Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
PCDHA12_chr5_140870308_141017347	140993462	TCACACAC others(5): Show TCACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01934.hp1 HG03225.hp2 others(2): Show HG01071.hp1 HG01934.hp1 HG03225.hp2 NA19057.hp1 NA19240.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0020 a0002c0003 a0003c0006 others(1): Show a0001c0020 a0002c0003 a0003c0006 a0003c0013	a0001c0020t0006 a0002c0003t0001 a0003c0006t0006 others(1): Show a0001c0020t0006 a0002c0003t0001 a0003c0006t0006 a0003c0013t0006	a0001c0020t0006g0028 a0002c0003t0001g0163 a0003c0006t0006g0087 others(2): Show a0001c0020t0006g0028 a0002c0003t0001g0163 a0003c0006t0006g0087 a0003c0006t0006g0089 a0003c0013t0006g0088	5	260	0.0192	-12	c.251 others(33): Show c.2515+10935_2515+10946delACACACACACAC	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	141000385	CTCTCTCT others(5): Show CTCTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0024	1	260	0.0039	-12	c.251 others(31): Show c.2516-9240_2516-9229delCTCTCTCTCTAT	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	141001822	TGACAGAG others(5): Show TGACAGAGAGGGA	T T	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0002 a0001c0004t0002	a0001c0004t0002g0120 a0001c0004t0002g0120	1	260	0.0039	-12	c.251 others(31): Show c.2516-7795_2516-7784delGGAGACAGAGAG	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	141005701	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0002 a0001c0004t0002	a0001c0004t0002g0120 a0001c0004t0002g0120	1	260	0.0039	-12	c.251 others(31): Show c.2516-3907_2516-3896delAAAAAAAAAAAA	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140941191	TTTTCTTT others(5): Show TTTTCTTTCTTCC	T T	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01346.hp1 HG01934.hp1 others(7): Show HG01192.hp2 HG01346.hp1 HG01934.hp1 HG01978.hp1 HG01993.hp2 HG02293.hp1 HG02486.hp2 HG02738.hp2 HG03834.hp2 NA19005.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0001c0021	a0001c0001t0001 a0001c0002t0001 a0001c0002t0007 others(3): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0007 a0001c0003t0001 a0001c0006t0001 a0001c0021t0001	a0001c0001t0001g0194 a0001c0002t0001g0057 a0001c0002t0007g0025 others(7): Show a0001c0001t0001g0194 a0001c0002t0001g0057 a0001c0002t0007g0025 a0001c0003t0001g0123 a0001c0003t0001g0125 a0001c0003t0001g0126 a0001c0003t0001g0128 a0001c0003t0001g0256 a0001c0006t0001g0005 a0001c0021t0001g0124	10	260	0.0385	-12	c.239 others(33): Show c.2395-37735_2395-37724delCCTTTCTTTCTT	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140981687	ATCATTCA others(5): Show ATCATTCATTCAT	A A	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG02155.hp2 NA18966.hp2 others(4): Show HG01106.hp1 HG02155.hp2 NA18966.hp2 NA18975.hp2 NA19000.hp1 NA19087.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0109 a0001c0001t0001g0163 a0001c0001t0001g0220 others(4): Show a0001c0001t0001g0109 a0001c0001t0001g0163 a0001c0001t0001g0220 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0247 a0001c0003t0001g0135	7	260	0.0269	-12	c.245 others(29): Show c.2454-771_2454-760delTCATTCATTCAT	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	2/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140993462	TCACACAC others(5): Show TCACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01934.hp1 HG03225.hp2 others(2): Show HG01071.hp1 HG01934.hp1 HG03225.hp2 NA19057.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0007 a0001c0001t0001 a0001c0002t0007	a0001c0001t0001g0175 a0001c0002t0007g0025 a0001c0002t0007g0095 others(2): Show a0001c0001t0001g0175 a0001c0002t0007g0025 a0001c0002t0007g0095 a0001c0002t0007g0097 a0001c0002t0007g0098	5	260	0.0192	-12	c.254 others(33): Show c.2542+10935_2542+10946delACACACACACAC	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	141000385	CTCTCTCT others(5): Show CTCTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0020 a0001c0002t0001g0020	1	260	0.0039	-12	c.254 others(31): Show c.2543-9240_2543-9229delCTCTCTCTCTAT	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	141001822	TGACAGAG others(5): Show TGACAGAGAGGGA	T T	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0003 a0001c0001t0002g0003	1	260	0.0039	-12	c.254 others(31): Show c.2543-7795_2543-7784delGGAGACAGAGAG	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	141005701	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0003 a0001c0001t0002g0003	1	260	0.0039	-12	c.254 others(31): Show c.2543-3907_2543-3896delAAAAAAAAAAAA	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140838075	ATAGTGTG others(5): Show ATAGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01167.hp2 HG01978.hp2 others(4): Show HG01099.hp1 HG01167.hp2 HG01978.hp2 HG02258.hp1 HG03209.hp1 HG04228.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0011 a0001c0001t0001 a0001c0001t0011	a0001c0001t0001g0044 a0001c0001t0001g0049 a0001c0001t0001g0058 others(4): Show a0001c0001t0001g0044 a0001c0001t0001g0049 a0001c0001t0001g0058 a0001c0001t0001g0074 a0001c0001t0001g0091 a0001c0001t0011g0088 a0001c0001t0011g0090	7	200	0.0350	-12	c.239 others(33): Show c.2394+49392_2394+49403delTAGTGTGTGTGT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140838077	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00423.hp2 NA18949.hp2 HG00423.hp2 NA18949.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0004 a0002c0002t0001 a0002c0002t0004	a0002c0002t0001g0151 a0002c0002t0004g0121 a0002c0002t0001g0151 a0002c0002t0004g0121	2	200	0.0100	-12	c.239 others(33): Show c.2394+49436_2394+49447delGTGTGTGTGTGT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140941191	TTTTCTTT others(5): Show TTTTCTTTCTTCC	T T	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01934.hp2 HG01978.hp1 others(5): Show HG01346.hp1 HG01934.hp2 HG01978.hp1 HG01993.hp1 HG02293.hp2 HG02486.hp2 HG02738.hp1 NA19005.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0005 a0002c0002t0001 a0001c0001t0001 a0001c0001t0005 a0002c0002t0001	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0066 others(5): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0066 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0081 a0001c0001t0005g0015 a0002c0002t0001g0172	8	200	0.0400	-12	c.239 others(33): Show c.2395-37735_2395-37724delCCTTTCTTTCTT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140981687	ATCATTCA others(5): Show ATCATTCATTCAT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01106.hp2 HG02155.hp1 others(5): Show HG00621.hp1 HG01106.hp2 HG02155.hp1 NA18966.hp2 NA18975.hp1 NA19000.hp1 NA19087.hp1 NA19091.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0017 a0002c0002 a0001c0001 a0001c0017 a0002c0002	a0001c0001t0001 a0001c0017t0001 a0002c0002t0001 a0001c0001t0001 a0001c0017t0001 a0002c0002t0001	a0001c0001t0001g0007 a0001c0001t0001g0045 a0001c0001t0001g0051 others(5): Show a0001c0001t0001g0007 a0001c0001t0001g0045 a0001c0001t0001g0051 a0001c0001t0001g0064 a0001c0017t0001g0014 a0002c0002t0001g0104 a0002c0002t0001g0140 a0002c0002t0001g0152	8	200	0.0400	-12	c.245 others(29): Show c.2454-771_2454-760delTCATTCATTCAT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	2/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140993462	TCACACAC others(5): Show TCACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01934.hp2 HG03225.hp1 others(1): Show HG01071.hp2 HG01934.hp2 HG03225.hp1 NA19240.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0005 a0002c0002t0005 a0001c0001t0005 a0002c0002t0005	a0001c0001t0005g0015 a0002c0002t0005g0196 a0002c0002t0005g0197 others(1): Show a0001c0001t0005g0015 a0002c0002t0005g0196 a0002c0002t0005g0197 a0002c0002t0005g0200	4	200	0.0200	-12	c.254 others(33): Show c.2542+10935_2542+10946delACACACACACAC	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	141000385	CTCTCTCT others(5): Show CTCTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0062	1	200	0.0050	-12	c.254 others(31): Show c.2543-9240_2543-9229delCTCTCTCTCTAT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	141001822	TGACAGAG others(5): Show TGACAGAGAGGGA	T T	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0194 a0003c0003t0002g0194	1	200	0.0050	-12	c.254 others(31): Show c.2543-7795_2543-7784delGGAGACAGAGAG	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	141005701	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0194 a0003c0003t0002g0194	1	200	0.0050	-12	c.254 others(31): Show c.2543-3907_2543-3896delAAAAAAAAAAAA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140838075	ATAGTGTG others(5): Show ATAGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01167.hp1 HG01978.hp1 others(4): Show HG01099.hp1 HG01167.hp1 HG01978.hp1 HG02258.hp2 HG03209.hp2 HG04228.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0001 a0001c0001t0007	a0001c0001t0001g0042 a0001c0001t0001g0048 a0001c0001t0001g0057 others(4): Show a0001c0001t0001g0042 a0001c0001t0001g0048 a0001c0001t0001g0057 a0001c0001t0001g0102 a0001c0001t0001g0200 a0001c0001t0007g0109 a0001c0001t0007g0112	7	202	0.0347	-12	c.238 others(33): Show c.2388+40724_2388+40735delTAGTGTGTGTGT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140838077	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00423.hp1 NA18949.hp2 HG00423.hp1 NA18949.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0004 a0002c0002t0001 a0002c0002t0004	a0002c0002t0001g0164 a0002c0002t0004g0131 a0002c0002t0001g0164 a0002c0002t0004g0131	2	202	0.0099	-12	c.238 others(33): Show c.2388+40768_2388+40779delGTGTGTGTGTGT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140941191	TTTTCTTT others(5): Show TTTTCTTTCTTCC	T T	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01934.hp1 HG01978.hp2 others(5): Show HG01346.hp2 HG01934.hp1 HG01978.hp2 HG01993.hp2 HG02293.hp2 HG02486.hp2 HG02738.hp1 NA19005.hp2	a0001 a0002 a0011 a0001 a0002 a0011	a0001c0001 a0002c0002 a0011c0010 a0001c0001 a0002c0002 a0011c0010	a0001c0001t0001 a0001c0001t0006 a0002c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0006 a0002c0002t0001 a0011c0010t0001	a0001c0001t0001g0006 a0001c0001t0001g0090 a0001c0001t0001g0091 others(5): Show a0001c0001t0001g0006 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0006g0012 a0002c0002t0001g0188 a0011c0010t0001g0098	8	202	0.0396	-12	c.238 others(33): Show c.2389-37735_2389-37724delCCTTTCTTTCTT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140981687	ATCATTCA others(5): Show ATCATTCATTCAT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG01106.hp2 HG02155.hp1 others(5): Show HG00621.hp2 HG01106.hp2 HG02155.hp1 NA18966.hp2 NA18975.hp1 NA19000.hp1 NA19087.hp2 NA19091.hp2	a0001 a0002 a0009 a0001 a0002 a0009	a0001c0001 a0002c0002 a0009c0014 a0001c0001 a0002c0002 a0009c0014	a0001c0001t0001 a0002c0002t0001 a0009c0014t0001 a0001c0001t0001 a0002c0002t0001 a0009c0014t0001	a0001c0001t0001g0011 a0001c0001t0001g0028 a0001c0001t0001g0043 others(5): Show a0001c0001t0001g0011 a0001c0001t0001g0028 a0001c0001t0001g0043 a0001c0001t0001g0050 a0001c0001t0001g0085 a0002c0002t0001g0153 a0002c0002t0001g0165 a0009c0014t0001g0139	8	202	0.0396	-12	c.244 others(29): Show c.2448-771_2448-760delTCATTCATTCAT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	2/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140993462	TCACACAC others(5): Show TCACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01934.hp1 HG03225.hp2 others(1): Show HG01071.hp1 HG01934.hp1 HG03225.hp2 NA19240.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0003c0013 a0001c0001 a0003c0003 a0003c0013	a0001c0001t0006 a0003c0003t0006 a0003c0013t0006 a0001c0001t0006 a0003c0003t0006 a0003c0013t0006	a0001c0001t0006g0012 a0003c0003t0006g0070 a0003c0003t0006g0071 others(1): Show a0001c0001t0006g0012 a0003c0003t0006g0070 a0003c0003t0006g0071 a0003c0013t0006g0069	4	202	0.0198	-12	c.253 others(33): Show c.2536+10935_2536+10946delACACACACACAC	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	141000385	CTCTCTCT others(5): Show CTCTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0063 a0001c0001t0001g0063	1	202	0.0050	-12	c.253 others(31): Show c.2537-9240_2537-9229delCTCTCTCTCTAT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	141001822	TGACAGAG others(5): Show TGACAGAGAGGGA	T T	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0002 a0004c0007t0002	a0004c0007t0002g0202 a0004c0007t0002g0202	1	202	0.0050	-12	c.253 others(31): Show c.2537-7795_2537-7784delGGAGACAGAGAG	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	141005701	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0002 a0004c0007t0002	a0004c0007t0002g0202 a0004c0007t0002g0202	1	202	0.0050	-12	c.253 others(31): Show c.2537-3907_2537-3896delAAAAAAAAAAAA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140838075	ATAGTGTG others(5): Show ATAGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01167.hp1 HG01978.hp2 others(4): Show HG01099.hp1 HG01167.hp1 HG01978.hp2 HG02258.hp2 HG03209.hp2 HG04228.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0001 a0001c0001t0008	a0001c0001t0001g0023 a0001c0001t0001g0067 a0001c0001t0001g0074 others(4): Show a0001c0001t0001g0023 a0001c0001t0001g0067 a0001c0001t0001g0074 a0001c0001t0001g0083 a0001c0001t0001g0091 a0001c0001t0008g0089 a0001c0001t0008g0095	7	208	0.0337	-12	c.239 others(33): Show c.2394+34485_2394+34496delTAGTGTGTGTGT	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140838077	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00423.hp1 NA18949.hp2 HG00423.hp1 NA18949.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0005 a0002c0002t0002 a0002c0002t0005	a0002c0002t0002g0164 a0002c0002t0005g0112 a0002c0002t0002g0164 a0002c0002t0005g0112	2	208	0.0096	-12	c.239 others(33): Show c.2394+34529_2394+34540delGTGTGTGTGTGT	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140941191	TTTTCTTT others(5): Show TTTTCTTTCTTCC	T T	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01934.hp1 HG01978.hp1 others(5): Show HG01346.hp1 HG01934.hp1 HG01978.hp1 HG01993.hp1 HG02293.hp1 HG02486.hp1 HG02738.hp1 NA19005.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0007 a0002c0002t0002 a0001c0001t0001 a0001c0001t0007 a0002c0002t0002	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0017 others(5): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0025 a0001c0001t0007g0013 a0002c0002t0002g0208	8	208	0.0385	-12	c.239 others(33): Show c.2395-37735_2395-37724delCCTTTCTTTCTT	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140981687	ATCATTCA others(5): Show ATCATTCATTCAT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG01106.hp2 NA18966.hp2 others(4): Show HG00621.hp2 HG01106.hp2 NA18966.hp2 NA18975.hp2 NA19000.hp1 NA19087.hp1 NA19091.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0001c0001t0001 a0002c0002t0002	a0001c0001t0001g0021 a0001c0001t0001g0045 a0001c0001t0001g0068 others(4): Show a0001c0001t0001g0021 a0001c0001t0001g0045 a0001c0001t0001g0068 a0001c0001t0001g0076 a0002c0002t0002g0128 a0002c0002t0002g0147 a0002c0002t0002g0165	7	208	0.0337	-12	c.245 others(29): Show c.2454-771_2454-760delTCATTCATTCAT	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	2/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140993462	TCACACAC others(5): Show TCACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01934.hp1 HG03225.hp2 others(1): Show HG01071.hp2 HG01934.hp1 HG03225.hp2 NA19240.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0007 a0003c0005t0007 a0001c0001t0007 a0003c0005t0007	a0001c0001t0007g0013 a0003c0005t0007g0195 a0003c0005t0007g0196 others(1): Show a0001c0001t0007g0013 a0003c0005t0007g0195 a0003c0005t0007g0196 a0003c0005t0007g0197	4	208	0.0192	-12	c.254 others(33): Show c.2542+10935_2542+10946delACACACACACAC	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	141000385	CTCTCTCT others(5): Show CTCTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	208	0.0048	-12	c.254 others(31): Show c.2543-9240_2543-9229delCTCTCTCTCTAT	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	141001822	TGACAGAG others(5): Show TGACAGAGAGGGA	T T	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0006 a0003c0004t0006	a0003c0004t0006g0207 a0003c0004t0006g0207	1	208	0.0048	-12	c.254 others(31): Show c.2543-7795_2543-7784delGGAGACAGAGAG	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	141005701	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0006 a0003c0004t0006	a0003c0004t0006g0207 a0003c0004t0006g0207	1	208	0.0048	-12	c.254 others(31): Show c.2543-3907_2543-3896delAAAAAAAAAAAA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140838075	ATAGTGTG others(5): Show ATAGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01167.hp1 HG01978.hp2 others(4): Show HG01099.hp2 HG01167.hp1 HG01978.hp2 HG02258.hp1 HG03209.hp1 HG04228.hp2 NA20905.hp1	a0002 a0003 a0005 others(1): Show a0002 a0003 a0005 a0007	a0002c0002 a0003c0003 a0005c0005 others(1): Show a0002c0002 a0003c0003 a0005c0005 a0007c0010	a0002c0002t0001 a0003c0003t0001 a0003c0003t0009 others(2): Show a0002c0002t0001 a0003c0003t0001 a0003c0003t0009 a0005c0005t0001 a0007c0010t0001	a0002c0002t0001g0065 a0002c0002t0001g0075 a0003c0003t0001g0012 others(4): Show a0002c0002t0001g0065 a0002c0002t0001g0075 a0003c0003t0001g0012 a0003c0003t0009g0008 a0003c0003t0009g0111 a0005c0005t0001g0076 a0007c0010t0001g0069	7	212	0.0330	-12	c.238 others(33): Show c.2385+28504_2385+28515delTAGTGTGTGTGT	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140838077	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00423.hp1 NA18949.hp2 HG00423.hp1 NA18949.hp2	a0001 a0014 a0001 a0014	a0001c0001 a0014c0015 a0001c0001 a0014c0015	a0001c0001t0002 a0014c0015t0005 a0001c0001t0002 a0014c0015t0005	a0001c0001t0002g0171 a0014c0015t0005g0185 a0001c0001t0002g0171 a0014c0015t0005g0185	2	212	0.0094	-12	c.238 others(33): Show c.2385+28548_2385+28559delGTGTGTGTGTGT	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140941191	TTTTCTTT others(5): Show TTTTCTTTCTTCC	T T	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01934.hp2 HG01978.hp1 others(5): Show HG01346.hp1 HG01934.hp2 HG01978.hp1 HG01993.hp1 HG02293.hp1 HG02486.hp1 HG02738.hp1 NA19005.hp1	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0003c0003 a0005c0005 a0001c0001 a0003c0003 a0005c0005	a0001c0001t0002 a0003c0003t0001 a0003c0003t0008 others(1): Show a0001c0001t0002 a0003c0003t0001 a0003c0003t0008 a0005c0005t0001	a0001c0001t0002g0193 a0003c0003t0001g0077 a0003c0003t0001g0080 others(5): Show a0001c0001t0002g0193 a0003c0003t0001g0077 a0003c0003t0001g0080 a0003c0003t0001g0081 a0003c0003t0001g0083 a0003c0003t0001g0093 a0003c0003t0008g0024 a0005c0005t0001g0090	8	212	0.0377	-12	c.238 others(33): Show c.2386-37735_2386-37724delCCTTTCTTTCTT	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140981687	ATCATTCA others(5): Show ATCATTCATTCAT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01106.hp1 NA18966.hp1 others(4): Show HG00621.hp1 HG01106.hp1 NA18966.hp1 NA18975.hp2 NA19000.hp2 NA19087.hp2 NA19091.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0002 a0002c0002t0001 a0003c0003t0001 a0001c0001t0002 a0002c0002t0001 a0003c0003t0001	a0001c0001t0002g0131 a0001c0001t0002g0150 a0001c0001t0002g0172 others(4): Show a0001c0001t0002g0131 a0001c0001t0002g0150 a0001c0001t0002g0172 a0002c0002t0001g0040 a0002c0002t0001g0066 a0002c0002t0001g0095 a0003c0003t0001g0085	7	212	0.0330	-12	c.244 others(29): Show c.2445-771_2445-760delTCATTCATTCAT	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	2/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140993462	TCACACAC others(5): Show TCACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01934.hp2 HG03225.hp1 others(1): Show HG01071.hp2 HG01934.hp2 HG03225.hp1 NA19240.hp2	a0003 a0004 a0003 a0004	a0003c0003 a0004c0004 a0003c0003 a0004c0004	a0003c0003t0008 a0004c0004t0008 a0003c0003t0008 a0004c0004t0008	a0003c0003t0008g0024 a0004c0004t0008g0096 a0004c0004t0008g0097 others(1): Show a0003c0003t0008g0024 a0004c0004t0008g0096 a0004c0004t0008g0097 a0004c0004t0008g0098	4	212	0.0189	-12	c.253 others(33): Show c.2533+10935_2533+10946delACACACACACAC	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	141000385	CTCTCTCT others(5): Show CTCTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0028 a0002c0002t0001g0028	1	212	0.0047	-12	c.253 others(31): Show c.2534-9240_2534-9229delCTCTCTCTCTAT	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	141001822	TGACAGAG others(5): Show TGACAGAGAGGGA	T T	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0006 a0004c0004t0006	a0004c0004t0006g0106 a0004c0004t0006g0106	1	212	0.0047	-12	c.253 others(31): Show c.2534-7795_2534-7784delGGAGACAGAGAG	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	141005701	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0006 a0004c0004t0006	a0004c0004t0006g0106 a0004c0004t0006g0106	1	212	0.0047	-12	c.253 others(31): Show c.2534-3907_2534-3896delAAAAAAAAAAAA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140838075	ATAGTGTG others(5): Show ATAGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01167.hp1 HG01978.hp1 others(4): Show HG01099.hp2 HG01167.hp1 HG01978.hp1 HG02258.hp1 HG03209.hp2 HG04228.hp2 NA20905.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0008c0010 a0001c0001 a0008c0010	a0001c0001t0001 a0001c0001t0010 a0008c0010t0011 a0001c0001t0001 a0001c0001t0010 a0008c0010t0011	a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0174 others(4): Show a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0174 a0001c0001t0001g0180 a0001c0001t0010g0093 a0008c0010t0011g0050 a0008c0010t0011g0051	7	220	0.0318	-12	c.235 others(33): Show c.2352+13949_2352+13960delTAGTGTGTGTGT	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140838077	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00423.hp2 NA18949.hp1 HG00423.hp2 NA18949.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0006 a0002c0002t0002 a0002c0002t0006	a0002c0002t0002g0080 a0002c0002t0006g0106 a0002c0002t0002g0080 a0002c0002t0006g0106	2	220	0.0091	-12	c.235 others(33): Show c.2352+13993_2352+14004delGTGTGTGTGTGT	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140941191	TTTTCTTT others(5): Show TTTTCTTTCTTCC	T T	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01978.hp2 HG01993.hp2 others(4): Show HG01346.hp2 HG01978.hp2 HG01993.hp2 HG02293.hp1 HG02486.hp2 HG02738.hp2 NA19005.hp2	a0001 a0011 a0014 a0001 a0011 a0014	a0001c0001 a0011c0017 a0014c0012 a0001c0001 a0011c0017 a0014c0012	a0001c0001t0001 a0011c0017t0002 a0014c0012t0001 a0001c0001t0001 a0011c0017t0002 a0014c0012t0001	a0001c0001t0001g0177 a0001c0001t0001g0195 a0001c0001t0001g0196 others(4): Show a0001c0001t0001g0177 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0202 a0001c0001t0001g0218 a0011c0017t0002g0100 a0014c0012t0001g0197	7	220	0.0318	-12	c.235 others(33): Show c.2353-37735_2353-37724delCCTTTCTTTCTT	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140981687	ATCATTCA others(5): Show ATCATTCATTCAT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG01106.hp2 NA18966.hp2 others(4): Show HG00621.hp2 HG01106.hp2 NA18966.hp2 NA18975.hp2 NA19000.hp2 NA19087.hp1 NA19091.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0001c0001t0001 a0002c0002t0002	a0001c0001t0001g0122 a0001c0001t0001g0181 a0001c0001t0001g0182 others(4): Show a0001c0001t0001g0122 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0205 a0002c0002t0002g0008 a0002c0002t0002g0036 a0002c0002t0002g0081	7	220	0.0318	-12	c.241 others(29): Show c.2412-771_2412-760delTCATTCATTCAT	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	2/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140993462	TCACACAC others(5): Show TCACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG03225.hp2 NA19240.hp2 HG01071.hp1 HG03225.hp2 NA19240.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0008 a0003c0003t0008	a0003c0003t0008g0113 a0003c0003t0008g0188 a0003c0003t0008g0189 a0003c0003t0008g0113 a0003c0003t0008g0188 a0003c0003t0008g0189	3	220	0.0136	-12	c.250 others(33): Show c.2500+10935_2500+10946delACACACACACAC	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	141000385	CTCTCTCT others(5): Show CTCTCTCTCTCTA	C C	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0194 a0001c0001t0001g0194	1	220	0.0046	-12	c.250 others(31): Show c.2501-9240_2501-9229delCTCTCTCTCTAT	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	141001822	TGACAGAG others(5): Show TGACAGAGAGGGA	T T	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0013 a0003c0004t0013	a0003c0004t0013g0056 a0003c0004t0013g0056	1	220	0.0046	-12	c.250 others(31): Show c.2501-7795_2501-7784delGGAGACAGAGAG	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	141005701	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0013 a0003c0004t0013	a0003c0004t0013g0056 a0003c0004t0013g0056	1	220	0.0046	-12	c.250 others(31): Show c.2501-3907_2501-3896delAAAAAAAAAAAA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr5	TogoVar

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