Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PGBD5_chr1_230309490_230431332	230354482	ACCTATGA others(5): Show ACCTATGATCAGC	A A	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02630.hp2 HG02976.hp2 others(2): Show HG02145.hp2 HG02630.hp2 HG02976.hp2 HG03139.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0085 a0001c0001t0009 a0001c0001t0085	a0001c0001t0009g0012 a0001c0001t0009g0014 a0001c0001t0009g0015 others(2): Show a0001c0001t0009g0012 a0001c0001t0009g0014 a0001c0001t0009g0015 a0001c0001t0009g0164 a0001c0001t0085g0013	5	288	0.0174	-12	c.759 others(29): Show c.759+2400_759+2411delGCTGATCATAGG	PGBD5	ENSG00000177614.11	transcript	ENST00000391860.7	protein_coding	2/6			chr1	TogoVar
PGBD5_chr1_230309490_230431332	230375652	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00735.hp2 HG01175.hp2 others(34): Show HG00609.hp2 HG00735.hp2 HG01175.hp2 HG01256.hp2 HG01258.hp2 HG01358.hp2 HG01433.hp1 HG01496.hp2 HG01928.hp2 HG01943.hp1 HG01978.hp1 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp2 HG02135.hp1 HG02293.hp2 HG02698.hp1 HG03491.hp2 HG03492.hp1 NA18952.hp2 NA18954.hp1 NA18956.hp1 NA18960.hp1 NA18962.hp2 NA18967.hp2 NA18971.hp1 NA18975.hp1 NA18983.hp1 NA19004.hp1 NA19007.hp1 NA19009.hp2 NA19012.hp2 NA19056.hp1 NA19091.hp2 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0011 a0001c0001t0025 others(21): Show a0001c0001t0002 a0001c0001t0011 a0001c0001t0025 a0001c0001t0026 a0001c0001t0070 a0001c0001t0072 a0001c0001t0128 a0001c0001t0129 a0001c0001t0130 a0001c0001t0133 a0001c0001t0135 a0001c0001t0137 a0001c0002t0001 a0001c0002t0003 a0001c0002t0027 a0001c0002t0037 a0001c0002t0097 a0001c0002t0101 a0001c0002t0103 a0001c0002t0105 a0001c0002t0125 a0001c0002t0140 a0001c0002t0142 a0001c0002t0143	a0001c0001t0002g0135 a0001c0001t0002g0140 a0001c0001t0002g0141 others(34): Show a0001c0001t0002g0135 a0001c0001t0002g0140 a0001c0001t0002g0141 a0001c0001t0002g0186 a0001c0001t0002g0222 a0001c0001t0002g0225 a0001c0001t0002g0226 a0001c0001t0011g0171 a0001c0001t0025g0263 a0001c0001t0026g0272 a0001c0001t0070g0197 a0001c0001t0072g0169 a0001c0001t0128g0270 a0001c0001t0129g0265 a0001c0001t0130g0276 a0001c0001t0133g0277 a0001c0001t0135g0258 a0001c0001t0137g0282 a0001c0002t0001g0104 a0001c0002t0001g0105 a0001c0002t0001g0106 a0001c0002t0001g0142 a0001c0002t0001g0154 a0001c0002t0001g0221 a0001c0002t0003g0259 a0001c0002t0003g0262 a0001c0002t0003g0275 a0001c0002t0027g0254 a0001c0002t0037g0030 a0001c0002t0097g0124 a0001c0002t0101g0166 a0001c0002t0103g0206 a0001c0002t0105g0187 a0001c0002t0125g0243 a0001c0002t0140g0260 a0001c0002t0142g0284 a0001c0002t0143g0251	37	288	0.1285	-12	c.332 others(31): Show c.332-18343_332-18332delAAAAAAAAAAAA	PGBD5	ENSG00000177614.11	transcript	ENST00000391860.7	protein_coding	1/6			chr1	TogoVar
PGBD5_chr1_230309490_230431332	230397643	CCAAATCT others(5): Show CCAAATCTCCTCA	C C	intron_variant intron_variant	MODIFIER	NA18956.hp2 NA18956.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0279 a0001c0001t0041g0279	1	288	0.0035	-12	c.331 others(31): Show c.331+27943_331+27954delTGAGGAGATTTG	PGBD5	ENSG00000177614.11	transcript	ENST00000391860.7	protein_coding	1/6			chr1	TogoVar
PGC_chr6_41731711_41752397	41735504	CCGCCGCC others(5): Show CCGCCGCCGTCGG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0109 a0001c0001t0001g0109	1	464	0.0022	-12	c.13 others(23): Show c.1336_*1347delCCGACGGCGGCG	PGC	ENSG00000096088.16	transcript	ENST00000373025.7	protein_coding		1206		chr6	TogoVar
PGC_chr6_41731711_41752397	41738227	CATATATA others(5): Show CATATATATATGT	C C	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG02109.hp1 HG03041.hp1 others(2): Show HG00733.hp2 HG02109.hp1 HG03041.hp1 NA18941.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0029 a0001c0001t0001g0206 a0001c0001t0001g0254 a0001c0001t0001g0029 a0001c0001t0001g0206 a0001c0001t0001g0254	5	464	0.0108	-12	c.916 others(27): Show c.916-411_916-400delACATATATATAT	PGC	ENSG00000096088.16	transcript	ENST00000373025.7	protein_coding	7/8			chr6	TogoVar
PGF_chr14_74936834_74960597	74940553	GACACACA others(5): Show GACACACAGACAC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp1 HG02258.hp2 HG02273.hp1 others(16): Show HG01891.hp1 HG02258.hp2 HG02273.hp1 HG02559.hp2 HG02615.hp1 HG02615.hp2 HG02717.hp2 HG02809.hp1 HG02809.hp2 HG02897.hp2 HG02976.hp1 HG03041.hp2 HG03225.hp2 HG03579.hp2 NA18954.hp1 NA19004.hp1 NA19084.hp2 NA20752.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0010 others(1): Show a0001c0001t0001 a0001c0001t0009 a0001c0001t0010 a0001c0001t0015	a0001c0001t0001g0002 a0001c0001t0001g0009 a0001c0001t0001g0010 others(9): Show a0001c0001t0001g0002 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0028 a0001c0001t0001g0058 a0001c0001t0001g0071 a0001c0001t0001g0132 a0001c0001t0001g0135 a0001c0001t0009g0073 a0001c0001t0009g0121 a0001c0001t0010g0050 a0001c0001t0015g0131	19	406	0.0468	-12	c.21 others(23): Show c.2141_*2152delGTGTCTGTGTGT	PGF	ENSG00000119630.14	transcript	ENST00000555567.6	protein_coding		1280		chr14	TogoVar
PGF_chr14_74936834_74960597	74949166	CTGGTGGG others(5): Show CTGGTGGGGGTGG	C C	intron_variant intron_variant	MODIFIER	HG03490.hp2 HG03490.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0072 a0001c0001t0003g0072	1	406	0.0025	-12	c.315 others(27): Show c.315+179_315+190delCCACCCCCACCA	PGF	ENSG00000119630.14	transcript	ENST00000555567.6	protein_coding	3/6			chr14	TogoVar
PGGT1B_chr5_115199012_115267877	115207180	CATATATA others(5): Show CATATATATATAT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00408.hp1 HG00408.hp2 HG00558.hp2 others(92): Show HG00408.hp1 HG00408.hp2 HG00558.hp2 HG00621.hp1 HG00673.hp1 HG00741.hp2 HG01167.hp1 HG01243.hp2 HG01261.hp2 HG01515.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01934.hp2 HG01952.hp1 HG01975.hp2 HG01981.hp2 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02040.hp2 HG02074.hp2 HG02080.hp1 HG02132.hp1 HG02148.hp1 HG02280.hp1 HG02486.hp2 HG02559.hp2 HG02572.hp2 HG02602.hp1 HG02615.hp1 HG02622.hp1 HG02698.hp1 HG02717.hp1 HG03209.hp2 HG03491.hp2 HG03492.hp2 HG03540.hp2 HG03831.hp2 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18940.hp2 NA18941.hp1 NA18943.hp1 NA18944.hp1 NA18944.hp2 NA18945.hp1 NA18947.hp2 NA18949.hp1 NA18957.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18971.hp1 NA18972.hp2 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18980.hp2 NA18982.hp1 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18992.hp2 NA18993.hp2 NA18994.hp1 NA18994.hp2 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp2 NA19002.hp1 NA19003.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp2 NA19011.hp1 NA19043.hp1 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19070.hp1 NA19078.hp1 NA19082.hp2 NA19084.hp2 NA19085.hp2 NA19087.hp1 NA19090.hp1 NA20905.hp1 NA21309.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0004 a0001c0001 a0001c0002 a0003c0004	a0001c0001t0001 a0001c0001t0005 a0001c0001t0008 others(17): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0008 a0001c0001t0024 a0001c0001t0036 a0001c0001t0041 a0001c0001t0043 a0001c0001t0051 a0001c0001t0097 a0001c0001t0098 a0001c0001t0100 a0001c0001t0101 a0001c0001t0102 a0001c0001t0111 a0001c0001t0112 a0001c0001t0115 a0001c0001t0121 a0001c0001t0136 a0001c0002t0005 a0003c0004t0001	a0001c0001t0001g0001 a0001c0001t0001g0011 a0001c0001t0001g0012 others(82): Show a0001c0001t0001g0001 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0036 a0001c0001t0001g0052 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0114 a0001c0001t0001g0117 a0001c0001t0001g0119 a0001c0001t0001g0122 a0001c0001t0001g0138 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0181 a0001c0001t0001g0207 a0001c0001t0001g0208 a0001c0001t0001g0210 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0260 a0001c0001t0001g0293 a0001c0001t0005g0009 a0001c0001t0005g0089 a0001c0001t0005g0091 a0001c0001t0005g0093 a0001c0001t0005g0137 a0001c0001t0005g0300 a0001c0001t0005g0301 a0001c0001t0005g0302 a0001c0001t0005g0303 a0001c0001t0008g0006 a0001c0001t0008g0010 a0001c0001t0008g0037 a0001c0001t0008g0038 a0001c0001t0008g0039 a0001c0001t0008g0121 a0001c0001t0008g0135 a0001c0001t0024g0060 a0001c0001t0024g0141 a0001c0001t0024g0149 a0001c0001t0036g0156 a0001c0001t0036g0157 a0001c0001t0041g0261 a0001c0001t0041g0262 a0001c0001t0043g0155 a0001c0001t0043g0185 a0001c0001t0051g0264 a0001c0001t0051g0265 a0001c0001t0097g0118 a0001c0001t0098g0206 a0001c0001t0100g0115 a0001c0001t0101g0120 a0001c0001t0102g0189 a0001c0001t0111g0144 a0001c0001t0112g0116 a0001c0001t0115g0163 a0001c0001t0121g0146 a0001c0001t0136g0266 a0001c0002t0005g0090 a0003c0004t0001g0021	95	372	0.2554	-12	c.52 others(23): Show c.5210_*5221delATATATATATAT	PGGT1B	ENSG00000164219.10	transcript	ENST00000419445.6	protein_coding	9/9	5210		chr5	TogoVar
PGK1_chrX_78099248_78134295	78129220	CCTATCTA others(5): Show CCTATCTATCTAT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18940.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0055 a0001c0001t0055	a0001c0001t0055g0002 a0001c0001t0055g0002	1	308	0.0033	-12	c.34 others(23): Show c.3421_*3432delATCTATCTATCT	PGK1	ENSG00000102144.15	transcript	ENST00000373316.5	protein_coding	11/11	3421	INFO_REALIGN_3_PRIME	chrX	TogoVar
PGLS_chr19_17506649_17526288	17508983	TTTTATTT others(5): Show TTTTATTTATTTA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00438.hp2 HG00558.hp1 HG00558.hp2 others(50): Show HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00738.hp1 HG01070.hp1 HG01071.hp2 HG01256.hp1 HG01258.hp1 HG01361.hp1 HG01943.hp2 HG01978.hp1 HG02004.hp1 HG02015.hp1 HG02027.hp2 HG02080.hp2 HG02129.hp1 HG02155.hp1 HG02738.hp2 HG03491.hp2 HG03492.hp1 HG03669.hp1 HG03688.hp1 HG03710.hp2 HG03927.hp2 HG03942.hp1 HG04184.hp1 HG04199.hp2 HG04228.hp2 NA18612.hp2 NA18747.hp1 NA18947.hp2 NA18959.hp1 NA18960.hp1 NA18964.hp2 NA18966.hp2 NA18969.hp1 NA18973.hp1 NA18974.hp2 NA18979.hp2 NA18980.hp2 NA18983.hp1 NA18994.hp2 NA18995.hp2 NA18997.hp1 NA19004.hp2 NA19012.hp1 NA19012.hp2 NA19056.hp2 NA19059.hp2 NA19074.hp1 NA19075.hp1 NA19089.hp1 NA20805.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0001 a0001c0002t0005 a0001c0004t0001 a0001c0002t0001 a0001c0002t0005 a0001c0004t0001	a0001c0002t0001g0003 a0001c0002t0001g0004 a0001c0002t0001g0017 others(14): Show a0001c0002t0001g0003 a0001c0002t0001g0004 a0001c0002t0001g0017 a0001c0002t0001g0023 a0001c0002t0001g0037 a0001c0002t0001g0097 a0001c0002t0001g0121 a0001c0002t0001g0122 a0001c0002t0001g0124 a0001c0002t0001g0125 a0001c0002t0001g0126 a0001c0002t0001g0128 a0001c0002t0001g0130 a0001c0002t0005g0004 a0001c0004t0001g0123 a0001c0004t0001g0127 a0001c0004t0001g0129	53	442	0.1199	-12	c.-26 others(23): Show c.-2689_-2678delTTTATTTATTTA	PGLS	ENSG00000130313.7	transcript	ENST00000252603.7	protein_coding		2665		chr19	TogoVar
PGLS_chr19_17506649_17526288	17525335	CTTCATTC others(5): Show CTTCATTCATTCA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18985.hp2 NA19005.hp2 NA18985.hp2 NA19005.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	442	0.0045	-12	c.42 others(23): Show c.4255_*4266delTTCATTCATTCA	PGLS	ENSG00000130313.7	transcript	ENST00000252603.7	protein_coding		4048		chr19	TogoVar
PGLYRP2_chr19_15463645_15484501	15467834	TTTTTTTC others(5): Show TTTTTTTCCTTCC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0015 a0015	a0015c0015 a0015c0015	a0015c0015t0001 a0015c0015t0001	a0015c0015t0001g0240 a0015c0015t0001g0240	1	382	0.0026	-12	c.81 others(21): Show c.817_*828delGGAAGGAAAAAA	PGLYRP2	ENSG00000161031.13	transcript	ENST00000340880.5	protein_coding		810		chr19	TogoVar
PGLYRP2_chr19_15463645_15484501	15467838	TTTCCTTC others(5): Show TTTCCTTCCTTCC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00408.hp2 HG01256.hp2 HG01257.hp2 others(12): Show HG00408.hp2 HG01256.hp2 HG01257.hp2 HG01346.hp2 HG01884.hp1 HG01975.hp1 HG02965.hp1 HG02976.hp2 HG03130.hp1 HG03486.hp1 HG03654.hp1 HG03654.hp2 NA18955.hp1 NA18988.hp2 NA20805.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0005 a0001c0001 a0005c0005	a0001c0001t0001 a0005c0005t0002 a0001c0001t0001 a0005c0005t0002	a0001c0001t0001g0011 a0001c0001t0001g0024 a0001c0001t0001g0025 others(11): Show a0001c0001t0001g0011 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0211 a0001c0001t0001g0218 a0001c0001t0001g0229 a0001c0001t0001g0249 a0001c0001t0001g0280 a0001c0001t0001g0282 a0001c0001t0001g0317 a0001c0001t0001g0322 a0001c0001t0001g0330 a0005c0005t0002g0036	15	382	0.0393	-12	c.81 others(21): Show c.813_*824delGGAAGGAAGGAA	PGLYRP2	ENSG00000161031.13	transcript	ENST00000340880.5	protein_coding		806		chr19	TogoVar
PGLYRP2_chr19_15463645_15484501	15473470	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02155.hp1 HG02922.hp1 others(2): Show HG01109.hp2 HG02155.hp1 HG02922.hp1 HG02922.hp2 HG03041.hp2	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0003c0003 a0005c0005 a0001c0001 a0003c0003 a0005c0005	a0001c0001t0001 a0003c0003t0001 a0005c0005t0002 a0001c0001t0001 a0003c0003t0001 a0005c0005t0002	a0001c0001t0001g0165 a0001c0001t0001g0309 a0003c0003t0001g0334 others(2): Show a0001c0001t0001g0165 a0001c0001t0001g0309 a0003c0003t0001g0334 a0005c0005t0002g0034 a0005c0005t0002g0035	5	382	0.0131	-12	c.113 others(31): Show c.1133-1382_1133-1371delTTTTTTTTTTTT	PGLYRP2	ENSG00000161031.13	transcript	ENST00000340880.5	protein_coding	2/4			chr19	TogoVar
PGLYRP2_chr19_15463645_15484501	15482539	CCTTTCTT others(5): Show CCTTTCTTTCTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0128 a0003c0003t0001g0128	1	382	0.0026	-12	c.-31 others(23): Show c.-3180_-3169delAAAGAAAGAAAG	PGLYRP2	ENSG00000161031.13	transcript	ENST00000340880.5	protein_coding		3039		chr19	TogoVar
PGLYRP2_chr19_15463645_15484501	15482555	TCTTTCTT others(5): Show TCTTTCTTTCTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01515.hp2 HG01517.hp1 HG02559.hp1 HG01515.hp2 HG01517.hp1 HG02559.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0001 a0001c0001t0001 a0003c0003t0001	a0001c0001t0001g0010 a0001c0001t0001g0047 a0003c0003t0001g0017 a0001c0001t0001g0010 a0001c0001t0001g0047 a0003c0003t0001g0017	3	382	0.0079	-12	c.-31 others(23): Show c.-3196_-3185delGAAGAAAGAAAG	PGLYRP2	ENSG00000161031.13	transcript	ENST00000340880.5	protein_coding		3055		chr19	TogoVar
PGLYRP2_chr19_15463645_15484501	15482559	TCTTTCTT others(5): Show TCTTTCTTCCTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp1 HG02523.hp1 HG00738.hp1 HG02523.hp1	a0003 a0004 a0003 a0004	a0003c0003 a0004c0004 a0003c0003 a0004c0004	a0003c0003t0001 a0004c0004t0001 a0003c0003t0001 a0004c0004t0001	a0003c0003t0001g0133 a0004c0004t0001g0087 a0003c0003t0001g0133 a0004c0004t0001g0087	2	382	0.0052	-12	c.-32 others(23): Show c.-3200_-3189delGAAGGAAGAAAG	PGLYRP2	ENSG00000161031.13	transcript	ENST00000340880.5	protein_coding		3059		chr19	TogoVar
PGLYRP2_chr19_15463645_15484501	15482563	TCTTCCTT others(5): Show TCTTCCTTCCTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19007.hp2 NA19007.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0084 a0002c0002t0001g0084	1	382	0.0026	-12	c.-32 others(23): Show c.-3204_-3193delGAAGGAAGGAAG	PGLYRP2	ENSG00000161031.13	transcript	ENST00000340880.5	protein_coding		3063		chr19	TogoVar
PGLYRP2_chr19_15463645_15484501	15482604	CTTCCTTC others(5): Show CTTCCTTCCTTCT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02523.hp2 HG02735.hp1 NA18985.hp2 HG02523.hp2 HG02735.hp1 NA18985.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0004c0004t0001 a0001c0001t0001 a0004c0004t0001	a0001c0001t0001g0254 a0001c0001t0001g0258 a0004c0004t0001g0103 a0001c0001t0001g0254 a0001c0001t0001g0258 a0004c0004t0001g0103	3	382	0.0079	-12	c.-32 others(23): Show c.-3245_-3234delAGAAGGAAGGAA	PGLYRP2	ENSG00000161031.13	transcript	ENST00000340880.5	protein_coding		3104		chr19	TogoVar
PGLYRP2_chr19_15463645_15484501	15482608	CTTCCTTC others(5): Show CTTCCTTCTTTCT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG01069.hp2 HG01070.hp1 others(4): Show HG00099.hp2 HG01069.hp2 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01891.hp1 NA18980.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0049 a0001c0001t0001g0166 others(4): Show a0001c0001t0001g0008 a0001c0001t0001g0049 a0001c0001t0001g0166 a0001c0001t0001g0274 a0001c0001t0001g0284 a0001c0001t0001g0294 a0001c0001t0001g0295	7	382	0.0183	-12	c.-32 others(23): Show c.-3249_-3238delAGAAAGAAGGAA	PGLYRP2	ENSG00000161031.13	transcript	ENST00000340880.5	protein_coding		3108		chr19	TogoVar
PGLYRP2_chr19_15463645_15484501	15482612	CTTCTTTC others(5): Show CTTCTTTCTTTCT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02559.hp1 HG03195.hp1 NA20805.hp2 HG02559.hp1 HG03195.hp1 NA20805.hp2	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0003c0003 a0005c0005 a0001c0001 a0003c0003 a0005c0005	a0001c0001t0001 a0003c0003t0001 a0005c0005t0002 a0001c0001t0001 a0003c0003t0001 a0005c0005t0002	a0001c0001t0001g0024 a0003c0003t0001g0017 a0005c0005t0002g0033 a0001c0001t0001g0024 a0003c0003t0001g0017 a0005c0005t0002g0033	3	382	0.0079	-12	c.-32 others(23): Show c.-3253_-3242delAGAAAGAAAGAA	PGLYRP2	ENSG00000161031.13	transcript	ENST00000340880.5	protein_coding		3112		chr19	TogoVar
PGLYRP3_chr1_153292116_153317952	153297499	AAAGGAAG others(5): Show AAAGGAAGGAAGG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0094 a0002c0002t0094	a0002c0002t0094g0153 a0002c0002t0094g0153	1	434	0.0023	-12	c.44 others(21): Show c.445_*456delCCTTCCTTCCTT	PGLYRP3	ENSG00000159527.4	transcript	ENST00000683862.1	protein_coding	8/8	445		chr1	TogoVar
PGLYRP3_chr1_153292116_153317952	153297542	GGAAGGAA others(5): Show GGAAGGAAGGAAA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp2 HG01099.hp1 HG01109.hp1 others(3): Show HG00639.hp2 HG01099.hp1 HG01109.hp1 HG02630.hp2 HG03130.hp2 NA19240.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0023 a0002c0002t0023	a0002c0002t0023g0022 a0002c0002t0023g0213 a0002c0002t0023g0235 a0002c0002t0023g0022 a0002c0002t0023g0213 a0002c0002t0023g0235	6	434	0.0138	-12	c.40 others(21): Show c.402_*413delTTTCCTTCCTTC	PGLYRP3	ENSG00000159527.4	transcript	ENST00000683862.1	protein_coding	8/8	402		chr1	TogoVar
PGLYRP3_chr1_153292116_153317952	153297577	GAAAGAAG others(5): Show GAAAGAAGAAAGA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01884.hp1 NA19077.hp2 HG01884.hp1 NA19077.hp2	a0002 a0012 a0002 a0012	a0002c0011 a0012c0015 a0002c0011 a0012c0015	a0002c0011t0040 a0012c0015t0040 a0002c0011t0040 a0012c0015t0040	a0002c0011t0040g0221 a0012c0015t0040g0196 a0002c0011t0040g0221 a0012c0015t0040g0196	2	434	0.0046	-12	c.36 others(21): Show c.367_*378delTCTTTCTTCTTT	PGLYRP3	ENSG00000159527.4	transcript	ENST00000683862.1	protein_coding	8/8	367		chr1	TogoVar
PGLYRP4_chr1_153325120_153353841	153350628	GAAAGGAA others(5): Show GAAAGGAAAGAAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 HG00597.hp1 HG00733.hp1 others(44): Show HG00140.hp2 HG00597.hp1 HG00733.hp1 HG00741.hp2 HG01081.hp2 HG01106.hp1 HG01123.hp2 HG01168.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp1 HG01261.hp1 HG01952.hp1 HG01978.hp2 HG02056.hp2 HG02071.hp1 HG02080.hp2 HG02109.hp1 HG02135.hp1 HG02683.hp2 HG02735.hp1 HG02886.hp1 HG03041.hp2 HG03130.hp1 HG03239.hp1 HG03471.hp2 HG03654.hp2 HG03669.hp1 HG03710.hp2 HG04204.hp2 NA18522.hp1 NA18942.hp2 NA18951.hp1 NA18951.hp2 NA18957.hp2 NA18968.hp1 NA18974.hp1 NA18979.hp1 NA18993.hp2 NA19001.hp2 NA19002.hp2 NA19077.hp2 NA19084.hp1 NA19087.hp2 NA19088.hp2 NA20752.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0008 a0001c0001t0002 a0001c0001t0008	a0001c0001t0002g0002 a0001c0001t0002g0005 a0001c0001t0002g0016 others(15): Show a0001c0001t0002g0002 a0001c0001t0002g0005 a0001c0001t0002g0016 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0033 a0001c0001t0002g0073 a0001c0001t0002g0075 a0001c0001t0002g0077 a0001c0001t0002g0079 a0001c0001t0002g0080 a0001c0001t0002g0082 a0001c0001t0002g0083 a0001c0001t0002g0084 a0001c0001t0002g0085 a0001c0001t0008g0047	47	392	0.1199	-12	c.-21 others(23): Show c.-2159_-2148delTTTCTTTCCTTT	PGLYRP4	ENSG00000163218.15	transcript	ENST00000359650.10	protein_coding		1788		chr1	TogoVar
PGM1_chr1_63588411_63665245	63604917	CTGTGTGT others(5): Show CTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG03130.hp1 HG03209.hp1 others(1): Show HG02572.hp2 HG03130.hp1 HG03209.hp1 NA18944.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0006 a0002c0002 a0003c0003 a0001c0006 a0002c0002 a0003c0003	a0001c0006t0003 a0002c0002t0001 a0003c0003t0002 others(1): Show a0001c0006t0003 a0002c0002t0001 a0003c0003t0002 a0003c0003t0003	a0001c0006t0003g0141 a0002c0002t0001g0124 a0003c0003t0002g0142 others(1): Show a0001c0006t0003g0141 a0002c0002t0001g0124 a0003c0003t0002g0142 a0003c0003t0003g0143	4	366	0.0109	-12	c.246 others(31): Show c.246+11215_246+11226delGTGTGTGTGTGT	PGM1	ENSG00000079739.17	transcript	ENST00000371084.8	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
PGM1_chr1_63588411_63665245	63615550	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0161 a0001c0001t0001g0161	1	366	0.0027	-12	c.247 others(31): Show c.247-13856_247-13845delTTTTTTTTTTTT	PGM1	ENSG00000079739.17	transcript	ENST00000371084.8	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
PGM1_chr1_63588411_63665245	63633866	CTGTGTGT others(5): Show CTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG01496.hp2 HG01934.hp2 others(31): Show HG00609.hp2 HG01496.hp2 HG01934.hp2 HG02040.hp1 HG02056.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02129.hp1 HG02135.hp2 HG02293.hp2 HG03579.hp1 HG03834.hp2 NA18941.hp1 NA18948.hp1 NA18978.hp1 NA18985.hp2 NA18990.hp1 NA19002.hp1 NA19006.hp2 NA19007.hp2 NA19011.hp1 NA19055.hp2 NA19056.hp2 NA19062.hp1 NA19062.hp2 NA19065.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19074.hp1 NA19080.hp2 NA19084.hp2 NA19088.hp2	a0001 a0003 a0006 others(1): Show a0001 a0003 a0006 a0013	a0001c0001 a0001c0008 a0003c0003 others(3): Show a0001c0001 a0001c0008 a0003c0003 a0003c0020 a0006c0007 a0013c0019	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0008t0001 a0001c0008t0002 a0003c0003t0001 a0003c0020t0002 a0006c0007t0001 a0013c0019t0001	a0001c0001t0001g0004 a0001c0001t0001g0053 a0001c0001t0001g0092 others(30): Show a0001c0001t0001g0004 a0001c0001t0001g0053 a0001c0001t0001g0092 a0001c0001t0001g0096 a0001c0001t0001g0098 a0001c0001t0001g0111 a0001c0001t0001g0125 a0001c0001t0001g0174 a0001c0001t0001g0185 a0001c0001t0001g0223 a0001c0001t0001g0243 a0001c0001t0001g0254 a0001c0001t0001g0267 a0001c0001t0001g0278 a0001c0001t0001g0287 a0001c0001t0001g0310 a0001c0001t0001g0312 a0001c0001t0001g0330 a0001c0001t0002g0023 a0001c0001t0002g0054 a0001c0001t0002g0201 a0001c0001t0004g0109 a0001c0008t0001g0001 a0001c0008t0001g0337 a0001c0008t0001g0338 a0001c0008t0002g0058 a0003c0003t0001g0011 a0003c0003t0001g0258 a0003c0003t0001g0269 a0003c0003t0001g0279 a0003c0020t0002g0336 a0006c0007t0001g0354 a0013c0019t0001g0238	34	366	0.0929	-12	c.683 others(27): Show c.683-921_683-910delGTGTGTGTGTGT	PGM1	ENSG00000079739.17	transcript	ENST00000371084.8	protein_coding	4/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
PGM1_chr1_63588411_63665245	63633912	GTGTGTGT others(5): Show GTGTGTGTATATA	G G	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0003 a0005c0005t0003	a0005c0005t0003g0044 a0005c0005t0003g0044	1	366	0.0027	-12	c.683 others(27): Show c.683-915_683-904delGTGTGTATATAT	PGM1	ENSG00000079739.17	transcript	ENST00000371084.8	protein_coding	4/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
PGM1_chr1_63588411_63665245	63647259	CATATATA others(5): Show CATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02040.hp1 NA19058.hp2 HG02040.hp1 NA19058.hp2	a0001 a0009 a0001 a0009	a0001c0001 a0009c0012 a0001c0001 a0009c0012	a0001c0001t0001 a0009c0012t0001 a0001c0001t0001 a0009c0012t0001	a0001c0001t0001g0267 a0009c0012t0001g0070 a0001c0001t0001g0267 a0009c0012t0001g0070	2	366	0.0055	-12	c.114 others(31): Show c.1145-1220_1145-1209delTATATATATATA	PGM1	ENSG00000079739.17	transcript	ENST00000371084.8	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
PGM1_chr1_63588411_63665245	63656596	GTGTGTGT others(5): Show GTGTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01168.hp1 HG01169.hp2 others(30): Show HG01081.hp1 HG01168.hp1 HG01169.hp2 HG01192.hp2 HG01256.hp1 HG01258.hp2 HG02055.hp2 HG02080.hp2 HG02257.hp1 HG02257.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp2 HG02818.hp2 HG03098.hp1 HG03130.hp2 HG03225.hp1 HG03239.hp1 HG03453.hp1 HG03471.hp1 HG04115.hp2 HG06807.hp1 NA18747.hp1 NA18940.hp2 NA18942.hp2 NA18949.hp1 NA18985.hp1 NA18989.hp1 NA18990.hp1 NA18995.hp1 NA19010.hp2 NA19070.hp1 NA19074.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0005 a0008 a0010	a0001c0001 a0001c0008 a0001c0017 others(6): Show a0001c0001 a0001c0008 a0001c0017 a0002c0002 a0003c0003 a0005c0005 a0008c0009 a0010c0015 a0010c0022	a0001c0001t0001 a0001c0008t0001 a0001c0017t0001 others(6): Show a0001c0001t0001 a0001c0008t0001 a0001c0017t0001 a0002c0002t0001 a0003c0003t0001 a0005c0005t0001 a0008c0009t0001 a0010c0015t0008 a0010c0022t0001	a0001c0001t0001g0002 a0001c0001t0001g0077 a0001c0001t0001g0088 others(28): Show a0001c0001t0001g0002 a0001c0001t0001g0077 a0001c0001t0001g0088 a0001c0001t0001g0126 a0001c0001t0001g0156 a0001c0001t0001g0161 a0001c0001t0001g0165 a0001c0001t0001g0167 a0001c0001t0001g0178 a0001c0001t0001g0256 a0001c0001t0001g0287 a0001c0001t0001g0324 a0001c0001t0001g0352 a0001c0001t0001g0360 a0001c0008t0001g0001 a0001c0008t0001g0103 a0001c0008t0001g0338 a0001c0008t0001g0339 a0001c0017t0001g0345 a0002c0002t0001g0101 a0002c0002t0001g0116 a0002c0002t0001g0221 a0002c0002t0001g0232 a0002c0002t0001g0341 a0003c0003t0001g0183 a0005c0005t0001g0344 a0008c0009t0001g0146 a0008c0009t0001g0164 a0008c0009t0001g0318 a0010c0015t0008g0177 a0010c0022t0001g0078	33	366	0.0902	-12	c.159 others(31): Show c.1599+2132_1599+2143delGTGTGTGTGTAT	PGM1	ENSG00000079739.17	transcript	ENST00000371084.8	protein_coding	10/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
PGM2L1_chr11_74325316_74403433	74329222	TAATAAAT others(5): Show TAATAAATAAATA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp1 HG02257.hp1 HG02258.hp2 others(10): Show HG01884.hp1 HG02257.hp1 HG02258.hp2 HG02717.hp1 HG02723.hp1 HG02970.hp2 HG02976.hp1 HG03041.hp2 HG03195.hp1 HG03225.hp1 HG03540.hp2 NA19007.hp1 NA19240.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0004 a0002c0002 a0003c0003 a0001c0004 a0002c0002 a0003c0003	a0001c0004t0008 a0002c0002t0004 a0003c0003t0002 a0001c0004t0008 a0002c0002t0004 a0003c0003t0002	a0001c0004t0008g0010 a0001c0004t0008g0011 a0001c0004t0008g0012 others(7): Show a0001c0004t0008g0010 a0001c0004t0008g0011 a0001c0004t0008g0012 a0001c0004t0008g0255 a0001c0004t0008g0256 a0001c0004t0008g0258 a0001c0004t0008g0259 a0001c0004t0008g0260 a0002c0002t0004g0270 a0003c0003t0002g0004	13	380	0.0342	-12	c.74 others(23): Show c.7418_*7429delTATTTATTTATT	PGM2L1	ENSG00000165434.8	transcript	ENST00000298198.5	protein_coding		1093		chr11	TogoVar
PGM2L1_chr11_74325316_74403433	74343769	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0031 a0001c0013t0031	a0001c0013t0031g0343 a0001c0013t0031g0343	1	380	0.0026	-12	c.121 others(29): Show c.1219-365_1219-354delAAAAAAAAAAAA	PGM2L1	ENSG00000165434.8	transcript	ENST00000298198.5	protein_coding	9/13			chr11	TogoVar
PGM2L1_chr11_74325316_74403433	74395549	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0236 a0001c0001t0003g0236	1	380	0.0026	-12	c.111 others(29): Show c.111+2490_111+2501delAAAAAAAAAAAA	PGM2L1	ENSG00000165434.8	transcript	ENST00000298198.5	protein_coding	1/13			chr11	TogoVar
PGM2_chr4_37821686_37867937	37864439	TTTGTTGT others(5): Show TTTGTTGTTGTTG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0310 a0001c0001t0001g0310	1	446	0.0022	-12	c.28 others(23): Show c.2828_*2839delTTGTTGTTGTTG	PGM2	ENSG00000169299.14	transcript	ENST00000381967.9	protein_coding		1503		chr4	TogoVar
PGM5_chr9_68351611_68536061	68356253	GAAAAAAA others(5): Show GAAAAAAAAAAAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19003.hp2 NA19003.hp2	a0004 a0004	a0004c0010 a0004c0010	a0004c0010t0019 a0004c0010t0019	a0004c0010t0019g0245 a0004c0010t0019g0245	1	246	0.0041	-12	c.-87 others(21): Show c.-874_-863delAAAAAAAAAAAA	PGM5	ENSG00000154330.13	transcript	ENST00000396396.6	protein_coding		357		chr9	TogoVar
PGM5_chr9_68351611_68536061	68357912	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00639.hp2 HG00735.hp1 others(35): Show HG00280.hp1 HG00639.hp2 HG00735.hp1 HG00741.hp2 HG01071.hp1 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01891.hp2 HG02083.hp1 HG02129.hp2 HG02135.hp2 HG02148.hp2 HG02155.hp1 HG02602.hp2 HG02723.hp2 HG02970.hp2 HG03041.hp1 HG03041.hp2 HG03195.hp1 HG03516.hp1 HG03942.hp2 NA18906.hp2 NA18943.hp1 NA18951.hp1 NA18955.hp1 NA19003.hp1 NA19004.hp1 NA19030.hp2 NA19056.hp2 NA19057.hp2 NA19063.hp1 NA20129.hp2 NA20805.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0004 others(4): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0018 a0001c0020 a0003c0019	a0001c0001t0001 a0001c0002t0002 a0001c0002t0008 others(9): Show a0001c0001t0001 a0001c0002t0002 a0001c0002t0008 a0001c0002t0013 a0001c0002t0026 a0001c0004t0002 a0001c0004t0005 a0001c0004t0027 a0001c0005t0004 a0001c0018t0018 a0001c0020t0005 a0003c0019t0005	a0001c0001t0001g0086 a0001c0002t0002g0041 a0001c0002t0002g0042 others(35): Show a0001c0001t0001g0086 a0001c0002t0002g0041 a0001c0002t0002g0042 a0001c0002t0002g0043 a0001c0002t0002g0049 a0001c0002t0002g0050 a0001c0002t0002g0051 a0001c0002t0002g0052 a0001c0002t0002g0053 a0001c0002t0002g0054 a0001c0002t0002g0055 a0001c0002t0002g0056 a0001c0002t0002g0057 a0001c0002t0002g0058 a0001c0002t0002g0059 a0001c0002t0002g0060 a0001c0002t0002g0062 a0001c0002t0002g0063 a0001c0002t0002g0064 a0001c0002t0002g0066 a0001c0002t0002g0067 a0001c0002t0002g0068 a0001c0002t0008g0044 a0001c0002t0008g0065 a0001c0002t0013g0045 a0001c0002t0013g0046 a0001c0002t0013g0047 a0001c0002t0013g0048 a0001c0002t0026g0061 a0001c0004t0002g0238 a0001c0004t0002g0242 a0001c0004t0002g0243 a0001c0004t0005g0241 a0001c0004t0027g0240 a0001c0005t0004g0089 a0001c0018t0018g0069 a0001c0020t0005g0239 a0003c0019t0005g0237	38	246	0.1545	-12	c.261 others(27): Show c.261+565_261+576delACACACACACAC	PGM5	ENSG00000154330.13	transcript	ENST00000396396.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr9	TogoVar
PGM5_chr9_68351611_68536061	68376475	CTGTGTGT others(5): Show CTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp1 HG00609.hp2 others(8): Show HG00280.hp2 HG00323.hp1 HG00609.hp2 HG01168.hp2 HG01169.hp2 HG02145.hp2 HG02698.hp1 HG04228.hp2 NA18941.hp1 NA18965.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 a0001c0001t0002 a0001c0001t0005 a0001c0001t0008	a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0074 others(8): Show a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0074 a0001c0001t0002g0080 a0001c0001t0002g0082 a0001c0001t0005g0075 a0001c0001t0005g0076 a0001c0001t0005g0077 a0001c0001t0005g0079 a0001c0001t0008g0078 a0001c0001t0008g0081	11	246	0.0447	-12	c.262 others(29): Show c.262-1686_262-1675delGTGTGTGTGTGT	PGM5	ENSG00000154330.13	transcript	ENST00000396396.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr9	TogoVar
PGM5_chr9_68351611_68536061	68376765	ATTTCTTT others(5): Show ATTTCTTTCTTTC	A A	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01261.hp1 HG02155.hp2 others(8): Show HG01168.hp1 HG01261.hp1 HG02155.hp2 HG02698.hp2 HG03486.hp1 HG03579.hp2 NA18522.hp1 NA18941.hp1 NA18992.hp1 NA19003.hp2 NA19075.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0006 a0003c0013 others(1): Show a0001c0001 a0001c0006 a0003c0013 a0004c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0012 a0001c0006t0004 a0003c0013t0001 a0004c0010t0019	a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0002g0074 others(8): Show a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0002g0074 a0001c0001t0003g0172 a0001c0001t0003g0179 a0001c0001t0003g0199 a0001c0001t0003g0200 a0001c0001t0012g0099 a0001c0006t0004g0108 a0003c0013t0001g0151 a0004c0010t0019g0245	11	246	0.0447	-12	c.262 others(29): Show c.262-1376_262-1365delTTCTTTCTTTCT	PGM5	ENSG00000154330.13	transcript	ENST00000396396.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr9	TogoVar
PGM5_chr9_68351611_68536061	68376825	CTTTCTTT others(5): Show CTTTCTTTCTCTT	C C	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0102 a0001c0001t0001g0102	1	246	0.0041	-12	c.262 others(29): Show c.262-1372_262-1361delTTCTTTCTCTTT	PGM5	ENSG00000154330.13	transcript	ENST00000396396.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr9	TogoVar
PGM5_chr9_68351611_68536061	68401885	ATATATGT others(5): Show ATATATGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00741.hp2 HG01106.hp1 others(3): Show HG00735.hp1 HG00741.hp2 HG01106.hp1 HG03516.hp2 HG03942.hp1 NA19004.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0017 a0001c0002t0002 others(1): Show a0001c0001t0003 a0001c0001t0017 a0001c0002t0002 a0001c0002t0013	a0001c0001t0003g0159 a0001c0001t0017g0098 a0001c0002t0002g0058 others(3): Show a0001c0001t0003g0159 a0001c0001t0017g0098 a0001c0002t0002g0058 a0001c0002t0002g0066 a0001c0002t0013g0045 a0001c0002t0013g0046	6	246	0.0244	-12	c.104 others(31): Show c.1043+9414_1043+9425delATATGTGTGTGT	PGM5	ENSG00000154330.13	transcript	ENST00000396396.6	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr9	TogoVar
PGM5_chr9_68351611_68536061	68406666	ATATATAT others(5): Show ATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00741.hp2 HG01169.hp1 others(13): Show HG00280.hp2 HG00741.hp2 HG01169.hp1 HG01255.hp1 HG01258.hp1 HG02129.hp1 HG02451.hp2 HG02602.hp1 HG02622.hp1 HG02630.hp1 HG02723.hp2 HG02809.hp1 HG03516.hp2 HG03831.hp1 NA18992.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 others(1): Show a0001c0001 a0001c0002 a0001c0006 a0001c0021	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(6): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0017 a0001c0002t0002 a0001c0002t0013 a0001c0006t0004 a0001c0021t0032	a0001c0001t0001g0086 a0001c0001t0001g0111 a0001c0001t0001g0115 others(13): Show a0001c0001t0001g0086 a0001c0001t0001g0111 a0001c0001t0001g0115 a0001c0001t0001g0155 a0001c0001t0001g0169 a0001c0001t0001g0185 a0001c0001t0003g0183 a0001c0001t0003g0198 a0001c0001t0005g0079 a0001c0001t0007g0164 a0001c0001t0017g0098 a0001c0002t0002g0022 a0001c0002t0002g0064 a0001c0002t0013g0046 a0001c0006t0004g0127 a0001c0021t0032g0091	16	246	0.0650	-12	c.104 others(33): Show c.1043+14205_1043+14216delGTATATATATAT	PGM5	ENSG00000154330.13	transcript	ENST00000396396.6	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr9	TogoVar
PGM5_chr9_68351611_68536061	68410558	TGAGGAGG others(5): Show TGAGGAGGAGGAG	T T	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02572.hp1 HG02622.hp2 others(1): Show HG02258.hp2 HG02572.hp1 HG02622.hp2 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0009 a0001c0001t0002 a0001c0001t0005 a0001c0001t0009	a0001c0001t0002g0005 a0001c0001t0002g0070 a0001c0001t0005g0008 others(1): Show a0001c0001t0002g0005 a0001c0001t0002g0070 a0001c0001t0005g0008 a0001c0001t0009g0119	4	246	0.0163	-12	c.104 others(33): Show c.1043+18098_1043+18109delGAGGAGGAGGAG	PGM5	ENSG00000154330.13	transcript	ENST00000396396.6	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr9	TogoVar
PGM5_chr9_68351611_68536061	68415779	ATATCTAT others(5): Show ATATCTATCTATC	A A	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01891.hp2 HG02257.hp1 others(5): Show HG01175.hp1 HG01891.hp2 HG02257.hp1 HG02970.hp2 HG03041.hp2 HG03516.hp1 NA18906.hp2 NA20129.hp2	a0001 a0003 a0001 a0003	a0001c0004 a0003c0019 a0001c0004 a0003c0019	a0001c0004t0002 a0001c0004t0005 a0001c0004t0027 others(2): Show a0001c0004t0002 a0001c0004t0005 a0001c0004t0027 a0001c0004t0028 a0003c0019t0005	a0001c0004t0002g0238 a0001c0004t0002g0242 a0001c0004t0002g0243 others(5): Show a0001c0004t0002g0238 a0001c0004t0002g0242 a0001c0004t0002g0243 a0001c0004t0005g0241 a0001c0004t0005g0244 a0001c0004t0027g0240 a0001c0004t0028g0236 a0003c0019t0005g0237	8	246	0.0325	-12	c.104 others(33): Show c.1043+23332_1043+23343delATCTATCTATCT	PGM5	ENSG00000154330.13	transcript	ENST00000396396.6	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr9	TogoVar
PGM5_chr9_68351611_68536061	68529164	CGTGTGTG others(5): Show CGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG00609.hp2 NA18965.hp1 HG00609.hp2 NA18965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0078 a0001c0001t0008g0081 a0001c0001t0008g0078 a0001c0001t0008g0081	2	246	0.0081	-12	c.161 others(29): Show c.1615-367_1615-356delTGTGTGTGTGTG	PGM5	ENSG00000154330.13	transcript	ENST00000396396.6	protein_coding	10/10		INFO_REALIGN_3_PRIME	chr9	TogoVar
PGPEP1L_chr15_98963229_99012792	98979633	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18978.hp2 NA18978.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0128 a0001c0001t0001g0128	1	398	0.0025	-12	c.-14 others(31): Show c.-141-8487_-141-8476delAAAAAAAAAAAA	PGPEP1L	ENSG00000183571.11	transcript	ENST00000535714.2	protein_coding	2/4			chr15	TogoVar
PGPEP1L_chr15_98963229_99012792	98982700	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0000 a0000	a0000c0002 a0000c0002	a0000c0002t0001 a0000c0002t0001	a0000c0002t0001g0072 a0000c0002t0001g0072	1	398	0.0025	-12	c.-14 others(33): Show c.-141-11554_-141-11543delAAAAAAAAAAAA	PGPEP1L	ENSG00000183571.11	transcript	ENST00000535714.2	protein_coding	2/4			chr15	TogoVar
PGPEP1L_chr15_98963229_99012792	98984009	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02055.hp1 HG02886.hp2 others(1): Show HG01891.hp1 HG02055.hp1 HG02886.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0028 a0001c0001t0034 a0001c0001t0003 a0001c0001t0028 a0001c0001t0034	a0001c0001t0003g0217 a0001c0001t0003g0243 a0001c0001t0028g0215 others(1): Show a0001c0001t0003g0217 a0001c0001t0003g0243 a0001c0001t0028g0215 a0001c0001t0034g0339	4	398	0.0101	-12	c.-14 others(33): Show c.-141-12863_-141-12852delAAAAAAAAAAAA	PGPEP1L	ENSG00000183571.11	transcript	ENST00000535714.2	protein_coding	2/4			chr15	TogoVar
PGPEP1_chr19_18335598_18374950	18370831	GGGCACGG others(5): Show GGGCACGGTGGCA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0163 a0001c0001t0163	a0001c0001t0163g0166 a0001c0001t0163g0166	1	412	0.0024	-12	c.72 others(23): Show c.7249_*7260delGGCACGGTGGCA	PGPEP1	ENSG00000130517.14	transcript	ENST00000269919.11	protein_coding		882		chr19	TogoVar
PGP_chr16_2206593_2219840	2219319	TTTTTTAT others(5): Show TTTTTTATTTTTA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG01891.hp1 HG02109.hp2 others(17): Show HG01884.hp1 HG01891.hp1 HG02109.hp2 HG02257.hp1 HG02258.hp2 HG02280.hp2 HG02451.hp1 HG02559.hp2 HG02630.hp1 HG02630.hp2 HG02723.hp1 HG02723.hp2 HG03195.hp1 HG03453.hp2 HG03471.hp2 HG03486.hp1 HG03540.hp2 HG06807.hp1 NA19240.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0002 a0001c0001t0004 a0001c0001t0015 others(4): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0015 a0001c0001t0030 a0001c0001t0031 a0001c0003t0002 a0001c0004t0017	a0001c0001t0002g0002 a0001c0001t0004g0004 a0001c0001t0015g0018 others(4): Show a0001c0001t0002g0002 a0001c0001t0004g0004 a0001c0001t0015g0018 a0001c0001t0030g0036 a0001c0001t0031g0037 a0001c0003t0002g0007 a0001c0004t0017g0022	20	452	0.0443	-12	c.-45 others(23): Show c.-4554_-4543delTAAAAATAAAAA	PGP	ENSG00000184207.9	transcript	ENST00000333503.8	protein_coding		4480		chr16	TogoVar

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