Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SNX16_chr8_81794583_81847185	81842379	GGAGGGAG others(3): Show GGAGGGAGAGA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0053 a0001c0001t0001g0053	1	306	0.0033	-10	c.-36 others(19): Show c.-364_-355delTCTCTCCCTC	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		195		chr8	TogoVar
SNX16_chr8_81794583_81847185	81842383	GGAGAGAG others(3): Show GGAGAGAGAGA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	306	0.0033	-10	c.-36 others(19): Show c.-368_-359delTCTCTCTCTC	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		199		chr8	TogoVar
SNX16_chr8_81794583_81847185	81842420	GAGACAGA others(3): Show GAGACAGAGAC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04204.hp2 NA19065.hp2 HG04204.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0003 a0001c0001t0002 a0001c0002t0003	a0001c0001t0002g0002 a0001c0002t0003g0013 a0001c0001t0002g0002 a0001c0002t0003g0013	2	306	0.0065	-10	c.-40 others(19): Show c.-405_-396delGTCTCTGTCT	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		236		chr8	TogoVar
SNX16_chr8_81794583_81847185	81842451	AGGGCAAG others(3): Show AGGGCAAGAGC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02897.hp1 HG03041.hp1 NA18522.hp2 others(1): Show HG02897.hp1 HG03041.hp1 NA18522.hp2 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0005 a0001c0002t0003 a0001c0001t0001 a0001c0001t0005 a0001c0002t0003	a0001c0001t0001g0001 a0001c0001t0001g0055 a0001c0001t0005g0163 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0055 a0001c0001t0005g0163 a0001c0002t0003g0069	4	306	0.0131	-10	c.-43 others(19): Show c.-436_-427delGCTCTTGCCC	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		267		chr8	TogoVar
SNX16_chr8_81794583_81847185	81842458	GAGCGAGA others(3): Show GAGCGAGAGAC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0019 a0001c0001t0001g0019	1	306	0.0033	-10	c.-44 others(19): Show c.-443_-434delGTCTCTCGCT	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		274		chr8	TogoVar
SNX16_chr8_81794583_81847185	81842468	CAGAGAGA others(3): Show CAGAGAGAGAG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01071.hp1 HG01081.hp2 HG01515.hp2 others(5): Show HG01071.hp1 HG01081.hp2 HG01515.hp2 HG01952.hp2 HG02280.hp2 HG02735.hp2 HG02922.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0001 a0001c0001t0008	a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0016 others(4): Show a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0016 a0001c0001t0001g0039 a0001c0001t0001g0044 a0001c0001t0001g0047 a0001c0001t0008g0020	8	306	0.0261	-10	c.-45 others(19): Show c.-453_-444delCTCTCTCTCT	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		284		chr8	TogoVar
SNX16_chr8_81794583_81847185	81842522	GAGAAAGA others(3): Show GAGAAAGAGAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	306	0.0033	-10	c.-50 others(19): Show c.-507_-498delTTCTCTTTCT	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		338		chr8	TogoVar
SNX16_chr8_81794583_81847185	81845685	AGCATGTT others(3): Show AGCATGTTATG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0059 a0001c0001t0001g0059	1	306	0.0033	-10	c.-36 others(21): Show c.-3670_-3661delCATAACATGC	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		3501		chr8	TogoVar
SNX17_chr2_27365616_27382535	27366094	CTGTGTGT others(3): Show CTGTGTGTGTG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02559.hp1 HG02622.hp2 HG03453.hp2 HG02559.hp1 HG02622.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0005 a0001c0001t0003 a0001c0001t0005	a0001c0001t0003g0007 a0001c0001t0005g0004 a0001c0001t0003g0007 a0001c0001t0005g0004	3	372	0.0081	-10	c.-46 others(21): Show c.-4649_-4640delTGTGTGTGTG	SNX17	ENSG00000115234.11	transcript	ENST00000233575.7	protein_coding		4521		chr2	TogoVar
SNX17_chr2_27365616_27382535	27366215	GGTGTGTG others(3): Show GGTGTGTGTGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00280.hp1 HG00323.hp2 others(35): Show HG00099.hp2 HG00280.hp1 HG00323.hp2 HG00423.hp1 HG00735.hp1 HG00735.hp2 HG01074.hp2 HG01192.hp1 HG01346.hp1 HG01884.hp1 HG01934.hp1 HG01952.hp2 HG01981.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02572.hp2 HG02630.hp1 HG02717.hp2 HG02723.hp2 HG02735.hp2 HG02818.hp1 HG03017.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG03239.hp2 HG03486.hp2 HG04204.hp2 HG04228.hp2 NA18981.hp1 NA19043.hp2 NA19072.hp2 NA19088.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0005 a0001c0001t0002g0003 a0001c0001t0002g0004 others(5): Show a0001c0001t0001g0005 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0006 a0001c0001t0002g0033 a0001c0001t0003g0007 a0001c0001t0003g0011 a0001c0001t0003g0014	38	372	0.1022	-10	c.-45 others(21): Show c.-4528_-4519delGTGTGTGTGT	SNX17	ENSG00000115234.11	transcript	ENST00000233575.7	protein_coding		4400		chr2	TogoVar
SNX19_chr11_130861250_130921479	130903716	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0028 a0001c0001t0028	a0001c0001t0028g0190 a0001c0001t0028g0190	1	414	0.0024	-10	c.244 others(27): Show c.2444-342_2444-333delGTGTGTGTGT	SNX19	ENSG00000120451.11	transcript	ENST00000265909.9	protein_coding	7/10			chr11	TogoVar
SNX19_chr11_130861250_130921479	130909244	ACCCAGTT others(3): Show ACCCAGTTGAT	A A	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02976.hp2 HG03041.hp1 others(1): Show HG02922.hp1 HG02976.hp2 HG03041.hp1 HG03516.hp2	a0005 a0005	a0005c0004 a0005c0004	a0005c0004t0040 a0005c0004t0074 a0005c0004t0084 a0005c0004t0040 a0005c0004t0074 a0005c0004t0084	a0005c0004t0040g0179 a0005c0004t0040g0181 a0005c0004t0074g0147 others(1): Show a0005c0004t0040g0179 a0005c0004t0040g0181 a0005c0004t0074g0147 a0005c0004t0084g0182	4	414	0.0097	-10	c.203 others(27): Show c.2034+764_2034+773delATCAACTGGG	SNX19	ENSG00000120451.11	transcript	ENST00000265909.9	protein_coding	4/10			chr11	TogoVar
SNX1_chr15_64090982_64149231	64109490	TTTTTGTT others(3): Show TTTTTGTTTTG	T T	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG03834.hp2 HG01261.hp2 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0006 a0001c0003t0040 a0001c0001t0006 a0001c0003t0040	a0001c0001t0006g0162 a0001c0003t0040g0187 a0001c0001t0006g0162 a0001c0003t0040g0187	2	270	0.0074	-10	c.160 others(27): Show c.160-3058_160-3049delGTTTTGTTTT	SNX1	ENSG00000028528.15	transcript	ENST00000559844.6	protein_coding	1/14		INFO_REALIGN_3_PRIME	chr15	TogoVar
SNX1_chr15_64090982_64149231	64124147	CATATATA others(3): Show CATATATATAT	C C	intron_variant intron_variant	MODIFIER	NA18950.hp2 NA18953.hp2 NA19088.hp2 NA18950.hp2 NA18953.hp2 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0030 a0001c0001t0006 a0001c0001t0030	a0001c0001t0006g0005 a0001c0001t0030g0005 a0001c0001t0006g0005 a0001c0001t0030g0005	3	270	0.0111	-10	c.510 others(25): Show c.510+624_510+633delATATATATAT	SNX1	ENSG00000028528.15	transcript	ENST00000559844.6	protein_coding	5/14		INFO_REALIGN_3_PRIME	chr15	TogoVar
SNX20_chr16_50666629_50686312	50685036	TATCTCAT others(3): Show TATCTCATCTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 HG03139.hp1 HG00140.hp2 HG03139.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0006 a0002c0002t0002 a0001c0001t0006 a0002c0002t0002	a0001c0001t0006g0189 a0002c0002t0002g0171 a0001c0001t0006g0189 a0002c0002t0002g0171	2	416	0.0048	-10	c.-38 others(21): Show c.-3866_-3857delGAGATGAGAT	SNX20	ENSG00000167208.16	transcript	ENST00000330943.9	protein_coding		3725		chr16	TogoVar
SNX24_chr5_122840613_123014205	122933446	ACTCAGGG others(3): Show ACTCAGGGGAT	A A	intron_variant intron_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0017 a0001c0001t0002g0017	1	330	0.0030	-10	c.61- others(25): Show c.61-3286_61-3277delTCAGGGGATC	SNX24	ENSG00000064652.11	transcript	ENST00000261369.9	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX24_chr5_122840613_123014205	122956367	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00280.hp1 others(251): Show HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01255.hp2 HG01258.hp1 HG01261.hp1 HG01261.hp2 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01496.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp2 HG01943.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp2 HG02451.hp1 HG02486.hp2 HG02523.hp1 HG02572.hp1 HG02572.hp2 HG02602.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02683.hp1 HG02723.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03492.hp1 HG03516.hp1 HG03540.hp1 HG03579.hp1 HG03579.hp2 HG03688.hp1 HG03688.hp2 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04199.hp2 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18747.hp2 NA18906.hp1 NA18939.hp1 NA18939.hp2 NA18944.hp1 NA18948.hp1 NA18948.hp2 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18955.hp1 NA18955.hp2 NA18959.hp1 NA18959.hp2 NA18960.hp1 NA18961.hp1 NA18961.hp2 NA18965.hp1 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18967.hp2 NA18968.hp1 NA18970.hp1 NA18970.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18987.hp1 NA18987.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA18995.hp2 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19009.hp1 NA19009.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp2 NA19012.hp2 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp2 NA19068.hp1 NA19074.hp2 NA19077.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19084.hp1 NA19089.hp1 NA19089.hp2 NA19090.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0009 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0017 a0001c0001t0019	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0019 others(250): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0043 a0001c0001t0001g0045 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0110 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0156 a0001c0001t0001g0168 a0001c0001t0001g0181 a0001c0001t0001g0215 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0230 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0259 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0001g0277 a0001c0001t0001g0279 a0001c0001t0001g0280 a0001c0001t0001g0281 a0001c0001t0001g0283 a0001c0001t0001g0284 a0001c0001t0001g0285 a0001c0001t0001g0287 a0001c0001t0001g0288 a0001c0001t0001g0289 a0001c0001t0001g0290 a0001c0001t0001g0292 a0001c0001t0001g0293 a0001c0001t0001g0294 a0001c0001t0001g0295 a0001c0001t0001g0296 a0001c0001t0001g0297 a0001c0001t0001g0299 a0001c0001t0001g0301 a0001c0001t0001g0302 a0001c0001t0001g0305 a0001c0001t0001g0307 a0001c0001t0001g0308 a0001c0001t0001g0309 a0001c0001t0001g0310 a0001c0001t0001g0311 a0001c0001t0001g0312 a0001c0001t0001g0313 a0001c0001t0001g0314 a0001c0001t0001g0315 a0001c0001t0001g0316 a0001c0001t0001g0317 a0001c0001t0001g0323 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0006 a0001c0001t0002g0018 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0055 a0001c0001t0002g0065 a0001c0001t0002g0066 a0001c0001t0002g0098 a0001c0001t0002g0120 a0001c0001t0002g0121 a0001c0001t0002g0122 a0001c0001t0002g0123 a0001c0001t0002g0124 a0001c0001t0002g0125 a0001c0001t0002g0126 a0001c0001t0002g0127 a0001c0001t0002g0128 a0001c0001t0002g0129 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0132 a0001c0001t0002g0133 a0001c0001t0002g0135 a0001c0001t0002g0136 a0001c0001t0002g0137 a0001c0001t0002g0138 a0001c0001t0002g0139 a0001c0001t0002g0140 a0001c0001t0002g0141 a0001c0001t0002g0142 a0001c0001t0002g0143 a0001c0001t0002g0144 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0150 a0001c0001t0002g0151 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0154 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0162 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0174 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0197 a0001c0001t0002g0198 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0002g0209 a0001c0001t0002g0210 a0001c0001t0002g0211 a0001c0001t0002g0212 a0001c0001t0002g0213 a0001c0001t0002g0214 a0001c0001t0002g0216 a0001c0001t0002g0217 a0001c0001t0002g0218 a0001c0001t0002g0219 a0001c0001t0002g0220 a0001c0001t0002g0221 a0001c0001t0002g0222 a0001c0001t0002g0228 a0001c0001t0002g0229 a0001c0001t0002g0231 a0001c0001t0002g0236 a0001c0001t0002g0251 a0001c0001t0002g0256 a0001c0001t0002g0282 a0001c0001t0002g0298 a0001c0001t0002g0324 a0001c0001t0002g0325 a0001c0001t0004g0056 a0001c0001t0004g0102 a0001c0001t0004g0244 a0001c0001t0004g0245 a0001c0001t0004g0246 a0001c0001t0004g0247 a0001c0001t0004g0248 a0001c0001t0004g0249 a0001c0001t0004g0250 a0001c0001t0004g0300 a0001c0001t0005g0005 a0001c0001t0005g0044 a0001c0001t0005g0134 a0001c0001t0005g0206 a0001c0001t0007g0271 a0001c0001t0007g0291 a0001c0001t0009g0161 a0001c0001t0009g0163 a0001c0001t0012g0304 a0001c0001t0013g0303 a0001c0001t0014g0079 a0001c0001t0017g0080 a0001c0001t0019g0160	254	330	0.7697	-10	c.249 others(29): Show c.249+10238_249+10247delCACACACACA	SNX24	ENSG00000064652.11	transcript	ENST00000261369.9	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX25_chr4_185204598_185368966	185224410	GATATATA others(3): Show GATATATAAAA	G G	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0199 a0001c0001t0001g0199	1	276	0.0036	-10	c.429 others(29): Show c.429+14173_429+14182delAAAATATATA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185224548	CATATATA others(3): Show CATATATATAA	C C	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03486.hp1 HG03471.hp1 HG03486.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0003c0004t0001 a0001c0001t0001 a0003c0004t0001	a0001c0001t0001g0208 a0003c0004t0001g0209 a0001c0001t0001g0208 a0003c0004t0001g0209	2	276	0.0073	-10	c.429 others(29): Show c.429+14304_429+14313delATATATATAA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185224569	GTGTATAT others(3): Show GTGTATATAAA	G G	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00544.hp2 HG00639.hp2 others(73): Show HG00408.hp1 HG00544.hp2 HG00639.hp2 HG00741.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01192.hp1 HG01243.hp2 HG01257.hp1 HG01258.hp2 HG01346.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01928.hp1 HG01928.hp2 HG01952.hp1 HG01952.hp2 HG01993.hp1 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02080.hp1 HG02132.hp2 HG02148.hp1 HG02155.hp1 HG02165.hp1 HG02273.hp1 HG02293.hp1 HG02300.hp1 HG02559.hp1 HG02738.hp1 HG03688.hp1 HG03710.hp2 HG03834.hp1 HG03942.hp2 HG04184.hp2 HG06807.hp2 NA18612.hp2 NA18941.hp1 NA18943.hp2 NA18947.hp1 NA18954.hp2 NA18955.hp2 NA18957.hp2 NA18963.hp2 NA18971.hp1 NA18983.hp1 NA18983.hp2 NA18984.hp2 NA18988.hp1 NA18990.hp2 NA18992.hp1 NA18993.hp1 NA18993.hp2 NA18994.hp2 NA19000.hp1 NA19000.hp2 NA19002.hp2 NA19009.hp1 NA19010.hp1 NA19012.hp1 NA19054.hp2 NA19056.hp2 NA19057.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19065.hp2 NA19070.hp1 NA19080.hp1 NA20752.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	a0001 a0009 a0014 a0001 a0009 a0014	a0001c0001 a0001c0003 a0001c0009 others(3): Show a0001c0001 a0001c0003 a0001c0009 a0001c0014 a0009c0012 a0014c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0003t0001 a0001c0009t0001 a0001c0014t0001 a0009c0012t0001 a0014c0011t0001	a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 others(73): Show a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0052 a0001c0001t0001g0058 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0132 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0180 a0001c0001t0002g0099 a0001c0001t0002g0100 a0001c0001t0002g0142 a0001c0001t0002g0143 a0001c0001t0002g0144 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0154 a0001c0001t0002g0165 a0001c0001t0003g0096 a0001c0001t0006g0159 a0001c0003t0001g0097 a0001c0003t0001g0151 a0001c0003t0001g0166 a0001c0003t0001g0168 a0001c0003t0001g0273 a0001c0009t0001g0233 a0001c0014t0001g0066 a0009c0012t0001g0130 a0014c0011t0001g0115	76	276	0.2754	-10	c.429 others(29): Show c.429+14316_429+14325delGTATATAAAT	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185251598	CGTGTGTG others(3): Show CGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02615.hp2 HG02717.hp2 others(5): Show HG02257.hp2 HG02615.hp2 HG02717.hp2 HG02818.hp1 HG04115.hp1 NA18522.hp1 NA19043.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0235 others(5): Show a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0235 a0002c0002t0001g0264 a0002c0002t0001g0265 a0002c0002t0001g0266 a0002c0002t0001g0271 a0002c0002t0001g0272	8	276	0.0290	-10	c.514 others(27): Show c.514+4250_514+4259delTGTGTGTGTG	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185261114	CTGTGTGT others(3): Show CTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02723.hp1 HG02735.hp1 others(2): Show HG02109.hp2 HG02723.hp1 HG02735.hp1 HG02895.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0050 a0001c0001t0001g0054 a0001c0001t0001g0055 others(2): Show a0001c0001t0001g0050 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0206	5	276	0.0181	-10	c.731 others(27): Show c.731+2084_731+2093delGTGTGTGTGT	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185297819	ATCTAAAT others(3): Show ATCTAAATGTT	A A	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02615.hp1 HG03130.hp1 HG02572.hp2 HG02615.hp1 HG03130.hp1	a0001 a0003 a0001 a0003	a0001c0006 a0003c0007 a0001c0006 a0003c0007	a0001c0006t0001 a0003c0007t0001 a0001c0006t0001 a0003c0007t0001	a0001c0006t0001g0075 a0001c0006t0001g0076 a0003c0007t0001g0077 a0001c0006t0001g0075 a0001c0006t0001g0076 a0003c0007t0001g0077	3	276	0.0109	-10	c.116 others(29): Show c.1162+9740_1162+9749delTAAATGTTTC	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	6/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185300840	GACACACA others(3): Show GACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG02145.hp1 HG02698.hp2 others(8): Show HG00621.hp2 HG02145.hp1 HG02698.hp2 HG02738.hp2 HG03195.hp1 NA18942.hp2 NA18964.hp2 NA18973.hp1 NA18994.hp1 NA19070.hp2 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(8): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0244	11	276	0.0399	-10	c.116 others(29): Show c.1163-9769_1163-9760delCACACACACA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	6/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185335316	TCACACAC others(3): Show TCACACACACA	T T	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02615.hp1 HG02895.hp2 others(1): Show HG02572.hp2 HG02615.hp1 HG02895.hp2 HG03130.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0006 a0003c0007 a0001c0001 a0001c0006 a0003c0007	a0001c0001t0001 a0001c0006t0001 a0003c0007t0001 a0001c0001t0001 a0001c0006t0001 a0003c0007t0001	a0001c0001t0001g0054 a0001c0006t0001g0075 a0001c0006t0001g0076 others(1): Show a0001c0001t0001g0054 a0001c0006t0001g0075 a0001c0006t0001g0076 a0003c0007t0001g0077	4	276	0.0145	-10	c.191 others(29): Show c.1914+2590_1914+2599delCACACACACA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	10/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185347458	CTTTTGTT others(3): Show CTTTTGTTTTG	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp2 HG06807.hp2 HG01243.hp1 HG01243.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0114 a0001c0001t0001g0120 a0001c0001t0001g0016 a0001c0001t0001g0114 a0001c0001t0001g0120	3	276	0.0109	-10	c.230 others(27): Show c.2301+829_2301+838delTTTTGTTTTG	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	13/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX27_chr1_151607050_151704080	151627741	TGTTCTAT others(3): Show TGTTCTATAAA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(87): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00408.hp1 HG00544.hp1 HG00609.hp2 HG00642.hp2 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG01071.hp2 HG01074.hp2 HG01167.hp2 HG01168.hp2 HG01192.hp2 HG01255.hp2 HG01256.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01358.hp1 HG01515.hp2 HG01884.hp1 HG01934.hp1 HG01934.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG02015.hp1 HG02040.hp2 HG02074.hp2 HG02080.hp2 HG02132.hp1 HG02300.hp2 HG02602.hp2 HG02698.hp1 HG02738.hp1 HG02896.hp1 HG03195.hp1 HG03209.hp2 HG03239.hp2 HG03491.hp1 HG03492.hp2 HG03516.hp2 HG03579.hp1 HG03654.hp2 HG03688.hp2 HG03704.hp1 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 NA18612.hp2 NA18906.hp2 NA18939.hp1 NA18943.hp1 NA18944.hp2 NA18947.hp1 NA18953.hp1 NA18954.hp2 NA18961.hp2 NA18966.hp1 NA18967.hp1 NA18971.hp2 NA18979.hp2 NA18983.hp1 NA18988.hp1 NA18992.hp2 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19009.hp2 NA19011.hp1 NA19012.hp2 NA19057.hp1 NA19058.hp1 NA19060.hp2 NA19062.hp1 NA19064.hp2 NA19066.hp1 NA19067.hp2 NA19070.hp1 NA19074.hp1 NA19083.hp2 NA19084.hp1 NA19091.hp2 NA20129.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(29): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0013 a0001c0001t0015 a0001c0001t0021 a0001c0001t0022 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0001t0028 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0055 a0001c0001t0056 a0001c0001t0071 a0001c0001t0072 a0001c0001t0073 a0001c0001t0074 a0001c0001t0075 a0001c0001t0079 a0001c0001t0082 a0001c0001t0083 a0001c0001t0084 a0001c0001t0085 a0001c0001t0086 a0001c0001t0087 a0001c0001t0088 a0001c0007t0001	a0001c0001t0001g0113 a0001c0001t0001g0117 a0001c0001t0001g0118 others(87): Show a0001c0001t0001g0113 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0125 a0001c0001t0001g0127 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0132 a0001c0001t0001g0136 a0001c0001t0003g0006 a0001c0001t0003g0098 a0001c0001t0003g0099 a0001c0001t0003g0100 a0001c0001t0003g0111 a0001c0001t0003g0116 a0001c0001t0003g0141 a0001c0001t0003g0142 a0001c0001t0003g0145 a0001c0001t0003g0149 a0001c0001t0003g0153 a0001c0001t0004g0139 a0001c0001t0004g0156 a0001c0001t0004g0158 a0001c0001t0004g0159 a0001c0001t0004g0166 a0001c0001t0004g0167 a0001c0001t0004g0184 a0001c0001t0004g0316 a0001c0001t0004g0317 a0001c0001t0005g0140 a0001c0001t0005g0147 a0001c0001t0005g0148 a0001c0001t0005g0150 a0001c0001t0005g0154 a0001c0001t0005g0164 a0001c0001t0005g0318 a0001c0001t0013g0171 a0001c0001t0013g0174 a0001c0001t0013g0175 a0001c0001t0013g0182 a0001c0001t0013g0183 a0001c0001t0015g0157 a0001c0001t0021g0143 a0001c0001t0021g0162 a0001c0001t0021g0163 a0001c0001t0021g0340 a0001c0001t0022g0172 a0001c0001t0022g0320 a0001c0001t0022g0321 a0001c0001t0025g0128 a0001c0001t0025g0135 a0001c0001t0025g0185 a0001c0001t0026g0114 a0001c0001t0026g0133 a0001c0001t0026g0137 a0001c0001t0027g0343 a0001c0001t0027g0347 a0001c0001t0027g0348 a0001c0001t0028g0144 a0001c0001t0028g0170 a0001c0001t0028g0319 a0001c0001t0041g0161 a0001c0001t0041g0345 a0001c0001t0042g0112 a0001c0001t0042g0151 a0001c0001t0043g0176 a0001c0001t0043g0177 a0001c0001t0044g0160 a0001c0001t0055g0115 a0001c0001t0055g0124 a0001c0001t0056g0173 a0001c0001t0056g0178 a0001c0001t0071g0152 a0001c0001t0072g0349 a0001c0001t0073g0344 a0001c0001t0074g0146 a0001c0001t0075g0165 a0001c0001t0079g0155 a0001c0001t0082g0123 a0001c0001t0083g0126 a0001c0001t0084g0138 a0001c0001t0085g0346 a0001c0001t0086g0131 a0001c0001t0087g0179 a0001c0001t0088g0180 a0001c0007t0001g0134	90	366	0.2459	-10	c.312 others(29): Show c.312-11138_312-11129delAAGTTCTATA	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151641598	GATATATA others(3): Show GATATATATAT	G G	intron_variant intron_variant	MODIFIER	NA18997.hp2 NA18997.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0188 a0001c0001t0006g0188	1	366	0.0027	-10	c.543 others(27): Show c.543+2502_543+2511delATATATATAT	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151650747	GGCCTTCC others(3): Show GGCCTTCCGCA	G G	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0141 a0001c0001t0141	a0001c0001t0141g0013 a0001c0001t0141g0013	1	366	0.0027	-10	c.544 others(27): Show c.544-7486_544-7477delCCTTCCGCAG	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151659236	TTTTTGTT others(3): Show TTTTTGTTTTG	T T	intron_variant intron_variant	MODIFIER	NA18941.hp1 NA19009.hp1 NA18941.hp1 NA19009.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0048 a0002c0002t0048	a0002c0002t0048g0218 a0002c0002t0048g0219 a0002c0002t0048g0218 a0002c0002t0048g0219	2	366	0.0055	-10	c.736 others(25): Show c.736+830_736+839delTTTTGTTTTG	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	3/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151676270	ATTTTTTT others(3): Show ATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA19003.hp1 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0057 a0001c0001t0002g0057	1	366	0.0027	-10	c.115 others(29): Show c.1150-7042_1150-7033delTTTTTTTTTT	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX29_chr16_11971734_12579287	12013498	AAAATATA others(3): Show AAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01261.hp2 HG01884.hp1 HG01109.hp1 HG01261.hp2 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0013 a0001c0002t0024 a0001c0002t0069 a0001c0001t0013 a0001c0002t0024 a0001c0002t0069	a0001c0001t0013g0016 a0001c0002t0024g0050 a0001c0002t0069g0017 a0001c0001t0013g0016 a0001c0002t0024g0050 a0001c0002t0069g0017	3	176	0.0171	-10	c.122 others(29): Show c.122+10457_122+10466delAATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013500	AATATATA others(3): Show AATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00738.hp2 HG00741.hp2 others(5): Show HG00738.hp1 HG00738.hp2 HG00741.hp2 HG01257.hp1 HG03098.hp1 HG03098.hp2 HG03490.hp1 NA20805.hp1	a0001 a0009 a0001 a0009	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0009c0009	a0001c0001t0004 a0001c0001t0048 a0001c0001t0061 others(4): Show a0001c0001t0004 a0001c0001t0048 a0001c0001t0061 a0001c0002t0087 a0001c0003t0002 a0001c0003t0004 a0009c0009t0001	a0001c0001t0004g0078 a0001c0001t0048g0052 a0001c0001t0061g0173 others(5): Show a0001c0001t0004g0078 a0001c0001t0048g0052 a0001c0001t0061g0173 a0001c0002t0087g0147 a0001c0003t0002g0077 a0001c0003t0002g0097 a0001c0003t0004g0176 a0009c0009t0001g0043	8	176	0.0455	-10	c.122 others(29): Show c.122+10490_122+10499delATATATATAT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12023585	AAAAAGAA others(3): Show AAAAAGAAAAG	A A	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02257.hp1 HG02258.hp1 others(8): Show HG01884.hp2 HG02257.hp1 HG02258.hp1 HG02451.hp2 HG02559.hp2 HG02630.hp2 HG02896.hp1 HG02897.hp1 HG03225.hp2 HG03486.hp1 NA19240.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0005c0019	a0001c0001t0002 a0001c0001t0006 a0001c0002t0018 others(7): Show a0001c0001t0002 a0001c0001t0006 a0001c0002t0018 a0001c0002t0086 a0001c0002t0107 a0001c0004t0020 a0001c0004t0079 a0001c0004t0080 a0001c0004t0099 a0005c0019t0019	a0001c0001t0002g0065 a0001c0001t0006g0064 a0001c0002t0018g0037 others(8): Show a0001c0001t0002g0065 a0001c0001t0006g0064 a0001c0002t0018g0037 a0001c0002t0086g0066 a0001c0002t0107g0069 a0001c0004t0020g0038 a0001c0004t0020g0055 a0001c0004t0079g0070 a0001c0004t0080g0054 a0001c0004t0099g0125 a0005c0019t0019g0067	11	176	0.0625	-10	c.123 others(27): Show c.123-3716_123-3707delAGAAAAGAAA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12125603	CTCTTTTT others(3): Show CTCTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02976.hp2 HG03225.hp2 others(1): Show HG02622.hp1 HG02976.hp2 HG03225.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0006 a0001c0001t0012 others(1): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0012 a0001c0002t0019	a0001c0001t0002g0169 a0001c0001t0006g0064 a0001c0001t0012g0009 others(1): Show a0001c0001t0002g0169 a0001c0001t0006g0064 a0001c0001t0012g0009 a0001c0002t0019g0174	4	176	0.0227	-10	c.140 others(29): Show c.1403-1028_1403-1019delCTTTTTTTTT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	11/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12125605	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0099 a0001c0004t0099	a0001c0004t0099g0125 a0001c0004t0099g0125	1	176	0.0057	-10	c.140 others(28): Show c.1403-1001_1403-992delTTTTTTTTTT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	11/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12158919	CAGAACGA others(3): Show CAGAACGAGGA	C C	intron_variant intron_variant	MODIFIER	NA19090.hp2 NA19090.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0032 a0001c0002t0005g0032	1	176	0.0057	-10	c.159 others(31): Show c.1595+29162_1595+29171delAGAACGAGGA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	13/20			chr16	TogoVar
SNX29_chr16_11971734_12579287	12240585	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02622.hp1 HG02976.hp2 others(5): Show HG02615.hp2 HG02622.hp1 HG02976.hp2 HG03225.hp2 HG03486.hp2 NA18522.hp1 NA19043.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0022	a0001c0001t0002 a0001c0001t0006 a0001c0001t0012 others(5): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0012 a0001c0001t0052 a0001c0002t0019 a0001c0003t0016 a0001c0004t0021 a0001c0022t0049	a0001c0001t0002g0169 a0001c0001t0006g0064 a0001c0001t0012g0009 others(5): Show a0001c0001t0002g0169 a0001c0001t0006g0064 a0001c0001t0012g0009 a0001c0001t0052g0026 a0001c0002t0019g0174 a0001c0003t0016g0029 a0001c0004t0021g0080 a0001c0022t0049g0061	8	176	0.0455	-10	c.167 others(31): Show c.1679-37330_1679-37321delTTTTTTTTTT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	14/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12355843	TAAAAAAA others(3): Show TAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00558.hp1 others(47): Show HG00140.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp1 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp2 HG01074.hp2 HG01081.hp2 HG01175.hp2 HG01261.hp1 HG01261.hp2 HG01358.hp2 HG01496.hp1 HG01884.hp1 HG01891.hp2 HG01993.hp1 HG02109.hp1 HG02109.hp2 HG02451.hp1 HG02622.hp2 HG02683.hp1 HG02897.hp1 HG02965.hp2 HG02976.hp2 HG03017.hp2 HG03098.hp1 HG03471.hp2 HG03490.hp2 HG03491.hp2 HG03579.hp1 HG03579.hp2 HG03688.hp2 HG03704.hp2 HG03710.hp1 HG03834.hp1 HG04115.hp1 HG06807.hp1 NA18906.hp2 NA18942.hp1 NA19060.hp1 NA19090.hp2 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0014 a0001c0021 a0001c0023 a0001c0025 a0002c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0013 others(40): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0013 a0001c0001t0014 a0001c0001t0036 a0001c0001t0048 a0001c0001t0063 a0001c0001t0110 a0001c0002t0003 a0001c0002t0005 a0001c0002t0018 a0001c0002t0019 a0001c0002t0024 a0001c0002t0066 a0001c0002t0073 a0001c0002t0088 a0001c0002t0093 a0001c0002t0106 a0001c0002t0109 a0001c0003t0001 a0001c0003t0002 a0001c0003t0004 a0001c0003t0016 a0001c0003t0029 a0001c0003t0037 a0001c0003t0043 a0001c0003t0053 a0001c0003t0057 a0001c0003t0062 a0001c0004t0003 a0001c0004t0005 a0001c0004t0020 a0001c0004t0023 a0001c0004t0072 a0001c0004t0083 a0001c0004t0085 a0001c0004t0095 a0001c0004t0105 a0001c0014t0015 a0001c0021t0111 a0001c0023t0008 a0001c0025t0096 a0002c0005t0045	a0001c0001t0001g0112 a0001c0001t0001g0163 a0001c0001t0002g0081 others(47): Show a0001c0001t0001g0112 a0001c0001t0001g0163 a0001c0001t0002g0081 a0001c0001t0013g0016 a0001c0001t0014g0118 a0001c0001t0036g0030 a0001c0001t0048g0052 a0001c0001t0063g0039 a0001c0001t0110g0162 a0001c0002t0003g0134 a0001c0002t0005g0032 a0001c0002t0005g0084 a0001c0002t0018g0034 a0001c0002t0019g0174 a0001c0002t0024g0050 a0001c0002t0066g0106 a0001c0002t0073g0096 a0001c0002t0088g0018 a0001c0002t0093g0086 a0001c0002t0106g0123 a0001c0002t0109g0036 a0001c0003t0001g0103 a0001c0003t0001g0158 a0001c0003t0002g0077 a0001c0003t0002g0097 a0001c0003t0002g0119 a0001c0003t0004g0092 a0001c0003t0004g0094 a0001c0003t0004g0176 a0001c0003t0016g0005 a0001c0003t0029g0053 a0001c0003t0037g0142 a0001c0003t0043g0074 a0001c0003t0053g0131 a0001c0003t0057g0105 a0001c0003t0062g0075 a0001c0004t0003g0138 a0001c0004t0005g0115 a0001c0004t0020g0055 a0001c0004t0023g0149 a0001c0004t0072g0114 a0001c0004t0083g0068 a0001c0004t0085g0023 a0001c0004t0095g0151 a0001c0004t0105g0042 a0001c0014t0015g0165 a0001c0021t0111g0035 a0001c0023t0008g0110 a0001c0025t0096g0076 a0002c0005t0045g0088	50	176	0.2841	-10	c.178 others(27): Show c.1783-296_1783-287delAAAAAAAAAA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	15/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12364161	TTGTTATG others(3): Show TTGTTATGTTA	T T	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01071.hp2 HG01175.hp2 HG01069.hp1 HG01071.hp2 HG01175.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0043 a0001c0003t0004 a0001c0003t0043	a0001c0003t0004g0092 a0001c0003t0004g0094 a0001c0003t0043g0074 a0001c0003t0004g0092 a0001c0003t0004g0094 a0001c0003t0043g0074	3	176	0.0171	-10	c.189 others(29): Show c.1899+7929_1899+7938delGTTATGTTAT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	16/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12365326	TTGTGTGT others(3): Show TTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02451.hp1 NA18522.hp2 HG02451.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0067 a0001c0001t0002 a0001c0002t0067	a0001c0001t0002g0081 a0001c0002t0067g0059 a0001c0001t0002g0081 a0001c0002t0067g0059	2	176	0.0114	-10	c.189 others(29): Show c.1899+9077_1899+9086delGTGTGTGTGT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	16/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12403192	TTGTGTGT others(3): Show TTGTGTGTGTA	T T	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01496.hp2 HG02965.hp1 others(1): Show HG01175.hp1 HG01496.hp2 HG02965.hp1 HG03486.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0006 a0002c0005 a0001c0001 a0001c0006 a0002c0005	a0001c0001t0002 a0001c0001t0012 a0001c0006t0021 others(1): Show a0001c0001t0002 a0001c0001t0012 a0001c0006t0021 a0002c0005t0039	a0001c0001t0002g0169 a0001c0001t0012g0056 a0001c0006t0021g0073 others(1): Show a0001c0001t0002g0169 a0001c0001t0012g0056 a0001c0006t0021g0073 a0002c0005t0039g0013	4	176	0.0227	-10	c.195 others(27): Show c.1956-246_1956-237delATGTGTGTGT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	17/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12403202	ATGTGTGT others(3): Show ATGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG03209.hp1 HG03490.hp2 others(2): Show HG00639.hp1 HG03209.hp1 HG03490.hp2 NA18522.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0022 a0001c0001 a0001c0004 a0001c0022	a0001c0001t0001 a0001c0004t0021 a0001c0004t0092 others(2): Show a0001c0001t0001 a0001c0004t0021 a0001c0004t0092 a0001c0004t0105 a0001c0022t0049	a0001c0001t0001g0112 a0001c0004t0021g0080 a0001c0004t0092g0102 others(2): Show a0001c0001t0001g0112 a0001c0004t0021g0080 a0001c0004t0092g0102 a0001c0004t0105g0042 a0001c0022t0049g0061	5	176	0.0284	-10	c.195 others(27): Show c.1956-202_1956-193delGTGTGTGTGT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	17/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12421938	TCATCCAT others(3): Show TCATCCATCAC	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0127 a0001c0001t0001g0127	1	176	0.0057	-10	c.203 others(31): Show c.2037+18414_2037+18423delCATCACCATC	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12425552	AATAAAAA others(3): Show AATAAAAAGAG	A A	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02559.hp1 HG02451.hp1 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0012 a0001c0001 a0001c0012	a0001c0001t0002 a0001c0012t0002 a0001c0001t0002 a0001c0012t0002	a0001c0001t0002g0081 a0001c0012t0002g0028 a0001c0001t0002g0081 a0001c0012t0002g0028	2	176	0.0114	-10	c.203 others(31): Show c.2037+22024_2037+22033delATAAAAAGAG	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20			chr16	TogoVar
SNX29_chr16_11971734_12579287	12476351	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0087 a0001c0001t0035g0087	1	176	0.0057	-10	c.203 others(29): Show c.2038-1344_2038-1335delAAAAAAAAAA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12476375	AAAAAAAA others(3): Show AAAAAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0063 a0001c0001t0063	a0001c0001t0063g0039 a0001c0001t0063g0039	1	176	0.0057	-10	c.203 others(29): Show c.2038-1342_2038-1333delAAAAAAAATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12476377	AAAAAAAA others(3): Show AAAAAAAATAT	A A	intron_variant intron_variant	MODIFIER	HG02015.hp2 HG02015.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0005 a0001c0004t0005	a0001c0004t0005g0171 a0001c0004t0005g0171	1	176	0.0057	-10	c.203 others(29): Show c.2038-1340_2038-1331delAAAAAATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12476379	AAAAAATA others(3): Show AAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02630.hp1 HG03540.hp1 others(1): Show HG02258.hp1 HG02630.hp1 HG03540.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0020	a0001c0001t0034 a0001c0002t0107 a0001c0003t0054 others(1): Show a0001c0001t0034 a0001c0002t0107 a0001c0003t0054 a0001c0020t0010	a0001c0001t0034g0063 a0001c0002t0107g0069 a0001c0003t0054g0117 others(1): Show a0001c0001t0034g0063 a0001c0002t0107g0069 a0001c0003t0054g0117 a0001c0020t0010g0167	4	176	0.0227	-10	c.203 others(29): Show c.2038-1338_2038-1329delAAAATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12476381	AAAATATA others(3): Show AAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0029 a0001c0003t0029	a0001c0003t0029g0053 a0001c0003t0029g0053	1	176	0.0057	-10	c.203 others(29): Show c.2038-1336_2038-1327delAATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar

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