Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

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Samplehapid

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No_samplehapid

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
RSU1_chr10_16585611_16822424	16733756	AAGCTTGA others(3): Show AAGCTTGAATG	A A	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0006 a0001c0001t0017g0006	1	190	0.0053	-10	c.598 others(29): Show c.598+18773_598+18782delCATTCAAGCT		RSU1	ENSG00000148484.18	transcript	ENST00000345264.10	protein_coding	7/8						chr10	TogoVar
RSU1_chr10_16585611_16822424	16768498	ACTCAGAT others(3): Show ACTCAGATATC	A A	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG01192.hp2 HG01358.hp1 others(30): Show HG00408.hp1 HG01192.hp2 HG01358.hp1 HG01884.hp1 HG02055.hp2 HG02071.hp2 HG02129.hp1 HG02145.hp2 HG02155.hp2 HG02257.hp2 HG02280.hp1 HG02451.hp1 HG02559.hp2 HG02647.hp2 HG02818.hp2 HG02886.hp1 HG02965.hp1 HG02970.hp1 HG03130.hp1 HG03130.hp2 HG03139.hp2 HG03209.hp2 HG03225.hp2 HG03453.hp1 HG03540.hp2 HG03579.hp1 HG06807.hp2 NA18906.hp1 NA18954.hp2 NA18960.hp2 NA19030.hp2 NA19060.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(18): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0009 a0001c0001t0011 a0001c0001t0016 a0001c0001t0023 a0001c0001t0024 a0001c0001t0028 a0001c0001t0037 a0001c0001t0044 a0001c0001t0049 a0001c0001t0050 a0001c0001t0057 a0001c0002t0001 a0001c0002t0002 a0001c0002t0011 a0001c0002t0019 a0001c0002t0020 a0001c0003t0001 a0001c0003t0005	a0001c0001t0001g0151 a0001c0001t0002g0040 a0001c0001t0002g0065 others(30): Show a0001c0001t0001g0151 a0001c0001t0002g0040 a0001c0001t0002g0065 a0001c0001t0004g0022 a0001c0001t0004g0035 a0001c0001t0004g0069 a0001c0001t0004g0074 a0001c0001t0009g0021 a0001c0001t0009g0044 a0001c0001t0011g0030 a0001c0001t0011g0032 a0001c0001t0016g0009 a0001c0001t0023g0118 a0001c0001t0024g0150 a0001c0001t0028g0008 a0001c0001t0037g0039 a0001c0001t0044g0077 a0001c0001t0049g0160 a0001c0001t0050g0161 a0001c0001t0057g0115 a0001c0002t0001g0088 a0001c0002t0002g0072 a0001c0002t0011g0071 a0001c0002t0019g0004 a0001c0002t0020g0073 a0001c0003t0001g0124 a0001c0003t0001g0127 a0001c0003t0001g0133 a0001c0003t0001g0134 a0001c0003t0001g0152 a0001c0003t0001g0164 a0001c0003t0001g0165 a0001c0003t0005g0135	33	190	0.1737	-10	c.161 others(27): Show c.161-3998_161-3989delGATATCTGAG		RSU1	ENSG00000148484.18	transcript	ENST00000345264.10	protein_coding	3/8						chr10	TogoVar
RTCA_chr1_100261216_100297769	100283947	AAAGAAAA others(3): Show AAAGAAAAAAC	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00408.hp1 HG00438.hp1 others(35): Show HG00140.hp1 HG00408.hp1 HG00438.hp1 HG00609.hp1 HG00621.hp1 HG01123.hp1 HG01123.hp2 HG01255.hp1 HG01255.hp2 HG01258.hp2 HG01433.hp1 HG01952.hp1 HG01952.hp2 HG02056.hp1 HG02293.hp1 HG02293.hp2 HG02300.hp2 HG02647.hp2 HG02886.hp1 HG03490.hp2 HG03579.hp2 HG03654.hp1 HG03710.hp2 HG04199.hp1 NA18956.hp2 NA18979.hp1 NA18979.hp2 NA18984.hp1 NA18984.hp2 NA18995.hp1 NA19000.hp1 NA19030.hp1 NA19066.hp1 NA19066.hp2 NA19067.hp1 NA19067.hp2 NA19072.hp1 NA20129.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0005 a0004c0004 a0001c0001 a0001c0005 a0004c0004	a0001c0001t0001 a0001c0001t0005 a0001c0001t0007 others(4): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0007 a0001c0001t0012 a0001c0001t0016 a0001c0005t0001 a0004c0004t0001	a0001c0001t0001g0009 a0001c0001t0001g0019 a0001c0001t0001g0027 others(33): Show a0001c0001t0001g0009 a0001c0001t0001g0019 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0056 a0001c0001t0001g0061 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0069 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0087 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0121 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0141 a0001c0001t0001g0142 a0001c0001t0001g0147 a0001c0001t0001g0150 a0001c0001t0005g0120 a0001c0001t0005g0137 a0001c0001t0005g0138 a0001c0001t0007g0065 a0001c0001t0012g0009 a0001c0001t0016g0027 a0001c0005t0001g0028 a0004c0004t0001g0009	38	296	0.1284	-10	c.800 others(27): Show c.800-1262_800-1253delACAAGAAAAA		RTCA	ENSG00000137996.13	transcript	ENST00000370128.9	protein_coding	8/10					INFO_REALIGN_3_PRIME	chr1	TogoVar
RTCA_chr1_100261216_100297769	100285177	AGTTTTGT others(3): Show AGTTTTGTTTT	A A	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	296	0.0034	-10	c.800 others(23): Show c.800-30_800-21delGTTTTGTTTT		RTCA	ENSG00000137996.13	transcript	ENST00000370128.9	protein_coding	8/10					INFO_REALIGN_3_PRIME	chr1	TogoVar
RTCA_chr1_100261216_100297769	100291929	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02622.hp1 HG02723.hp1 HG03225.hp2 HG02622.hp1 HG02723.hp1 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0181 a0001c0001t0009g0184 a0001c0001t0009g0185 a0001c0001t0009g0181 a0001c0001t0009g0184 a0001c0001t0009g0185	3	296	0.0101	-10	c.43 others(19): Show c.434_*443delTTTTTTTTTT		RTCA	ENSG00000137996.13	transcript	ENST00000370128.9	protein_coding	11/11				434	INFO_REALIGN_3_PRIME	chr1	TogoVar
RTEL1_chr20_63653312_63701245	63690130	CGTCCCCA others(3): Show CGTCCCCACGT	C C	frameshift_variant frameshift_variant	HIGH	HG01074.hp2 HG01074.hp2	a0006 a0006	a0006c0009 a0006c0009	a0006c0009t0002 a0006c0009t0002	a0006c0009t0002g0017 a0006c0009t0002g0017	1	60	0.0167	-10	c.218 others(19): Show c.2186_2195delGTCCCCACGT	p.Arg others(5): Show p.Arg729fs	RTEL1	ENSG00000258366.12	transcript	ENST00000360203.11	protein_coding	25/35	2511/4615	2186/3903	729/1300			chr20	TogoVar
RTF1_chr15_41412095_41488563	41415488	CTTGTATT others(3): Show CTTGTATTTCA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18961.hp2 NA18961.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0178 a0001c0001t0004g0178	1	226	0.0044	-10	c.-16 others(21): Show c.-1627_-1618delTTGTATTTCA		RTF1	ENSG00000137815.15	transcript	ENST00000389629.9	protein_coding					1606		chr15	TogoVar
RTF1_chr15_41412095_41488563	41426781	ATGTGTGT others(3): Show ATGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02293.hp2 HG02615.hp1 HG02896.hp2 others(1): Show HG02293.hp2 HG02615.hp1 HG02896.hp2 HG04199.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0014 others(1): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0014 a0001c0001t0020	a0001c0001t0001g0094 a0001c0001t0006g0105 a0001c0001t0014g0199 others(1): Show a0001c0001t0001g0094 a0001c0001t0006g0105 a0001c0001t0014g0199 a0001c0001t0020g0116	4	226	0.0177	-10	c.198 others(27): Show c.198+9504_198+9513delGTGTGTGTGT		RTF1	ENSG00000137815.15	transcript	ENST00000389629.9	protein_coding	1/17					INFO_REALIGN_3_PRIME	chr15	TogoVar
RTF1_chr15_41412095_41488563	41428257	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00323.hp2 others(27): Show HG00099.hp2 HG00140.hp1 HG00323.hp2 HG00639.hp1 HG00642.hp1 HG00642.hp2 HG00741.hp2 HG01074.hp2 HG01081.hp1 HG01358.hp1 HG01361.hp1 HG01515.hp1 HG01975.hp1 HG02055.hp2 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02602.hp2 HG02809.hp2 HG02922.hp2 HG02965.hp2 HG03130.hp1 HG03195.hp1 HG03486.hp2 HG03492.hp2 HG03942.hp2 HG04184.hp1 HG04228.hp1 NA19060.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0012 a0001c0001t0016 others(1): Show a0001c0001t0003 a0001c0001t0012 a0001c0001t0016 a0001c0001t0017	a0001c0001t0003g0002 a0001c0001t0003g0017 a0001c0001t0003g0018 others(27): Show a0001c0001t0003g0002 a0001c0001t0003g0017 a0001c0001t0003g0018 a0001c0001t0003g0019 a0001c0001t0003g0020 a0001c0001t0003g0149 a0001c0001t0003g0151 a0001c0001t0003g0153 a0001c0001t0003g0156 a0001c0001t0003g0157 a0001c0001t0003g0158 a0001c0001t0003g0159 a0001c0001t0003g0160 a0001c0001t0003g0161 a0001c0001t0003g0162 a0001c0001t0003g0163 a0001c0001t0003g0164 a0001c0001t0003g0166 a0001c0001t0003g0167 a0001c0001t0003g0169 a0001c0001t0003g0170 a0001c0001t0003g0172 a0001c0001t0003g0173 a0001c0001t0003g0174 a0001c0001t0012g0021 a0001c0001t0012g0168 a0001c0001t0012g0171 a0001c0001t0016g0150 a0001c0001t0016g0154 a0001c0001t0017g0155	30	226	0.1327	-10	c.199 others(29): Show c.199-10045_199-10036delTTTTTTTTTT		RTF1	ENSG00000137815.15	transcript	ENST00000389629.9	protein_coding	1/17					INFO_REALIGN_3_PRIME	chr15	TogoVar
RTF2_chr20_56463627_56524449	56503469	ACAAATGG others(3): Show ACAAATGGTAG	A A	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02895.hp2 HG03486.hp1 HG02809.hp1 HG02895.hp2 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157	3	388	0.0077	-10	c.478 others(27): Show c.478-9843_478-9834delAATGGTAGCA		RTF2	ENSG00000022277.13	transcript	ENST00000357348.10	protein_coding	5/8					INFO_REALIGN_3_PRIME	chr20	TogoVar
RTF2_chr20_56463627_56524449	56515593	GAGAGAGA others(3): Show GAGAGAGACAC	G G	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00544.hp2 HG00738.hp2 others(32): Show HG00280.hp1 HG00544.hp2 HG00738.hp2 HG01099.hp2 HG01109.hp1 HG01175.hp2 HG01257.hp2 HG01258.hp2 HG01346.hp2 HG01358.hp2 HG01516.hp1 HG01517.hp1 HG01928.hp1 HG01978.hp2 HG02055.hp2 HG02602.hp2 HG03017.hp2 HG03710.hp1 HG03834.hp2 HG03942.hp2 NA18612.hp1 NA18946.hp2 NA18959.hp2 NA18969.hp2 NA18980.hp1 NA19005.hp1 NA19043.hp2 NA19063.hp2 NA19080.hp1 NA19082.hp1 NA19084.hp2 NA20129.hp1 NA20129.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0004 a0001c0001t0002g0009 a0001c0001t0002g0015 others(19): Show a0001c0001t0002g0004 a0001c0001t0002g0009 a0001c0001t0002g0015 a0001c0001t0002g0034 a0001c0001t0002g0037 a0001c0001t0002g0045 a0001c0001t0002g0172 a0001c0001t0002g0179 a0001c0001t0002g0184 a0001c0001t0002g0188 a0001c0001t0002g0198 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0206 a0001c0001t0002g0210 a0001c0001t0002g0217 a0001c0001t0002g0218 a0001c0001t0002g0220 a0001c0001t0002g0223	35	388	0.0902	-10	c.592 others(27): Show c.592-1340_592-1331delGAGAGACACA		RTF2	ENSG00000022277.13	transcript	ENST00000357348.10	protein_coding	6/8					INFO_REALIGN_3_PRIME	chr20	TogoVar
RTF2_chr20_56463627_56524449	56515595	GAGAGACA others(3): Show GAGAGACACAC	G G	intron_variant intron_variant	MODIFIER	HG03669.hp1 HG04228.hp1 HG03669.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0204 a0001c0001t0002g0209 a0001c0001t0002g0204 a0001c0001t0002g0209	2	388	0.0052	-10	c.592 others(27): Show c.592-1338_592-1329delGAGACACACA		RTF2	ENSG00000022277.13	transcript	ENST00000357348.10	protein_coding	6/8					INFO_REALIGN_3_PRIME	chr20	TogoVar
RTKN2_chr10_62188086_62273844	62204663	TATACTAT others(3): Show TATACTATACA	T T	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0031 a0002c0003t0031	a0002c0003t0031g0177 a0002c0003t0031g0177	1	262	0.0038	-10	c.118 others(27): Show c.1186+184_1186+193delTGTATAGTAT		RTKN2	ENSG00000182010.11	transcript	ENST00000373789.8	protein_coding	10/11						chr10	TogoVar
RTKN2_chr10_62188086_62273844	62218823	TAAAAATA others(3): Show TAAAAATACAA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00140.hp2 others(175): Show HG00099.hp1 HG00140.hp1 HG00140.hp2 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00738.hp2 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01071.hp1 HG01071.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01261.hp1 HG01261.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01943.hp2 HG02040.hp2 HG02055.hp1 HG02071.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp1 HG03471.hp1 HG03490.hp1 HG03491.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03688.hp2 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03927.hp1 HG03927.hp2 HG03942.hp2 HG04115.hp2 HG04184.hp1 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18942.hp2 NA18948.hp2 NA18950.hp1 NA18951.hp1 NA18951.hp2 NA18953.hp2 NA18955.hp1 NA18955.hp2 NA18957.hp1 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18973.hp2 NA18974.hp2 NA18999.hp2 NA19003.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp2 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19057.hp1 NA19058.hp1 NA19060.hp1 NA19060.hp2 NA19062.hp2 NA19072.hp1 NA19072.hp2 NA19074.hp2 NA19079.hp1 NA19079.hp2 NA19082.hp1 NA19082.hp2 NA19084.hp1 NA19086.hp2 NA19089.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0006 a0008 a0009 a0010	a0001c0001 a0001c0008 a0001c0014 others(7): Show a0001c0001 a0001c0008 a0001c0014 a0002c0003 a0002c0011 a0003c0002 a0006c0007 a0008c0012 a0009c0010 a0010c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(70): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0046 a0001c0001t0047 a0001c0001t0048 a0001c0001t0049 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0008t0017 a0001c0008t0036 a0001c0014t0045 a0002c0003t0008 a0002c0003t0020 a0002c0003t0021 a0002c0003t0028 a0002c0003t0030 a0002c0003t0032 a0002c0003t0033 a0002c0003t0035 a0002c0003t0063 a0002c0003t0064 a0002c0003t0066 a0002c0003t0067 a0002c0003t0068 a0002c0003t0069 a0002c0003t0074 a0002c0003t0075 a0002c0003t0078 a0002c0003t0081 a0002c0003t0084 a0002c0011t0055 a0003c0002t0004 a0003c0002t0008 a0003c0002t0009 a0003c0002t0015 a0003c0002t0028 a0003c0002t0029 a0003c0002t0056 a0003c0002t0058 a0003c0002t0062 a0003c0002t0070 a0003c0002t0071 a0003c0002t0072 a0003c0002t0073 a0003c0002t0076 a0003c0002t0077 a0003c0002t0080 a0003c0002t0094 a0006c0007t0006 a0006c0007t0007 a0006c0007t0036 a0006c0007t0082 a0008c0012t0003 a0009c0010t0009 a0010c0013t0003	a0001c0001t0001g0002 a0001c0001t0001g0008 a0001c0001t0001g0009 others(156): Show a0001c0001t0001g0002 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0022 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0040 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0063 a0001c0001t0001g0066 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0090 a0001c0001t0001g0097 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0003g0001 a0001c0001t0003g0006 a0001c0001t0003g0023 a0001c0001t0003g0025 a0001c0001t0003g0027 a0001c0001t0003g0031 a0001c0001t0003g0037 a0001c0001t0003g0054 a0001c0001t0003g0058 a0001c0001t0003g0061 a0001c0001t0003g0067 a0001c0001t0003g0100 a0001c0001t0005g0055 a0001c0001t0005g0072 a0001c0001t0005g0076 a0001c0001t0005g0080 a0001c0001t0005g0083 a0001c0001t0005g0089 a0001c0001t0005g0098 a0001c0001t0005g0099 a0001c0001t0005g0101 a0001c0001t0005g0102 a0001c0001t0005g0103 a0001c0001t0006g0222 a0001c0001t0011g0004 a0001c0001t0011g0046 a0001c0001t0012g0007 a0001c0001t0012g0051 a0001c0001t0012g0073 a0001c0001t0013g0064 a0001c0001t0013g0088 a0001c0001t0013g0092 a0001c0001t0013g0096 a0001c0001t0014g0048 a0001c0001t0014g0065 a0001c0001t0014g0107 a0001c0001t0022g0039 a0001c0001t0022g0093 a0001c0001t0023g0024 a0001c0001t0023g0068 a0001c0001t0024g0050 a0001c0001t0024g0079 a0001c0001t0025g0049 a0001c0001t0025g0071 a0001c0001t0026g0042 a0001c0001t0026g0087 a0001c0001t0027g0094 a0001c0001t0027g0095 a0001c0001t0041g0038 a0001c0001t0042g0081 a0001c0001t0043g0082 a0001c0001t0044g0045 a0001c0001t0046g0085 a0001c0001t0047g0062 a0001c0001t0048g0028 a0001c0001t0049g0053 a0001c0001t0050g0074 a0001c0001t0051g0026 a0001c0001t0052g0044 a0001c0001t0053g0086 a0001c0008t0017g0189 a0001c0008t0036g0203 a0001c0014t0045g0105 a0002c0003t0008g0199 a0002c0003t0020g0047 a0002c0003t0020g0077 a0002c0003t0021g0029 a0002c0003t0021g0030 a0002c0003t0028g0152 a0002c0003t0030g0162 a0002c0003t0032g0150 a0002c0003t0032g0154 a0002c0003t0033g0153 a0002c0003t0033g0164 a0002c0003t0035g0158 a0002c0003t0035g0159 a0002c0003t0063g0108 a0002c0003t0064g0111 a0002c0003t0066g0163 a0002c0003t0067g0161 a0002c0003t0068g0157 a0002c0003t0069g0160 a0002c0003t0074g0155 a0002c0003t0075g0151 a0002c0003t0078g0113 a0002c0003t0081g0170 a0002c0003t0084g0156 a0002c0011t0055g0149 a0003c0002t0004g0005 a0003c0002t0004g0014 a0003c0002t0004g0110 a0003c0002t0004g0119 a0003c0002t0004g0120 a0003c0002t0004g0121 a0003c0002t0004g0124 a0003c0002t0004g0132 a0003c0002t0008g0010 a0003c0002t0008g0011 a0003c0002t0008g0012 a0003c0002t0008g0128 a0003c0002t0009g0114 a0003c0002t0009g0138 a0003c0002t0009g0139 a0003c0002t0009g0140 a0003c0002t0009g0141 a0003c0002t0009g0142 a0003c0002t0009g0146 a0003c0002t0015g0013 a0003c0002t0015g0122 a0003c0002t0028g0133 a0003c0002t0029g0118 a0003c0002t0029g0134 a0003c0002t0056g0127 a0003c0002t0058g0135 a0003c0002t0062g0126 a0003c0002t0070g0117 a0003c0002t0071g0112 a0003c0002t0072g0130 a0003c0002t0073g0129 a0003c0002t0076g0123 a0003c0002t0077g0125 a0003c0002t0080g0143 a0003c0002t0094g0115 a0006c0007t0006g0136 a0006c0007t0006g0137 a0006c0007t0006g0145 a0006c0007t0006g0148 a0006c0007t0007g0116 a0006c0007t0036g0144 a0006c0007t0082g0131 a0008c0012t0003g0084 a0009c0010t0009g0147 a0010c0013t0003g0091	178	262	0.6794	-10	c.782 others(25): Show c.782-532_782-523delTTGTATTTTT		RTKN2	ENSG00000182010.11	transcript	ENST00000373789.8	protein_coding	7/11						chr10	TogoVar
RTKN_chr2_74420835_74446937	74443607	TATAGATA others(3): Show TATAGATATAG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG03834.hp1 HG00544.hp2 HG03834.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0008c0006 a0001c0001 a0008c0006	a0001c0001t0001 a0008c0006t0001 a0001c0001t0001 a0008c0006t0001	a0001c0001t0001g0001 a0008c0006t0001g0079 a0001c0001t0001g0001 a0008c0006t0001g0079	2	382	0.0052	-10	c.-18 others(21): Show c.-1801_-1792delCTATATCTAT		RTKN	ENSG00000114993.17	transcript	ENST00000272430.10	protein_coding					1671		chr2	TogoVar
RTL1_chr14_100874753_100908722	100894317	AAAAAAAA others(3): Show AAAAAAAAAAG	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00735.hp2 HG01074.hp1 others(7): Show HG00140.hp2 HG00735.hp2 HG01074.hp1 HG01074.hp2 HG01106.hp2 HG01167.hp1 HG01169.hp1 HG02015.hp1 HG03710.hp1 HG03834.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0012	a0001c0001 a0001c0012 a0002c0002 others(2): Show a0001c0001 a0001c0012 a0002c0002 a0003c0005 a0012c0022	a0001c0001t0001 a0001c0001t0006 a0001c0012t0001 others(6): Show a0001c0001t0001 a0001c0001t0006 a0001c0012t0001 a0002c0002t0003 a0002c0002t0006 a0002c0002t0008 a0003c0005t0003 a0003c0005t0005 a0012c0022t0007	a0001c0001t0001g0357 a0001c0001t0006g0059 a0001c0012t0001g0063 others(7): Show a0001c0001t0001g0357 a0001c0001t0006g0059 a0001c0012t0001g0063 a0002c0002t0003g0083 a0002c0002t0003g0084 a0002c0002t0006g0031 a0002c0002t0008g0060 a0003c0005t0003g0099 a0003c0005t0005g0358 a0012c0022t0007g0061	10	430	0.0233	-10	c.-14 others(27): Show c.-148-822_-148-813delCTTTTTTTTT		RTL1	ENSG00000254656.3	transcript	ENST00000649591.1	protein_coding	2/3						chr14	TogoVar
RTL4_chrX_112078016_112462514	112080395	TACACACA others(3): Show TACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02280.hp2 HG02630.hp1 HG06807.hp1 HG02280.hp2 HG02630.hp1 HG06807.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0002c0001 a0001c0002 a0001c0003 a0002c0001	a0001c0002t0002 a0001c0003t0003 a0002c0001t0001 a0001c0002t0002 a0001c0003t0003 a0002c0001t0001	a0001c0002t0002g0025 a0001c0003t0003g0013 a0002c0001t0001g0020 a0001c0002t0002g0025 a0001c0003t0003g0013 a0002c0001t0001g0020	3	134	0.0224	-10	c.-32 others(21): Show c.-3285_-3276delACACACACAC		RTL4	ENSG00000187823.4	transcript	ENST00000695839.1	protein_coding					2620		chrX	TogoVar
RTL4_chrX_112078016_112462514	112082825	GAGAGAGA others(3): Show GAGAGAGAGAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01106.hp1 HG01168.hp1 HG06807.hp1 HG01106.hp1 HG01168.hp1 HG06807.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0002 a0002c0001 a0003c0004 a0001c0002 a0002c0001 a0003c0004	a0001c0002t0002 a0002c0001t0001 a0003c0004t0001 a0001c0002t0002 a0002c0001t0001 a0003c0004t0001	a0001c0002t0002g0025 a0002c0001t0001g0014 a0003c0004t0001g0034 a0001c0002t0002g0025 a0002c0001t0001g0014 a0003c0004t0001g0034	3	134	0.0224	-10	c.-85 others(19): Show c.-855_-846delAGAGAGAGAA		RTL4	ENSG00000187823.4	transcript	ENST00000695839.1	protein_coding					190		chrX	TogoVar
RTL4_chrX_112078016_112462514	112100373	GATTGTTA others(3): Show GATTGTTAGGA	G G	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01928.hp1 NA19006.hp1 HG01256.hp1 HG01928.hp1 NA19006.hp1	a0002 a0003 a0002 a0003	a0002c0001 a0003c0004 a0002c0001 a0003c0004	a0002c0001t0001 a0002c0001t0013 a0003c0004t0012 a0002c0001t0001 a0002c0001t0013 a0003c0004t0012	a0002c0001t0001g0053 a0002c0001t0013g0122 a0003c0004t0012g0052 a0002c0001t0001g0053 a0002c0001t0013g0122 a0003c0004t0012g0052	3	134	0.0224	-10	c.-56 others(31): Show c.-564+17258_-564+17267delTTGTTAGGAA		RTL4	ENSG00000187823.4	transcript	ENST00000695839.1	protein_coding	1/4					INFO_REALIGN_3_PRIME	chrX	TogoVar
RTL4_chrX_112078016_112462514	112291367	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02622.hp1 HG02976.hp1 others(3): Show HG02572.hp1 HG02622.hp1 HG02976.hp1 HG03139.hp1 HG03209.hp1 NA19030.hp2	a0001 a0005 a0001 a0005	a0001c0002 a0001c0003 a0005c0006 a0001c0002 a0001c0003 a0005c0006	a0001c0002t0002 a0001c0002t0004 a0001c0002t0019 others(2): Show a0001c0002t0002 a0001c0002t0004 a0001c0002t0019 a0001c0003t0005 a0005c0006t0002	a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0004g0031 others(3): Show a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0004g0031 a0001c0002t0019g0127 a0001c0003t0005g0016 a0005c0006t0002g0009	6	134	0.0448	-10	c.-44 others(31): Show c.-444-14960_-444-14951delCACACACACA		RTL4	ENSG00000187823.4	transcript	ENST00000695839.1	protein_coding	2/4					INFO_REALIGN_3_PRIME	chrX	TogoVar
RTL4_chrX_112078016_112462514	112390106	AATATATA others(3): Show AATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA19004.hp1 NA19004.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0074 a0002c0001t0001g0074	1	134	0.0075	-10	c.-28 others(31): Show c.-284-40963_-284-40954delATATATATAT		RTL4	ENSG00000187823.4	transcript	ENST00000695839.1	protein_coding	3/4					INFO_REALIGN_3_PRIME	chrX	TogoVar
RTL4_chrX_112078016_112462514	112419337	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG03195.hp2 NA19030.hp2 HG02257.hp1 HG03195.hp2 NA19030.hp2	a0001 a0005 a0001 a0005	a0001c0002 a0005c0006 a0001c0002 a0005c0006	a0001c0002t0002 a0001c0002t0007 a0005c0006t0002 a0001c0002t0002 a0001c0002t0007 a0005c0006t0002	a0001c0002t0002g0113 a0001c0002t0007g0128 a0005c0006t0002g0009 a0001c0002t0002g0113 a0001c0002t0007g0128 a0005c0006t0002g0009	3	134	0.0224	-10	c.-28 others(31): Show c.-284-11745_-284-11736delTTTTTTTTTT		RTL4	ENSG00000187823.4	transcript	ENST00000695839.1	protein_coding	3/4					INFO_REALIGN_3_PRIME	chrX	TogoVar
RTL5_chrX_72122110_72136915	72124140	CCATTAAG others(3): Show CCATTAAGGGG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01109.hp1 HG02257.hp1 HG02258.hp1 others(5): Show HG01109.hp1 HG02257.hp1 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02615.hp1 HG03225.hp1 HG03579.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0005 a0001c0005t0008 a0001c0005t0005 a0001c0005t0008	a0001c0005t0005g0000 a0001c0005t0008g0000 a0001c0005t0005g0000 a0001c0005t0008g0000	8	308	0.0260	-10	c.56 others(21): Show c.5681_*5690delCCCCTTAATG		RTL5	ENSG00000242732.6	transcript	ENST00000609883.3	protein_coding					2969		chrX	TogoVar
RTL8A_chrX_135045932_135057135	135055284	AATATATA others(3): Show AATATATATAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03834.hp1 HG04228.hp1 HG03834.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	2	318	0.0063	-10	c.-31 others(21): Show c.-3186_-3177delATATATATAT		RTL8A	ENSG00000203950.7	transcript	ENST00000370775.3	protein_coding					3150		chrX	TogoVar
RTN1_chr14_59590983_59875776	59606103	GATATATA others(3): Show GATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00735.hp2 HG01175.hp1 others(58): Show HG00099.hp2 HG00735.hp2 HG01175.hp1 HG01243.hp2 HG01261.hp1 HG01346.hp2 HG01358.hp2 HG01952.hp2 HG01981.hp1 HG01993.hp2 HG02040.hp1 HG02055.hp1 HG02074.hp1 HG02080.hp2 HG02145.hp2 HG02155.hp2 HG02257.hp1 HG02258.hp1 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02622.hp1 HG02630.hp1 HG02683.hp1 HG02717.hp1 HG02717.hp2 HG02809.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp2 HG03017.hp2 HG03130.hp1 HG03209.hp2 HG03516.hp1 HG03579.hp2 HG03669.hp2 HG03942.hp2 HG04228.hp2 NA18612.hp1 NA18906.hp2 NA18964.hp1 NA18977.hp1 NA18981.hp1 NA18983.hp1 NA18984.hp1 NA18995.hp1 NA18999.hp2 NA19004.hp2 NA19009.hp2 NA19011.hp1 NA19012.hp2 NA19068.hp1 NA19070.hp2 NA19079.hp1 NA19082.hp1 NA19083.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19088.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0005	a0001c0001 a0001c0007 a0003c0004 others(2): Show a0001c0001 a0001c0007 a0003c0004 a0004c0005 a0005c0006	a0001c0001t0001 a0001c0007t0005 a0003c0004t0001 others(2): Show a0001c0001t0001 a0001c0007t0005 a0003c0004t0001 a0004c0005t0001 a0005c0006t0001	a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0016 others(58): Show a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0027 a0001c0001t0001g0031 a0001c0001t0001g0039 a0001c0001t0001g0044 a0001c0001t0001g0050 a0001c0001t0001g0063 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0073 a0001c0001t0001g0078 a0001c0001t0001g0092 a0001c0001t0001g0103 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0141 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0168 a0001c0007t0005g0071 a0003c0004t0001g0040 a0003c0004t0001g0080 a0003c0004t0001g0081 a0004c0005t0001g0030 a0005c0006t0001g0107	61	172	0.3547	-10	c.197 others(27): Show c.1974-607_1974-598delATATATATAT		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	4/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59656675	TCTGGAAC others(3): Show TCTGGAACTCC	T T	intron_variant intron_variant	MODIFIER	NA18977.hp1 NA18977.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0119 a0001c0001t0001g0119	1	172	0.0058	-10	c.176 others(31): Show c.1766-49193_1766-49184delGGAGTTCCAG		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	3/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59672625	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02895.hp2 HG03209.hp2 HG02717.hp1 HG02895.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0161 a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0161	3	172	0.0174	-10	c.176 others(31): Show c.1765+54284_1765+54293delAAAAAAAAAA		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	3/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59745647	TTAGGGAT others(3): Show TTAGGGATTGA	T T	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0131 a0001c0001t0001g0131	1	172	0.0058	-10	c.101 others(25): Show c.1015+51_1015+60delTCAATCCCTA		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	2/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59749184	CTATCTAT others(3): Show CTATCTATATA	C C	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01346.hp1 NA18747.hp2 others(2): Show HG01081.hp2 HG01346.hp1 NA18747.hp2 NA18984.hp2 NA19082.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0064 a0001c0001t0001g0093 others(2): Show a0001c0001t0001g0008 a0001c0001t0001g0064 a0001c0001t0001g0093 a0001c0001t0001g0098 a0001c0001t0001g0149	5	172	0.0291	-10	c.242 others(27): Show c.242-2713_242-2704delTATATAGATA		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	1/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59749268	ATATATAT others(3): Show ATATATATATC	A A	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01433.hp2 HG01261.hp2 HG01433.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0003 a0001c0001t0003g0167 a0001c0001t0002g0003 a0001c0001t0003g0167	2	172	0.0116	-10	c.242 others(27): Show c.242-2797_242-2788delGATATATATA		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	1/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59749310	ATATATAT others(3): Show ATATATATATC	A A	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02723.hp2 HG03139.hp1 others(2): Show HG01243.hp1 HG02723.hp2 HG03139.hp1 HG03540.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0135 others(2): Show a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0140	5	172	0.0291	-10	c.242 others(27): Show c.242-2839_242-2830delGATATATATA		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	1/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59749368	ATCTATAT others(3): Show ATCTATATATC	A A	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0149 a0001c0001t0001g0149	1	172	0.0058	-10	c.242 others(27): Show c.242-2897_242-2888delGATATATAGA		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	1/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59749404	CTATATCT others(3): Show CTATATCTATA	C C	intron_variant intron_variant	MODIFIER	NA19086.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0123 a0001c0001t0001g0123	1	172	0.0058	-10	c.242 others(27): Show c.242-2933_242-2924delTATAGATATA		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	1/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59749473	CTATATAT others(3): Show CTATATATCTA	C C	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0150 a0001c0001t0001g0150	1	172	0.0058	-10	c.242 others(27): Show c.242-3002_242-2993delTAGATATATA		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	1/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59749725	CTATATAT others(3): Show CTATATATTTA	C C	intron_variant intron_variant	MODIFIER	NA18984.hp2 NA19082.hp2 NA18984.hp2 NA19082.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0064 a0001c0001t0001g0093 a0001c0001t0001g0064 a0001c0001t0001g0093	2	172	0.0116	-10	c.242 others(27): Show c.242-3254_242-3245delTAAATATATA		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	1/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59750363	ATATTATA others(3): Show ATATTATATCT	A A	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG02145.hp1 NA18906.hp1 HG01496.hp1 HG02145.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0156 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0156	3	172	0.0174	-10	c.242 others(27): Show c.242-3892_242-3883delAGATATAATA		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	1/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59792359	TCACACAC others(3): Show TCACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01358.hp1 HG03540.hp1 HG01081.hp1 HG01358.hp1 HG03540.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0004 a0001c0001t0001 a0002c0002t0004	a0001c0001t0001g0134 a0002c0002t0004g0128 a0002c0002t0004g0129 a0001c0001t0001g0134 a0002c0002t0004g0128 a0002c0002t0004g0129	3	172	0.0174	-10	c.242 others(29): Show c.242-45888_242-45879delTGTGTGTGTG		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	1/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59819405	ACCACCAC others(3): Show ACCACCACCAC	A A	intron_variant intron_variant	MODIFIER	NA19012.hp2 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0120 a0001c0001t0001g0120	1	172	0.0058	-10	c.241 others(29): Show c.241+50975_241+50984delGTGGTGGTGG		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	1/8						chr14	TogoVar
RTN1_chr14_59590983_59875776	59819422	CCCACCCC others(3): Show CCCACCCCCCA	C C	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG02280.hp1 HG02622.hp2 others(4): Show HG01433.hp1 HG02280.hp1 HG02622.hp2 HG03209.hp1 NA18955.hp2 NA18984.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0035 a0001c0001t0001g0059 a0001c0001t0001g0064 others(4): Show a0001c0001t0001g0035 a0001c0001t0001g0059 a0001c0001t0001g0064 a0001c0001t0001g0076 a0001c0001t0001g0079 a0001c0001t0001g0091 a0001c0001t0001g0100	7	172	0.0407	-10	c.241 others(29): Show c.241+50958_241+50967delTGGGGGGTGG		RTN1	ENSG00000139970.18	transcript	ENST00000267484.10	protein_coding	1/8						chr14	TogoVar
RTN2_chr19_45480294_45502047	45490459	ATATTCTC others(3): Show ATATTCTCACC	A A	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0064 a0001c0001t0004g0064	1	432	0.0023	-10	c.103 others(27): Show c.1034-916_1034-907delGGTGAGAATA		RTN2	ENSG00000125744.12	transcript	ENST00000245923.9	protein_coding	5/10						chr19	TogoVar
RTN2_chr19_45480294_45502047	45491360	ATTTTTTT others(3): Show ATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA19076.hp1 NA19076.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0187 a0001c0001t0001g0187	1	432	0.0023	-10	c.103 others(29): Show c.1033+1790_1033+1799delAAAAAAAAAA		RTN2	ENSG00000125744.12	transcript	ENST00000245923.9	protein_coding	5/10						chr19	TogoVar
RTN2_chr19_45480294_45502047	45497698	GTATATAT others(3): Show GTATATATATA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp1 HG02040.hp2 HG02451.hp2 others(19): Show HG00642.hp1 HG02040.hp2 HG02451.hp2 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03710.hp1 NA18946.hp1 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18978.hp2 NA18994.hp2 NA19004.hp1 NA19055.hp2 NA19083.hp2 NA19086.hp1 NA19086.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0006 a0001c0001 a0001c0005 a0001c0006	a0001c0001t0002 a0001c0005t0001 a0001c0006t0004 a0001c0001t0002 a0001c0005t0001 a0001c0006t0004	a0001c0001t0002g0004 a0001c0001t0002g0011 a0001c0001t0002g0054 others(17): Show a0001c0001t0002g0004 a0001c0001t0002g0011 a0001c0001t0002g0054 a0001c0001t0002g0056 a0001c0001t0002g0197 a0001c0001t0002g0219 a0001c0001t0002g0220 a0001c0001t0002g0221 a0001c0001t0002g0222 a0001c0001t0002g0223 a0001c0001t0002g0227 a0001c0001t0002g0236 a0001c0001t0002g0239 a0001c0001t0002g0240 a0001c0001t0002g0241 a0001c0001t0002g0242 a0001c0001t0002g0243 a0001c0001t0002g0244 a0001c0005t0001g0194 a0001c0006t0004g0065	22	432	0.0509	-10	c.-88 others(19): Show c.-883_-874delTATATATATA		RTN2	ENSG00000125744.12	transcript	ENST00000245923.9	protein_coding					652		chr19	TogoVar
RTN3_chr11_63676500_63764882	63684129	GTTTTTTT others(3): Show GTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG01516.hp2 HG02015.hp2 NA18983.hp1 HG01516.hp2 HG02015.hp2 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0044 a0001c0001t0001g0159 a0001c0001t0001g0021 a0001c0001t0001g0044 a0001c0001t0001g0159	3	170	0.0177	-10	c.142 others(27): Show c.142+2367_142+2376delTTTTTTTTTT		RTN3	ENSG00000133318.14	transcript	ENST00000377819.10	protein_coding	1/8					INFO_REALIGN_3_PRIME	chr11	TogoVar
RTN3_chr11_63676500_63764882	63686453	AGAGCGAG others(3): Show AGAGCGAGACT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02886.hp2 HG02965.hp2 others(2): Show HG01109.hp2 HG02886.hp2 HG02965.hp2 HG02976.hp2 HG03471.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0137 a0002c0002t0001g0138 a0002c0002t0001g0146 others(2): Show a0002c0002t0001g0137 a0002c0002t0001g0138 a0002c0002t0001g0146 a0002c0002t0001g0149 a0002c0002t0001g0150	5	170	0.0294	-10	c.142 others(27): Show c.142+4676_142+4685delGAGCGAGACT		RTN3	ENSG00000133318.14	transcript	ENST00000377819.10	protein_coding	1/8						chr11	TogoVar
RTN3_chr11_63676500_63764882	63734734	AACACACA others(3): Show AACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02809.hp1 HG03927.hp1 others(1): Show HG02258.hp2 HG02809.hp1 HG03927.hp1 NA20805.hp2	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0001 a0003c0003t0001 a0002c0002t0001 a0003c0003t0001	a0002c0002t0001g0019 a0002c0002t0001g0024 a0002c0002t0001g0030 others(1): Show a0002c0002t0001g0019 a0002c0002t0001g0024 a0002c0002t0001g0030 a0003c0003t0001g0009	4	170	0.0235	-10	c.253 others(31): Show c.2530+13741_2530+13750delACACACACAC		RTN3	ENSG00000133318.14	transcript	ENST00000377819.10	protein_coding	3/8					INFO_REALIGN_3_PRIME	chr11	TogoVar
RTN4IP1_chr6_106565771_106634498	106572779	TTTGTTTT others(3): Show TTTGTTTTTTC	T T	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00639.hp2 HG01106.hp2 others(59): Show HG00280.hp2 HG00639.hp2 HG01106.hp2 HG01192.hp2 HG01255.hp1 HG01361.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG02055.hp1 HG02074.hp2 HG02135.hp2 HG02148.hp2 HG02280.hp1 HG02451.hp2 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02717.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02895.hp2 HG02897.hp1 HG02965.hp1 HG02970.hp2 HG03130.hp2 HG03139.hp1 HG03486.hp2 HG03516.hp1 HG03927.hp1 HG04199.hp2 NA18522.hp1 NA18522.hp2 NA18747.hp1 NA18906.hp1 NA18942.hp1 NA18945.hp1 NA18950.hp2 NA18966.hp1 NA18971.hp2 NA18972.hp2 NA18974.hp1 NA18979.hp1 NA18985.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp2 NA19010.hp2 NA19012.hp1 NA19058.hp2 NA19060.hp2 NA19064.hp1 NA19066.hp1 NA19070.hp1 NA19072.hp1 NA19078.hp2 NA19081.hp1 NA19082.hp1 NA19088.hp1 NA19089.hp2 NA19240.hp1	a0001 a0005 a0001 a0005	a0001c0003 a0001c0005 a0005c0010 a0001c0003 a0001c0005 a0005c0010	a0001c0003t0004 a0001c0003t0012 a0001c0005t0009 others(1): Show a0001c0003t0004 a0001c0003t0012 a0001c0005t0009 a0005c0010t0013	a0001c0003t0004g0012 a0001c0003t0004g0014 a0001c0003t0004g0015 others(56): Show a0001c0003t0004g0012 a0001c0003t0004g0014 a0001c0003t0004g0015 a0001c0003t0004g0142 a0001c0003t0004g0143 a0001c0003t0004g0154 a0001c0003t0004g0155 a0001c0003t0004g0156 a0001c0003t0004g0157 a0001c0003t0004g0158 a0001c0003t0004g0159 a0001c0003t0004g0166 a0001c0003t0004g0167 a0001c0003t0004g0168 a0001c0003t0004g0169 a0001c0003t0004g0170 a0001c0003t0004g0171 a0001c0003t0004g0172 a0001c0003t0004g0173 a0001c0003t0004g0174 a0001c0003t0004g0175 a0001c0003t0004g0176 a0001c0003t0004g0177 a0001c0003t0004g0179 a0001c0003t0004g0180 a0001c0003t0004g0181 a0001c0003t0004g0182 a0001c0003t0004g0205 a0001c0003t0004g0206 a0001c0003t0004g0207 a0001c0003t0004g0208 a0001c0003t0004g0209 a0001c0003t0004g0210 a0001c0003t0004g0211 a0001c0003t0004g0212 a0001c0003t0004g0213 a0001c0003t0004g0214 a0001c0003t0004g0215 a0001c0003t0004g0216 a0001c0003t0004g0217 a0001c0003t0004g0218 a0001c0003t0004g0219 a0001c0003t0004g0220 a0001c0003t0004g0221 a0001c0003t0004g0223 a0001c0003t0004g0224 a0001c0003t0004g0225 a0001c0003t0004g0226 a0001c0003t0004g0227 a0001c0003t0004g0228 a0001c0003t0004g0229 a0001c0003t0012g0349 a0001c0003t0012g0356 a0001c0005t0009g0094 a0001c0005t0009g0095 a0001c0005t0009g0131 a0001c0005t0009g0137 a0001c0005t0009g0138 a0005c0010t0013g0018	62	396	0.1566	-10	c.108 others(27): Show c.1084-686_1084-677delGAAAAAACAA		RTN4IP1	ENSG00000130347.13	transcript	ENST00000369063.8	protein_coding	8/8						chr6	TogoVar
RTN4IP1_chr6_106565771_106634498	106589177	AGGAGGAG others(3): Show AGGAGGAGGAG	A A	intron_variant intron_variant	MODIFIER	HG03453.hp1 NA19240.hp2 HG03453.hp1 NA19240.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0011 a0001c0002t0001g0011	2	396	0.0051	-10	c.807 others(27): Show c.807-1325_807-1316delCTCCTCCTCC		RTN4IP1	ENSG00000130347.13	transcript	ENST00000369063.8	protein_coding	6/8						chr6	TogoVar
RTN4IP1_chr6_106565771_106634498	106605814	CCCAAAAA others(3): Show CCCAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00438.hp1 HG00639.hp1 others(52): Show HG00323.hp2 HG00438.hp1 HG00639.hp1 HG00733.hp2 HG00735.hp1 HG00738.hp2 HG01071.hp1 HG01109.hp2 HG01175.hp2 HG01261.hp1 HG01517.hp2 HG01934.hp2 HG01943.hp2 HG02109.hp2 HG02148.hp1 HG02165.hp1 HG02273.hp2 HG02523.hp1 HG02602.hp1 HG02647.hp2 HG02683.hp2 HG02698.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG03041.hp2 HG03471.hp1 HG03490.hp1 HG03492.hp2 HG03688.hp1 HG03704.hp2 HG03834.hp2 HG04184.hp2 HG04204.hp1 HG06807.hp1 NA18747.hp2 NA18947.hp2 NA18967.hp1 NA18967.hp2 NA18970.hp2 NA18972.hp1 NA18977.hp1 NA18982.hp2 NA18986.hp1 NA18988.hp1 NA18991.hp1 NA19003.hp1 NA19007.hp1 NA19076.hp1 NA19080.hp1 NA19081.hp2 NA19082.hp2 NA19086.hp1 NA20752.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0015	a0001c0001t0001g0245 a0001c0001t0001g0258 a0001c0001t0001g0260 others(52): Show a0001c0001t0001g0245 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0310 a0001c0001t0002g0023 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0052 a0001c0001t0002g0054 a0001c0001t0002g0055 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0063 a0001c0001t0002g0064 a0001c0001t0002g0065 a0001c0001t0002g0066 a0001c0001t0002g0067 a0001c0001t0002g0069 a0001c0001t0002g0070 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0002g0075 a0001c0001t0002g0076 a0001c0001t0002g0077 a0001c0001t0002g0078 a0001c0001t0002g0079 a0001c0001t0002g0080 a0001c0001t0002g0081 a0001c0001t0002g0082 a0001c0001t0002g0083 a0001c0001t0002g0085 a0001c0001t0002g0086 a0001c0001t0002g0087 a0001c0001t0002g0090 a0001c0001t0006g0362 a0001c0001t0006g0364 a0001c0001t0015g0068	55	396	0.1389	-10	c.621 others(27): Show c.621-2902_621-2893delTTTTTTTTGG		RTN4IP1	ENSG00000130347.13	transcript	ENST00000369063.8	protein_coding	4/8						chr6	TogoVar
RTN4IP1_chr6_106565771_106634498	106624942	AAAAAAAA others(3): Show AAAAAAAAAAG	A A	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG01243.hp1 HG01952.hp2 others(1): Show HG00733.hp1 HG01243.hp1 HG01952.hp2 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0010 a0001c0002t0010	a0001c0002t0010g0358 a0001c0002t0010g0359 a0001c0002t0010g0360 others(1): Show a0001c0002t0010g0358 a0001c0002t0010g0359 a0001c0002t0010g0360 a0001c0002t0010g0361	4	396	0.0101	-10	c.275 others(27): Show c.275-1983_275-1974delCTTTTTTTTT		RTN4IP1	ENSG00000130347.13	transcript	ENST00000369063.8	protein_coding	1/8						chr6	TogoVar
RTN4IP1_chr6_106565771_106634498	106627743	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG03139.hp2 HG03486.hp2 HG02615.hp2 HG03139.hp2 HG03486.hp2	a0001 a0001	a0001c0004 a0001c0005 a0001c0004 a0001c0005	a0001c0004t0003 a0001c0005t0009 a0001c0004t0003 a0001c0005t0009	a0001c0004t0003g0093 a0001c0005t0009g0094 a0001c0005t0009g0095 a0001c0004t0003g0093 a0001c0005t0009g0094 a0001c0005t0009g0095	3	396	0.0076	-10	c.274 others(26): Show c.274+995_274+1004delAAAAAAAAAA		RTN4IP1	ENSG00000130347.13	transcript	ENST00000369063.8	protein_coding	1/8						chr6	TogoVar

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