Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PTPN12_chr7_77532295_77645069	77571695	TTTTATTT others(5): Show TTTTATTTATTTA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01256.hp1 HG03239.hp2 others(1): Show HG00140.hp2 HG01256.hp1 HG03239.hp2 NA20805.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0020 a0003c0003t0001g0169 a0003c0003t0001g0170 others(1): Show a0003c0003t0001g0020 a0003c0003t0001g0169 a0003c0003t0001g0170 a0003c0003t0001g0171	4	310	0.0129	-12	c.208 others(27): Show c.208+525_208+536delATTTATTTATTT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	2/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77604209	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00423.hp2 HG00438.hp1 others(14): Show HG00408.hp1 HG00423.hp2 HG00438.hp1 HG02015.hp2 HG03831.hp2 NA18942.hp2 NA18957.hp2 NA18964.hp2 NA18984.hp1 NA18992.hp2 NA19005.hp2 NA19054.hp2 NA19060.hp1 NA19064.hp1 NA19082.hp2 NA19090.hp2 NA19091.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0005 a0003c0003t0001g0172 a0003c0003t0001g0179 others(14): Show a0003c0003t0001g0005 a0003c0003t0001g0172 a0003c0003t0001g0179 a0003c0003t0001g0180 a0003c0003t0001g0181 a0003c0003t0001g0182 a0003c0003t0001g0183 a0003c0003t0001g0184 a0003c0003t0001g0185 a0003c0003t0001g0186 a0003c0003t0001g0187 a0003c0003t0001g0188 a0003c0003t0001g0189 a0003c0003t0001g0190 a0003c0003t0001g0191 a0003c0003t0001g0192 a0003c0003t0001g0248	17	310	0.0548	-12	c.696 others(29): Show c.696-3013_696-3002delTTTTTTTTTTTT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	8/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77625472	GCTCTCTC others(5): Show GCTCTCTCTCTCT	G G	intron_variant intron_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0299 a0003c0003t0001g0299	1	310	0.0032	-12	c.102 others(31): Show c.1026-1193_1026-1182delTCTCTCTCTCTC	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	12/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77625512	TCTCTCTC others(5): Show TCTCTCTCTCTCA	T T	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02922.hp2 NA18993.hp2 others(1): Show HG01891.hp1 HG02922.hp2 NA18993.hp2 NA19068.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0307 a0001c0001t0001g0308 a0002c0002t0001g0009 others(1): Show a0001c0001t0001g0307 a0001c0001t0001g0308 a0002c0002t0001g0009 a0002c0002t0001g0016	4	310	0.0129	-12	c.102 others(31): Show c.1026-1187_1026-1176delTCTCTCACTCTC	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	12/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77625563	CTCTTTTT others(5): Show CTCTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp2 NA18970.hp2 NA19056.hp1 others(2): Show HG02258.hp2 NA18970.hp2 NA19056.hp1 NA19079.hp1 NA19088.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0109 a0001c0001t0001g0141 a0001c0001t0001g0142 others(2): Show a0001c0001t0001g0109 a0001c0001t0001g0141 a0001c0001t0001g0142 a0001c0001t0001g0177 a0002c0002t0001g0011	5	310	0.0161	-12	c.102 others(31): Show c.1026-1140_1026-1129delCTTTTTTTTTTT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	12/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77627923	TTTTTCTT others(5): Show TTTTTCTTCTGTA	T T	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02922.hp2 HG01891.hp1 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0307 a0001c0001t0001g0308 a0001c0001t0001g0307 a0001c0001t0001g0308	2	310	0.0065	-12	c.199 others(29): Show c.1996+251_1996+262delTTCTTCTGTATT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	13/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77637944	AATTTTTT others(5): Show AATTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0305 a0001c0001t0001g0305	1	310	0.0032	-12	c.217 others(29): Show c.2174-679_2174-668delATTTTTTTTTTT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	16/17			chr7	TogoVar
PTPN12_chr7_77532295_77645069	77641210	ATTTTTTT others(5): Show ATTTTTTTTTTTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01070.hp1 NA18942.hp2 HG01070.hp1 NA18942.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0172 a0003c0003t0001g0220 a0003c0003t0001g0172 a0003c0003t0001g0220	2	310	0.0065	-12	c.19 others(23): Show c.1931_*1942delTTTTTTTTTTTT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding		1142		chr7	TogoVar
PTPN13_chr4_86589315_86820161	86709054	TACATACA others(5): Show TACATACACACAC	T T	intron_variant intron_variant	MODIFIER	NA18612.hp2 NA18612.hp2	a0003 a0003	a0003c0002 a0003c0002	a0003c0002t0001 a0003c0002t0001	a0003c0002t0001g0192 a0003c0002t0001g0192	1	198	0.0051	-12	c.119 others(31): Show c.1195+7269_1195+7280delTACACACACACA	PTPN13	ENSG00000163629.13	transcript	ENST00000411767.7	protein_coding	7/47		INFO_REALIGN_3_PRIME	chr4	TogoVar
PTPN13_chr4_86589315_86820161	86747549	GGCAGCAG others(5): Show GGCAGCAGCAGCA	G G	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG03139.hp1 HG03453.hp2 HG02486.hp1 HG03139.hp1 HG03453.hp2	a0006 a0006	a0006c0010 a0006c0010	a0006c0010t0003 a0006c0010t0003	a0006c0010t0003g0194 a0006c0010t0003g0195 a0006c0010t0003g0196 a0006c0010t0003g0194 a0006c0010t0003g0195 a0006c0010t0003g0196	3	198	0.0152	-12	c.265 others(31): Show c.2650+2444_2650+2455delCAGCAGCAGCAG	PTPN13	ENSG00000163629.13	transcript	ENST00000411767.7	protein_coding	17/47		INFO_REALIGN_3_PRIME	chr4	TogoVar
PTPN14_chr1_214343700_214556602	214364766	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0151 a0001c0002t0151	a0001c0002t0151g0239 a0001c0002t0151g0239	1	272	0.0037	-12	c.327 others(28): Show c.3272-103_3272-92delACACACACACAC	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	17/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214373558	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02451.hp2 HG02896.hp2 others(2): Show HG02055.hp2 HG02451.hp2 HG02896.hp2 HG03209.hp1 HG03491.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0006 a0001c0022 others(2): Show a0001c0001 a0001c0006 a0001c0022 a0001c0025 a0003c0005	a0001c0001t0150 a0001c0006t0077 a0001c0022t0167 others(2): Show a0001c0001t0150 a0001c0006t0077 a0001c0022t0167 a0001c0025t0149 a0003c0005t0066	a0001c0001t0150g0195 a0001c0006t0077g0072 a0001c0022t0167g0248 others(2): Show a0001c0001t0150g0195 a0001c0006t0077g0072 a0001c0022t0167g0248 a0001c0025t0149g0236 a0003c0005t0066g0083	5	272	0.0184	-12	c.290 others(29): Show c.2908-731_2908-720delGTGTGTGTGTGT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	15/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214395588	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01074.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0091 a0001c0002t0091	a0001c0002t0091g0125 a0001c0002t0091g0125	1	272	0.0037	-12	c.759 others(27): Show c.759-614_759-603delGTGTGTGTGTGT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	8/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214457992	CATCTATA others(5): Show CATCTATATCTAT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(166): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00323.hp2 HG00408.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp2 HG00642.hp2 HG00733.hp1 HG00738.hp1 HG01074.hp2 HG01081.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01256.hp1 HG01257.hp1 HG01496.hp1 HG01515.hp1 HG01516.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01981.hp1 HG01993.hp2 HG02004.hp2 HG02027.hp1 HG02055.hp1 HG02055.hp2 HG02083.hp1 HG02129.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02976.hp1 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp2 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03490.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03831.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18944.hp2 NA18945.hp2 NA18949.hp2 NA18955.hp2 NA18963.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18972.hp1 NA18972.hp2 NA18979.hp1 NA18979.hp2 NA18982.hp2 NA18988.hp2 NA18989.hp1 NA18995.hp2 NA18999.hp2 NA19002.hp2 NA19004.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19030.hp1 NA19030.hp2 NA19054.hp2 NA19063.hp1 NA19064.hp2 NA19065.hp2 NA19074.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp2 NA19084.hp1 NA19084.hp2 NA19087.hp1 NA19087.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20752.hp2 NA20905.hp1 NA21309.hp2	a0001 a0002 a0003 others(9): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0009 a0010 a0011 a0012	a0001c0001 a0001c0002 a0001c0006 others(17): Show a0001c0001 a0001c0002 a0001c0006 a0001c0008 a0001c0010 a0001c0015 a0001c0022 a0001c0023 a0001c0025 a0002c0003 a0003c0005 a0004c0004 a0005c0007 a0006c0011 a0007c0012 a0008c0009 a0009c0027 a0010c0013 a0011c0020 a0012c0021	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(116): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0014 a0001c0001t0016 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0024 a0001c0001t0025 a0001c0001t0028 a0001c0001t0032 a0001c0001t0036 a0001c0001t0038 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0047 a0001c0001t0048 a0001c0001t0049 a0001c0001t0051 a0001c0001t0052 a0001c0001t0057 a0001c0001t0058 a0001c0001t0061 a0001c0001t0067 a0001c0001t0068 a0001c0001t0071 a0001c0001t0072 a0001c0001t0074 a0001c0001t0076 a0001c0001t0088 a0001c0001t0090 a0001c0001t0118 a0001c0001t0119 a0001c0001t0120 a0001c0001t0121 a0001c0001t0123 a0001c0001t0125 a0001c0001t0127 a0001c0001t0130 a0001c0001t0132 a0001c0001t0133 a0001c0001t0134 a0001c0001t0135 a0001c0001t0136 a0001c0001t0141 a0001c0001t0142 a0001c0001t0150 a0001c0001t0158 a0001c0001t0159 a0001c0001t0160 a0001c0001t0161 a0001c0001t0163 a0001c0001t0165 a0001c0001t0168 a0001c0001t0174 a0001c0001t0176 a0001c0001t0177 a0001c0001t0178 a0001c0001t0179 a0001c0001t0181 a0001c0002t0001 a0001c0002t0006 a0001c0002t0012 a0001c0002t0013 a0001c0002t0020 a0001c0002t0078 a0001c0002t0080 a0001c0002t0081 a0001c0002t0082 a0001c0002t0143 a0001c0002t0144 a0001c0002t0151 a0001c0006t0077 a0001c0006t0180 a0001c0008t0010 a0001c0008t0015 a0001c0010t0018 a0001c0015t0001 a0001c0022t0167 a0001c0023t0169 a0001c0025t0149 a0002c0003t0031 a0002c0003t0084 a0002c0003t0086 a0002c0003t0087 a0002c0003t0089 a0002c0003t0147 a0002c0003t0170 a0002c0003t0171 a0002c0003t0172 a0002c0003t0183 a0002c0003t0184 a0003c0005t0064 a0003c0005t0065 a0003c0005t0166 a0004c0004t0005 a0004c0004t0070 a0004c0004t0073 a0004c0004t0075 a0004c0004t0175 a0005c0007t0029 a0005c0007t0185 a0006c0011t0164 a0007c0012t0005 a0008c0009t0033 a0008c0009t0034 a0009c0027t0148 a0010c0013t0035 a0011c0020t0055 a0012c0021t0085	a0001c0001t0002g0014 a0001c0001t0002g0015 a0001c0001t0002g0016 others(166): Show a0001c0001t0002g0014 a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0020 a0001c0001t0002g0030 a0001c0001t0002g0043 a0001c0001t0002g0059 a0001c0001t0002g0101 a0001c0001t0002g0104 a0001c0001t0002g0105 a0001c0001t0002g0147 a0001c0001t0002g0173 a0001c0001t0002g0180 a0001c0001t0003g0056 a0001c0001t0003g0074 a0001c0001t0003g0075 a0001c0001t0003g0093 a0001c0001t0003g0102 a0001c0001t0003g0119 a0001c0001t0003g0141 a0001c0001t0003g0166 a0001c0001t0003g0172 a0001c0001t0004g0039 a0001c0001t0004g0041 a0001c0001t0004g0073 a0001c0001t0004g0109 a0001c0001t0004g0145 a0001c0001t0005g0100 a0001c0001t0005g0171 a0001c0001t0009g0058 a0001c0001t0010g0079 a0001c0001t0011g0036 a0001c0001t0011g0038 a0001c0001t0011g0123 a0001c0001t0014g0031 a0001c0001t0016g0114 a0001c0001t0017g0189 a0001c0001t0018g0175 a0001c0001t0019g0024 a0001c0001t0019g0095 a0001c0001t0024g0211 a0001c0001t0024g0233 a0001c0001t0025g0207 a0001c0001t0025g0240 a0001c0001t0028g0243 a0001c0001t0032g0061 a0001c0001t0036g0160 a0001c0001t0038g0138 a0001c0001t0040g0148 a0001c0001t0041g0042 a0001c0001t0042g0033 a0001c0001t0043g0029 a0001c0001t0044g0161 a0001c0001t0045g0021 a0001c0001t0047g0184 a0001c0001t0048g0178 a0001c0001t0049g0167 a0001c0001t0051g0165 a0001c0001t0052g0131 a0001c0001t0057g0028 a0001c0001t0058g0009 a0001c0001t0061g0124 a0001c0001t0067g0017 a0001c0001t0068g0151 a0001c0001t0071g0121 a0001c0001t0072g0113 a0001c0001t0074g0128 a0001c0001t0076g0013 a0001c0001t0088g0066 a0001c0001t0090g0027 a0001c0001t0118g0040 a0001c0001t0119g0194 a0001c0001t0120g0196 a0001c0001t0121g0199 a0001c0001t0123g0227 a0001c0001t0125g0226 a0001c0001t0127g0238 a0001c0001t0130g0218 a0001c0001t0132g0222 a0001c0001t0133g0205 a0001c0001t0134g0235 a0001c0001t0135g0193 a0001c0001t0136g0200 a0001c0001t0141g0232 a0001c0001t0142g0208 a0001c0001t0150g0195 a0001c0001t0158g0220 a0001c0001t0159g0241 a0001c0001t0160g0242 a0001c0001t0161g0259 a0001c0001t0163g0258 a0001c0001t0165g0251 a0001c0001t0168g0250 a0001c0001t0174g0263 a0001c0001t0176g0265 a0001c0001t0177g0271 a0001c0001t0178g0268 a0001c0001t0179g0261 a0001c0001t0181g0267 a0001c0002t0001g0032 a0001c0002t0001g0055 a0001c0002t0001g0092 a0001c0002t0001g0096 a0001c0002t0001g0110 a0001c0002t0001g0111 a0001c0002t0001g0116 a0001c0002t0001g0117 a0001c0002t0001g0118 a0001c0002t0001g0134 a0001c0002t0001g0150 a0001c0002t0001g0164 a0001c0002t0001g0177 a0001c0002t0001g0179 a0001c0002t0006g0044 a0001c0002t0006g0070 a0001c0002t0006g0098 a0001c0002t0006g0103 a0001c0002t0012g0022 a0001c0002t0012g0034 a0001c0002t0012g0091 a0001c0002t0013g0204 a0001c0002t0020g0057 a0001c0002t0078g0085 a0001c0002t0080g0023 a0001c0002t0081g0115 a0001c0002t0082g0140 a0001c0002t0143g0191 a0001c0002t0144g0231 a0001c0002t0151g0239 a0001c0006t0077g0072 a0001c0006t0180g0272 a0001c0008t0010g0076 a0001c0008t0015g0182 a0001c0008t0015g0183 a0001c0010t0018g0108 a0001c0015t0001g0053 a0001c0022t0167g0248 a0001c0023t0169g0256 a0001c0025t0149g0236 a0002c0003t0031g0186 a0002c0003t0084g0062 a0002c0003t0086g0026 a0002c0003t0087g0077 a0002c0003t0089g0010 a0002c0003t0147g0197 a0002c0003t0170g0247 a0002c0003t0171g0252 a0002c0003t0172g0254 a0002c0003t0183g0264 a0002c0003t0184g0262 a0003c0005t0064g0187 a0003c0005t0065g0012 a0003c0005t0166g0255 a0004c0004t0005g0081 a0004c0004t0070g0008 a0004c0004t0073g0007 a0004c0004t0075g0082 a0004c0004t0175g0269 a0005c0007t0029g0244 a0005c0007t0029g0245 a0005c0007t0185g0266 a0006c0011t0164g0249 a0007c0012t0005g0149 a0008c0009t0033g0157 a0008c0009t0034g0084 a0009c0027t0148g0234 a0010c0013t0035g0181 a0011c0020t0055g0185 a0012c0021t0085g0080	169	272	0.6213	-12	c.175 others(29): Show c.175-6030_175-6019delATAGATATAGAT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	2/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214458044	GAGAGAGA others(5): Show GAGAGAGAGAGAT	G G	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG02723.hp1 HG02970.hp1 others(3): Show HG01106.hp2 HG02723.hp1 HG02970.hp1 HG03098.hp2 NA20129.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0067 a0001c0001t0088 a0001c0001t0160 others(3): Show a0001c0001t0067 a0001c0001t0088 a0001c0001t0160 a0001c0001t0174 a0002c0003t0172 a0002c0003t0183	a0001c0001t0067g0017 a0001c0001t0088g0066 a0001c0001t0160g0242 others(3): Show a0001c0001t0067g0017 a0001c0001t0088g0066 a0001c0001t0160g0242 a0001c0001t0174g0263 a0002c0003t0172g0254 a0002c0003t0183g0264	6	272	0.0221	-12	c.175 others(29): Show c.175-6082_175-6071delATCTCTCTCTCT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	2/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214465039	CCCCCCCC others(5): Show CCCCCCCCCCCCA	C C	intron_variant intron_variant	MODIFIER	HG02280.hp2 NA19043.hp2 HG02280.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0162 a0001c0001t0008 a0001c0001t0162	a0001c0001t0008g0002 a0001c0001t0162g0253 a0001c0001t0008g0002 a0001c0001t0162g0253	2	272	0.0074	-12	c.-15 others(27): Show c.-154-94_-154-83delTGGGGGGGGGGG	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214495659	TTTTTTTT others(5): Show TTTTTTTTATTTA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(64): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00323.hp2 HG00558.hp2 HG00642.hp2 HG00738.hp1 HG01081.hp1 HG01175.hp1 HG01243.hp1 HG01243.hp2 HG01515.hp1 HG01516.hp1 HG01891.hp1 HG01981.hp1 HG02027.hp1 HG02055.hp1 HG02055.hp2 HG02135.hp2 HG02145.hp2 HG02280.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02723.hp2 HG02735.hp2 HG02886.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG03017.hp2 HG03098.hp2 HG03130.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03471.hp1 HG03490.hp1 HG03540.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 NA18522.hp1 NA18906.hp1 NA18944.hp2 NA18955.hp2 NA18979.hp2 NA18999.hp1 NA19004.hp1 NA19007.hp1 NA19010.hp1 NA19030.hp2 NA19054.hp2 NA19065.hp2 NA19074.hp2 NA19081.hp2 NA19087.hp2 NA19240.hp2 NA20752.hp1 NA20905.hp2	a0001 a0002 a0004 others(4): Show a0001 a0002 a0004 a0005 a0007 a0008 a0010	a0001c0001 a0001c0002 a0001c0006 others(8): Show a0001c0001 a0001c0002 a0001c0006 a0001c0019 a0001c0023 a0002c0003 a0004c0004 a0005c0007 a0007c0012 a0008c0009 a0010c0013	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(53): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0001t0011 a0001c0001t0014 a0001c0001t0018 a0001c0001t0019 a0001c0001t0024 a0001c0001t0025 a0001c0001t0032 a0001c0001t0041 a0001c0001t0042 a0001c0001t0045 a0001c0001t0049 a0001c0001t0057 a0001c0001t0061 a0001c0001t0067 a0001c0001t0068 a0001c0001t0071 a0001c0001t0123 a0001c0001t0125 a0001c0001t0130 a0001c0001t0133 a0001c0001t0134 a0001c0001t0159 a0001c0001t0161 a0001c0001t0163 a0001c0001t0177 a0001c0001t0179 a0001c0001t0181 a0001c0002t0001 a0001c0002t0012 a0001c0002t0013 a0001c0002t0020 a0001c0002t0080 a0001c0002t0083 a0001c0002t0143 a0001c0002t0144 a0001c0006t0077 a0001c0019t0146 a0001c0023t0169 a0002c0003t0086 a0002c0003t0182 a0004c0004t0005 a0004c0004t0070 a0004c0004t0073 a0004c0004t0075 a0004c0004t0175 a0005c0007t0029 a0007c0012t0005 a0007c0012t0026 a0008c0009t0033 a0008c0009t0034 a0010c0013t0035	a0001c0001t0002g0043 a0001c0001t0002g0101 a0001c0001t0002g0147 others(64): Show a0001c0001t0002g0043 a0001c0001t0002g0101 a0001c0001t0002g0147 a0001c0001t0003g0074 a0001c0001t0003g0075 a0001c0001t0003g0102 a0001c0001t0003g0166 a0001c0001t0003g0172 a0001c0001t0004g0039 a0001c0001t0004g0145 a0001c0001t0005g0100 a0001c0001t0005g0171 a0001c0001t0009g0058 a0001c0001t0011g0123 a0001c0001t0014g0031 a0001c0001t0018g0175 a0001c0001t0019g0024 a0001c0001t0024g0233 a0001c0001t0025g0207 a0001c0001t0032g0061 a0001c0001t0041g0042 a0001c0001t0042g0033 a0001c0001t0045g0021 a0001c0001t0049g0167 a0001c0001t0057g0028 a0001c0001t0061g0124 a0001c0001t0067g0017 a0001c0001t0068g0151 a0001c0001t0071g0121 a0001c0001t0123g0227 a0001c0001t0125g0226 a0001c0001t0130g0218 a0001c0001t0133g0205 a0001c0001t0134g0235 a0001c0001t0159g0241 a0001c0001t0161g0259 a0001c0001t0163g0258 a0001c0001t0177g0271 a0001c0001t0179g0261 a0001c0001t0181g0267 a0001c0002t0001g0150 a0001c0002t0012g0022 a0001c0002t0012g0034 a0001c0002t0013g0204 a0001c0002t0020g0057 a0001c0002t0020g0153 a0001c0002t0080g0023 a0001c0002t0083g0146 a0001c0002t0143g0191 a0001c0002t0144g0231 a0001c0006t0077g0072 a0001c0019t0146g0212 a0001c0023t0169g0256 a0002c0003t0086g0026 a0002c0003t0182g0270 a0004c0004t0005g0081 a0004c0004t0070g0008 a0004c0004t0073g0007 a0004c0004t0075g0082 a0004c0004t0175g0269 a0005c0007t0029g0244 a0005c0007t0029g0245 a0007c0012t0005g0149 a0007c0012t0026g0237 a0008c0009t0033g0157 a0008c0009t0034g0084 a0010c0013t0035g0181	67	272	0.2463	-12	c.-15 others(33): Show c.-154-30714_-154-30703delTAAATAAAAAAA	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214556008	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00621.hp2 HG02280.hp2 HG02896.hp1 others(7): Show HG00621.hp2 HG02280.hp2 HG02896.hp1 HG02897.hp2 HG02976.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp2 HG03225.hp2 HG03579.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0003 a0004c0004 a0001c0001 a0002c0003 a0004c0004	a0001c0001t0008 a0001c0001t0058 a0001c0001t0076 others(6): Show a0001c0001t0008 a0001c0001t0058 a0001c0001t0076 a0001c0001t0109 a0001c0001t0165 a0002c0003t0023 a0002c0003t0089 a0004c0004t0070 a0004c0004t0073	a0001c0001t0008g0002 a0001c0001t0008g0065 a0001c0001t0058g0009 others(7): Show a0001c0001t0008g0002 a0001c0001t0008g0065 a0001c0001t0058g0009 a0001c0001t0076g0013 a0001c0001t0109g0156 a0001c0001t0165g0251 a0002c0003t0023g0011 a0002c0003t0089g0010 a0004c0004t0070g0008 a0004c0004t0073g0007	10	272	0.0368	-12	c.-49 others(23): Show c.-4992_-4981delACACACACACAC	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding		4407		chr1	TogoVar
PTPN18_chr2_130351056_130380405	130361512	CTCTTTCT others(5): Show CTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01258.hp1 HG01358.hp2 others(15): Show HG01081.hp1 HG01258.hp1 HG01358.hp2 HG01884.hp2 HG02129.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02965.hp2 HG02976.hp1 HG03471.hp2 HG03516.hp2 HG04184.hp2 NA18747.hp2 NA18906.hp2 NA18994.hp2 NA19074.hp1 NA19084.hp2	a0001 a0002 a0010 others(1): Show a0001 a0002 a0010 a0012	a0001c0001 a0001c0011 a0002c0002 others(3): Show a0001c0001 a0001c0011 a0002c0002 a0002c0004 a0010c0019 a0012c0017	a0001c0001t0001 a0001c0011t0001 a0002c0002t0002 others(4): Show a0001c0001t0001 a0001c0011t0001 a0002c0002t0002 a0002c0004t0008 a0002c0004t0030 a0010c0019t0001 a0012c0017t0008	a0001c0001t0001g0008 a0001c0001t0001g0041 a0001c0001t0001g0131 others(7): Show a0001c0001t0001g0008 a0001c0001t0001g0041 a0001c0001t0001g0131 a0001c0011t0001g0059 a0002c0002t0002g0071 a0002c0002t0002g0208 a0002c0004t0008g0007 a0002c0004t0030g0007 a0010c0019t0001g0041 a0012c0017t0008g0007	18	380	0.0474	-12	c.414 others(29): Show c.414+1909_414+1920delTTTCTTTCTTTC	PTPN18	ENSG00000072135.13	transcript	ENST00000175756.10	protein_coding	5/14		INFO_REALIGN_3_PRIME	chr2	TogoVar
PTPN1_chr20_50505383_50590241	50589084	GAAAAAAA others(5): Show GAAAAAAAAAAAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp2 HG00597.hp2 HG00609.hp2 others(102): Show HG00438.hp2 HG00597.hp2 HG00609.hp2 HG00621.hp2 HG00639.hp1 HG00673.hp2 HG00738.hp2 HG00741.hp1 HG01074.hp2 HG01081.hp2 HG01099.hp2 HG01106.hp1 HG01109.hp1 HG01123.hp2 HG01168.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01261.hp2 HG01346.hp2 HG01515.hp1 HG01516.hp1 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01981.hp1 HG02004.hp2 HG02027.hp1 HG02040.hp1 HG02071.hp2 HG02080.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp1 HG02257.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02523.hp2 HG02602.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02922.hp1 HG02970.hp1 HG03017.hp1 HG03098.hp1 HG03195.hp1 HG03471.hp1 HG03486.hp2 HG03492.hp2 HG03540.hp1 HG03579.hp1 HG03654.hp1 HG04115.hp2 HG04184.hp1 HG04204.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18939.hp2 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18946.hp1 NA18949.hp2 NA18952.hp1 NA18953.hp2 NA18954.hp2 NA18957.hp1 NA18959.hp2 NA18963.hp2 NA18964.hp2 NA18966.hp2 NA18969.hp1 NA18970.hp1 NA18971.hp1 NA18971.hp2 NA18972.hp2 NA18977.hp1 NA18981.hp2 NA18985.hp1 NA18987.hp1 NA18992.hp1 NA18993.hp1 NA18998.hp2 NA19003.hp2 NA19005.hp2 NA19007.hp2 NA19010.hp1 NA19057.hp2 NA19063.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19090.hp2 NA20752.hp1 NA20805.hp2 NA20905.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0001c0007	a0001c0001t0001 a0001c0001t0013 a0001c0001t0016 others(7): Show a0001c0001t0001 a0001c0001t0013 a0001c0001t0016 a0001c0001t0019 a0001c0001t0020 a0001c0002t0001 a0001c0004t0001 a0001c0004t0003 a0001c0004t0017 a0001c0007t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(96): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0013 a0001c0001t0001g0037 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0064 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0119 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0161 a0001c0001t0001g0180 a0001c0001t0001g0186 a0001c0001t0001g0224 a0001c0001t0001g0230 a0001c0001t0001g0238 a0001c0001t0001g0304 a0001c0001t0001g0321 a0001c0001t0013g0086 a0001c0001t0016g0122 a0001c0001t0019g0071 a0001c0001t0020g0039 a0001c0002t0001g0065 a0001c0004t0001g0253 a0001c0004t0003g0196 a0001c0004t0003g0215 a0001c0004t0003g0254 a0001c0004t0003g0255 a0001c0004t0017g0256 a0001c0007t0001g0038	105	336	0.3125	-12	c.63 others(23): Show c.6370_*6381delAAAAAAAAAAAA	PTPN1	ENSG00000196396.10	transcript	ENST00000371621.5	protein_coding		3844		chr20	TogoVar
PTPN1_chr20_50505383_50590241	50589295	TGTATTTT others(5): Show TGTATTTTGTAAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18972.hp2 NA18972.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0101 a0001c0001t0001g0101	1	336	0.0030	-12	c.65 others(23): Show c.6581_*6592delGTATTTTGTAAC	PTPN1	ENSG00000196396.10	transcript	ENST00000371621.5	protein_coding		4055		chr20	TogoVar
PTPN20_chr10_46906428_47007322	46953335	TTTTCTTT others(5): Show TTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01891.hp1 HG01934.hp1 others(7): Show HG01099.hp1 HG01891.hp1 HG01934.hp1 HG02486.hp2 HG02523.hp2 HG02976.hp1 HG03486.hp1 HG03942.hp2 NA19000.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0072 a0001c0001t0001g0170 a0001c0001t0001g0171 others(7): Show a0001c0001t0001g0072 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0177 a0001c0001t0002g0219 a0001c0001t0002g0221 a0001c0001t0002g0234 a0001c0001t0002g0235 a0001c0001t0002g0262 a0001c0001t0002g0277	10	312	0.0321	-12	c.340 others(29): Show c.340+6712_340+6723delCTTTCTTTCTTT	PTPN20	ENSG00000204179.11	transcript	ENST00000374339.5	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
PTPN20_chr10_46906428_47007322	46995333	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0282 a0001c0001t0002g0282	1	312	0.0032	-12	c.113 others(31): Show c.1135-4570_1135-4559delTTTTTTTTTTTT	PTPN20	ENSG00000204179.11	transcript	ENST00000374339.5	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
PTPN21_chr14_88460778_88560007	88474144	AAAAAAAA others(5): Show AAAAAAAAAAAAC	A A	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0023 a0002c0002t0023	a0002c0002t0023g0005 a0002c0002t0023g0005	1	348	0.0029	-12	c.251 others(29): Show c.2512-354_2512-343delGTTTTTTTTTTT	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	13/18			chr14	TogoVar
PTPN21_chr14_88460778_88560007	88477446	TAAAAAAA others(5): Show TAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02451.hp1 HG02559.hp2 others(3): Show HG02109.hp2 HG02451.hp1 HG02559.hp2 HG03195.hp1 NA18522.hp2 NA19240.hp2	a0004 a0006 a0013 a0004 a0006 a0013	a0004c0009 a0006c0007 a0013c0022 a0004c0009 a0006c0007 a0013c0022	a0004c0009t0018 a0006c0007t0013 a0013c0022t0027 a0004c0009t0018 a0006c0007t0013 a0013c0022t0027	a0004c0009t0018g0023 a0004c0009t0018g0024 a0006c0007t0013g0002 others(2): Show a0004c0009t0018g0023 a0004c0009t0018g0024 a0006c0007t0013g0002 a0006c0007t0013g0025 a0013c0022t0027g0030	6	348	0.0172	-12	c.251 others(31): Show c.2511+1462_2511+1473delTTTTTTTTTTTT	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	13/18			chr14	TogoVar
PTPN21_chr14_88460778_88560007	88518276	ACACACAC others(5): Show ACACACACATACG	A A	intron_variant intron_variant	MODIFIER	HG03017.hp1 HG03017.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0129 a0001c0001t0005g0129	1	348	0.0029	-12	c.181 others(29): Show c.181-1027_181-1016delCGTATGTGTGTG	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	2/18			chr14	TogoVar
PTPN21_chr14_88460778_88560007	88518380	GTGTGTGT others(5): Show GTGTGTGTATATA	G G	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0007 a0005c0006t0007	a0005c0006t0007g0018 a0005c0006t0007g0018	1	348	0.0029	-12	c.181 others(29): Show c.181-1131_181-1120delTATATACACACA	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	2/18			chr14	TogoVar
PTPN21_chr14_88460778_88560007	88518410	ATATATTT others(5): Show ATATATTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG04115.hp1 HG02922.hp2 HG04115.hp1	a0002 a0002	a0002c0002 a0002c0004 a0002c0002 a0002c0004	a0002c0002t0006 a0002c0004t0006 a0002c0002t0006 a0002c0004t0006	a0002c0002t0006g0079 a0002c0004t0006g0080 a0002c0002t0006g0079 a0002c0004t0006g0080	2	348	0.0058	-12	c.181 others(29): Show c.181-1161_181-1150delAAAAAAAATATA	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	2/18			chr14	TogoVar
PTPN22_chr1_113808811_113876712	113825703	ATGTTGTT others(5): Show ATGTTGTTGTTGT	A A	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0012 a0012	a0012c0010 a0012c0010	a0012c0010t0001 a0012c0010t0001	a0012c0010t0001g0192 a0012c0010t0001g0192	1	358	0.0028	-12	c.225 others(29): Show c.2251-543_2251-532delACAACAACAACA	PTPN22	ENSG00000134242.16	transcript	ENST00000359785.10	protein_coding	18/20			chr1	TogoVar
PTPN22_chr1_113808811_113876712	113849570	TGCTCTTT others(5): Show TGCTCTTTATTTA	T T	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0025 a0001c0001t0002g0025	1	358	0.0028	-12	c.829 others(27): Show c.829-956_829-945delTAAATAAAGAGC	PTPN22	ENSG00000134242.16	transcript	ENST00000359785.10	protein_coding	10/20			chr1	TogoVar
PTPN22_chr1_113808811_113876712	113850200	AGAAGGAA others(5): Show AGAAGGAAGGAAG	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00738.hp1 HG01081.hp2 others(44): Show HG00642.hp1 HG00738.hp1 HG01081.hp2 HG01169.hp2 HG01175.hp2 HG01243.hp1 HG01358.hp1 HG01361.hp1 HG01884.hp1 HG02004.hp1 HG02055.hp2 HG02083.hp1 HG02258.hp1 HG02630.hp1 HG02683.hp2 HG02886.hp1 HG02922.hp2 HG02965.hp2 HG03017.hp1 HG03017.hp2 HG03471.hp1 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03654.hp2 HG03710.hp2 HG03927.hp1 HG03942.hp2 HG04115.hp1 HG04184.hp2 NA18939.hp2 NA18941.hp1 NA18941.hp2 NA18944.hp2 NA18951.hp2 NA18980.hp2 NA18998.hp2 NA19001.hp2 NA19002.hp1 NA19063.hp2 NA19067.hp1 NA19074.hp2 NA19081.hp1 NA19240.hp2 NA20300.hp1 homoSapiens_chm13v2.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0004c0004t0001	a0001c0001t0001g0003 a0001c0001t0001g0031 a0001c0001t0001g0050 others(41): Show a0001c0001t0001g0003 a0001c0001t0001g0031 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0061 a0001c0001t0001g0077 a0001c0001t0001g0178 a0001c0001t0001g0186 a0001c0001t0001g0190 a0001c0001t0001g0197 a0001c0001t0001g0198 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0226 a0001c0001t0001g0230 a0001c0001t0001g0272 a0001c0001t0002g0007 a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0023 a0001c0001t0002g0094 a0001c0001t0002g0101 a0001c0001t0002g0106 a0001c0001t0002g0134 a0001c0001t0002g0144 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0154 a0001c0001t0002g0157 a0001c0001t0002g0162 a0001c0001t0003g0320 a0001c0001t0003g0321 a0001c0001t0003g0322 a0001c0001t0003g0333 a0001c0001t0003g0340 a0001c0001t0003g0346 a0001c0001t0004g0034 a0004c0004t0001g0008 a0004c0004t0001g0175	47	358	0.1313	-12	c.829 others(29): Show c.829-1586_829-1575delCTTCCTTCCTTC	PTPN22	ENSG00000134242.16	transcript	ENST00000359785.10	protein_coding	10/20			chr1	TogoVar
PTPN22_chr1_113808811_113876712	113863563	AATGCTGA others(5): Show AATGCTGATAAAT	A A	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0158 a0001c0001t0002g0158	1	358	0.0028	-12	c.88- others(27): Show c.88-4115_88-4104delATTTATCAGCAT	PTPN22	ENSG00000134242.16	transcript	ENST00000359785.10	protein_coding	1/20			chr1	TogoVar
PTPN2_chr18_12787152_12889237	12815085	AAAATAAA others(5): Show AAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01891.hp1 HG01891.hp2 others(7): Show HG01167.hp2 HG01891.hp1 HG01891.hp2 HG01952.hp1 HG02717.hp1 HG02896.hp2 HG02897.hp1 HG03041.hp2 HG03225.hp1 HG03453.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0010 a0001c0001t0027 others(2): Show a0001c0001t0001 a0001c0001t0010 a0001c0001t0027 a0001c0001t0028 a0003c0003t0005	a0001c0001t0001g0086 a0001c0001t0010g0103 a0001c0001t0010g0104 others(7): Show a0001c0001t0001g0086 a0001c0001t0010g0103 a0001c0001t0010g0104 a0001c0001t0010g0105 a0001c0001t0027g0271 a0001c0001t0028g0193 a0003c0003t0005g0088 a0003c0003t0005g0089 a0003c0003t0005g0093 a0003c0003t0005g0097	10	370	0.0270	-12	c.706 others(27): Show c.706-742_706-731delATTTATTTATTT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	6/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12852191	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01169.hp2 HG02451.hp2 others(3): Show HG01167.hp1 HG01169.hp2 HG02451.hp2 HG02809.hp2 HG03130.hp2 NA18522.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0015 a0002c0002t0001 a0001c0001t0015 a0002c0002t0001	a0001c0001t0015g0106 a0002c0002t0001g0098 a0002c0002t0001g0099 others(3): Show a0001c0001t0015g0106 a0002c0002t0001g0098 a0002c0002t0001g0099 a0002c0002t0001g0100 a0002c0002t0001g0101 a0002c0002t0001g0102	6	370	0.0162	-12	c.160 others(29): Show c.160+6961_160+6972delGTGTGTGTGTGT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	2/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870429	ATATATAT others(5): Show ATATATATATGTG	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00741.hp2 HG01975.hp1 HG00140.hp2 HG00741.hp2 HG01975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0143 a0001c0001t0001g0149 a0001c0001t0005g0269 a0001c0001t0001g0143 a0001c0001t0001g0149 a0001c0001t0005g0269	3	370	0.0081	-12	c.70- others(29): Show c.70-11187_70-11176delCACATATATATA	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870439	GTGTATAT others(5): Show GTGTATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00323.hp2 HG00733.hp2 others(4): Show HG00099.hp2 HG00323.hp2 HG00733.hp2 HG02135.hp1 HG03704.hp2 NA18956.hp2 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(1): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0011	a0001c0001t0002g0119 a0001c0001t0003g0117 a0001c0001t0004g0107 others(4): Show a0001c0001t0002g0119 a0001c0001t0003g0117 a0001c0001t0004g0107 a0001c0001t0004g0123 a0001c0001t0004g0124 a0001c0001t0004g0130 a0001c0001t0011g0108	7	370	0.0189	-12	c.70- others(29): Show c.70-11197_70-11186delTATATATATACA	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870454	TATATATA others(5): Show TATATATATAGAG	T T	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0230 a0001c0001t0001g0230	1	370	0.0027	-12	c.70- others(29): Show c.70-11212_70-11201delCTCTATATATAT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870458	TATATAGA others(5): Show TATATAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0086 a0001c0001t0001g0086	1	370	0.0027	-12	c.70- others(29): Show c.70-11216_70-11205delCTCTCTCTATAT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870462	TAGAGAGA others(5): Show TAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG03942.hp2 HG03942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0081 a0001c0001t0002g0081	1	370	0.0027	-12	c.70- others(29): Show c.70-11220_70-11209delCTCTCTCTCTCT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN3_chr9_109370700_109503307	109377395	TACACACA others(5): Show TACACACACACAC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00323.hp1 HG01099.hp2 HG01928.hp2 others(5): Show HG00323.hp1 HG01099.hp2 HG01928.hp2 HG01978.hp2 HG02004.hp2 HG02630.hp2 NA18612.hp2 NA20805.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0004c0009 a0001c0001 a0002c0002 a0004c0009	a0001c0001t0014 a0001c0001t0031 a0002c0002t0014 others(1): Show a0001c0001t0014 a0001c0001t0031 a0002c0002t0014 a0004c0009t0014	a0001c0001t0014g0107 a0001c0001t0014g0109 a0001c0001t0014g0184 others(5): Show a0001c0001t0014g0107 a0001c0001t0014g0109 a0001c0001t0014g0184 a0001c0001t0014g0221 a0001c0001t0031g0048 a0002c0002t0014g0090 a0002c0002t0014g0146 a0004c0009t0014g0182	8	290	0.0276	-12	c.21 others(23): Show c.2149_*2160delGTGTGTGTGTGT	PTPN3	ENSG00000070159.14	transcript	ENST00000374541.4	protein_coding	26/26	2149		chr9	TogoVar
PTPN3_chr9_109370700_109503307	109380214	AATCTATC others(5): Show AATCTATCTATCT	A A	intron_variant intron_variant	MODIFIER	HG01975.hp2 HG01993.hp1 HG02015.hp1 others(2): Show HG01975.hp2 HG01993.hp1 HG02015.hp1 HG02622.hp1 NA18941.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0001c0001t0009 a0002c0002t0003 others(1): Show a0001c0001t0003 a0001c0001t0009 a0002c0002t0003 a0002c0002t0006	a0001c0001t0003g0142 a0001c0001t0003g0189 a0001c0001t0009g0134 others(2): Show a0001c0001t0003g0142 a0001c0001t0003g0189 a0001c0001t0009g0134 a0002c0002t0003g0087 a0002c0002t0006g0086	5	290	0.0172	-12	c.266 others(29): Show c.2665-593_2665-582delAGATAGATAGAT	PTPN3	ENSG00000070159.14	transcript	ENST00000374541.4	protein_coding	25/25			chr9	TogoVar
PTPN3_chr9_109370700_109503307	109415065	TCCGTCCA others(5): Show TCCGTCCATCCAA	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00673.hp2 HG01258.hp1 others(15): Show HG00408.hp1 HG00673.hp2 HG01258.hp1 HG01346.hp2 HG01975.hp1 HG02056.hp2 NA18952.hp1 NA18960.hp2 NA18972.hp1 NA18983.hp2 NA18985.hp1 NA18987.hp2 NA18990.hp1 NA19010.hp1 NA19054.hp1 NA19058.hp2 NA19060.hp1 NA19064.hp2	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0008	a0001c0005 a0002c0002 a0002c0003 others(2): Show a0001c0005 a0002c0002 a0002c0003 a0005c0008 a0008c0014	a0001c0005t0008 a0002c0002t0008 a0002c0003t0008 others(4): Show a0001c0005t0008 a0002c0002t0008 a0002c0003t0008 a0002c0003t0016 a0002c0003t0029 a0005c0008t0008 a0008c0014t0016	a0001c0005t0008g0213 a0001c0005t0008g0214 a0001c0005t0008g0215 others(15): Show a0001c0005t0008g0213 a0001c0005t0008g0214 a0001c0005t0008g0215 a0001c0005t0008g0220 a0002c0002t0008g0011 a0002c0003t0008g0017 a0002c0003t0008g0018 a0002c0003t0008g0021 a0002c0003t0008g0037 a0002c0003t0008g0088 a0002c0003t0016g0026 a0002c0003t0016g0039 a0002c0003t0016g0105 a0002c0003t0029g0019 a0002c0003t0029g0110 a0005c0008t0008g0035 a0005c0008t0008g0036 a0008c0014t0016g0022	18	290	0.0621	-12	c.131 others(31): Show c.1314-4662_1314-4651delTTGGATGGACGG	PTPN3	ENSG00000070159.14	transcript	ENST00000374541.4	protein_coding	14/25			chr9	TogoVar
PTPN3_chr9_109370700_109503307	109465706	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0002 a0002	a0002c0016 a0002c0016	a0002c0016t0002 a0002c0016t0002	a0002c0016t0002g0122 a0002c0016t0002g0122	1	290	0.0035	-12	c.-17 others(29): Show c.-17-2267_-17-2256delTTTTTTTTTTTT	PTPN3	ENSG00000070159.14	transcript	ENST00000374541.4	protein_coding	1/25			chr9	TogoVar
PTPN3_chr9_109370700_109503307	109480895	AATGGATG others(5): Show AATGGATGGATGG	A A	intron_variant intron_variant	MODIFIER	NA18955.hp1 NA18955.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0013 a0002c0002t0013	a0002c0002t0013g0249 a0002c0002t0013g0249	1	290	0.0035	-12	c.-18 others(31): Show c.-18+17312_-18+17323delCCATCCATCCAT	PTPN3	ENSG00000070159.14	transcript	ENST00000374541.4	protein_coding	1/25			chr9	TogoVar
PTPN4_chr2_119754922_119989899	119766472	GTGTGTGT others(5): Show GTGTGTGTGTGTC	G G	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02155.hp1 HG02257.hp1 others(7): Show HG00639.hp2 HG02155.hp1 HG02257.hp1 HG02572.hp1 HG02895.hp1 HG02896.hp2 HG03209.hp2 NA18962.hp2 NA19007.hp2 NA19240.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0001c0001t0006 a0001c0001t0021 others(3): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0021 a0001c0001t0025 a0002c0002t0016 a0002c0002t0035	a0001c0001t0002g0155 a0001c0001t0002g0196 a0001c0001t0002g0217 others(7): Show a0001c0001t0002g0155 a0001c0001t0002g0196 a0001c0001t0002g0217 a0001c0001t0006g0166 a0001c0001t0006g0219 a0001c0001t0006g0220 a0001c0001t0021g0218 a0001c0001t0025g0195 a0002c0002t0016g0246 a0002c0002t0035g0250	10	252	0.0397	-12	c.-18 others(29): Show c.-18+6100_-18+6111delCTGTGTGTGTGT	PTPN4	ENSG00000088179.9	transcript	ENST00000263708.7	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr2	TogoVar
PTPN4_chr2_119754922_119989899	119775802	GATATCTA others(5): Show GATATCTATATCT	G G	intron_variant intron_variant	MODIFIER	NA18946.hp2 NA18968.hp2 NA18946.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0124 a0001c0001t0002g0198 a0001c0001t0001g0124 a0001c0001t0002g0198	2	252	0.0079	-12	c.-18 others(31): Show c.-18+15447_-18+15458delCTATATCTATAT	PTPN4	ENSG00000088179.9	transcript	ENST00000263708.7	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr2	TogoVar
PTPN4_chr2_119754922_119989899	119914248	ATTTTTTT others(5): Show ATTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00741.hp2 HG01346.hp1 HG00738.hp1 HG00741.hp2 HG01346.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0015 a0002c0003t0027 a0002c0003t0015 a0002c0003t0027	a0002c0003t0015g0024 a0002c0003t0015g0025 a0002c0003t0027g0026 a0002c0003t0015g0024 a0002c0003t0015g0025 a0002c0003t0027g0026	3	252	0.0119	-12	c.765 others(27): Show c.765-914_765-903delTTTTTTTTTTTT	PTPN4	ENSG00000088179.9	transcript	ENST00000263708.7	protein_coding	10/26		INFO_REALIGN_3_PRIME	chr2	TogoVar
PTPN4_chr2_119754922_119989899	119969552	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA19080.hp2 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0201 a0001c0001t0002g0201	1	252	0.0040	-12	c.269 others(31): Show c.2694+1593_2694+1604delTTTTTTTTTTTT	PTPN4	ENSG00000088179.9	transcript	ENST00000263708.7	protein_coding	26/26		INFO_REALIGN_3_PRIME	chr2	TogoVar
PTPN5_chr11_18722928_18796798	18766123	TCATCATC others(5): Show TCATCATCATCAC	T T	intron_variant intron_variant	MODIFIER	HG02015.hp1 NA18946.hp2 NA18978.hp1 others(1): Show HG02015.hp1 NA18946.hp2 NA18978.hp1 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0016 a0001c0001t0001 a0001c0001t0016	a0001c0001t0001g0049 a0001c0001t0001g0295 a0001c0001t0001g0331 others(1): Show a0001c0001t0001g0049 a0001c0001t0001g0295 a0001c0001t0001g0331 a0001c0001t0016g0375	4	388	0.0103	-12	c.21- others(25): Show c.21-252_21-241delGTGATGATGATG	PTPN5	ENSG00000110786.18	transcript	ENST00000358540.7	protein_coding	2/14			chr11	TogoVar
PTPN9_chr15_75458251_75584315	75499399	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0197 a0001c0001t0012g0197	1	326	0.0031	-12	c.968 others(29): Show c.968+6264_968+6275delAAAAAAAAAAAA	PTPN9	ENSG00000169410.11	transcript	ENST00000618819.5	protein_coding	7/12			chr15	TogoVar

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