Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SGK3_chr8_66707781_66867022	66857799	ATGTGTGT others(3): Show ATGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01192.hp1 HG01981.hp1 others(3): Show HG00741.hp2 HG01192.hp1 HG01981.hp1 HG02055.hp1 HG02615.hp2 HG03017.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0008 a0001c0002t0002 a0001c0002t0008	a0001c0002t0002g0022 a0001c0002t0002g0029 a0001c0002t0002g0032 others(3): Show a0001c0002t0002g0022 a0001c0002t0002g0029 a0001c0002t0002g0032 a0001c0002t0002g0033 a0001c0002t0002g0139 a0001c0002t0008g0123	6	142	0.0423	-10	c.132 others(29): Show c.1321-1578_1321-1569delGTGTGTGTGT	SGK3	ENSG00000104205.16	transcript	ENST00000521198.7	protein_coding	16/16		INFO_REALIGN_3_PRIME	chr8	TogoVar
SGMS1_chr10_50300600_50628956	50400396	CATATATA others(3): Show CATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00738.hp2 HG01106.hp1 others(15): Show HG00408.hp2 HG00738.hp2 HG01106.hp1 HG01123.hp2 HG01517.hp1 HG02027.hp1 HG02723.hp2 HG03225.hp1 HG03579.hp1 HG03942.hp1 NA18940.hp1 NA18960.hp1 NA18965.hp1 NA18983.hp2 NA19000.hp2 NA19089.hp2 NA19240.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0002t0001 a0001c0002t0003	a0001c0001t0001g0007 a0001c0001t0001g0023 a0001c0001t0001g0038 others(15): Show a0001c0001t0001g0007 a0001c0001t0001g0023 a0001c0001t0001g0038 a0001c0001t0001g0151 a0001c0001t0001g0161 a0001c0001t0001g0183 a0001c0001t0001g0202 a0001c0001t0001g0279 a0001c0001t0002g0033 a0001c0001t0002g0043 a0001c0001t0003g0015 a0001c0001t0003g0236 a0001c0001t0003g0240 a0001c0001t0003g0246 a0001c0002t0001g0061 a0001c0002t0001g0080 a0001c0002t0001g0230 a0001c0002t0003g0241	18	312	0.0577	-10	c.-23 others(31): Show c.-232+33070_-232+33079delATATATATAT	SGMS1	ENSG00000198964.14	transcript	ENST00000361781.7	protein_coding	6/10			chr10	TogoVar
SGMS1_chr10_50300600_50628956	50417413	AAAAATAA others(3): Show AAAAATAAAAT	A A	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00639.hp1 HG00642.hp1 others(46): Show HG00558.hp1 HG00639.hp1 HG00642.hp1 HG00733.hp2 HG01074.hp2 HG01168.hp1 HG01169.hp2 HG01261.hp1 HG01358.hp1 HG01361.hp1 HG01496.hp2 HG01952.hp2 HG01975.hp2 HG01981.hp2 HG01993.hp2 HG02015.hp1 HG02027.hp2 HG02074.hp1 HG02080.hp2 HG02148.hp1 HG02451.hp1 HG02523.hp1 HG02559.hp1 HG02735.hp1 HG02809.hp2 HG03471.hp1 HG03516.hp1 HG03927.hp2 NA18522.hp1 NA18612.hp2 NA18939.hp2 NA18940.hp2 NA18945.hp1 NA18963.hp1 NA18966.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18978.hp1 NA18993.hp1 NA19000.hp1 NA19002.hp1 NA19056.hp1 NA19063.hp1 NA19079.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(5): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0002t0006 a0001c0002t0009 a0001c0003t0001 a0001c0004t0001	a0001c0001t0001g0006 a0001c0001t0001g0096 a0001c0001t0001g0143 others(46): Show a0001c0001t0001g0006 a0001c0001t0001g0096 a0001c0001t0001g0143 a0001c0001t0001g0263 a0001c0002t0001g0058 a0001c0002t0001g0059 a0001c0002t0001g0062 a0001c0002t0001g0065 a0001c0002t0001g0068 a0001c0002t0001g0070 a0001c0002t0001g0071 a0001c0002t0001g0073 a0001c0002t0001g0077 a0001c0002t0001g0079 a0001c0002t0001g0089 a0001c0002t0001g0090 a0001c0002t0001g0093 a0001c0002t0001g0094 a0001c0002t0001g0098 a0001c0002t0001g0099 a0001c0002t0001g0100 a0001c0002t0001g0101 a0001c0002t0001g0102 a0001c0002t0001g0103 a0001c0002t0001g0104 a0001c0002t0001g0106 a0001c0002t0001g0109 a0001c0002t0001g0145 a0001c0002t0001g0147 a0001c0002t0001g0155 a0001c0002t0001g0162 a0001c0002t0001g0198 a0001c0002t0001g0211 a0001c0002t0001g0212 a0001c0002t0001g0239 a0001c0002t0001g0245 a0001c0002t0001g0258 a0001c0002t0001g0264 a0001c0002t0001g0299 a0001c0002t0001g0310 a0001c0002t0002g0154 a0001c0002t0004g0025 a0001c0002t0006g0002 a0001c0002t0006g0003 a0001c0002t0006g0004 a0001c0002t0006g0005 a0001c0002t0009g0026 a0001c0003t0001g0064 a0001c0004t0001g0057	49	312	0.1571	-10	c.-23 others(31): Show c.-232+16053_-232+16062delATTTTATTTT	SGMS1	ENSG00000198964.14	transcript	ENST00000361781.7	protein_coding	6/10			chr10	TogoVar
SGMS1_chr10_50300600_50628956	50429732	CACACACA others(3): Show CACACACACAT	C C	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG00735.hp1 HG00741.hp2 others(47): Show HG00673.hp2 HG00735.hp1 HG00741.hp2 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01169.hp1 HG01884.hp1 HG01981.hp1 HG02015.hp2 HG02055.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02280.hp2 HG02523.hp2 HG02559.hp2 HG02615.hp2 HG02622.hp1 HG02683.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp2 HG03098.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp2 HG03486.hp1 HG03516.hp2 HG03579.hp1 HG03942.hp2 HG04115.hp2 NA18906.hp2 NA18960.hp1 NA18961.hp2 NA18965.hp2 NA18977.hp1 NA18980.hp1 NA18992.hp2 NA19000.hp2 NA19004.hp2 NA19030.hp2 NA19043.hp2 NA19066.hp1 NA19074.hp2 NA19087.hp1 NA19240.hp2 NA20129.hp2 NA20805.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0005 a0001c0001 a0001c0002 a0002c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0013 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0002c0005t0001	a0001c0001t0001g0014 a0001c0001t0001g0020 a0001c0001t0001g0022 others(47): Show a0001c0001t0001g0014 a0001c0001t0001g0020 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0086 a0001c0001t0001g0105 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0151 a0001c0001t0001g0153 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0165 a0001c0001t0001g0167 a0001c0001t0001g0169 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0186 a0001c0001t0001g0190 a0001c0001t0001g0197 a0001c0001t0002g0043 a0001c0001t0002g0082 a0001c0001t0002g0083 a0001c0001t0002g0084 a0001c0001t0004g0009 a0001c0001t0004g0011 a0001c0001t0004g0013 a0001c0001t0004g0019 a0001c0001t0004g0048 a0001c0001t0004g0049 a0001c0001t0004g0050 a0001c0001t0013g0174 a0001c0002t0001g0012 a0001c0002t0001g0017 a0001c0002t0001g0039 a0001c0002t0001g0085 a0001c0002t0001g0271 a0001c0002t0002g0016 a0001c0002t0002g0018 a0001c0002t0002g0027 a0001c0002t0002g0028 a0001c0002t0004g0010 a0001c0002t0004g0088 a0002c0005t0001g0144	50	312	0.1603	-10	c.-23 others(29): Show c.-232+3734_-232+3743delATGTGTGTGT	SGMS1	ENSG00000198964.14	transcript	ENST00000361781.7	protein_coding	6/10			chr10	TogoVar
SGMS1_chr10_50300600_50628956	50458339	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02717.hp1 NA18522.hp2 HG02717.hp1 NA18522.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0142 a0001c0002t0001g0194 a0001c0002t0001g0142 a0001c0002t0001g0194	2	312	0.0064	-10	c.-31 others(29): Show c.-313+2324_-313+2333delAAAAAAAAAA	SGMS1	ENSG00000198964.14	transcript	ENST00000361781.7	protein_coding	5/10			chr10	TogoVar
SGMS1_chr10_50300600_50628956	50527063	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0133 a0001c0001t0009g0133	1	312	0.0032	-10	c.-58 others(29): Show c.-588-7152_-588-7143delTTTTTTTTTT	SGMS1	ENSG00000198964.14	transcript	ENST00000361781.7	protein_coding	2/10			chr10	TogoVar
SGMS1_chr10_50300600_50628956	50532225	CTGTGTGT others(3): Show CTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01168.hp2 HG01257.hp1 HG02300.hp1 others(4): Show HG01168.hp2 HG01257.hp1 HG02300.hp1 HG02647.hp2 HG03130.hp1 HG06807.hp2 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005	a0001c0001t0001g0120 a0001c0001t0003g0215 a0001c0001t0003g0238 others(4): Show a0001c0001t0001g0120 a0001c0001t0003g0215 a0001c0001t0003g0238 a0001c0002t0001g0107 a0001c0002t0003g0233 a0001c0002t0004g0119 a0001c0002t0005g0232	7	312	0.0224	-10	c.-58 others(31): Show c.-588-12314_-588-12305delCACACACACA	SGMS1	ENSG00000198964.14	transcript	ENST00000361781.7	protein_coding	2/10			chr10	TogoVar
SGMS1_chr10_50300600_50628956	50587631	ATATGTGT others(3): Show ATATGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0297 a0001c0001t0002g0297	1	312	0.0032	-10	c.-58 others(29): Show c.-589+2512_-589+2521delCACACACATA	SGMS1	ENSG00000198964.14	transcript	ENST00000361781.7	protein_coding	2/10			chr10	TogoVar
SGMS1_chr10_50300600_50628956	50588721	ATTTTTTT others(3): Show ATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0043 a0001c0001t0002g0043	1	312	0.0032	-10	c.-58 others(29): Show c.-589+1422_-589+1431delAAAAAAAAAA	SGMS1	ENSG00000198964.14	transcript	ENST00000361781.7	protein_coding	2/10			chr10	TogoVar
SGMS2_chr4_107819932_107920047	107886364	ATTTTTTT others(3): Show ATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp2 NA18962.hp1 HG02280.hp2 NA18962.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0019 a0001c0001t0001 a0001c0001t0019	a0001c0001t0001g0119 a0001c0001t0019g0038 a0001c0001t0001g0119 a0001c0001t0019g0038	2	270	0.0074	-10	c.-24 others(29): Show c.-244-8925_-244-8916delTTTTTTTTTT	SGMS2	ENSG00000164023.15	transcript	ENST00000690982.1	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr4	TogoVar
SGO2_chr2_200521207_200589096	200524454	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0078 a0001c0004t0001g0078	1	384	0.0026	-10	c.-18 others(21): Show c.-1800_-1791delTTTTTTTTTT	SGO2	ENSG00000163535.18	transcript	ENST00000357799.9	protein_coding		1752		chr2	TogoVar
SGPL1_chr10_70810948_70886184	70833987	AGAGTGAC others(3): Show AGAGTGACGTG	A A	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG03098.hp1 HG03579.hp2 HG02622.hp1 HG03098.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0019 a0001c0001t0021g0049 a0001c0001t0021g0019 a0001c0001t0021g0049	3	402	0.0075	-10	c.28- others(27): Show c.28-10485_28-10476delGAGTGACGTG	SGPL1	ENSG00000166224.18	transcript	ENST00000373202.8	protein_coding	2/14			chr10	TogoVar
SGPL1_chr10_70810948_70886184	70854231	GTGGTGTG others(3): Show GTGGTGTGATC	G G	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0212 a0001c0001t0002g0212	1	402	0.0025	-10	c.262 others(25): Show c.262-475_262-466delGGTGTGATCT	SGPL1	ENSG00000166224.18	transcript	ENST00000373202.8	protein_coding	4/14		INFO_REALIGN_3_PRIME	chr10	TogoVar
SGPP1_chr14_63679216_63733065	63688315	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG01243.hp1 HG02523.hp2 others(3): Show HG00423.hp2 HG01243.hp1 HG02523.hp2 NA18972.hp2 NA18980.hp2 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0005 a0001c0001t0003 a0001c0002t0005	a0001c0001t0003g0256 a0001c0002t0005g0001 a0001c0002t0005g0028 others(2): Show a0001c0001t0003g0256 a0001c0002t0005g0001 a0001c0002t0005g0028 a0001c0002t0005g0029 a0001c0002t0005g0030	6	288	0.0208	-10	c.775 others(27): Show c.775-1669_775-1660delTTTTTTTTTT	SGPP1	ENSG00000126821.8	transcript	ENST00000247225.7	protein_coding	2/2			chr14	TogoVar
SGPP1_chr14_63679216_63733065	63688710	ATTTCTTT others(3): Show ATTTCTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG02523.hp2 NA18980.hp2 others(1): Show HG00423.hp2 HG02523.hp2 NA18980.hp2 NA19086.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0001 a0001c0002t0005g0028 a0001c0002t0005g0029 a0001c0002t0005g0001 a0001c0002t0005g0028 a0001c0002t0005g0029	4	288	0.0139	-10	c.775 others(27): Show c.775-2064_775-2055delAAAAAAGAAA	SGPP1	ENSG00000126821.8	transcript	ENST00000247225.7	protein_coding	2/2			chr14	TogoVar
SGPP1_chr14_63679216_63733065	63718977	CATATATA others(3): Show CATATATATAT	C C	intron_variant intron_variant	MODIFIER	NA19062.hp2 NA19062.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0111 a0001c0001t0001g0111	1	288	0.0035	-10	c.684 others(27): Show c.684+8274_684+8283delATATATATAT	SGPP1	ENSG00000126821.8	transcript	ENST00000247225.7	protein_coding	1/2			chr14	TogoVar
SGPP1_chr14_63679216_63733065	63719006	ATATATAT others(3): Show ATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0050 a0001c0002t0002g0050	1	288	0.0035	-10	c.684 others(27): Show c.684+8245_684+8254delAATATATATA	SGPP1	ENSG00000126821.8	transcript	ENST00000247225.7	protein_coding	1/2			chr14	TogoVar
SGPP1_chr14_63679216_63733065	63719008	ATATATAT others(3): Show ATATATATTTT	A A	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0009 a0001c0002t0009	a0001c0002t0009g0011 a0001c0002t0009g0011	1	288	0.0035	-10	c.684 others(27): Show c.684+8243_684+8252delAAAATATATA	SGPP1	ENSG00000126821.8	transcript	ENST00000247225.7	protein_coding	1/2			chr14	TogoVar
SGPP1_chr14_63679216_63733065	63728103	GCGCCCCG others(3): Show GCGCCCCGCCC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0002 a0003c0006t0002	a0003c0006t0002g0041 a0003c0006t0002g0041	1	288	0.0035	-10	c.-16 others(19): Show c.-169_-160delGGGCGGGGCG	SGPP1	ENSG00000126821.8	transcript	ENST00000247225.7	protein_coding		39		chr14	TogoVar
SGPP2_chr2_222419543_222567621	222434975	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	NA18975.hp1 NA19010.hp1 NA18975.hp1 NA19010.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0007 a0001c0001t0005 a0001c0001t0007	a0001c0001t0005g0109 a0001c0001t0007g0170 a0001c0001t0005g0109 a0001c0001t0007g0170	2	272	0.0074	-10	c.219 others(29): Show c.219+10182_219+10191delCACACACACA	SGPP2	ENSG00000163082.10	transcript	ENST00000321276.8	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr2	TogoVar
SGPP2_chr2_222419543_222567621	222467950	GAAAAAAA others(3): Show GAAAAAAAAAA	G G	intron_variant intron_variant	MODIFIER	HG04204.hp1 HG06807.hp2 NA18968.hp2 HG04204.hp1 HG06807.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0024 a0001c0001t0082 a0001c0001t0001 a0001c0001t0024 a0001c0001t0082	a0001c0001t0001g0143 a0001c0001t0024g0124 a0001c0001t0082g0264 a0001c0001t0001g0143 a0001c0001t0024g0124 a0001c0001t0082g0264	3	272	0.0110	-10	c.220 others(27): Show c.220-6589_220-6580delAAAAAAAAAA	SGPP2	ENSG00000163082.10	transcript	ENST00000321276.8	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr2	TogoVar
SGPP2_chr2_222419543_222567621	222472909	GAGGCTGA others(3): Show GAGGCTGAGGC	G G	intron_variant intron_variant	MODIFIER	NA19009.hp1 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0123 a0001c0001t0001g0123	1	272	0.0037	-10	c.220 others(27): Show c.220-1655_220-1646delCTGAGGCAGG	SGPP2	ENSG00000163082.10	transcript	ENST00000321276.8	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr2	TogoVar
SGSM1_chr22_24801211_24932578	24851449	GGAGAGAG others(3): Show GGAGAGAGAGA	G G	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp1 HG02647.hp1 others(1): Show HG01167.hp2 HG01169.hp1 HG02647.hp1 HG02723.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0001 a0001c0007t0045 a0001c0007t0001 a0001c0007t0045	a0001c0007t0001g0323 a0001c0007t0001g0324 a0001c0007t0001g0338 others(1): Show a0001c0007t0001g0323 a0001c0007t0001g0324 a0001c0007t0001g0338 a0001c0007t0045g0178	4	338	0.0118	-10	c.455 others(27): Show c.455+1044_455+1053delGAGAGAGAGA	SGSM1	ENSG00000167037.19	transcript	ENST00000400358.9	protein_coding	5/24		INFO_REALIGN_3_PRIME	chr22	TogoVar
SGSM1_chr22_24801211_24932578	24858635	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01109.hp1 HG01109.hp2 others(54): Show HG00735.hp1 HG01109.hp1 HG01109.hp2 HG01168.hp1 HG01169.hp2 HG01243.hp2 HG01258.hp2 HG01891.hp1 HG01952.hp1 HG02004.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp2 HG02109.hp1 HG02165.hp1 HG02451.hp2 HG02486.hp2 HG02615.hp1 HG02622.hp1 HG02630.hp2 HG02698.hp2 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp2 HG02896.hp2 HG02922.hp2 HG02965.hp2 HG03041.hp2 HG03098.hp1 HG03130.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG03669.hp1 HG03688.hp1 HG04228.hp2 NA18522.hp2 NA18950.hp1 NA18951.hp2 NA18954.hp2 NA18989.hp1 NA18991.hp1 NA19005.hp2 NA19009.hp2 NA19030.hp1 NA19081.hp2 NA19240.hp1 NA20300.hp1 NA20300.hp2	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0005 a0014	a0001c0001 a0001c0004 a0001c0005 others(21): Show a0001c0001 a0001c0004 a0001c0005 a0001c0006 a0001c0014 a0001c0018 a0001c0020 a0001c0023 a0001c0033 a0002c0002 a0002c0012 a0002c0015 a0003c0003 a0003c0008 a0003c0010 a0003c0019 a0003c0021 a0003c0022 a0004c0016 a0004c0041 a0004c0042 a0005c0039 a0005c0040 a0014c0038	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(39): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0010 a0001c0001t0024 a0001c0004t0001 a0001c0004t0002 a0001c0004t0004 a0001c0004t0005 a0001c0004t0006 a0001c0005t0001 a0001c0005t0009 a0001c0005t0013 a0001c0005t0015 a0001c0006t0001 a0001c0006t0007 a0001c0014t0002 a0001c0014t0037 a0001c0018t0001 a0001c0020t0010 a0001c0023t0012 a0001c0033t0003 a0002c0002t0027 a0002c0012t0003 a0002c0015t0002 a0003c0003t0003 a0003c0003t0017 a0003c0003t0020 a0003c0008t0001 a0003c0010t0001 a0003c0010t0003 a0003c0019t0004 a0003c0021t0044 a0003c0022t0002 a0004c0016t0001 a0004c0016t0041 a0004c0041t0016 a0004c0042t0010 a0005c0039t0042 a0005c0040t0012 a0014c0038t0003	a0001c0001t0001g0016 a0001c0001t0001g0252 a0001c0001t0001g0254 others(54): Show a0001c0001t0001g0016 a0001c0001t0001g0252 a0001c0001t0001g0254 a0001c0001t0003g0311 a0001c0001t0004g0167 a0001c0001t0004g0168 a0001c0001t0005g0165 a0001c0001t0010g0303 a0001c0001t0024g0319 a0001c0004t0001g0330 a0001c0004t0002g0111 a0001c0004t0002g0118 a0001c0004t0002g0248 a0001c0004t0002g0331 a0001c0004t0002g0333 a0001c0004t0004g0182 a0001c0004t0005g0181 a0001c0004t0006g0149 a0001c0004t0006g0335 a0001c0005t0001g0011 a0001c0005t0001g0047 a0001c0005t0001g0122 a0001c0005t0001g0159 a0001c0005t0009g0009 a0001c0005t0009g0326 a0001c0005t0013g0014 a0001c0005t0015g0120 a0001c0006t0001g0199 a0001c0006t0007g0201 a0001c0014t0002g0148 a0001c0014t0037g0332 a0001c0018t0001g0310 a0001c0020t0010g0336 a0001c0023t0012g0285 a0001c0033t0003g0001 a0002c0002t0027g0313 a0002c0012t0003g0221 a0002c0015t0002g0202 a0002c0015t0002g0268 a0003c0003t0003g0119 a0003c0003t0017g0044 a0003c0003t0017g0320 a0003c0003t0020g0071 a0003c0008t0001g0126 a0003c0010t0001g0067 a0003c0010t0001g0295 a0003c0010t0003g0017 a0003c0019t0004g0187 a0003c0021t0044g0172 a0003c0022t0002g0030 a0004c0016t0001g0307 a0004c0016t0041g0124 a0004c0041t0016g0013 a0004c0042t0010g0305 a0005c0039t0042g0029 a0005c0040t0012g0304 a0014c0038t0003g0292	57	338	0.1686	-10	c.802 others(27): Show c.802-1069_802-1060delAAAAAAAAAA	SGSM1	ENSG00000167037.19	transcript	ENST00000400358.9	protein_coding	8/24		INFO_REALIGN_3_PRIME	chr22	TogoVar
SGSM1_chr22_24801211_24932578	24860897	TAAAAAAA others(3): Show TAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0003 a0003	a0003c0008 a0003c0008	a0003c0008t0003 a0003c0008t0003	a0003c0008t0003g0325 a0003c0008t0003g0325	1	338	0.0030	-10	c.926 others(27): Show c.926+1074_926+1083delAAAAAAAAAA	SGSM1	ENSG00000167037.19	transcript	ENST00000400358.9	protein_coding	9/24		INFO_REALIGN_3_PRIME	chr22	TogoVar
SGSM1_chr22_24801211_24932578	24860914	AAAAAAAA others(3): Show AAAAAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02280.hp2 HG03225.hp1 others(1): Show HG02257.hp1 HG02280.hp2 HG03225.hp1 NA18906.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0001 a0003c0003t0009 a0001c0001t0001 a0003c0003t0001 a0003c0003t0009	a0001c0001t0001g0300 a0003c0003t0001g0301 a0003c0003t0009g0123 others(1): Show a0001c0001t0001g0300 a0003c0003t0001g0301 a0003c0003t0009g0123 a0003c0003t0009g0299	4	338	0.0118	-10	c.926 others(27): Show c.926+1076_926+1085delAAAAAAAATA	SGSM1	ENSG00000167037.19	transcript	ENST00000400358.9	protein_coding	9/24		INFO_REALIGN_3_PRIME	chr22	TogoVar
SGSM1_chr22_24801211_24932578	24860918	AAAAAATA others(3): Show AAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0003 a0003	a0003c0019 a0003c0019	a0003c0019t0004 a0003c0019t0004	a0003c0019t0004g0187 a0003c0019t0004g0187	1	338	0.0030	-10	c.926 others(27): Show c.926+1080_926+1089delAAAATATATA	SGSM1	ENSG00000167037.19	transcript	ENST00000400358.9	protein_coding	9/24		INFO_REALIGN_3_PRIME	chr22	TogoVar
SGSM1_chr22_24801211_24932578	24884697	CCAGGGCC others(3): Show CCAGGGCCCTT	C C	intron_variant intron_variant	MODIFIER	NA18956.hp2 NA18956.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0158 a0001c0001t0018g0158	1	338	0.0030	-10	c.164 others(27): Show c.1641+506_1641+515delCCTTCAGGGC	SGSM1	ENSG00000167037.19	transcript	ENST00000400358.9	protein_coding	15/24		INFO_REALIGN_3_PRIME	chr22	TogoVar
SGSM2_chr17_2332501_2386054	2352767	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00408.hp2 HG00558.hp1 others(55): Show HG00099.hp1 HG00408.hp2 HG00558.hp1 HG01891.hp2 HG02056.hp1 HG02083.hp1 HG02132.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02559.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02647.hp2 HG02717.hp1 HG02809.hp1 HG02886.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp2 HG02965.hp2 HG02976.hp2 HG03139.hp2 HG03195.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp1 HG03942.hp1 HG04204.hp1 NA18522.hp1 NA18906.hp2 NA18942.hp2 NA18944.hp1 NA18952.hp2 NA18954.hp1 NA18961.hp1 NA18981.hp1 NA18981.hp2 NA18990.hp2 NA18992.hp1 NA19003.hp2 NA19004.hp2 NA19010.hp1 NA19011.hp1 NA19030.hp2 NA19043.hp1 NA19060.hp1 NA19065.hp2 NA19067.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0005 others(4): Show a0001 a0002 a0005 a0007 a0016 a0017 a0027	a0001c0001 a0001c0003 a0001c0005 others(6): Show a0001c0001 a0001c0003 a0001c0005 a0002c0012 a0005c0009 a0007c0007 a0016c0022 a0017c0035 a0027c0015	a0001c0001t0001 a0001c0001t0002 a0001c0001t0022 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0022 a0001c0003t0001 a0001c0003t0002 a0001c0003t0016 a0001c0003t0019 a0001c0005t0002 a0002c0012t0001 a0005c0009t0002 a0007c0007t0001 a0016c0022t0001 a0017c0035t0001 a0027c0015t0005	a0001c0001t0001g0023 a0001c0001t0001g0061 a0001c0001t0001g0070 others(53): Show a0001c0001t0001g0023 a0001c0001t0001g0061 a0001c0001t0001g0070 a0001c0001t0001g0081 a0001c0001t0001g0085 a0001c0001t0001g0110 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0197 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0332 a0001c0001t0001g0349 a0001c0001t0001g0351 a0001c0001t0002g0382 a0001c0001t0022g0130 a0001c0003t0001g0054 a0001c0003t0001g0194 a0001c0003t0001g0225 a0001c0003t0001g0258 a0001c0003t0001g0294 a0001c0003t0001g0338 a0001c0003t0001g0340 a0001c0003t0001g0353 a0001c0003t0001g0354 a0001c0003t0001g0356 a0001c0003t0001g0360 a0001c0003t0001g0361 a0001c0003t0001g0362 a0001c0003t0001g0373 a0001c0003t0001g0374 a0001c0003t0001g0375 a0001c0003t0001g0379 a0001c0003t0001g0381 a0001c0003t0001g0386 a0001c0003t0001g0387 a0001c0003t0001g0393 a0001c0003t0002g0012 a0001c0003t0002g0099 a0001c0003t0002g0274 a0001c0003t0002g0380 a0001c0003t0016g0266 a0001c0003t0019g0352 a0001c0005t0002g0013 a0001c0005t0002g0084 a0001c0005t0002g0272 a0001c0005t0002g0275 a0002c0012t0001g0129 a0002c0012t0001g0372 a0005c0009t0002g0383 a0005c0009t0002g0384 a0007c0007t0001g0135 a0007c0007t0001g0140 a0016c0022t0001g0268 a0017c0035t0001g0301 a0027c0015t0005g0079	58	422	0.1374	-10	c.134 others(27): Show c.134-8851_134-8842delTTTTTTTTTT	SGSM2	ENSG00000141258.13	transcript	ENST00000268989.8	protein_coding	2/23		INFO_REALIGN_3_PRIME	chr17	TogoVar
SGSM2_chr17_2332501_2386054	2372318	TGCTGCCC others(3): Show TGCTGCCCACC	T T	splice_region_variant others(1): Show splice_region_variant intron_variant	LOW	HG03209.hp1 NA19070.hp2 HG03209.hp1 NA19070.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0041 a0001c0001 a0002c0041	a0001c0001t0001 a0002c0041t0001 a0001c0001t0001 a0002c0041t0001	a0001c0001t0001g0211 a0002c0041t0001g0312 a0001c0001t0001g0211 a0002c0041t0001g0312	2	422	0.0047	-10	c.164 others(24): Show c.1643-12_1643-3delTGCCCACCGC	SGSM2	ENSG00000141258.13	transcript	ENST00000268989.8	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr17	TogoVar
SGTB_chr5_65660928_65727109	65704035	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00735.hp2 HG02976.hp2 others(3): Show HG00733.hp1 HG00735.hp2 HG02976.hp2 HG03490.hp1 HG03492.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0039 a0001c0001t0003g0040 a0001c0001t0003g0041 others(3): Show a0001c0001t0003g0039 a0001c0001t0003g0040 a0001c0001t0003g0041 a0001c0001t0003g0042 a0001c0001t0003g0043 a0001c0001t0003g0064	6	360	0.0167	-10	c.374 others(25): Show c.374+234_374+243delTTTTTTTTTT	SGTB	ENSG00000197860.10	transcript	ENST00000381007.9	protein_coding	5/10			chr5	TogoVar
SGTB_chr5_65660928_65727109	65704047	AAAAAATA others(3): Show AAAAAATAAAT	A A	intron_variant intron_variant	MODIFIER	NA18992.hp1 NA19070.hp2 NA19076.hp1 others(1): Show NA18992.hp1 NA19070.hp2 NA19076.hp1 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0119 a0001c0001t0002g0120 a0001c0001t0002g0121 others(1): Show a0001c0001t0001g0119 a0001c0001t0002g0120 a0001c0001t0002g0121 a0001c0001t0002g0131	4	360	0.0111	-10	c.374 others(25): Show c.374+222_374+231delATTTATTTTT	SGTB	ENSG00000197860.10	transcript	ENST00000381007.9	protein_coding	5/10			chr5	TogoVar
SH2B2_chr7_102281868_102326711	102305252	TTTTTATT others(3): Show TTTTTATTTTA	T T	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG03453.hp1 HG03486.hp2 others(2): Show HG02965.hp2 HG03453.hp1 HG03486.hp2 HG03579.hp2 NA19240.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0004c0004t0001 a0001c0001t0001 a0004c0004t0001	a0001c0001t0001g0249 a0001c0001t0001g0255 a0001c0001t0001g0256 others(2): Show a0001c0001t0001g0249 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0257 a0004c0004t0001g0258	5	406	0.0123	-10	c.730 others(27): Show c.730-1452_730-1443delTTTATTTTAT	SH2B2	ENSG00000160999.11	transcript	ENST00000444095.3	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
SH2B3_chr12_111400923_111456623	111427388	GAAAAAAA others(3): Show GAAAAAAAAAA	G G	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01243.hp1 HG01884.hp2 others(32): Show HG01168.hp1 HG01243.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG02055.hp1 HG02055.hp2 HG02257.hp1 HG02486.hp2 HG02559.hp2 HG02630.hp1 HG02717.hp1 HG02886.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03130.hp1 HG03209.hp2 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp2 HG03516.hp2 HG03540.hp1 HG03579.hp1 NA18906.hp1 NA19043.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0005 a0002c0002t0013 others(1): Show a0002c0002t0004 a0002c0002t0005 a0002c0002t0013 a0002c0002t0014	a0002c0002t0004g0022 a0002c0002t0004g0098 a0002c0002t0004g0099 others(28): Show a0002c0002t0004g0022 a0002c0002t0004g0098 a0002c0002t0004g0099 a0002c0002t0004g0100 a0002c0002t0004g0101 a0002c0002t0004g0102 a0002c0002t0004g0103 a0002c0002t0004g0111 a0002c0002t0004g0112 a0002c0002t0004g0113 a0002c0002t0004g0115 a0002c0002t0004g0116 a0002c0002t0004g0117 a0002c0002t0004g0119 a0002c0002t0004g0254 a0002c0002t0005g0005 a0002c0002t0005g0015 a0002c0002t0005g0090 a0002c0002t0005g0091 a0002c0002t0005g0092 a0002c0002t0005g0093 a0002c0002t0005g0104 a0002c0002t0005g0105 a0002c0002t0005g0106 a0002c0002t0005g0107 a0002c0002t0005g0108 a0002c0002t0005g0109 a0002c0002t0005g0110 a0002c0002t0005g0120 a0002c0002t0013g0122 a0002c0002t0014g0094	35	326	0.1074	-10	c.732 others(27): Show c.732+8532_732+8541delAAAAAAAAAA	SH2B3	ENSG00000111252.11	transcript	ENST00000341259.7	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr12	TogoVar
SH2B3_chr12_111400923_111456623	111442510	AGACCACC others(3): Show AGACCACCAGG	A A	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0132 a0001c0001t0002g0132	1	326	0.0031	-10	c.733 others(27): Show c.733-4240_733-4231delCCACCAGGGA	SH2B3	ENSG00000111252.11	transcript	ENST00000341259.7	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr12	TogoVar
SH2D1A_chrX_124341563_124378160	124350354	ATATATAA others(3): Show ATATATAATAT	A A	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02818.hp2 HG03041.hp2 others(1): Show HG02809.hp2 HG02818.hp2 HG03041.hp2 NA18978.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0045 a0001c0001t0001g0130 a0001c0001t0001g0131 others(1): Show a0001c0001t0001g0045 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0002g0129	4	318	0.0126	-10	c.137 others(27): Show c.137+3586_137+3595delTATATAATAT	SH2D1A	ENSG00000183918.18	transcript	ENST00000371139.9	protein_coding	1/3		INFO_REALIGN_3_PRIME	chrX	TogoVar
SH2D1A_chrX_124341563_124378160	124350728	ATATAATA others(3): Show ATATAATATAT	A A	intron_variant intron_variant	MODIFIER	NA18978.hp2 NA18978.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0129 a0001c0001t0002g0129	1	318	0.0031	-10	c.137 others(27): Show c.137+3954_137+3963delATATATTATA	SH2D1A	ENSG00000183918.18	transcript	ENST00000371139.9	protein_coding	1/3		INFO_REALIGN_3_PRIME	chrX	TogoVar
SH2D1A_chrX_124341563_124378160	124350812	ATATAATA others(3): Show ATATAATATAT	A A	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG03225.hp1 HG02602.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0144 a0001c0001t0001g0145	2	318	0.0063	-10	c.137 others(27): Show c.137+4038_137+4047delATATATTATA	SH2D1A	ENSG00000183918.18	transcript	ENST00000371139.9	protein_coding	1/3		INFO_REALIGN_3_PRIME	chrX	TogoVar
SH2D1A_chrX_124341563_124378160	124350840	ATATAATA others(3): Show ATATAATATAT	A A	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01123.hp1 HG01243.hp1 others(19): Show HG01081.hp2 HG01123.hp1 HG01243.hp1 HG02040.hp1 HG02083.hp1 HG02109.hp2 HG02257.hp1 HG02273.hp2 HG02809.hp2 HG02818.hp2 HG02970.hp2 HG03041.hp2 HG03540.hp1 HG03669.hp1 HG03704.hp1 NA18906.hp2 NA18981.hp2 NA19007.hp1 NA19030.hp2 NA19070.hp1 NA19084.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006	a0001c0001t0001g0045 a0001c0001t0001g0069 a0001c0001t0001g0070 others(19): Show a0001c0001t0001g0045 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0277 a0001c0001t0001g0279 a0001c0001t0002g0068 a0001c0001t0002g0118 a0001c0001t0003g0136 a0001c0001t0003g0137 a0001c0001t0003g0138 a0001c0001t0003g0241 a0001c0001t0005g0114 a0001c0001t0006g0282	22	318	0.0692	-10	c.137 others(27): Show c.137+4066_137+4075delATATATTATA	SH2D1A	ENSG00000183918.18	transcript	ENST00000371139.9	protein_coding	1/3		INFO_REALIGN_3_PRIME	chrX	TogoVar
SH2D1A_chrX_124341563_124378160	124350868	ATATAATA others(3): Show ATATAATATAT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01433.hp1 HG00735.hp1 HG01433.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0089 a0001c0001t0001g0090	2	318	0.0063	-10	c.137 others(27): Show c.137+4094_137+4103delATATATTATA	SH2D1A	ENSG00000183918.18	transcript	ENST00000371139.9	protein_coding	1/3		INFO_REALIGN_3_PRIME	chrX	TogoVar
SH2D1A_chrX_124341563_124378160	124362929	AAGGCTGT others(3): Show AAGGCTGTCTG	A A	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG02074.hp1 NA18964.hp2 HG00544.hp2 HG02074.hp1 NA18964.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0047 a0001c0001t0001g0058 a0001c0001t0002g0057 a0001c0001t0001g0047 a0001c0001t0001g0058 a0001c0001t0002g0057	3	318	0.0094	-10	c.138 others(27): Show c.138-2829_138-2820delGCTGTCTGAG	SH2D1A	ENSG00000183918.18	transcript	ENST00000371139.9	protein_coding	1/3		INFO_REALIGN_3_PRIME	chrX	TogoVar
SH2D1A_chrX_124341563_124378160	124366876	AACACACA others(3): Show AACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG03225.hp1 HG02717.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0144 a0001c0001t0003g0120 a0001c0001t0001g0144 a0001c0001t0003g0120	2	318	0.0063	-10	c.201 others(27): Show c.201+1087_201+1096delACACACACAC	SH2D1A	ENSG00000183918.18	transcript	ENST00000371139.9	protein_coding	2/3		INFO_REALIGN_3_PRIME	chrX	TogoVar
SH2D1A_chrX_124341563_124378160	124375142	ACTCTCTC others(3): Show ACTCTCTCTCT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02723.hp2 HG03453.hp2 NA18906.hp1 HG02723.hp2 HG03453.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0085 a0001c0001t0001g0017 a0001c0001t0001g0085	3	318	0.0094	-10	c.37 others(21): Show c.3752_*3761delCTCTCTCTCT	SH2D1A	ENSG00000183918.18	transcript	ENST00000371139.9	protein_coding		1983		chrX	TogoVar
SH2D1A_chrX_124341563_124378160	124375169	CTCTCTCT others(3): Show CTCTCTCTCTA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0155 a0001c0001t0001g0155	1	318	0.0031	-10	c.37 others(21): Show c.3779_*3788delTCTCTCTCTA	SH2D1A	ENSG00000183918.18	transcript	ENST00000371139.9	protein_coding		2010		chrX	TogoVar
SH2D1A_chrX_124341563_124378160	124375171	CTCTCTCT others(3): Show CTCTCTCTATA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0242 a0001c0001t0001g0242	1	318	0.0031	-10	c.37 others(21): Show c.3781_*3790delTCTCTCTATA	SH2D1A	ENSG00000183918.18	transcript	ENST00000371139.9	protein_coding		2012		chrX	TogoVar
SH2D1B_chr1_162390268_162417136	162403503	AAAAAAAA others(3): Show AAAAAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0004 a0003c0004t0004	a0003c0004t0004g0103 a0003c0004t0004g0103	1	424	0.0024	-10	c.135 others(25): Show c.135-711_135-702delATTTTTTTTT	SH2D1B	ENSG00000198574.6	transcript	ENST00000367929.3	protein_coding	1/3			chr1	TogoVar
SH2D1B_chr1_162390268_162417136	162403505	AAAAAAAA others(3): Show AAAAAAAATAT	A A	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0004 a0003c0004t0004	a0003c0004t0004g0104 a0003c0004t0004g0104	1	424	0.0024	-10	c.135 others(25): Show c.135-713_135-704delATATTTTTTT	SH2D1B	ENSG00000198574.6	transcript	ENST00000367929.3	protein_coding	1/3			chr1	TogoVar
SH2D1B_chr1_162390268_162417136	162403507	AAAAAATA others(3): Show AAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	NA18956.hp1 NA18969.hp2 NA18971.hp2 others(1): Show NA18956.hp1 NA18969.hp2 NA18971.hp2 NA18993.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0044 a0001c0001t0001g0186 a0001c0001t0001g0193 a0001c0001t0001g0044 a0001c0001t0001g0186 a0001c0001t0001g0193	4	424	0.0094	-10	c.135 others(25): Show c.135-715_135-706delATATATTTTT	SH2D1B	ENSG00000198574.6	transcript	ENST00000367929.3	protein_coding	1/3			chr1	TogoVar
SH2D1B_chr1_162390268_162417136	162403509	AAAATATA others(3): Show AAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG02040.hp2 HG02129.hp2 others(26): Show HG00408.hp1 HG02040.hp2 HG02129.hp2 HG02615.hp1 HG02735.hp1 HG02965.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp2 HG03516.hp1 HG03834.hp1 NA18941.hp2 NA18952.hp2 NA18970.hp2 NA18980.hp1 NA18987.hp2 NA18991.hp2 NA18992.hp2 NA18995.hp2 NA18998.hp1 NA19003.hp2 NA19004.hp1 NA19007.hp2 NA19055.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp2 NA19085.hp1 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0001 a0001c0001t0002 a0001c0001t0004	a0001c0001t0001g0002 a0001c0001t0001g0197 a0001c0001t0001g0216 others(15): Show a0001c0001t0001g0002 a0001c0001t0001g0197 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0001g0223 a0001c0001t0001g0245 a0001c0001t0001g0259 a0001c0001t0001g0264 a0001c0001t0002g0215 a0001c0001t0004g0024 a0001c0001t0004g0196 a0001c0001t0004g0213 a0001c0001t0004g0214	29	424	0.0684	-10	c.135 others(25): Show c.135-717_135-708delATATATATTT	SH2D1B	ENSG00000198574.6	transcript	ENST00000367929.3	protein_coding	1/3			chr1	TogoVar
SH2D1B_chr1_162390268_162417136	162403511	AATATATA others(3): Show AATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00738.hp1 HG01109.hp2 others(20): Show HG00621.hp1 HG00738.hp1 HG01109.hp2 HG01168.hp1 HG01358.hp2 HG01433.hp1 HG01943.hp2 HG02040.hp1 HG02129.hp1 HG02135.hp1 HG03688.hp1 NA18943.hp2 NA18949.hp2 NA18957.hp1 NA18959.hp1 NA18963.hp2 NA18965.hp1 NA18988.hp1 NA19055.hp1 NA19078.hp2 NA19082.hp1 NA19085.hp2 NA19090.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0018 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0018 a0002c0003t0001	a0001c0001t0001g0047 a0001c0001t0001g0156 a0001c0001t0001g0162 others(11): Show a0001c0001t0001g0047 a0001c0001t0001g0156 a0001c0001t0001g0162 a0001c0001t0001g0206 a0001c0001t0001g0208 a0001c0001t0001g0229 a0001c0001t0001g0260 a0001c0001t0002g0155 a0001c0001t0002g0161 a0001c0001t0018g0207 a0002c0003t0001g0004 a0002c0003t0001g0019 a0002c0003t0001g0152 a0002c0003t0001g0163	23	424	0.0543	-10	c.135 others(25): Show c.135-719_135-710delATATATATAT	SH2D1B	ENSG00000198574.6	transcript	ENST00000367929.3	protein_coding	1/3			chr1	TogoVar

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