view | regionname | pos | ref | alt | annotation | impact | samples | ahapids | chapids | thapids | thapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SPTAN1_chr9_128547587_128638662 | 128586112 | GTTTTTTT others(3): Show |
G | intron_variant | MODIFIER | HG01891.hp2 HG02922.hp2 HG03516.hp2 others(1): Show |
a0001 | a0001c0009a0001c0016 | a0001c0009t0001a0001c0016t0001 | a0001c0009t0001g0004 a0001c0009t0001g0025 a0001c0009t0001g0026 others(1): Show |
4 | 312 | 0.0128 | -10 | c.277 others(27): Show |
SPTAN1 | ENSG00000197694.19 | transcript | ENST00000372739.7 | protein_coding | 19/56 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | ||||||
SPTAN1_chr9_128547587_128638662 | 128590687 | TAAAATAC others(3): Show |
T | intron_variant | MODIFIER | HG02615.hp1 HG02809.hp1 HG03540.hp1 |
a0001 | a0001c0010 | a0001c0010t0001 | a0001c0010t0001g0300 a0001c0010t0001g0301 a0001c0010t0001g0302 |
3 | 312 | 0.0096 | -10 | c.300 others(27): Show |
SPTAN1 | ENSG00000197694.19 | transcript | ENST00000372739.7 | protein_coding | 21/56 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | ||||||
SPTAN1_chr9_128547587_128638662 | 128624086 | CAAAAAAA others(3): Show |
C | intron_variant | MODIFIER | HG01884.hp2 | a0001 | a0001c0002 | a0001c0002t0001 | a0001c0002t0001g0266 | 1 | 312 | 0.0032 | -10 | c.583 others(27): Show |
SPTAN1 | ENSG00000197694.19 | transcript | ENST00000372739.7 | protein_coding | 45/56 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54453530 | TTTTTATT others(3): Show |
T | upstream_gene_variant | MODIFIER | HG00408.hp2 HG00423.hp2 HG02027.hp1 others(25): Show |
a0001a0002a0008 | a0001c0001a0001c0002a0001c0003others(4): Show | a0001c0001t0002a0001c0001t0004a0001c0001t0007others(10): Show | a0001c0001t0002g0007 a0001c0001t0002g0012 a0001c0001t0002g0015 others(25): Show |
28 | 370 | 0.0757 | -10 | c.-30 others(21): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2796 | chr2 | TogoVar | |||||||
SPTBN1_chr2_54451327_54676446 | 54463176 | AATCCTAT others(3): Show |
A | intron_variant | MODIFIER | HG01256.hp2 HG02055.hp2 HG02080.hp2 others(46): Show |
a0001a0002a0008others(1): Show | a0001c0001a0001c0002a0001c0005others(6): Show | a0001c0001t0002a0001c0001t0005a0001c0001t0018others(14): Show | a0001c0001t0002g0015 a0001c0001t0002g0030 a0001c0001t0005g0309 others(46): Show |
49 | 370 | 0.1324 | -10 | c.-48 others(27): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 1/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54466561 | CAAAAAAA others(3): Show |
C | intron_variant | MODIFIER | HG01175.hp2 | a0001 | a0001c0004 | a0001c0004t0004 | a0001c0004t0004g0318 | 1 | 370 | 0.0027 | -10 | c.-48 others(29): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 1/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54481391 | AGTGTGTG others(3): Show |
A | intron_variant | MODIFIER | HG01192.hp1 HG01257.hp2 HG01258.hp1 others(17): Show |
a0001a0002 | a0001c0001a0001c0004a0001c0005others(2): Show | a0001c0001t0004a0001c0001t0014a0001c0004t0002others(4): Show | a0001c0001t0004g0070 a0001c0001t0014g0104 a0001c0001t0014g0105 others(17): Show |
20 | 370 | 0.0541 | -10 | c.-48 others(29): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 1/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54483661 | GGGCACAG others(3): Show |
G | intron_variant | MODIFIER | HG00558.hp1 NA18946.hp1 NA18971.hp2 others(4): Show |
a0001 | a0001c0001a0001c0004 | a0001c0001t0002a0001c0004t0004 | a0001c0001t0002g0169 a0001c0001t0002g0215 a0001c0001t0002g0216 others(4): Show |
7 | 370 | 0.0189 | -10 | c.-48 others(29): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 1/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54493001 | CTTTTTTT others(3): Show |
C | intron_variant | MODIFIER | HG02559.hp2 HG02976.hp2 |
a0001 | a0001c0018 | a0001c0018t0007a0001c0018t0042 | a0001c0018t0007g0112 a0001c0018t0042g0027 |
2 | 370 | 0.0054 | -10 | c.-47 others(29): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 1/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54528987 | TGTGGGAC others(3): Show |
T | intron_variant | MODIFIER | HG02886.hp2 HG03471.hp1 HG03579.hp1 others(2): Show |
a0001 | a0001c0005 | a0001c0005t0008 | a0001c0005t0008g0048 a0001c0005t0008g0049 a0001c0005t0008g0050 others(2): Show |
5 | 370 | 0.0135 | -10 | c.148 others(27): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2/35 | chr2 | TogoVar | |||||||
SPTBN1_chr2_54451327_54676446 | 54533349 | AGTGTGTG others(3): Show |
A | intron_variant | MODIFIER | HG00609.hp2 HG02630.hp2 HG04204.hp1 others(10): Show |
a0001a0002a0009 | a0001c0002a0001c0003a0001c0025others(2): Show | a0001c0002t0001a0001c0002t0004a0001c0003t0003others(5): Show | a0001c0002t0001g0117 a0001c0002t0004g0101 a0001c0003t0003g0257 others(10): Show |
13 | 370 | 0.0351 | -10 | c.148 others(27): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54533900 | TCACACAC others(3): Show |
T | intron_variant | MODIFIER | HG01071.hp2 HG01081.hp2 HG01981.hp1 others(6): Show |
a0001 | a0001c0004a0001c0007a0001c0033 | a0001c0004t0007a0001c0004t0010a0001c0007t0013others(1): Show | a0001c0004t0007g0110 a0001c0004t0007g0173 a0001c0004t0010g0109 others(6): Show |
9 | 370 | 0.0243 | -10 | c.148 others(27): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54547734 | TGATAAAA others(3): Show |
T | intron_variant | MODIFIER | HG01346.hp2 HG02145.hp2 HG02486.hp2 others(17): Show |
a0001 | a0001c0005a0001c0007a0001c0008others(1): Show | a0001c0005t0008a0001c0005t0011a0001c0005t0021others(3): Show | a0001c0005t0008g0041 a0001c0005t0008g0048 a0001c0005t0008g0049 others(17): Show |
20 | 370 | 0.0541 | -10 | c.148 others(29): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54571566 | CACACACA others(3): Show |
C | intron_variant | MODIFIER | HG00140.hp1 HG00280.hp2 HG00323.hp2 others(97): Show |
a0001a0004a0008 | a0001c0001a0001c0002a0001c0003others(7): Show | a0001c0001t0029a0001c0002t0001a0001c0002t0004others(20): Show | a0001c0001t0029g0100 a0001c0002t0001g0009 a0001c0002t0001g0010 others(97): Show |
100 | 370 | 0.2703 | -10 | c.149 others(29): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54581577 | CTTTTTTT others(3): Show |
C | intron_variant | MODIFIER | HG03195.hp1 | a0001 | a0001c0004 | a0001c0004t0002 | a0001c0004t0002g0161 | 1 | 370 | 0.0027 | -10 | c.149 others(29): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54595993 | CTACCTTT others(3): Show |
C | intron_variant | MODIFIER | HG00099.hp1 HG00140.hp2 HG00280.hp1 others(108): Show |
a0001a0002a0003others(2): Show | a0001c0001a0001c0003a0001c0005others(10): Show | a0001c0001t0003a0001c0001t0007a0001c0001t0018others(30): Show | a0001c0001t0003g0059 a0001c0001t0003g0060 a0001c0001t0003g0061 others(108): Show |
111 | 370 | 0.3000 | -10 | c.149 others(27): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN4_chr19_40462001_40581464 | 40565271 | AAAAAGAA others(3): Show |
A | intron_variant | MODIFIER | HG02486.hp1 | a0017 | a0017c0052 | a0017c0052t0001 | a0017c0052t0001g0122 | 1 | 234 | 0.0043 | -10 | c.591 others(27): Show |
SPTBN4 | ENSG00000160460.17 | transcript | ENST00000598249.6 | protein_coding | 27/35 | INFO_REALIGN_3_PRIME | chr19 | TogoVar | ||||||
SPTBN4_chr19_40462001_40581464 | 40569936 | CCACACAC others(3): Show |
C | intron_variant | MODIFIER | HG02886.hp1 HG02976.hp2 |
a0001a0007 | a0001c0001a0007c0044 | a0001c0001t0001a0007c0044t0001 | a0001c0001t0001g0225 a0007c0044t0001g0167 |
2 | 234 | 0.0086 | -10 | c.702 others(27): Show |
SPTBN4 | ENSG00000160460.17 | transcript | ENST00000598249.6 | protein_coding | 32/35 | INFO_REALIGN_3_PRIME | chr19 | TogoVar | ||||||
SPTBN4_chr19_40462001_40581464 | 40577948 | TACACACA others(3): Show |
T | downstream_gene_variant | MODIFIER | HG01123.hp1 | a0013 | a0013c0046 | a0013c0046t0001 | a0013c0046t0001g0164 | 1 | 234 | 0.0043 | -10 | c.*23 others(21): Show |
SPTBN4 | ENSG00000160460.17 | transcript | ENST00000598249.6 | protein_coding | 1485 | chr19 | TogoVar | |||||||
SPTB_chr14_64741283_64884907 | 64830366 | TATTATTA others(3): Show |
T | intron_variant | MODIFIER | HG02818.hp2 | a0002 | a0002c0006 | a0002c0006t0001 | a0002c0006t0001g0200 | 1 | 268 | 0.0037 | -10 | c.-51 others(27): Show |
SPTB | ENSG00000070182.21 | transcript | ENST00000644917.1 | protein_coding | 1/35 | chr14 | TogoVar | |||||||
SPTB_chr14_64741283_64884907 | 64830367 | ATTATTAT others(3): Show |
A | intron_variant | MODIFIER | HG02630.hp1 HG02896.hp2 |
a0002 | a0002c0005a0002c0006 | a0002c0005t0009a0002c0006t0005 | a0002c0005t0009g0108 a0002c0006t0005g0158 |
2 | 268 | 0.0075 | -10 | c.-51 others(27): Show |
SPTB | ENSG00000070182.21 | transcript | ENST00000644917.1 | protein_coding | 1/35 | chr14 | TogoVar | |||||||
SPTB_chr14_64741283_64884907 | 64859694 | GTCTCTCT others(3): Show |
G | intron_variant | MODIFIER | HG01361.hp2 HG02109.hp1 HG02280.hp1 others(19): Show |
a0001a0002a0006others(4): Show | a0001c0002a0002c0003a0002c0005others(7): Show | a0001c0002t0003a0002c0003t0001a0002c0003t0002others(11): Show | a0001c0002t0003g0057 a0001c0002t0003g0058 a0002c0003t0001g0263 others(19): Show |
22 | 268 | 0.0821 | -10 | c.-52 others(29): Show |
SPTB | ENSG00000070182.21 | transcript | ENST00000644917.1 | protein_coding | 1/35 | chr14 | TogoVar | |||||||
SPTB_chr14_64741283_64884907 | 64859712 | CTCTCTCT others(3): Show |
C | intron_variant | MODIFIER | HG00642.hp1 HG01074.hp1 HG01168.hp1 others(32): Show |
a0001a0002a0006others(4): Show | a0001c0001a0001c0002a0001c0014others(14): Show | a0001c0001t0001a0001c0001t0006a0001c0001t0026others(23): Show | a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0135 others(32): Show |
35 | 268 | 0.1306 | -10 | c.-52 others(29): Show |
SPTB | ENSG00000070182.21 | transcript | ENST00000644917.1 | protein_coding | 1/35 | chr14 | TogoVar | |||||||
SPTB_chr14_64741283_64884907 | 64859714 | CTCTCTCT others(3): Show |
C | intron_variant | MODIFIER | HG00280.hp2 HG01081.hp1 HG01261.hp1 others(23): Show |
a0001a0002a0010others(2): Show | a0001c0001a0001c0002a0002c0003others(8): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0006others(15): Show | a0001c0001t0001g0008 a0001c0001t0001g0062 a0001c0001t0001g0148 others(22): Show |
26 | 268 | 0.0970 | -10 | c.-52 others(29): Show |
SPTB | ENSG00000070182.21 | transcript | ENST00000644917.1 | protein_coding | 1/35 | chr14 | TogoVar | |||||||
SPTB_chr14_64741283_64884907 | 64859716 | CTCTCTAT others(3): Show |
C | intron_variant | MODIFIER | HG00280.hp1 HG00323.hp2 HG00438.hp2 others(103): Show |
a0001a0002a0003others(12): Show | a0001c0001a0001c0002a0001c0009others(36): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(57): Show | a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0144 others(103): Show |
106 | 268 | 0.3955 | -10 | c.-52 others(29): Show |
SPTB | ENSG00000070182.21 | transcript | ENST00000644917.1 | protein_coding | 1/35 | chr14 | TogoVar | |||||||
SPTB_chr14_64741283_64884907 | 64859718 | CTCTATAT others(3): Show |
C | intron_variant | MODIFIER | HG02145.hp2 HG02622.hp1 HG02970.hp1 others(3): Show |
a0001 | a0001c0001a0001c0002a0001c0009 | a0001c0001t0024a0001c0002t0001a0001c0002t0002others(1): Show | a0001c0001t0024g0210 a0001c0002t0001g0184 a0001c0002t0001g0185 others(3): Show |
6 | 268 | 0.0224 | -10 | c.-52 others(29): Show |
SPTB | ENSG00000070182.21 | transcript | ENST00000644917.1 | protein_coding | 1/35 | chr14 | TogoVar | |||||||
SPTB_chr14_64741283_64884907 | 64859720 | CTATATAT others(3): Show |
C | intron_variant | MODIFIER | HG01109.hp2 HG01243.hp1 HG02615.hp1 others(7): Show |
a0001a0002a0006others(2): Show | a0001c0014a0001c0063a0002c0003others(4): Show | a0001c0014t0001a0001c0063t0004a0002c0003t0012others(4): Show | a0001c0014t0001g0193 a0001c0063t0004g0197 a0002c0003t0012g0159 others(7): Show |
10 | 268 | 0.0373 | -10 | c.-52 others(29): Show |
SPTB | ENSG00000070182.21 | transcript | ENST00000644917.1 | protein_coding | 1/35 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77534176 | TCTCACAC others(3): Show |
T | intron_variant | MODIFIER | HG00099.hp1 HG00408.hp2 HG00558.hp2 others(36): Show |
a0001 | a0001c0001a0001c0003 | a0001c0001t0001a0001c0001t0003a0001c0001t0005others(5): Show | a0001c0001t0001g0001 a0001c0001t0001g0036 a0001c0001t0001g0037 others(35): Show |
39 | 246 | 0.1585 | -10 | c.130 others(31): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 9/11 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77534178 | TCACACAC others(3): Show |
T | intron_variant | MODIFIER | HG00438.hp1 HG02602.hp2 |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0036 | a0001c0001t0001g0030 a0001c0001t0036g0084 |
2 | 246 | 0.0081 | -10 | c.130 others(31): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 9/11 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77564400 | TACACACA others(3): Show |
T | intron_variant | MODIFIER | HG01358.hp2 HG02451.hp2 HG02572.hp2 others(8): Show |
a0001 | a0001c0001a0001c0003 | a0001c0001t0001a0001c0001t0003a0001c0001t0019others(4): Show | a0001c0001t0001g0058 a0001c0001t0003g0184 a0001c0001t0003g0189 others(8): Show |
11 | 246 | 0.0447 | -10 | c.757 others(27): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 5/11 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77620882 | TTTTTCTT others(3): Show |
T | upstream_gene_variant | MODIFIER | HG00280.hp1 HG00438.hp2 HG00621.hp1 others(50): Show |
a0001 | a0001c0001a0001c0002a0001c0003others(3): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(19): Show | a0001c0001t0001g0019 a0001c0001t0001g0023 a0001c0001t0001g0058 others(50): Show |
53 | 246 | 0.2155 | -10 | c.-43 others(21): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 4246 | chr14 | TogoVar | |||||||
SPTLC3_chr20_13003972_13174103 | 13027637 | GCACGCAC others(3): Show |
G | intron_variant | MODIFIER | HG00741.hp1 HG01243.hp2 HG01515.hp2 others(2): Show |
a0001 | a0001c0001a0001c0012 | a0001c0001t0003a0001c0001t0014a0001c0001t0044others(2): Show | a0001c0001t0003g0072 a0001c0001t0014g0074 a0001c0001t0044g0073 others(2): Show |
5 | 292 | 0.0171 | -10 | c.117 others(29): Show |
SPTLC3 | ENSG00000172296.13 | transcript | ENST00000399002.7 | protein_coding | 1/11 | INFO_REALIGN_3_PRIME | chr20 | TogoVar | ||||||
SPTLC3_chr20_13003972_13174103 | 13027641 | GCACACAC others(3): Show |
G | intron_variant | MODIFIER | HG00140.hp1 HG00735.hp2 HG01123.hp2 others(13): Show |
a0001 | a0001c0001a0001c0005a0001c0009others(1): Show | a0001c0001t0001a0001c0001t0004a0001c0001t0007others(9): Show | a0001c0001t0001g0159 a0001c0001t0001g0211 a0001c0001t0004g0238 others(13): Show |
16 | 292 | 0.0548 | -10 | c.117 others(29): Show |
SPTLC3 | ENSG00000172296.13 | transcript | ENST00000399002.7 | protein_coding | 1/11 | INFO_REALIGN_3_PRIME | chr20 | TogoVar | ||||||
SPTLC3_chr20_13003972_13174103 | 13044995 | CCACACAC others(3): Show |
C | intron_variant | MODIFIER | HG00423.hp1 HG00423.hp2 HG00621.hp1 others(66): Show |
a0001a0002a0003others(3): Show | a0001c0001a0001c0003a0001c0005others(7): Show | a0001c0001t0003a0001c0001t0008a0001c0001t0015others(26): Show | a0001c0001t0003g0192 a0001c0001t0008g0034 a0001c0001t0008g0035 others(66): Show |
69 | 292 | 0.2363 | -10 | c.118 others(27): Show |
SPTLC3 | ENSG00000172296.13 | transcript | ENST00000399002.7 | protein_coding | 1/11 | INFO_REALIGN_3_PRIME | chr20 | TogoVar | ||||||
SPTLC3_chr20_13003972_13174103 | 13067044 | CATATATA others(3): Show |
C | intron_variant | MODIFIER | HG02155.hp1 HG03130.hp1 NA18988.hp2 |
a0002 | a0002c0002a0002c0006 | a0002c0002t0001a0002c0002t0052a0002c0006t0006 | a0002c0002t0001g0212 a0002c0002t0052g0087 a0002c0006t0006g0023 |
3 | 292 | 0.0103 | -10 | c.304 others(27): Show |
SPTLC3 | ENSG00000172296.13 | transcript | ENST00000399002.7 | protein_coding | 2/11 | INFO_REALIGN_3_PRIME | chr20 | TogoVar | ||||||
SPTLC3_chr20_13003972_13174103 | 13113058 | CCATAATC others(3): Show |
C | intron_variant | MODIFIER | HG03491.hp1 | a0001 | a0001c0005 | a0001c0005t0001 | a0001c0005t0001g0089 | 1 | 292 | 0.0034 | -10 | c.932 others(27): Show |
SPTLC3 | ENSG00000172296.13 | transcript | ENST00000399002.7 | protein_coding | 7/11 | chr20 | TogoVar | |||||||
SPTSSA_chr14_34427788_34467240 | 34443134 | GGTGTGTG others(3): Show |
G | intron_variant | MODIFIER | HG01069.hp1 HG02109.hp1 HG02280.hp1 others(9): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0001t0005a0001c0001t0016others(1): Show | a0001c0001t0001g0160 a0001c0001t0005g0022 a0001c0001t0005g0023 others(9): Show |
12 | 344 | 0.0349 | -10 | c.113 others(27): Show |
SPTSSA | ENSG00000165389.7 | transcript | ENST00000298130.5 | protein_coding | 1/1 | chr14 | TogoVar | |||||||
SPTSSA_chr14_34427788_34467240 | 34443355 | AGTGTGTG others(3): Show |
A | intron_variant | MODIFIER | HG03130.hp2 HG03139.hp2 NA18522.hp2 |
a0001 | a0001c0001 | a0001c0001t0009a0001c0001t0026 | a0001c0001t0009g0327 a0001c0001t0009g0328 a0001c0001t0026g0329 |
3 | 344 | 0.0087 | -10 | c.113 others(27): Show |
SPTSSA | ENSG00000165389.7 | transcript | ENST00000298130.5 | protein_coding | 1/1 | chr14 | TogoVar | |||||||
SPTSSA_chr14_34427788_34467240 | 34462894 | GCACACAC others(3): Show |
G | upstream_gene_variant | MODIFIER | HG00438.hp1 HG00639.hp2 HG00642.hp1 others(33): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002 | a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 others(33): Show |
36 | 344 | 0.1047 | -10 | c.-69 others(19): Show |
SPTSSA | ENSG00000165389.7 | transcript | ENST00000298130.5 | protein_coding | 655 | chr14 | TogoVar | |||||||
SPTSSA_chr14_34427788_34467240 | 34462932 | ACACACAC others(3): Show |
A | upstream_gene_variant | MODIFIER | HG00140.hp2 HG00280.hp2 HG00423.hp1 others(78): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(10): Show | a0001c0001t0001g0018 a0001c0001t0001g0090 a0001c0001t0001g0092 others(78): Show |
81 | 344 | 0.2355 | -10 | c.-73 others(19): Show |
SPTSSA | ENSG00000165389.7 | transcript | ENST00000298130.5 | protein_coding | 693 | chr14 | TogoVar | |||||||
SPTSSA_chr14_34427788_34467240 | 34467217 | AACACACA others(3): Show |
A | upstream_gene_variant | MODIFIER | HG01496.hp2 HG02451.hp1 HG02486.hp1 others(9): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0005a0001c0001t0009 | a0001c0001t0001g0019 a0001c0001t0001g0094 a0001c0001t0001g0095 others(9): Show |
12 | 344 | 0.0349 | -10 | c.-50 others(21): Show |
SPTSSA | ENSG00000165389.7 | transcript | ENST00000298130.5 | protein_coding | 4978 | chr14 | TogoVar | |||||||
SPTSSB_chr3_161339798_161376517 | 161348251 | GCAAAACA others(3): Show |
G | intron_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00280.hp1 others(103): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(2): Show | a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0005 others(56): Show |
106 | 412 | 0.2573 | -10 | c.-32 others(27): Show |
SPTSSB | ENSG00000196542.9 | transcript | ENST00000620149.2 | protein_coding | 2/2 | chr3 | TogoVar | |||||||
SPTSSB_chr3_161339798_161376517 | 161368116 | ATTTCATA others(3): Show |
A | intron_variant | MODIFIER | NA19081.hp1 | a0001 | a0001c0001 | a0001c0001t0002 | a0001c0001t0002g0111 | 1 | 412 | 0.0024 | -10 | c.-12 others(29): Show |
SPTSSB | ENSG00000196542.9 | transcript | ENST00000620149.2 | protein_coding | 1/2 | chr3 | TogoVar | |||||||
SPTSSB_chr3_161339798_161376517 | 161369304 | TTCTTTCT others(3): Show |
T | intron_variant | MODIFIER | HG00423.hp1 HG01069.hp1 HG01884.hp2 others(9): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0004a0001c0001t0006others(1): Show | a0001c0001t0001g0053 a0001c0001t0001g0223 a0001c0001t0001g0224 others(7): Show |
12 | 412 | 0.0291 | -10 | c.-12 others(29): Show |
SPTSSB | ENSG00000196542.9 | transcript | ENST00000620149.2 | protein_coding | 1/2 | chr3 | TogoVar | |||||||
SPTY2D1_chr11_18601403_18639342 | 18621323 | CAGAAAAG others(3): Show |
C | intron_variant | MODIFIER | HG01106.hp1 HG01978.hp2 HG01993.hp2 others(29): Show |
a0001a0002a0009 | a0001c0001a0001c0002a0002c0003others(1): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0006others(5): Show | a0001c0001t0001g0005 a0001c0001t0001g0020 a0001c0001t0001g0137 others(21): Show |
32 | 444 | 0.0721 | -10 | c.61- others(25): Show |
SPTY2D1 | ENSG00000179119.15 | transcript | ENST00000336349.6 | protein_coding | 1/5 | chr11 | TogoVar | |||||||
SQLE_chr8_124993505_125027283 | 125001480 | GTGTGTGT others(3): Show |
G | intron_variant | MODIFIER | NA19072.hp2 | a0001 | a0001c0001 | a0001c0001t0002 | a0001c0001t0002g0155 | 1 | 378 | 0.0027 | -10 | c.292 others(27): Show |
SQLE | ENSG00000104549.12 | transcript | ENST00000265896.10 | protein_coding | 1/10 | INFO_REALIGN_3_PRIME | chr8 | TogoVar | ||||||
SQOR_chr15_45630029_45696281 | 45633383 | AGAGTTAT others(3): Show |
A | upstream_gene_variant | MODIFIER | NA18942.hp2 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0254 | 1 | 340 | 0.0029 | -10 | c.-17 others(21): Show |
SQOR | ENSG00000137767.14 | transcript | ENST00000260324.12 | protein_coding | 1645 | chr15 | TogoVar | |||||||
SQOR_chr15_45630029_45696281 | 45634198 | CTATATAT others(3): Show |
C | upstream_gene_variant | MODIFIER | HG02109.hp2 HG02257.hp2 HG02280.hp2 others(4): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0003a0001c0001t0007a0002c0002t0001 | a0001c0001t0003g0314 a0001c0001t0003g0315 a0001c0001t0003g0317 others(4): Show |
7 | 340 | 0.0206 | -10 | c.-92 others(19): Show |
SQOR | ENSG00000137767.14 | transcript | ENST00000260324.12 | protein_coding | 830 | chr15 | TogoVar | |||||||
SQOR_chr15_45630029_45696281 | 45652638 | CTTTTTTT others(3): Show |
C | intron_variant | MODIFIER | HG03669.hp2 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0261 | 1 | 340 | 0.0029 | -10 | c.-17 others(27): Show |
SQOR | ENSG00000137767.14 | transcript | ENST00000260324.12 | protein_coding | 1/9 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | ||||||
SQOR_chr15_45630029_45696281 | 45666841 | CCTCCCCT others(3): Show |
C | intron_variant | MODIFIER | HG03669.hp2 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0261 | 1 | 340 | 0.0029 | -10 | c.406 others(27): Show |
SQOR | ENSG00000137767.14 | transcript | ENST00000260324.12 | protein_coding | 3/9 | INFO_REALIGN_3_PRIME | chr15 | TogoVar |