Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TSC22D3_chrX_107708221_107780787	107749178	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00642.hp1 HG01074.hp1 others(28): Show HG00280.hp1 HG00642.hp1 HG01074.hp1 HG01109.hp1 HG01433.hp1 HG01516.hp1 HG01517.hp2 HG01884.hp2 HG02027.hp1 HG02129.hp1 HG02257.hp1 HG02572.hp1 HG02630.hp1 HG02723.hp2 HG02735.hp1 HG02818.hp1 HG03041.hp2 HG03098.hp1 HG03195.hp1 HG03453.hp1 HG03492.hp1 NA18906.hp1 NA18955.hp1 NA18962.hp1 NA18971.hp1 NA18977.hp1 NA18994.hp1 NA19030.hp2 NA19091.hp1 NA19240.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0022 others(25): Show a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0022 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0064 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0078 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0103 a0001c0001t0001g0125 a0001c0001t0001g0160 a0001c0001t0002g0044 a0001c0001t0003g0101	31	44	0.7045	-10	c.320 others(29): Show c.320+25912_320+25921delGTGTGTGTGT	TSC22D3	ENSG00000157514.18	transcript	ENST00000372383.9	protein_coding	1/2			chrX	TogoVar
TSC22D3_chrX_107708221_107780787	107762846	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG03225.hp1 HG02647.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0067 a0001c0001t0002g0068	2	157	0.0127	-10	c.320 others(29): Show c.320+12244_320+12253delAAAAAAAAAA	TSC22D3	ENSG00000157514.18	transcript	ENST00000372383.9	protein_coding	1/2			chrX	TogoVar
TSC22D4_chr7_100461519_100484214	100478350	AGTGTGTG others(3): Show AGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02897.hp1 HG03834.hp1 others(1): Show HG02896.hp1 HG02897.hp1 HG03834.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0067 a0001c0001t0001g0080 a0001c0003t0001g0119 others(1): Show a0001c0001t0001g0067 a0001c0001t0001g0080 a0001c0003t0001g0119 a0001c0003t0001g0120	4	92	0.0435	-10	c.-26 others(25): Show c.-269-53_-269-44delACACACACAC	TSC22D4	ENSG00000166925.9	transcript	ENST00000300181.7	protein_coding	1/4			chr7	TogoVar
TSC2_chr16_2042985_2094491	2052255	GTTGTCTG others(3): Show GTTGTCTGAAT	G G	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00741.hp2 HG01074.hp1 others(20): Show HG00280.hp1 HG00741.hp2 HG01074.hp1 HG01081.hp1 HG01243.hp1 HG01433.hp2 HG01496.hp2 HG01943.hp1 HG02280.hp2 HG02451.hp2 HG02559.hp1 HG02630.hp2 HG02723.hp1 HG02895.hp1 HG02922.hp1 HG02965.hp2 HG03139.hp2 HG03225.hp1 HG03453.hp2 HG03471.hp1 NA19030.hp1 NA19043.hp2 NA21309.hp1	a0001 a0007 a0019 a0001 a0007 a0019	a0001c0001 a0001c0002 a0001c0004 others(7): Show a0001c0001 a0001c0002 a0001c0004 a0001c0007 a0001c0014 a0001c0019 a0001c0036 a0001c0046 a0007c0013 a0019c0028	a0001c0001t0002 a0001c0002t0002 a0001c0002t0005 others(10): Show a0001c0001t0002 a0001c0002t0002 a0001c0002t0005 a0001c0002t0006 a0001c0002t0018 a0001c0004t0005 a0001c0007t0002 a0001c0014t0009 a0001c0019t0002 a0001c0036t0006 a0001c0046t0006 a0007c0013t0010 a0019c0028t0010	a0001c0001t0002g0039 a0001c0001t0002g0046 a0001c0002t0002g0037 others(20): Show a0001c0001t0002g0039 a0001c0001t0002g0046 a0001c0002t0002g0037 a0001c0002t0002g0050 a0001c0002t0005g0049 a0001c0002t0006g0018 a0001c0002t0006g0036 a0001c0002t0006g0041 a0001c0002t0006g0044 a0001c0002t0006g0045 a0001c0002t0006g0047 a0001c0002t0018g0052 a0001c0004t0005g0139 a0001c0007t0002g0042 a0001c0007t0002g0043 a0001c0014t0009g0048 a0001c0019t0002g0038 a0001c0019t0002g0051 a0001c0036t0006g0006 a0001c0046t0006g0006 a0007c0013t0010g0136 a0007c0013t0010g0138 a0019c0028t0010g0137	23	316	0.0728	-10	c.226 others(27): Show c.226-1085_226-1076delTGTCTGAATT	TSC2	ENSG00000103197.19	transcript	ENST00000219476.9	protein_coding	3/41		INFO_REALIGN_3_PRIME	chr16	TogoVar
TSEN2_chr3_12479480_12538658	12516437	ACAAAATA others(3): Show ACAAAATATAT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01123.hp1 HG01256.hp2 others(11): Show HG00642.hp1 HG01123.hp1 HG01256.hp2 HG01258.hp2 HG01993.hp1 HG02015.hp1 HG02040.hp2 HG03490.hp1 HG03654.hp1 NA18954.hp1 NA18972.hp2 NA19003.hp1 NA19004.hp1 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0019 a0001c0001t0002 a0001c0001t0005 a0001c0001t0019	a0001c0001t0002g0007 a0001c0001t0002g0012 a0001c0001t0002g0053 others(8): Show a0001c0001t0002g0007 a0001c0001t0002g0012 a0001c0001t0002g0053 a0001c0001t0002g0054 a0001c0001t0002g0060 a0001c0001t0002g0074 a0001c0001t0002g0075 a0001c0001t0002g0128 a0001c0001t0002g0134 a0001c0001t0005g0131 a0001c0001t0019g0132	14	266	0.0526	-10	c.910 others(25): Show c.910-173_910-164delCAAAATATAT	TSEN2	ENSG00000154743.19	transcript	ENST00000284995.11	protein_coding	6/11			chr3	TogoVar
TSEN2_chr3_12479480_12538658	12516442	ATATATGT others(3): Show ATATATGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01175.hp1 HG02280.hp1 others(10): Show HG01081.hp1 HG01175.hp1 HG02280.hp1 HG02647.hp2 HG02717.hp2 HG02895.hp1 HG02897.hp2 HG03453.hp1 HG03486.hp1 HG03540.hp1 NA19009.hp1 NA19030.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 others(1): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0002c0003t0004	a0001c0001t0002g0066 a0001c0001t0002g0067 a0001c0001t0002g0081 others(9): Show a0001c0001t0002g0066 a0001c0001t0002g0067 a0001c0001t0002g0081 a0001c0001t0004g0048 a0001c0001t0005g0087 a0001c0001t0005g0109 a0002c0003t0004g0017 a0002c0003t0004g0138 a0002c0003t0004g0139 a0002c0003t0004g0140 a0002c0003t0004g0141 a0002c0003t0004g0142	13	239	0.0544	-10	c.910 others(25): Show c.910-167_910-158delATATGTGTGT	TSEN2	ENSG00000154743.19	transcript	ENST00000284995.11	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
TSEN2_chr3_12479480_12538658	12516444	ATATGTGT others(3): Show ATATGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0004 a0001c0007t0004	a0001c0007t0004g0050 a0001c0007t0004g0050	1	263	0.0038	-10	c.910 others(25): Show c.910-165_910-156delATGTGTGTGT	TSEN2	ENSG00000154743.19	transcript	ENST00000284995.11	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
TSEN2_chr3_12479480_12538658	12516446	ATGTGTGT others(3): Show ATGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00423.hp1 HG00639.hp2 others(16): Show HG00099.hp1 HG00423.hp1 HG00639.hp2 HG01099.hp2 HG01515.hp2 HG01517.hp1 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp2 HG02004.hp1 HG02273.hp2 HG02738.hp1 HG03834.hp1 HG03927.hp1 NA18981.hp1 NA19007.hp1 NA20300.hp1 NA20805.hp1	a0003 a0003	a0003c0002 a0003c0002	a0003c0002t0003 a0003c0002t0014 a0003c0002t0003 a0003c0002t0014	a0003c0002t0003g0006 a0003c0002t0003g0025 a0003c0002t0003g0213 others(12): Show a0003c0002t0003g0006 a0003c0002t0003g0025 a0003c0002t0003g0213 a0003c0002t0003g0214 a0003c0002t0003g0215 a0003c0002t0003g0217 a0003c0002t0003g0219 a0003c0002t0003g0220 a0003c0002t0003g0221 a0003c0002t0003g0222 a0003c0002t0003g0224 a0003c0002t0003g0225 a0003c0002t0003g0226 a0003c0002t0003g0227 a0003c0002t0014g0223	19	107	0.1776	-10	c.910 others(25): Show c.910-132_910-123delTGTGTGTGTG	TSEN2	ENSG00000154743.19	transcript	ENST00000284995.11	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
TSEN34_chr19_54186308_54199532	54194551	CACGTTTA others(3): Show CACGTTTATTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19006.hp2 NA19006.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0033 a0001c0001t0020g0033	1	430	0.0023	-10	c.11 others(21): Show c.1190_*1199delACGTTTATTT	TSEN34	ENSG00000170892.13	transcript	ENST00000396388.3	protein_coding		20		chr19	TogoVar
TSEN54_chr17_75511528_75529735	75517111	GCCCTCCC others(3): Show GCCCTCCCTGC	G G	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0006 a0006	a0006c0005 a0006c0005	a0006c0005t0001 a0006c0005t0001	a0006c0005t0001g0046 a0006c0005t0001g0046	1	421	0.0024	-10	c.285 others(23): Show c.285+42_286-38delCTCCCTGCCC	TSEN54	ENSG00000182173.14	transcript	ENST00000333213.11	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr17	TogoVar
TSFM_chr12_57777787_57802587	57784916	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0085 a0001c0001t0002g0085	1	128	0.0078	-10	c.232 others(27): Show c.232-1228_232-1219delTTTTTTTTTT	TSFM	ENSG00000123297.20	transcript	ENST00000652027.2	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr12	TogoVar
TSG101_chr11_18475311_18531942	18496442	AAAAATAA others(3): Show AAAAATAAAAT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00408.hp2 others(90): Show HG00140.hp2 HG00280.hp1 HG00408.hp2 HG00423.hp2 HG00558.hp2 HG00639.hp1 HG00673.hp1 HG00733.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp2 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01169.hp2 HG01243.hp1 HG01256.hp1 HG01257.hp1 HG01261.hp2 HG01496.hp2 HG01928.hp1 HG01978.hp2 HG01981.hp1 HG02027.hp1 HG02055.hp2 HG02145.hp2 HG02257.hp1 HG02273.hp1 HG02293.hp1 HG02300.hp2 HG02451.hp2 HG02486.hp1 HG02615.hp2 HG02622.hp1 HG02647.hp2 HG02683.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp2 HG02818.hp2 HG03195.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03471.hp2 HG03486.hp1 HG03540.hp1 HG03579.hp1 HG03669.hp1 HG03688.hp1 HG03834.hp1 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 NA18522.hp1 NA18522.hp2 NA18747.hp1 NA18939.hp2 NA18943.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp2 NA18963.hp1 NA18964.hp1 NA18970.hp2 NA18973.hp2 NA18980.hp2 NA18981.hp1 NA18983.hp1 NA18984.hp1 NA18987.hp2 NA18991.hp2 NA18994.hp2 NA19000.hp1 NA19006.hp2 NA19056.hp1 NA19060.hp2 NA19064.hp1 NA19078.hp1 NA19079.hp1 NA19084.hp1 NA19240.hp1 NA20129.hp1 NA20300.hp1 NA20805.hp2 NA21309.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0004 a0001c0001 a0001c0003 a0002c0004	a0001c0001t0001 a0001c0003t0001 a0002c0004t0001 a0001c0001t0001 a0001c0003t0001 a0002c0004t0001	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0010 others(84): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0016 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0065 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0240 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0259 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0001g0277 a0001c0001t0001g0279 a0001c0001t0001g0281 a0001c0001t0001g0282 a0001c0001t0001g0283 a0001c0001t0001g0284 a0001c0001t0001g0285 a0001c0001t0001g0286 a0001c0001t0001g0287 a0001c0001t0001g0288 a0001c0001t0001g0289 a0001c0001t0001g0290 a0001c0001t0001g0292 a0001c0001t0001g0293 a0001c0001t0001g0294 a0001c0001t0001g0296 a0001c0001t0001g0298 a0001c0001t0001g0300 a0001c0001t0001g0302 a0001c0001t0001g0303 a0001c0001t0001g0305 a0001c0001t0001g0306 a0001c0001t0001g0307 a0001c0001t0001g0308 a0001c0001t0001g0309 a0001c0001t0001g0310 a0001c0001t0001g0311 a0001c0001t0001g0313 a0001c0001t0001g0314 a0001c0001t0001g0315 a0001c0001t0001g0317 a0001c0001t0001g0318 a0001c0001t0001g0319 a0001c0001t0001g0322 a0001c0001t0001g0324 a0001c0001t0001g0327 a0001c0001t0001g0330 a0001c0001t0001g0331 a0001c0001t0001g0332 a0001c0001t0001g0333 a0001c0001t0001g0334 a0001c0001t0001g0336 a0001c0001t0001g0338 a0001c0001t0001g0339 a0001c0001t0001g0340 a0001c0001t0001g0341 a0001c0001t0001g0342 a0001c0001t0001g0343 a0001c0001t0001g0347 a0001c0001t0001g0354 a0001c0001t0001g0355 a0001c0001t0001g0356 a0001c0001t0001g0362 a0001c0001t0001g0364 a0001c0003t0001g0357 a0002c0004t0001g0102	93	272	0.3419	-10	c.640 others(27): Show c.640+6034_640+6043delATTTTATTTT	TSG101	ENSG00000074319.13	transcript	ENST00000251968.4	protein_coding	7/9			chr11	TogoVar
TSG101_chr11_18475311_18531942	18521359	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0100 a0001c0001t0001g0100	1	212	0.0047	-10	c.43- others(25): Show c.43-1766_43-1757delAAAAAAAAAA	TSG101	ENSG00000074319.13	transcript	ENST00000251968.4	protein_coding	1/9			chr11	TogoVar
TSG101_chr11_18475311_18531942	18528342	CATATATA others(3): Show CATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp1 HG03209.hp2 HG03579.hp1 others(2): Show HG02809.hp1 HG03209.hp2 HG03579.hp1 NA18954.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0281 a0001c0001t0001g0283 a0001c0001t0001g0302 others(2): Show a0001c0001t0001g0281 a0001c0001t0001g0283 a0001c0001t0001g0302 a0001c0001t0001g0368 a0001c0002t0001g0144	5	282	0.0177	-10	c.-15 others(21): Show c.-1536_-1527delATATATATAT	TSG101	ENSG00000074319.13	transcript	ENST00000251968.4	protein_coding		1401		chr11	TogoVar
TSG101_chr11_18475311_18531942	18528369	ATATATAT others(3): Show ATATATATATT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18963.hp2 NA19010.hp2 NA18963.hp2 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0099 a0001c0001t0001g0195 a0001c0001t0001g0099 a0001c0001t0001g0195	2	397	0.0050	-10	c.-15 others(21): Show c.-1563_-1554delAATATATATA	TSG101	ENSG00000074319.13	transcript	ENST00000251968.4	protein_coding		1428		chr11	TogoVar
TSGA10_chr2_98992261_99159942	99074000	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02717.hp2 HG02809.hp2 others(9): Show HG02630.hp1 HG02717.hp2 HG02809.hp2 HG02818.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02976.hp2 HG03471.hp1 HG03579.hp1 NA18522.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0009	a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 others(9): Show a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0003g0163 a0001c0001t0003g0204 a0001c0001t0003g0205 a0001c0001t0006g0151 a0001c0001t0006g0152 a0001c0001t0006g0155 a0001c0001t0006g0156 a0001c0001t0009g0001	12	119	0.1008	-10	c.883 others(25): Show c.883-937_883-928delAAAAAAAAAA	TSGA10	ENSG00000135951.16	transcript	ENST00000393483.8	protein_coding	12/20			chr2	TogoVar
TSGA10_chr2_98992261_99159942	99077127	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02809.hp2 HG02895.hp2 others(3): Show HG01243.hp2 HG02809.hp2 HG02895.hp2 HG02976.hp2 HG03579.hp1 NA19005.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0079 a0001c0001t0006g0151 a0001c0001t0006g0152 others(3): Show a0001c0001t0001g0079 a0001c0001t0006g0151 a0001c0001t0006g0152 a0001c0001t0006g0154 a0001c0001t0006g0155 a0001c0001t0006g0156	6	135	0.0444	-10	c.882 others(27): Show c.882+1522_882+1531delAAAAAAAAAA	TSGA10	ENSG00000135951.16	transcript	ENST00000393483.8	protein_coding	12/20			chr2	TogoVar
TSGA10_chr2_98992261_99159942	99098446	AAAAAAAA others(3): Show AAAAAAAAAAG	A A	intron_variant intron_variant	MODIFIER	HG01361.hp1 NA18940.hp2 HG01361.hp1 NA18940.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0030 a0001c0001t0001g0095 a0001c0001t0001g0030 a0001c0001t0001g0095	2	321	0.0062	-10	c.611 others(27): Show c.611+5511_611+5520delCTTTTTTTTT	TSGA10	ENSG00000135951.16	transcript	ENST00000393483.8	protein_coding	10/20			chr2	TogoVar
TSGA10_chr2_98992261_99159942	99136798	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0247 a0001c0001t0002g0247	1	208	0.0048	-10	c.-62 others(29): Show c.-620-9632_-620-9623delTTTTTTTTTT	TSGA10	ENSG00000135951.16	transcript	ENST00000393483.8	protein_coding	1/20			chr2	TogoVar
TSGA13_chr7_130663643_130691545	130671851	CTTTATTT others(3): Show CTTTATTTTAT	C C	intron_variant intron_variant	MODIFIER	HG02630.hp2 NA19030.hp2 HG02630.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0058 a0001c0001t0003g0096 a0001c0001t0002g0058 a0001c0001t0003g0096	2	144	0.0139	-10	c.531 others(23): Show c.531-73_531-64delATAAAATAAA	TSGA13	ENSG00000213265.9	transcript	ENST00000356588.8	protein_coding	6/7			chr7	TogoVar
TSGA13_chr7_130663643_130691545	130686693	TACACACA others(3): Show TACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00558.hp2 HG02040.hp1 HG02071.hp1 others(8): Show HG00558.hp2 HG02040.hp1 HG02071.hp1 HG02165.hp2 HG03516.hp2 HG04184.hp2 NA18522.hp2 NA18942.hp1 NA18967.hp2 NA19006.hp1 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0138 others(4): Show a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0138 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0150 a0001c0001t0001g0164	11	73	0.1507	-10	c.-59 others(19): Show c.-592_-583delGTGTGTGTGT	TSGA13	ENSG00000213265.9	transcript	ENST00000356588.8	protein_coding		149		chr7	TogoVar
TSHR_chr14_80950621_81151306	80973403	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG02615.hp2 NA21309.hp1 HG01346.hp1 HG02615.hp2 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0003 a0001c0001t0001 a0002c0003t0003	a0001c0001t0001g0072 a0001c0001t0001g0073 a0002c0003t0003g0241 a0001c0001t0001g0072 a0001c0001t0001g0073 a0002c0003t0003g0241	3	28	0.1071	-10	c.170 others(29): Show c.170+17570_170+17579delAAAAAAAAAA	TSHR	ENSG00000165409.18	transcript	ENST00000298171.7	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr14	TogoVar
TSHR_chr14_80950621_81151306	81005197	TTGTGTGT others(3): Show TTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG02615.hp2 HG01346.hp1 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0072 a0001c0001t0001g0073	2	12	0.1667	-10	c.170 others(29): Show c.170+49382_170+49391delTGTGTGTGTG	TSHR	ENSG00000165409.18	transcript	ENST00000298171.7	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr14	TogoVar
TSHR_chr14_80950621_81151306	81073021	AATATATA others(3): Show AATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02300.hp1 HG02300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0098 a0001c0001t0003g0098	1	195	0.0051	-10	c.317 others(27): Show c.317+4713_317+4722delTATATATATA	TSHR	ENSG00000165409.18	transcript	ENST00000298171.7	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr14	TogoVar
TSHR_chr14_80950621_81151306	81082646	CAAGAGTT others(3): Show CAAGAGTTAAA	C C	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02717.hp1 HG02723.hp1 others(11): Show HG01081.hp2 HG02717.hp1 HG02723.hp1 HG02809.hp2 HG02886.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp2 HG02970.hp1 HG03098.hp1 HG03516.hp2 NA18522.hp2 NA18906.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(5): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0009 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0020	a0001c0001t0001g0101 a0001c0001t0001g0104 a0001c0001t0001g0236 others(10): Show a0001c0001t0001g0101 a0001c0001t0001g0104 a0001c0001t0001g0236 a0001c0001t0003g0084 a0001c0001t0005g0001 a0001c0001t0005g0060 a0001c0001t0005g0135 a0001c0001t0005g0248 a0001c0001t0009g0244 a0001c0001t0013g0083 a0001c0001t0014g0003 a0001c0001t0016g0242 a0001c0001t0020g0173	14	268	0.0522	-10	c.318 others(27): Show c.318-5303_318-5294delGTTAAAAAGA	TSHR	ENSG00000165409.18	transcript	ENST00000298171.7	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr14	TogoVar
TSHR_chr14_80950621_81151306	81109175	CGAGGCGG others(3): Show CGAGGCGGGCA	C C	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0015 a0001c0002t0015	a0001c0002t0015g0077 a0001c0002t0015g0077	1	268	0.0037	-10	c.692 others(25): Show c.692+726_692+735delGGCGGGCAGA	TSHR	ENSG00000165409.18	transcript	ENST00000298171.7	protein_coding	8/9		INFO_REALIGN_3_PRIME	chr14	TogoVar
TSHR_chr14_80950621_81151306	81122020	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02027.hp1 HG01109.hp2 HG02027.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0005 a0001c0002 a0002c0005	a0001c0002t0006 a0002c0005t0003 a0001c0002t0006 a0002c0005t0003	a0001c0002t0006g0009 a0002c0005t0003g0125 a0001c0002t0006g0009 a0002c0005t0003g0125	2	13	0.1538	-10	c.692 others(29): Show c.692+13600_692+13609delTTTTTTTTTT	TSHR	ENSG00000165409.18	transcript	ENST00000298171.7	protein_coding	8/9		INFO_REALIGN_3_PRIME	chr14	TogoVar
TSHZ1_chr18_75205797_75294944	75246403	GGTGTGTG others(3): Show GGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG03486.hp2 HG02922.hp2 HG03486.hp2	a0001 a0001	a0001c0019 a0001c0031 a0001c0019 a0001c0031	a0001c0019t0001 a0001c0031t0009 a0001c0019t0001 a0001c0031t0009	a0001c0019t0001g0225 a0001c0031t0009g0066 a0001c0019t0001g0225 a0001c0031t0009g0066	2	9	0.2222	-10	c.40+ others(27): Show c.40+34520_40+34529delGTGTGTGTGT	TSHZ1	ENSG00000179981.11	transcript	ENST00000580243.3	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr18	TogoVar
TSHZ2_chr20_52967358_53500330	52977421	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02300.hp2 NA19240.hp1 HG02300.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0002 a0001c0001t0006	a0001c0001t0002g0089 a0001c0001t0006g0088 a0001c0001t0002g0089 a0001c0001t0006g0088	2	9	0.2222	-10	c.40+ others(25): Show c.40+4127_40+4136delACACACACAC	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	52987462	CTCTCTCT others(3): Show CTCTCTCTCTT	C C	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0008 a0008	a0008c0015 a0008c0015	a0008c0015t0073 a0008c0015t0073	a0008c0015t0073g0097 a0008c0015t0073g0097	1	174	0.0057	-10	c.40+ others(27): Show c.40+14138_40+14147delTTTCTCTCTC	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53008980	CCTCTCTC others(3): Show CCTCTCTCTCT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00438.hp1 HG00673.hp2 others(13): Show HG00099.hp2 HG00438.hp1 HG00673.hp2 HG01109.hp1 HG01192.hp1 HG01496.hp2 HG02015.hp1 HG02257.hp2 HG02300.hp1 HG03704.hp2 NA18959.hp2 NA18969.hp1 NA19056.hp2 NA19057.hp1 NA19074.hp1 NA20905.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0005 a0001c0001 a0001c0002 a0003c0005	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(11): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0001t0014 a0001c0001t0020 a0001c0001t0051 a0001c0001t0053 a0001c0002t0002 a0001c0002t0006 a0001c0002t0089 a0003c0005t0003 a0003c0005t0056	a0001c0001t0002g0057 a0001c0001t0003g0128 a0001c0001t0004g0043 others(13): Show a0001c0001t0002g0057 a0001c0001t0003g0128 a0001c0001t0004g0043 a0001c0001t0004g0110 a0001c0001t0004g0129 a0001c0001t0005g0130 a0001c0001t0009g0131 a0001c0001t0014g0009 a0001c0001t0020g0132 a0001c0001t0051g0026 a0001c0001t0053g0023 a0001c0002t0002g0063 a0001c0002t0006g0122 a0001c0002t0089g0165 a0003c0005t0003g0091 a0003c0005t0056g0025	16	39	0.4103	-10	c.40+ others(27): Show c.40+35689_40+35698delTCTCTCTCTC	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53038192	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02630.hp1 HG02647.hp1 others(5): Show HG02572.hp1 HG02630.hp1 HG02647.hp1 HG02818.hp1 HG02897.hp2 HG03486.hp1 NA18989.hp1 NA18989.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0009 others(1): Show a0001c0001 a0001c0002 a0001c0009 a0002c0003	a0001c0001t0017 a0001c0001t0020 a0001c0001t0022 others(5): Show a0001c0001t0017 a0001c0001t0020 a0001c0001t0022 a0001c0001t0024 a0001c0002t0008 a0001c0009t0030 a0002c0003t0010 a0002c0003t0082	a0001c0001t0017g0083 a0001c0001t0020g0163 a0001c0001t0022g0079 others(5): Show a0001c0001t0017g0083 a0001c0001t0020g0163 a0001c0001t0022g0079 a0001c0001t0024g0137 a0001c0002t0008g0140 a0001c0009t0030g0136 a0002c0003t0010g0078 a0002c0003t0082g0047	8	12	0.6667	-10	c.40+ others(27): Show c.40+64891_40+64900delAAAAAAAAAA	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53039781	AACACACA others(3): Show AACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0085 a0002c0003t0085	a0002c0003t0085g0066 a0002c0003t0085g0066	1	70	0.0143	-10	c.40+ others(27): Show c.40+66473_40+66482delACACACACAC	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53051457	GCACACAC others(3): Show GCACACACACA	G G	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02040.hp2 HG02055.hp2 others(14): Show HG01891.hp1 HG02040.hp2 HG02055.hp2 HG02647.hp1 HG02647.hp2 HG02723.hp2 HG02897.hp2 HG02922.hp2 HG03041.hp2 HG03098.hp1 HG03471.hp2 HG03486.hp1 HG03688.hp1 NA18954.hp2 NA18959.hp2 NA18968.hp1 NA18969.hp1	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0006 a0007 a0009	a0001c0001 a0002c0003 a0003c0006 others(4): Show a0001c0001 a0002c0003 a0003c0006 a0004c0004 a0006c0010 a0007c0008 a0009c0014	a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 others(12): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0017 a0001c0001t0022 a0001c0001t0032 a0001c0001t0043 a0002c0003t0005 a0002c0003t0058 a0002c0003t0082 a0003c0006t0015 a0004c0004t0005 a0006c0010t0018 a0007c0008t0061 a0009c0014t0077	a0001c0001t0002g0141 a0001c0001t0004g0113 a0001c0001t0004g0129 others(14): Show a0001c0001t0002g0141 a0001c0001t0004g0113 a0001c0001t0004g0129 a0001c0001t0005g0018 a0001c0001t0005g0130 a0001c0001t0017g0083 a0001c0001t0022g0079 a0001c0001t0032g0134 a0001c0001t0043g0169 a0002c0003t0005g0019 a0002c0003t0058g0006 a0002c0003t0082g0047 a0003c0006t0015g0008 a0004c0004t0005g0024 a0006c0010t0018g0144 a0007c0008t0061g0044 a0009c0014t0077g0067	17	41	0.4146	-10	c.40+ others(27): Show c.40+78153_40+78162delCACACACACA	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53069662	TACACACA others(3): Show TACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01192.hp2 HG01496.hp1 others(28): Show HG00438.hp1 HG01192.hp2 HG01496.hp1 HG02055.hp1 HG02055.hp2 HG02109.hp1 HG02109.hp2 HG02257.hp2 HG02523.hp2 HG02572.hp2 HG02602.hp1 HG02622.hp2 HG02630.hp1 HG02683.hp1 HG02683.hp2 HG02886.hp1 HG02897.hp1 HG02922.hp1 HG02976.hp1 HG03017.hp2 HG03098.hp2 HG03195.hp2 HG04204.hp1 HG04204.hp2 NA18995.hp2 NA19043.hp1 NA19074.hp2 NA19077.hp1 NA19085.hp2 NA19090.hp1 NA19240.hp2	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0006	a0001c0001 a0001c0002 a0002c0003 others(2): Show a0001c0001 a0001c0002 a0002c0003 a0004c0004 a0006c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(22): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 a0001c0001t0016 a0001c0001t0032 a0001c0001t0037 a0001c0001t0065 a0001c0001t0069 a0001c0001t0081 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0006 a0002c0003t0006 a0002c0003t0010 a0002c0003t0038 a0002c0003t0044 a0002c0003t0048 a0004c0004t0055 a0006c0010t0033	a0001c0001t0001g0058 a0001c0001t0001g0108 a0001c0001t0001g0148 others(28): Show a0001c0001t0001g0058 a0001c0001t0001g0108 a0001c0001t0001g0148 a0001c0001t0001g0160 a0001c0001t0002g0115 a0001c0001t0002g0170 a0001c0001t0003g0054 a0001c0001t0003g0128 a0001c0001t0007g0046 a0001c0001t0009g0124 a0001c0001t0011g0146 a0001c0001t0012g0048 a0001c0001t0014g0004 a0001c0001t0016g0015 a0001c0001t0032g0134 a0001c0001t0037g0030 a0001c0001t0065g0065 a0001c0001t0069g0098 a0001c0001t0081g0027 a0001c0002t0001g0133 a0001c0002t0002g0063 a0001c0002t0003g0061 a0001c0002t0006g0114 a0002c0003t0006g0143 a0002c0003t0010g0078 a0002c0003t0010g0099 a0002c0003t0038g0031 a0002c0003t0044g0101 a0002c0003t0048g0002 a0004c0004t0055g0003 a0006c0010t0033g0138	31	34	0.9118	-10	c.40+ others(27): Show c.40+96368_40+96377delACACACACAC	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53102475	AGAGGGGA others(3): Show AGAGGGGAGAG	A A	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG02451.hp2 HG03453.hp2 HG00741.hp1 HG02451.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0019 a0001c0001t0075 a0001c0001t0010 a0001c0001t0019 a0001c0001t0075	a0001c0001t0010g0151 a0001c0001t0019g0147 a0001c0001t0075g0068 a0001c0001t0010g0151 a0001c0001t0019g0147 a0001c0001t0075g0068	3	174	0.0172	-10	c.40+ others(29): Show c.40+129155_40+129164delGGGGAGAGGA	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53128106	GATACTAA others(3): Show GATACTAAAGA	G G	intron_variant intron_variant	MODIFIER	HG02647.hp2 NA18906.hp1 NA19030.hp1 others(1): Show HG02647.hp2 NA18906.hp1 NA19030.hp1 NA19240.hp1	a0001 a0009 a0001 a0009	a0001c0001 a0001c0011 a0009c0014 a0001c0001 a0001c0011 a0009c0014	a0001c0001t0006 a0001c0001t0052 a0001c0011t0079 others(1): Show a0001c0001t0006 a0001c0001t0052 a0001c0011t0079 a0009c0014t0077	a0001c0001t0006g0088 a0001c0001t0052g0007 a0001c0011t0079g0032 others(1): Show a0001c0001t0006g0088 a0001c0001t0052g0007 a0001c0011t0079g0032 a0009c0014t0077g0067	4	174	0.0230	-10	c.41- others(29): Show c.41-125391_41-125382delTACTAAAGAA	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53135007	GACACACA others(3): Show GACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02897.hp1 HG02886.hp2 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0037 a0001c0009t0036 a0001c0001t0037 a0001c0009t0036	a0001c0001t0037g0030 a0001c0009t0036g0029 a0001c0001t0037g0030 a0001c0009t0036g0029	2	8	0.2500	-10	c.41- others(29): Show c.41-118472_41-118463delCACACACACA	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53190086	AATATATA others(3): Show AATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01928.hp1 HG03041.hp2 HG01928.hp1 HG03041.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0004c0004t0005 a0001c0001t0001 a0004c0004t0005	a0001c0001t0001g0035 a0004c0004t0005g0024 a0001c0001t0001g0035 a0004c0004t0005g0024	2	34	0.0588	-10	c.41- others(27): Show c.41-63370_41-63361delATATATATAT	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53190129	ATATATAT others(3): Show ATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG02040.hp1 NA18940.hp2 NA18948.hp1 others(3): Show HG02040.hp1 NA18940.hp2 NA18948.hp1 NA19000.hp2 NA19063.hp2 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0007 a0001c0001t0023 others(3): Show a0001c0001t0002 a0001c0001t0007 a0001c0001t0023 a0001c0001t0078 a0001c0002t0002 a0001c0002t0003	a0001c0001t0002g0115 a0001c0001t0007g0167 a0001c0001t0023g0104 others(3): Show a0001c0001t0002g0115 a0001c0001t0007g0167 a0001c0001t0023g0104 a0001c0001t0078g0085 a0001c0002t0002g0121 a0001c0002t0003g0036	6	173	0.0347	-10	c.41- others(27): Show c.41-63368_41-63359delATATATATTT	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53209893	ATTCTTCC others(3): Show ATTCTTCCCTG	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00544.hp1 HG00544.hp2 others(22): Show HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00621.hp2 HG00673.hp2 HG02040.hp2 HG02056.hp1 HG02523.hp1 HG03017.hp1 HG04115.hp1 HG04199.hp2 HG04204.hp2 NA18940.hp2 NA18948.hp1 NA18957.hp1 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18983.hp1 NA18999.hp1 NA19000.hp1 NA19000.hp2 NA19074.hp2 NA19085.hp2 NA20300.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0001c0013 others(1): Show a0001c0001 a0001c0002 a0001c0013 a0007c0008	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0016 a0001c0001t0023 a0001c0001t0042 a0001c0001t0049 a0001c0001t0051 a0001c0001t0060 a0001c0001t0076 a0001c0001t0078 a0001c0001t0084 a0001c0002t0063 a0001c0013t0008 a0007c0008t0066	a0001c0001t0001g0058 a0001c0001t0001g0160 a0001c0001t0002g0117 others(22): Show a0001c0001t0001g0058 a0001c0001t0001g0160 a0001c0001t0002g0117 a0001c0001t0002g0141 a0001c0001t0004g0113 a0001c0001t0004g0119 a0001c0001t0004g0129 a0001c0001t0007g0060 a0001c0001t0007g0123 a0001c0001t0007g0167 a0001c0001t0008g0082 a0001c0001t0009g0166 a0001c0001t0016g0015 a0001c0001t0023g0104 a0001c0001t0023g0116 a0001c0001t0042g0076 a0001c0001t0049g0011 a0001c0001t0051g0026 a0001c0001t0060g0022 a0001c0001t0076g0155 a0001c0001t0078g0085 a0001c0001t0084g0073 a0001c0002t0063g0120 a0001c0013t0008g0161 a0007c0008t0066g0109	25	174	0.1437	-10	c.41- others(27): Show c.41-43598_41-43589delCTGTTCTTCC	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53226119	AACACACA others(3): Show AACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02886.hp2 HG03471.hp1 others(1): Show HG02818.hp1 HG02886.hp2 HG03471.hp1 HG03486.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0009 a0004c0004 a0001c0001 a0001c0009 a0004c0004	a0001c0001t0001 a0001c0009t0030 a0001c0009t0036 others(1): Show a0001c0001t0001 a0001c0009t0030 a0001c0009t0036 a0004c0004t0034	a0001c0001t0001g0093 a0001c0009t0030g0136 a0001c0009t0036g0029 others(1): Show a0001c0001t0001g0093 a0001c0009t0030g0136 a0001c0009t0036g0029 a0004c0004t0034g0173	4	34	0.1176	-10	c.41- others(27): Show c.41-27348_41-27339delCACACACACA	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53226151	CACACACA others(3): Show CACACACACAT	C C	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0006 a0006	a0006c0010 a0006c0010	a0006c0010t0033 a0006c0010t0033	a0006c0010t0033g0138 a0006c0010t0033g0138	1	174	0.0057	-10	c.41- others(27): Show c.41-27347_41-27338delACACACACAT	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	1/2			chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53441221	GTTTATTT others(3): Show GTTTATTTTAT	G G	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00438.hp1 HG00544.hp2 others(33): Show HG00099.hp2 HG00438.hp1 HG00544.hp2 HG00673.hp2 HG00741.hp2 HG01099.hp1 HG01168.hp1 HG01255.hp1 HG01358.hp1 HG01358.hp2 HG01496.hp1 HG02015.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02258.hp2 HG02300.hp1 HG02523.hp2 HG02647.hp1 HG02723.hp1 HG02738.hp2 HG02818.hp1 HG02897.hp2 HG02922.hp1 HG03098.hp1 HG03453.hp2 HG03486.hp2 HG03579.hp1 HG03579.hp2 HG03704.hp1 NA18906.hp2 NA18948.hp2 NA18959.hp1 NA19000.hp1 NA19077.hp1 NA19240.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	a0001c0001 a0001c0002 a0001c0009 others(6): Show a0001c0001 a0001c0002 a0001c0009 a0001c0016 a0001c0017 a0002c0003 a0003c0005 a0004c0004 a0006c0010	a0001c0001t0003 a0001c0001t0006 a0001c0001t0009 others(24): Show a0001c0001t0003 a0001c0001t0006 a0001c0001t0009 a0001c0001t0011 a0001c0001t0017 a0001c0001t0026 a0001c0001t0042 a0001c0001t0051 a0001c0001t0062 a0001c0001t0068 a0001c0001t0070 a0001c0001t0075 a0001c0001t0087 a0001c0002t0003 a0001c0002t0006 a0001c0002t0057 a0001c0002t0063 a0001c0009t0030 a0001c0016t0025 a0001c0017t0006 a0002c0003t0006 a0002c0003t0017 a0002c0003t0082 a0003c0005t0003 a0004c0004t0034 a0004c0004t0055 a0006c0010t0018	a0001c0001t0003g0090 a0001c0001t0003g0128 a0001c0001t0006g0087 others(33): Show a0001c0001t0003g0090 a0001c0001t0003g0128 a0001c0001t0006g0087 a0001c0001t0009g0124 a0001c0001t0009g0131 a0001c0001t0009g0157 a0001c0001t0009g0166 a0001c0001t0011g0100 a0001c0001t0011g0146 a0001c0001t0017g0083 a0001c0001t0026g0072 a0001c0001t0042g0076 a0001c0001t0051g0026 a0001c0001t0062g0172 a0001c0001t0068g0080 a0001c0001t0070g0142 a0001c0001t0075g0068 a0001c0001t0087g0156 a0001c0002t0003g0036 a0001c0002t0003g0061 a0001c0002t0003g0084 a0001c0002t0006g0114 a0001c0002t0006g0122 a0001c0002t0057g0016 a0001c0002t0063g0120 a0001c0009t0030g0136 a0001c0016t0025g0135 a0001c0017t0006g0164 a0002c0003t0006g0143 a0002c0003t0017g0150 a0002c0003t0082g0047 a0003c0005t0003g0001 a0003c0005t0003g0091 a0004c0004t0034g0173 a0004c0004t0055g0003 a0006c0010t0018g0144	36	61	0.5902	-10	c.9- others(27): Show c.9-45875_*9-45866delTATTTTATTT	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53469045	TTATATAT others(3): Show TTATATATATA	T T	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02630.hp1 HG03098.hp2 HG01891.hp2 HG02630.hp1 HG03098.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0010 a0002c0003t0085 a0002c0003t0010 a0002c0003t0085	a0002c0003t0010g0078 a0002c0003t0010g0099 a0002c0003t0085g0066 a0002c0003t0010g0078 a0002c0003t0010g0099 a0002c0003t0085g0066	3	20	0.1500	-10	c.9- others(27): Show c.9-18069_*9-18060delATATATATAT	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53469693	CAAGAAAG others(3): Show CAAGAAAGATA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02451.hp2 HG02647.hp2 others(3): Show HG01891.hp1 HG02451.hp2 HG02647.hp2 HG02809.hp2 HG02897.hp1 HG03041.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0009	a0001c0001 a0002c0003 a0003c0006 others(1): Show a0001c0001 a0002c0003 a0003c0006 a0009c0014	a0001c0001t0010 a0001c0001t0037 a0002c0003t0027 others(2): Show a0001c0001t0010 a0001c0001t0037 a0002c0003t0027 a0003c0006t0015 a0009c0014t0077	a0001c0001t0010g0151 a0001c0001t0037g0030 a0002c0003t0027g0139 others(3): Show a0001c0001t0010g0151 a0001c0001t0037g0030 a0002c0003t0027g0139 a0003c0006t0015g0008 a0003c0006t0015g0020 a0009c0014t0077g0067	6	174	0.0345	-10	c.9- others(27): Show c.9-17450_*9-17441delAAGAAAGATA	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	2/2			chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53482108	TAAAAAAA others(3): Show TAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG04199.hp2 HG04199.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0049 a0001c0001t0049	a0001c0001t0049g0011 a0001c0001t0049g0011	1	23	0.0435	-10	c.9- others(25): Show c.9-5019_*9-5010delAAAAAAAAAA	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ2_chr20_52967358_53500330	53484382	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00544.hp1 HG02040.hp2 others(19): Show HG00438.hp2 HG00544.hp1 HG02040.hp2 HG02257.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02818.hp2 HG02970.hp2 HG03688.hp2 HG03704.hp2 HG04184.hp2 HG04199.hp1 NA18948.hp1 NA18969.hp1 NA18989.hp2 NA18999.hp1 NA19057.hp1 NA19085.hp2 NA20805.hp2 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0011 others(3): Show a0001c0001 a0001c0002 a0001c0011 a0001c0012 a0001c0013 a0002c0003	a0001c0001t0004 a0001c0001t0008 a0001c0001t0016 others(10): Show a0001c0001t0004 a0001c0001t0008 a0001c0001t0016 a0001c0001t0017 a0001c0001t0046 a0001c0001t0078 a0001c0002t0008 a0001c0002t0089 a0001c0011t0035 a0001c0012t0008 a0001c0013t0008 a0002c0003t0017 a0002c0003t0058	a0001c0001t0004g0041 a0001c0001t0004g0043 a0001c0001t0004g0070 others(19): Show a0001c0001t0004g0041 a0001c0001t0004g0043 a0001c0001t0004g0070 a0001c0001t0004g0071 a0001c0001t0004g0075 a0001c0001t0004g0110 a0001c0001t0004g0113 a0001c0001t0004g0119 a0001c0001t0004g0129 a0001c0001t0008g0082 a0001c0001t0016g0010 a0001c0001t0016g0015 a0001c0001t0017g0083 a0001c0001t0046g0059 a0001c0001t0078g0085 a0001c0002t0008g0140 a0001c0002t0089g0165 a0001c0011t0035g0174 a0001c0012t0008g0096 a0001c0013t0008g0161 a0002c0003t0017g0150 a0002c0003t0058g0006	22	137	0.1606	-10	c.9- others(25): Show c.9-2750_*9-2741delTTTTTTTTTT	TSHZ2	ENSG00000182463.17	transcript	ENST00000371497.10	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr20	TogoVar
TSHZ3_chr19_31269945_31354436	31323863	AACACACA others(3): Show AACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG02280.hp2 HG02486.hp1 others(6): Show HG01123.hp2 HG02280.hp2 HG02486.hp1 HG02559.hp1 HG03139.hp2 HG03942.hp1 NA18949.hp2 NA20129.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 others(3): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005 a0001c0007 a0001c0008	a0001c0001t0002 a0001c0003t0001 a0001c0003t0002 others(4): Show a0001c0001t0002 a0001c0003t0001 a0001c0003t0002 a0001c0004t0001 a0001c0005t0001 a0001c0007t0001 a0001c0008t0001	a0001c0001t0002g0184 a0001c0003t0001g0224 a0001c0003t0002g0010 others(6): Show a0001c0001t0002g0184 a0001c0003t0001g0224 a0001c0003t0002g0010 a0001c0003t0002g0198 a0001c0003t0002g0230 a0001c0004t0001g0175 a0001c0005t0001g0132 a0001c0007t0001g0201 a0001c0008t0001g0255	9	48	0.1875	-10	c.40+ others(27): Show c.40+25307_40+25316delGTGTGTGTGT	TSHZ3	ENSG00000121297.8	transcript	ENST00000240587.5	protein_coding	1/1			chr19	TogoVar
TSHZ3_chr19_31269945_31354436	31341630	GACACACA others(3): Show GACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG02258.hp2 HG02280.hp1 others(3): Show HG00738.hp1 HG02258.hp2 HG02280.hp1 HG03209.hp1 NA19043.hp2 NA20300.hp2	a0001 a0001	a0001c0003 a0001c0024 a0001c0027 a0001c0003 a0001c0024 a0001c0027	a0001c0003t0001 a0001c0003t0003 a0001c0024t0001 others(1): Show a0001c0003t0001 a0001c0003t0003 a0001c0024t0001 a0001c0027t0001	a0001c0003t0001g0217 a0001c0003t0001g0277 a0001c0003t0003g0216 others(3): Show a0001c0003t0001g0217 a0001c0003t0001g0277 a0001c0003t0003g0216 a0001c0003t0003g0218 a0001c0024t0001g0211 a0001c0027t0001g0159	6	70	0.0857	-10	c.40+ others(25): Show c.40+7540_40+7549delGTGTGTGTGT	TSHZ3	ENSG00000121297.8	transcript	ENST00000240587.5	protein_coding	1/1			chr19	TogoVar

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