_chr12_80439235_80685273 | 80534704 | CTATAATA others(3): Show |
C | intron_variant | MODIFIER | HG02818.hp1 HG02965.hp1 HG02970.hp2 |
a0012a0058 | a0012c0047a0012c0051a0058c0050 | a0012c0047t0002a0012c0051t0004a0058c0050t0002 | a0012c0047t0002g0172a0012c0051t0004g0173a0058c0050t0002g0175 | 3 | 178 | 0.0169 | -10 | c.284 others(27): Show |
PTPRQ | ENSG00000139304.16 | transcript | ENST00000644991.3 | protein_coding | 18/44 | INFO_REALIGN_3_PRIME | chr12 | TogoVar | |||||
| PTPRQ_chr12_80439235_80685273 | 80552645 | TTATATAT others(3): Show |
T | intron_variant | MODIFIER | HG01192.hp2 HG02109.hp1 HG03209.hp2 others(1): Show |
a0010 | a0010c0007 | a0010c0007t0002a0010c0007t0004 | a0010c0007t0002g0168a0010c0007t0002g0169a0010c0007t0002g0170others(1): Show | 4 | 178 | 0.0225 | -10 | c.428 others(29): Show |
PTPRQ | ENSG00000139304.16 | transcript | ENST00000644991.3 | protein_coding | 25/44 | INFO_REALIGN_3_PRIME | chr12 | TogoVar | |||||
| PTPRQ_chr12_80439235_80685273 | 80558119 | CTTTCTTT others(3): Show |
C | intron_variant | MODIFIER | HG02647.hp1 | a0004 | a0004c0009 | a0004c0009t0002 | a0004c0009t0002g0078 | 1 | 178 | 0.0056 | -10 | c.428 others(29): Show |
PTPRQ | ENSG00000139304.16 | transcript | ENST00000644991.3 | protein_coding | 25/44 | INFO_REALIGN_3_PRIME | chr12 | TogoVar | |||||
| PTPRR_chr12_70633079_70925738 | 70665364 | CTTTTTTT others(3): Show |
C | intron_variant | MODIFIER | HG00735.hp1 HG02630.hp2 HG02809.hp2 others(2): Show |
a0002a0003a0004 | a0002c0002a0002c0021a0003c0003others(2): Show | a0002c0002t0001a0002c0021t0001a0003c0003t0001others(2): Show | a0002c0002t0001g0067a0002c0021t0001g0075a0003c0003t0001g0020others(2): Show | 5 | 204 | 0.0245 | -10 | c.149 others(29): Show |
PTPRR | ENSG00000153233.13 | transcript | ENST00000283228.7 | protein_coding | 10/13 | chr12 | TogoVar | ||||||
| PTPRR_chr12_70633079_70925738 | 70666935 | GTTTTTTT others(3): Show |
G | intron_variant | MODIFIER | HG02451.hp2 HG02922.hp1 |
a0003 | a0003c0003 | a0003c0003t0001 | a0003c0003t0001g0099a0003c0003t0001g0196 | 2 | 204 | 0.0098 | -10 | c.149 others(29): Show |
PTPRR | ENSG00000153233.13 | transcript | ENST00000283228.7 | protein_coding | 10/13 | chr12 | TogoVar | ||||||
| PTPRR_chr12_70633079_70925738 | 70728528 | AATATATA others(3): Show |
A | intron_variant | MODIFIER | HG01361.hp2 HG01884.hp2 HG01891.hp2 others(15): Show |
a0001a0002a0003others(2): Show | a0001c0001a0002c0002a0003c0003others(3): Show | a0001c0001t0001a0002c0002t0001a0002c0002t0002others(4): Show | a0001c0001t0001g0056a0002c0002t0001g0006a0002c0002t0001g0022others(15): Show | 18 | 204 | 0.0882 | -10 | c.100 others(31): Show |
PTPRR | ENSG00000153233.13 | transcript | ENST00000283228.7 | protein_coding | 6/13 | chr12 | TogoVar | ||||||
| PTPRR_chr12_70633079_70925738 | 70795913 | ATTTTTTT others(3): Show |
A | intron_variant | MODIFIER | HG01884.hp1 HG03139.hp2 NA21309.hp2 |
a0001a0003 | a0001c0001a0003c0003 | a0001c0001t0001a0003c0003t0001 | a0001c0001t0001g0017a0001c0001t0001g0018a0003c0003t0001g0020 | 3 | 204 | 0.0147 | -10 | c.358 others(29): Show |
PTPRR | ENSG00000153233.13 | transcript | ENST00000283228.7 | protein_coding | 2/13 | chr12 | TogoVar | ||||||
| PTPRR_chr12_70633079_70925738 | 70821213 | CTTTTTTT others(3): Show |
C | intron_variant | MODIFIER | HG01496.hp1 HG03540.hp1 |
a0002a0015 | a0002c0002a0015c0016 | a0002c0002t0002a0015c0016t0001 | a0002c0002t0002g0199a0015c0016t0001g0198 | 2 | 204 | 0.0098 | -10 | c.358 others(29): Show |
PTPRR | ENSG00000153233.13 | transcript | ENST00000283228.7 | protein_coding | 2/13 | chr12 | TogoVar | ||||||
| PTPRR_chr12_70633079_70925738 | 70823108 | GACACACA others(3): Show |
G | intron_variant | MODIFIER | HG00597.hp2 HG00609.hp2 HG00621.hp1 others(8): Show |
a0001 | a0001c0001a0001c0004 | a0001c0001t0001a0001c0004t0001 | a0001c0001t0001g0014a0001c0001t0001g0085a0001c0001t0001g0132others(8): Show | 11 | 204 | 0.0539 | -10 | c.358 others(29): Show |
PTPRR | ENSG00000153233.13 | transcript | ENST00000283228.7 | protein_coding | 2/13 | chr12 | TogoVar | ||||||
| PTPRR_chr12_70633079_70925738 | 70924154 | CACACACA others(3): Show |
C | upstream_gene_variant | MODIFIER | HG02486.hp1 HG02630.hp1 HG02896.hp1 others(7): Show |
a0001a0002a0003others(2): Show | a0001c0004a0002c0002a0003c0003others(2): Show | a0001c0004t0001a0002c0002t0001a0002c0002t0003others(3): Show | a0001c0004t0001g0042a0002c0002t0001g0041a0002c0002t0001g0043others(7): Show | 10 | 204 | 0.0490 | -10 | c.-37 others(21): Show |
PTPRR | ENSG00000153233.13 | transcript | ENST00000283228.7 | protein_coding | 3417 | chr12 | TogoVar | ||||||
| PTPRS_chr19_5200508_5345812 | 5221397 | CTGATCCC others(3): Show |
C | intron_variant | MODIFIER | HG00140.hp1 HG00280.hp1 HG00639.hp2 others(22): Show |
a0001 | a0001c0001a0001c0005a0001c0007others(3): Show | a0001c0001t0001a0001c0001t0008a0001c0005t0001others(4): Show | a0001c0001t0001g0011a0001c0001t0001g0029a0001c0001t0001g0060others(22): Show | 25 | 276 | 0.0906 | -10 | c.320 others(27): Show |
PTPRS | ENSG00000105426.19 | transcript | ENST00000262963.11 | protein_coding | 19/37 | chr19 | TogoVar | ||||||
| PTPRS_chr19_5200508_5345812 | 5233946 | CAAAAAAA others(3): Show |
C | intron_variant | MODIFIER | HG02109.hp1 HG02145.hp1 HG02257.hp2 others(8): Show |
a0001 | a0001c0015a0001c0016a0001c0017others(4): Show | a0001c0015t0021a0001c0015t0027a0001c0016t0016others(5): Show | a0001c0015t0021g0025a0001c0015t0021g0026a0001c0015t0027g0032others(8): Show | 11 | 276 | 0.0399 | -10 | c.185 others(29): Show |
PTPRS | ENSG00000105426.19 | transcript | ENST00000262963.11 | protein_coding | 13/37 | chr19 | TogoVar | ||||||
| PTPRS_chr19_5200508_5345812 | 5250787 | CAAAAACC others(3): Show |
C | intron_variant | MODIFIER | HG00140.hp2 HG00642.hp2 HG02735.hp2 others(2): Show |
a0001a0002 | a0001c0005a0001c0008a0001c0009others(1): Show | a0001c0005t0003a0001c0008t0006a0001c0009t0005others(1): Show | a0001c0005t0003g0146a0001c0008t0006g0187a0001c0008t0006g0237others(2): Show | 5 | 276 | 0.0181 | -10 | c.719 others(27): Show |
PTPRS | ENSG00000105426.19 | transcript | ENST00000262963.11 | protein_coding | 9/37 | chr19 | TogoVar | ||||||
| PTPRS_chr19_5200508_5345812 | 5250947 | CGGGGGGG others(3): Show |
C | intron_variant | MODIFIER | HG00323.hp2 HG00738.hp2 HG01081.hp1 others(21): Show |
a0001a0005a0009 | a0001c0003a0001c0004a0001c0005others(6): Show | a0001c0003t0004a0001c0003t0042a0001c0003t0043others(9): Show | a0001c0003t0004g0061a0001c0003t0004g0062a0001c0003t0004g0079others(21): Show | 24 | 276 | 0.0870 | -10 | c.719 others(27): Show |
PTPRS | ENSG00000105426.19 | transcript | ENST00000262963.11 | protein_coding | 9/37 | chr19 | TogoVar | ||||||
| PTPRS_chr19_5200508_5345812 | 5272595 | CAAAAAAA others(3): Show |
C | intron_variant | MODIFIER | HG02976.hp2 | a0001 | a0001c0006 | a0001c0006t0007 | a0001c0006t0007g0033 | 1 | 276 | 0.0036 | -10 | c.379 others(25): Show |
PTPRS | ENSG00000105426.19 | transcript | ENST00000262963.11 | protein_coding | 4/37 | chr19 | TogoVar | ||||||
| PTPRS_chr19_5200508_5345812 | 5287964 | GCACACAC others(3): Show |
G | intron_variant | MODIFIER | HG00280.hp2 HG00735.hp2 HG00738.hp1 others(24): Show |
a0001a0002 | a0001c0001a0001c0006a0001c0007others(13): Show | a0001c0001t0001a0001c0006t0007a0001c0007t0001others(19): Show | a0001c0001t0001g0097a0001c0006t0007g0033a0001c0007t0001g0102others(24): Show | 27 | 276 | 0.0978 | -10 | c.-94 others(27): Show |
PTPRS | ENSG00000105426.19 | transcript | ENST00000262963.11 | protein_coding | 1/37 | chr19 | TogoVar | ||||||
| PTPRS_chr19_5200508_5345812 | 5297791 | CTTTTTTT others(3): Show |
C | intron_variant | MODIFIER | HG00323.hp1 HG00621.hp2 HG01257.hp1 others(17): Show |
a0001a0004 | a0001c0001a0001c0002a0001c0003others(7): Show | a0001c0001t0001a0001c0001t0018a0001c0002t0003others(12): Show | a0001c0001t0001g0202a0001c0001t0001g0239a0001c0001t0018g0174others(17): Show | 20 | 276 | 0.0725 | -10 | c.-94 others(29): Show |
PTPRS | ENSG00000105426.19 | transcript | ENST00000262963.11 | protein_coding | 1/37 | chr19 | TogoVar | ||||||
| PTPRS_chr19_5200508_5345812 | 5315350 | GGTTTTTT others(3): Show |
G | intron_variant | MODIFIER | HG00280.hp2 HG00738.hp1 HG02083.hp1 others(5): Show |
a0001 | a0001c0003a0001c0009a0001c0013others(4): Show | a0001c0003t0004a0001c0009t0005a0001c0009t0033others(5): Show | a0001c0003t0004g0200a0001c0009t0005g0088a0001c0009t0033g0078others(5): Show | 8 | 276 | 0.0290 | -10 | c.-95 others(29): Show |
PTPRS | ENSG00000105426.19 | transcript | ENST00000262963.11 | protein_coding | 1/37 | chr19 | TogoVar | ||||||
| PTPRS_chr19_5200508_5345812 | 5324226 | CAAAAAAA others(3): Show |
C | intron_variant | MODIFIER | NA19084.hp2 | a0001 | a0001c0001 | a0001c0001t0025 | a0001c0001t0025g0183 | 1 | 276 | 0.0036 | -10 | c.-95 others(29): Show |
PTPRS | ENSG00000105426.19 | transcript | ENST00000262963.11 | protein_coding | 1/37 | chr19 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42086726 | CAAAAAAA others(3): Show |
C | intron_variant | MODIFIER | HG01261.hp2 HG02280.hp1 HG02809.hp2 others(6): Show |
a0001a0002a0003others(2): Show | a0001c0023a0001c0026a0001c0027others(5): Show | a0001c0023t0007a0001c0026t0007a0001c0027t0028others(5): Show | a0001c0023t0007g0034a0001c0026t0007g0059a0001c0027t0028g0049others(6): Show | 9 | 62 | 0.1452 | -10 | c.384 others(27): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 27/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42107221 | CTCTTCTT others(3): Show |
C | intron_variant | MODIFIER | HG00741.hp1 HG01496.hp1 HG02155.hp1 others(4): Show |
a0001a0002a0009 | a0001c0002a0001c0003a0001c0018others(2): Show | a0001c0002t0003a0001c0003t0003a0001c0018t0003others(3): Show | a0001c0002t0003g0040a0001c0003t0003g0033a0001c0018t0003g0030others(4): Show | 7 | 62 | 0.1129 | -10 | c.325 others(27): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 23/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42169783 | CACACACA others(3): Show |
C | intron_variant | MODIFIER | HG02886.hp1 HG02886.hp2 |
a0001 | a0001c0002a0001c0003 | a0001c0002t0006a0001c0003t0001 | a0001c0002t0006g0036a0001c0003t0001g0038 | 2 | 62 | 0.0323 | -10 | c.249 others(29): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 16/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42182907 | GGTGTGTG others(3): Show |
G | intron_variant | MODIFIER | HG00741.hp1 HG01109.hp2 HG02622.hp2 others(8): Show |
a0001a0002a0004others(3): Show | a0001c0002a0001c0018a0001c0023others(7): Show | a0001c0002t0002a0001c0002t0003a0001c0018t0003others(8): Show | a0001c0002t0002g0058a0001c0002t0003g0040a0001c0018t0003g0030others(8): Show | 11 | 62 | 0.1774 | -10 | c.249 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 16/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42217376 | TACACACA others(3): Show |
T | intron_variant | MODIFIER | HG01257.hp2 | a0002 | a0002c0001 | a0002c0001t0025 | a0002c0001t0025g0002 | 1 | 62 | 0.0161 | -10 | c.234 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 15/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42276496 | AATATATA others(3): Show |
A | intron_variant | MODIFIER | HG00438.hp2 | a0002 | a0002c0004 | a0002c0004t0002 | a0002c0004t0002g0007 | 1 | 62 | 0.0161 | -10 | c.217 others(29): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 13/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42278073 | CTATATAT others(3): Show |
C | intron_variant | MODIFIER | HG00140.hp2 HG01109.hp2 HG02622.hp2 others(2): Show |
a0002a0004a0008 | a0002c0001a0002c0005a0002c0015others(2): Show | a0002c0001t0002a0002c0005t0012a0002c0015t0001others(2): Show | a0002c0001t0002g0025a0002c0005t0012g0009a0002c0015t0001g0013others(2): Show | 5 | 62 | 0.0807 | -10 | c.217 others(29): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 13/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42345582 | ATGTGTGT others(3): Show |
A | intron_variant | MODIFIER | HG02647.hp2 | a0001 | a0001c0003 | a0001c0003t0018 | a0001c0003t0018g0046 | 1 | 62 | 0.0161 | -10 | c.186 others(29): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 11/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42363292 | ATATATAT others(3): Show |
A | intron_variant | MODIFIER | HG02280.hp1 HG02896.hp2 HG02897.hp1 others(2): Show |
a0001a0002a0003others(1): Show | a0001c0003a0002c0001a0003c0006others(1): Show | a0001c0003t0004a0002c0001t0011a0003c0006t0009others(1): Show | a0001c0003t0004g0041a0002c0001t0011g0019a0002c0001t0011g0020others(2): Show | 5 | 62 | 0.0807 | -10 | c.156 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 9/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42363294 | ATATATAT others(3): Show |
A | intron_variant | MODIFIER | HG01243.hp1 NA19240.hp1 |
a0001 | a0001c0008a0001c0027 | a0001c0008t0001a0001c0027t0028 | a0001c0008t0001g0060a0001c0027t0028g0049 | 2 | 62 | 0.0323 | -10 | c.156 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 9/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42409481 | CAAAAAAA others(3): Show |
C | intron_variant | MODIFIER | HG02109.hp1 | a0001 | a0001c0003 | a0001c0003t0020 | a0001c0003t0020g0047 | 1 | 62 | 0.0161 | -10 | c.156 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 9/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42489008 | TTGTGTGT others(3): Show |
T | intron_variant | MODIFIER | HG00140.hp2 HG00438.hp1 HG02155.hp2 others(3): Show |
a0001a0002a0003 | a0001c0002a0002c0001a0002c0005others(1): Show | a0001c0002t0002a0002c0001t0002a0002c0001t0019others(3): Show | a0001c0002t0002g0031a0002c0001t0002g0025a0002c0001t0019g0023others(3): Show | 6 | 62 | 0.0968 | -10 | c.115 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 7/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42502405 | AACACACA others(3): Show |
A | intron_variant | MODIFIER | HG01257.hp2 HG02809.hp1 HG02886.hp2 others(7): Show |
a0001a0002a0006 | a0001c0002a0001c0008a0001c0023others(5): Show | a0001c0002t0006a0001c0002t0023a0001c0008t0005others(6): Show | a0001c0002t0006g0036a0001c0002t0006g0039a0001c0002t0023g0044others(7): Show | 10 | 62 | 0.1613 | -10 | c.115 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 7/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42526956 | CTTTTTTT others(3): Show |
C | intron_variant | MODIFIER | HG02155.hp2 | a0002 | a0002c0001 | a0002c0001t0019 | a0002c0001t0019g0023 | 1 | 62 | 0.0161 | -10 | c.115 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 7/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42569073 | AAAAAAAA others(3): Show |
A | intron_variant | MODIFIER | HG02622.hp1 HG02922.hp2 |
a0001a0005 | a0001c0031a0005c0028 | a0001c0031t0001a0005c0028t0027 | a0001c0031t0001g0056a0005c0028t0027g0042 | 2 | 62 | 0.0323 | -10 | c.115 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 7/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42590927 | CGTGTGTG others(3): Show |
C | intron_variant | MODIFIER | HG01243.hp2 HG02976.hp2 |
a0001a0006 | a0001c0003a0006c0019 | a0001c0003t0002a0006c0019t0008 | a0001c0003t0002g0043a0006c0019t0008g0050 | 2 | 62 | 0.0323 | -10 | c.115 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 7/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42590966 | GTGTGTGT others(3): Show |
G | intron_variant | MODIFIER | HG02280.hp1 HG02809.hp1 HG02886.hp2 others(3): Show |
a0001a0003 | a0001c0002a0001c0008a0001c0021others(2): Show | a0001c0002t0006a0001c0008t0005a0001c0021t0001others(2): Show | a0001c0002t0006g0036a0001c0002t0006g0039a0001c0008t0005g0037others(3): Show | 6 | 62 | 0.0968 | -10 | c.115 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 7/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42633784 | AATATATA others(3): Show |
A | intron_variant | MODIFIER | HG01243.hp2 | a0001 | a0001c0003 | a0001c0003t0002 | a0001c0003t0002g0043 | 1 | 62 | 0.0161 | -10 | c.115 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 7/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42646882 | CTTTTTTT others(3): Show |
C | intron_variant | MODIFIER | HG00438.hp1 HG00741.hp1 HG02109.hp1 others(5): Show |
a0001a0002a0004others(1): Show | a0001c0002a0001c0003a0001c0007others(5): Show | a0001c0002t0003a0001c0003t0020a0001c0007t0001others(5): Show | a0001c0002t0003g0040a0001c0003t0020g0047a0001c0007t0001g0061others(5): Show | 8 | 62 | 0.1290 | -10 | c.115 others(31): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 7/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42706175 | CTGTTTGT others(3): Show |
C | intron_variant | MODIFIER | HG02622.hp1 | a0001 | a0001c0031 | a0001c0031t0001 | a0001c0031t0001g0056 | 1 | 62 | 0.0161 | -10 | c.860 others(29): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 6/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42757052 | TAAAAAAA others(3): Show |
T | intron_variant | MODIFIER | HG02622.hp2 HG02965.hp2 |
a0002a0008 | a0002c0013a0008c0012 | a0002c0013t0001a0008c0012t0005 | a0002c0013t0001g0016a0008c0012t0005g0017 | 2 | 62 | 0.0323 | -10 | c.685 others(25): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 5/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 42767977 | TACACACA others(3): Show |
T | intron_variant | MODIFIER | HG01261.hp2 | a0007 | a0007c0010 | a0007c0010t0009 | a0007c0010t0009g0021 | 1 | 62 | 0.0161 | -10 | c.684 others(27): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 5/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 43083320 | GTATATAT others(3): Show |
G | intron_variant | MODIFIER | HG02976.hp1 NA21309.hp1 |
a0001a0002 | a0001c0023a0002c0016 | a0001c0023t0007a0002c0016t0030 | a0001c0023t0007g0034a0002c0016t0030g0014 | 2 | 62 | 0.0323 | -10 | c.88+ others(29): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 1/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 43087359 | CGTCCTTT others(3): Show |
C | intron_variant | MODIFIER | HG00140.hp1 HG00140.hp2 HG00438.hp2 others(22): Show |
a0001a0002a0004others(2): Show | a0001c0002a0001c0003a0001c0027others(9): Show | a0001c0002t0002a0001c0002t0006a0001c0002t0022others(19): Show | a0001c0002t0002g0031a0001c0002t0006g0036a0001c0002t0022g0055others(22): Show | 25 | 62 | 0.4032 | -10 | c.88+ others(29): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 1/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 43088333 | GGTGTGTG others(3): Show |
G | intron_variant | MODIFIER | HG01243.hp1 HG01261.hp2 HG02109.hp1 others(1): Show |
a0001a0007a0008 | a0001c0003a0001c0008a0007c0010others(1): Show | a0001c0003t0020a0001c0008t0001a0007c0010t0009others(1): Show | a0001c0003t0020g0047a0001c0008t0001g0060a0007c0010t0009g0021others(1): Show | 4 | 62 | 0.0645 | -10 | c.88+ others(29): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 1/30 | chr20 | TogoVar | ||||||
| PTPRT_chr20_42067756_43194906 | 43140443 | AGTGTGTG others(3): Show |
A | intron_variant | MODIFIER | HG01243.hp1 HG02622.hp1 HG02886.hp2 others(3): Show |
a0001a0004a0005 | a0001c0002a0001c0008a0001c0031others(2): Show | a0001c0002t0006a0001c0002t0014a0001c0008t0001others(3): Show | a0001c0002t0006g0036a0001c0002t0014g0052a0001c0008t0001g0060others(3): Show | 6 | 62 | 0.0968 | -10 | c.88+ others(27): Show |
PTPRT | ENSG00000196090.14 | transcript | ENST00000373187.6 | protein_coding | 1/30 | chr20 | TogoVar | ||||||
| PTPRU_chr1_29231522_29331800 | 29269238 | ATATATAT others(3): Show |
A | intron_variant | MODIFIER | HG02965.hp1 HG03540.hp2 |
a0003 | a0003c0007 | a0003c0007t0001 | a0003c0007t0001g0073a0003c0007t0001g0288 | 2 | 296 | 0.0068 | -10 | c.114 others(29): Show |
PTPRU | ENSG00000060656.20 | transcript | ENST00000373779.8 | protein_coding | 7/29 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
| PTPRU_chr1_29231522_29331800 | 29269242 | ATATATTT others(3): Show |
A | intron_variant | MODIFIER | HG02970.hp2 HG03516.hp1 HG03704.hp1 |
a0001a0002 | a0001c0005a0001c0023a0002c0002 | a0001c0005t0003a0001c0023t0011a0002c0002t0001 | a0001c0005t0003g0196a0001c0023t0011g0005a0002c0002t0001g0275 | 3 | 296 | 0.0101 | -10 | c.114 others(29): Show |
PTPRU | ENSG00000060656.20 | transcript | ENST00000373779.8 | protein_coding | 7/29 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
| PTPRU_chr1_29231522_29331800 | 29277803 | CTTTTTTT others(3): Show |
C | intron_variant | MODIFIER | HG01109.hp1 HG01109.hp2 HG01169.hp1 |
a0001a0002 | a0001c0001a0002c0004a0002c0016 | a0001c0001t0004a0002c0004t0002a0002c0016t0006 | a0001c0001t0004g0168a0002c0004t0002g0237a0002c0016t0006g0074 | 3 | 296 | 0.0101 | -10 | c.145 others(29): Show |
PTPRU | ENSG00000060656.20 | transcript | ENST00000373779.8 | protein_coding | 8/29 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
| PTPRU_chr1_29231522_29331800 | 29321196 | ATTTTTTT others(3): Show |
A | intron_variant | MODIFIER | HG00639.hp1 HG02723.hp1 HG02976.hp2 others(1): Show |
a0001a0002a0005others(1): Show | a0001c0013a0002c0004a0005c0017others(1): Show | a0001c0013t0004a0002c0004t0004a0005c0017t0004others(1): Show | a0001c0013t0004g0046a0002c0004t0004g0271a0005c0017t0004g0187others(1): Show | 4 | 296 | 0.0135 | -10 | c.382 others(27): Show |
PTPRU | ENSG00000060656.20 | transcript | ENST00000373779.8 | protein_coding | 26/29 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
| PTPRZ1_chr7_121868161_122067036 | 121886463 | AACACACA others(3): Show |
A | intron_variant | MODIFIER | HG00280.hp1 HG00408.hp1 HG00544.hp1 others(72): Show |
a0001a0003a0004others(5): Show | a0001c0001a0003c0003a0003c0019others(6): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(11): Show | a0001c0001t0001g0257a0001c0001t0002g0056a0001c0001t0002g0057others(72): Show | 75 | 312 | 0.2404 | -10 | c.58+ others(27): Show |
PTPRZ1 | ENSG00000106278.12 | transcript | ENST00000393386.7 | protein_coding | 1/29 | INFO_REALIGN_3_PRIME | chr7 | TogoVar |