Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PTPN9_chr15_75458251_75584315	75522388	CTTTTTTG others(5): Show CTTTTTTGTGGGG	C C	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0084 a0001c0001t0029g0084	1	326	0.0031	-12	c.422 others(27): Show c.422+721_422+732delCCCCACAAAAAA	PTPN9	ENSG00000169410.11	transcript	ENST00000618819.5	protein_coding	4/12			chr15	TogoVar
PTPN9_chr15_75458251_75584315	75540555	AAAAAAAA others(5): Show AAAAAAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00323.hp1 others(25): Show HG00099.hp2 HG00140.hp2 HG00323.hp1 HG00621.hp2 HG00639.hp1 HG00642.hp1 HG00735.hp1 HG00738.hp2 HG00741.hp1 HG01123.hp1 HG01361.hp2 HG01496.hp2 HG01884.hp1 HG01891.hp2 HG02004.hp2 HG02055.hp2 HG02165.hp2 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02970.hp2 HG02976.hp2 HG03239.hp2 HG03927.hp2 HG04115.hp1 NA20129.hp2 NA20300.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0006 a0001c0001 a0004c0006	a0001c0001t0006 a0001c0001t0011 a0001c0001t0020 others(5): Show a0001c0001t0006 a0001c0001t0011 a0001c0001t0020 a0001c0001t0021 a0001c0001t0035 a0001c0001t0042 a0001c0001t0044 a0004c0006t0011	a0001c0001t0006g0297 a0001c0001t0006g0302 a0001c0001t0006g0303 others(25): Show a0001c0001t0006g0297 a0001c0001t0006g0302 a0001c0001t0006g0303 a0001c0001t0006g0305 a0001c0001t0006g0306 a0001c0001t0006g0307 a0001c0001t0006g0308 a0001c0001t0006g0309 a0001c0001t0006g0310 a0001c0001t0006g0311 a0001c0001t0006g0313 a0001c0001t0006g0314 a0001c0001t0006g0316 a0001c0001t0006g0318 a0001c0001t0006g0320 a0001c0001t0011g0279 a0001c0001t0011g0281 a0001c0001t0011g0282 a0001c0001t0011g0283 a0001c0001t0011g0284 a0001c0001t0020g0315 a0001c0001t0020g0317 a0001c0001t0021g0312 a0001c0001t0021g0319 a0001c0001t0035g0304 a0001c0001t0042g0322 a0001c0001t0044g0321 a0004c0006t0011g0280	28	326	0.0859	-12	c.64- others(29): Show c.64-13306_64-13295delCTTTCTTTTTTT	PTPN9	ENSG00000169410.11	transcript	ENST00000618819.5	protein_coding	1/12			chr15	TogoVar
PTPN9_chr15_75458251_75584315	75565109	TATAATAA others(5): Show TATAATAATAATA	T T	intron_variant intron_variant	MODIFIER	NA18977.hp1 NA18977.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0151 a0001c0001t0001g0151	1	326	0.0031	-12	c.63+ others(29): Show c.63+13593_63+13604delTATTATTATTAT	PTPN9	ENSG00000169410.11	transcript	ENST00000618819.5	protein_coding	1/12			chr15	TogoVar
PTPN9_chr15_75458251_75584315	75582687	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03831.hp1 NA19009.hp1 HG03831.hp1 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0027 a0001c0001t0001 a0001c0001t0027	a0001c0001t0001g0093 a0001c0001t0027g0094 a0001c0001t0001g0093 a0001c0001t0027g0094	2	326	0.0061	-12	c.-39 others(23): Show c.-3923_-3912delAAAAAAAAAAAA	PTPN9	ENSG00000169410.11	transcript	ENST00000618819.5	protein_coding		3373		chr15	TogoVar
PTPRA_chr20_2868481_3043669	2928007	CTCAGTCA others(5): Show CTCAGTCAATCAA	C C	intron_variant intron_variant	MODIFIER	NA18974.hp1 NA18981.hp2 NA18995.hp2 others(1): Show NA18974.hp1 NA18981.hp2 NA18995.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0067 others(1): Show a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0067 a0001c0001t0001g0068	4	356	0.0112	-12	c.-50 others(29): Show c.-50+4737_-50+4748delAGTCAATCAATC	PTPRA	ENSG00000132670.21	transcript	ENST00000399903.7	protein_coding	2/23		INFO_REALIGN_3_PRIME	chr20	TogoVar
PTPRA_chr20_2868481_3043669	2956661	AAAATAAA others(5): Show AAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02055.hp2 HG02280.hp2 others(11): Show HG01891.hp1 HG02055.hp2 HG02280.hp2 HG02451.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02717.hp1 HG02895.hp1 HG03225.hp1 NA18522.hp2 NA18906.hp1 NA19240.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0001 a0002c0005t0001	a0002c0005t0001g0135 a0002c0005t0001g0136 a0002c0005t0001g0137 others(11): Show a0002c0005t0001g0135 a0002c0005t0001g0136 a0002c0005t0001g0137 a0002c0005t0001g0138 a0002c0005t0001g0159 a0002c0005t0001g0160 a0002c0005t0001g0161 a0002c0005t0001g0162 a0002c0005t0001g0163 a0002c0005t0001g0164 a0002c0005t0001g0166 a0002c0005t0001g0168 a0002c0005t0001g0169 a0002c0005t0001g0170	14	356	0.0393	-12	c.-6- others(27): Show c.-6-7586_-6-7575delAAATAAATAAAT	PTPRA	ENSG00000132670.21	transcript	ENST00000399903.7	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr20	TogoVar
PTPRA_chr20_2868481_3043669	2985884	CTTGTTTG others(5): Show CTTGTTTGTTTGT	C C	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG02602.hp1 NA18952.hp2 others(8): Show HG01123.hp1 HG02602.hp1 NA18952.hp2 NA18953.hp2 NA18980.hp1 NA18985.hp1 NA18985.hp2 NA18995.hp1 NA19060.hp2 NA19078.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0003 a0001c0006t0001 a0001c0001t0003 a0001c0006t0001	a0001c0001t0003g0229 a0001c0006t0001g0001 a0001c0006t0001g0210 others(8): Show a0001c0001t0003g0229 a0001c0006t0001g0001 a0001c0006t0001g0210 a0001c0006t0001g0211 a0001c0006t0001g0212 a0001c0006t0001g0213 a0001c0006t0001g0214 a0001c0006t0001g0215 a0001c0006t0001g0216 a0001c0006t0001g0217 a0001c0006t0001g0273	11	356	0.0309	-12	c.443 others(27): Show c.443-850_443-839delGTTTGTTTGTTT	PTPRA	ENSG00000132670.21	transcript	ENST00000399903.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr20	TogoVar
PTPRB_chr12_70510870_70642429	70524832	CATATATG others(5): Show CATATATGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG01167.hp2 NA20129.hp2 HG01167.hp2 NA20129.hp2	a0004 a0018 a0004 a0018	a0004c0021 a0018c0089 a0004c0021 a0018c0089	a0004c0021t0042 a0018c0089t0005 a0004c0021t0042 a0018c0089t0005	a0004c0021t0042g0225 a0018c0089t0005g0088 a0004c0021t0042g0225 a0018c0089t0005g0088	2	300	0.0067	-12	c.650 others(29): Show c.6505-253_6505-242delACACACATATAT	PTPRB	ENSG00000127329.16	transcript	ENST00000334414.11	protein_coding	32/33			chr12	TogoVar
PTPRB_chr12_70510870_70642429	70524855	GTATATGT others(5): Show GTATATGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0038 a0038	a0038c0045 a0038c0045	a0038c0045t0001 a0038c0045t0001	a0038c0045t0001g0183 a0038c0045t0001g0183	1	300	0.0033	-12	c.650 others(29): Show c.6505-276_6505-265delTACACACATATA	PTPRB	ENSG00000127329.16	transcript	ENST00000334414.11	protein_coding	32/33			chr12	TogoVar
PTPRB_chr12_70510870_70642429	70548340	TCTCTCTC others(5): Show TCTCTCTCACACA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01123.hp1 HG01167.hp2 others(4): Show HG00099.hp1 HG01123.hp1 HG01167.hp2 HG01256.hp2 HG01258.hp1 HG01993.hp2 NA20805.hp2	a0001 a0003 a0004 others(3): Show a0001 a0003 a0004 a0005 a0018 a0020	a0001c0001 a0003c0014 a0004c0022 others(3): Show a0001c0001 a0003c0014 a0004c0022 a0005c0004 a0018c0089 a0020c0084	a0001c0001t0005 a0003c0014t0005 a0004c0022t0005 others(3): Show a0001c0001t0005 a0003c0014t0005 a0004c0022t0005 a0005c0004t0005 a0018c0089t0005 a0020c0084t0005	a0001c0001t0005g0082 a0003c0014t0005g0011 a0004c0022t0005g0154 others(4): Show a0001c0001t0005g0082 a0003c0014t0005g0011 a0004c0022t0005g0154 a0004c0022t0005g0155 a0005c0004t0005g0165 a0018c0089t0005g0088 a0020c0084t0005g0113	7	300	0.0233	-12	c.538 others(31): Show c.5388-3689_5388-3678delTGTGTGAGAGAG	PTPRB	ENSG00000127329.16	transcript	ENST00000334414.11	protein_coding	21/33			chr12	TogoVar
PTPRB_chr12_70510870_70642429	70564843	AAATAATA others(5): Show AAATAATAATAAT	A A	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG03139.hp1 HG03669.hp2 others(5): Show HG01358.hp2 HG03139.hp1 HG03669.hp2 HG06807.hp1 NA18945.hp1 NA18956.hp1 NA18965.hp2 NA19043.hp1	a0001 a0002 a0005 others(2): Show a0001 a0002 a0005 a0012 a0021	a0001c0002 a0002c0007 a0005c0006 others(3): Show a0001c0002 a0002c0007 a0005c0006 a0005c0035 a0012c0043 a0021c0082	a0001c0002t0001 a0002c0007t0005 a0005c0006t0001 others(3): Show a0001c0002t0001 a0002c0007t0005 a0005c0006t0001 a0005c0035t0002 a0012c0043t0001 a0021c0082t0002	a0001c0002t0001g0002 a0002c0007t0005g0118 a0005c0006t0001g0162 others(4): Show a0001c0002t0001g0002 a0002c0007t0005g0118 a0005c0006t0001g0162 a0005c0006t0001g0163 a0005c0035t0002g0168 a0012c0043t0001g0081 a0021c0082t0002g0077	8	300	0.0267	-12	c.390 others(31): Show c.3904+1580_3904+1591delATTATTATTATT	PTPRB	ENSG00000127329.16	transcript	ENST00000334414.11	protein_coding	15/33			chr12	TogoVar
PTPRB_chr12_70510870_70642429	70568434	ACTACAGG others(5): Show ACTACAGGCGTCT	A A	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01123.hp1 HG01358.hp2 others(9): Show HG00741.hp2 HG01123.hp1 HG01358.hp2 HG02074.hp2 HG02970.hp2 HG03516.hp1 HG04184.hp2 NA18522.hp1 NA18942.hp2 NA18953.hp1 NA18998.hp1 NA19078.hp2	a0010 a0012 a0016 others(3): Show a0010 a0012 a0016 a0020 a0030 a0035	a0010c0026 a0010c0073 a0012c0043 others(6): Show a0010c0026 a0010c0073 a0012c0043 a0012c0101 a0016c0052 a0016c0053 a0020c0084 a0030c0098 a0035c0057	a0010c0026t0003 a0010c0026t0004 a0010c0026t0006 others(8): Show a0010c0026t0003 a0010c0026t0004 a0010c0026t0006 a0010c0073t0002 a0012c0043t0001 a0012c0101t0001 a0016c0052t0001 a0016c0053t0001 a0020c0084t0005 a0030c0098t0011 a0035c0057t0001	a0010c0026t0003g0097 a0010c0026t0004g0287 a0010c0026t0006g0233 others(9): Show a0010c0026t0003g0097 a0010c0026t0004g0287 a0010c0026t0006g0233 a0010c0073t0002g0021 a0012c0043t0001g0081 a0012c0043t0001g0256 a0012c0101t0001g0116 a0016c0052t0001g0209 a0016c0053t0001g0182 a0020c0084t0005g0113 a0030c0098t0011g0240 a0035c0057t0001g0216	12	300	0.0400	-12	c.363 others(31): Show c.3634+1229_3634+1240delAGACGCCTGTAG	PTPRB	ENSG00000127329.16	transcript	ENST00000334414.11	protein_coding	14/33			chr12	TogoVar
PTPRB_chr12_70510870_70642429	70626292	CATCCATC others(5): Show CATCCATCTATCT	C C	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01071.hp2 HG01074.hp1 others(11): Show HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01109.hp2 HG01175.hp1 HG01256.hp2 HG01258.hp1 HG01517.hp2 HG02004.hp1 HG02257.hp1 HG02451.hp2 NA18941.hp1 NA18957.hp2 NA18969.hp2	a0001 a0003 a0004 others(3): Show a0001 a0003 a0004 a0005 a0006 a0033	a0001c0001 a0001c0002 a0001c0020 others(8): Show a0001c0001 a0001c0002 a0001c0020 a0003c0003 a0004c0008 a0004c0013 a0004c0022 a0004c0054 a0005c0033 a0006c0009 a0033c0109	a0001c0001t0005 a0001c0002t0001 a0001c0002t0015 others(10): Show a0001c0001t0005 a0001c0002t0001 a0001c0002t0015 a0001c0020t0010 a0003c0003t0001 a0003c0003t0007 a0004c0008t0002 a0004c0013t0001 a0004c0022t0005 a0004c0054t0036 a0005c0033t0002 a0006c0009t0003 a0033c0109t0030	a0001c0001t0005g0130 a0001c0002t0001g0129 a0001c0002t0015g0128 others(11): Show a0001c0001t0005g0130 a0001c0002t0001g0129 a0001c0002t0015g0128 a0001c0020t0010g0134 a0003c0003t0001g0231 a0003c0003t0007g0252 a0004c0008t0002g0153 a0004c0013t0001g0269 a0004c0022t0005g0154 a0004c0022t0005g0155 a0004c0054t0036g0268 a0005c0033t0002g0017 a0006c0009t0003g0156 a0033c0109t0030g0266	14	300	0.0467	-12	c.452 others(29): Show c.452-3658_452-3647delAGATAGATGGAT	PTPRB	ENSG00000127329.16	transcript	ENST00000334414.11	protein_coding	2/33			chr12	TogoVar
PTPRB_chr12_70510870_70642429	70626296	CATCTATC others(5): Show CATCTATCTATCT	C C	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG03927.hp2 NA18959.hp2 others(3): Show HG00642.hp1 HG03927.hp2 NA18959.hp2 NA19011.hp2 NA19060.hp2 NA19240.hp2	a0002 a0003 a0011 others(2): Show a0002 a0003 a0011 a0024 a0026	a0002c0012 a0002c0025 a0003c0014 others(3): Show a0002c0012 a0002c0025 a0003c0014 a0011c0075 a0024c0107 a0026c0106	a0002c0012t0035 a0002c0025t0001 a0003c0014t0002 others(3): Show a0002c0012t0035 a0002c0025t0001 a0003c0014t0002 a0011c0075t0002 a0024c0107t0001 a0026c0106t0001	a0002c0012t0035g0109 a0002c0025t0001g0298 a0003c0014t0002g0137 others(3): Show a0002c0012t0035g0109 a0002c0025t0001g0298 a0003c0014t0002g0137 a0011c0075t0002g0013 a0024c0107t0001g0108 a0026c0106t0001g0296	6	300	0.0200	-12	c.452 others(29): Show c.452-3662_452-3651delAGATAGATAGAT	PTPRB	ENSG00000127329.16	transcript	ENST00000334414.11	protein_coding	2/33			chr12	TogoVar
PTPRC_chr1_198634040_198762476	198642895	TCTTTCTT others(5): Show TCTTTCTTTCTTC	T T	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp1 HG01517.hp2 others(6): Show HG01167.hp2 HG01169.hp1 HG01517.hp2 HG03453.hp1 HG03831.hp2 HG06807.hp2 NA18986.hp1 NA19063.hp2 NA19086.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0002 a0001c0001t0001 a0002c0003t0002	a0001c0001t0001g0002 a0001c0001t0001g0051 a0001c0001t0001g0111 others(5): Show a0001c0001t0001g0002 a0001c0001t0001g0051 a0001c0001t0001g0111 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0239 a0001c0001t0001g0248 a0002c0003t0002g0110	9	296	0.0304	-12	c.73+ others(27): Show c.73+3566_73+3577delCCTTTCTTTCTT	PTPRC	ENSG00000081237.21	transcript	ENST00000442510.8	protein_coding	2/32		INFO_REALIGN_3_PRIME	chr1	TogoVar
PTPRC_chr1_198634040_198762476	198660013	TTGTCCAT others(5): Show TTGTCCATATATA	T T	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02970.hp1 HG02818.hp1 HG02970.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0005 a0001c0002t0002 a0001c0002t0005	a0001c0002t0002g0252 a0001c0002t0005g0251 a0001c0002t0002g0252 a0001c0002t0005g0251	2	296	0.0068	-12	c.73+ others(29): Show c.73+20686_73+20697delGTCCATATATAT	PTPRC	ENSG00000081237.21	transcript	ENST00000442510.8	protein_coding	2/32		INFO_REALIGN_3_PRIME	chr1	TogoVar
PTPRD_chr9_8309246_10618002	8373612	GGTGTGTG others(5): Show GGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01099.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0013 a0001c0001t0002g0013	1	34	0.0294	-12	c.466 others(31): Show c.4661+2312_4661+2323delACACACACACAC	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	39/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8373804	TTATGTAT others(5): Show TTATGTATGTATG	T T	intron_variant intron_variant	MODIFIER	HG03834.hp2 HG03834.hp2	a0002 a0002	a0002c0009 a0002c0009	a0002c0009t0006 a0002c0009t0006	a0002c0009t0006g0007 a0002c0009t0006g0007	1	34	0.0294	-12	c.466 others(31): Show c.4661+2120_4661+2131delCATACATACATA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	39/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8373864	GTCTATCT others(5): Show GTCTATCTATCTA	G G	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG02683.hp2 HG01981.hp1 HG02683.hp2	a0001 a0003 a0001 a0003	a0001c0006 a0003c0008 a0001c0006 a0003c0008	a0001c0006t0026 a0003c0008t0008 a0001c0006t0026 a0003c0008t0008	a0001c0006t0026g0034 a0003c0008t0008g0003 a0001c0006t0026g0034 a0003c0008t0008g0003	2	34	0.0588	-12	c.466 others(31): Show c.4661+2060_4661+2071delTAGATAGATAGA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	39/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8373913	TCTACCTA others(5): Show TCTACCTACCTAC	T T	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02559.hp1 HG02559.hp2 others(3): Show HG01109.hp2 HG02559.hp1 HG02559.hp2 HG02622.hp2 HG03834.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0001c0011	a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 others(2): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 a0001c0005t0001 a0001c0011t0005	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0002t0001g0009 others(3): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0002t0001g0009 a0001c0002t0003g0024 a0001c0005t0001g0019 a0001c0011t0005g0021	6	34	0.1765	-12	c.466 others(31): Show c.4661+2011_4661+2022delGTAGGTAGGTAG	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	39/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8374114	CTGTGTGT others(5): Show CTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02622.hp1 HG03139.hp2 others(2): Show HG02559.hp2 HG02622.hp1 HG03139.hp2 NA19030.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(2): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0007	a0001c0001t0013 a0001c0002t0005 a0001c0004t0018 others(2): Show a0001c0001t0013 a0001c0002t0005 a0001c0004t0018 a0001c0005t0001 a0001c0007t0021	a0001c0001t0013g0022 a0001c0002t0005g0025 a0001c0004t0018g0015 others(2): Show a0001c0001t0013g0022 a0001c0002t0005g0025 a0001c0004t0018g0015 a0001c0005t0001g0019 a0001c0007t0021g0002	5	34	0.1471	-12	c.466 others(31): Show c.4661+1810_4661+1821delCACACACACACA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	39/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8414928	GGGGAGAG others(5): Show GGGGAGAGAGAGA	G G	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0023 a0001c0003t0023	a0001c0003t0023g0031 a0001c0003t0023g0031	1	34	0.0294	-12	c.408 others(33): Show c.4087-10280_4087-10269delTCTCTCTCTCCC	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	35/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8439935	ATTTTTTT others(5): Show ATTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG03139.hp1 HG03139.hp2 others(2): Show HG02257.hp2 HG03139.hp1 HG03139.hp2 NA19030.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0002t0005 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0005 a0001c0003t0007 a0001c0004t0018	a0001c0001t0001g0004 a0001c0001t0002g0018 a0001c0002t0005g0025 others(2): Show a0001c0001t0001g0004 a0001c0001t0002g0018 a0001c0002t0005g0025 a0001c0003t0007g0029 a0001c0004t0018g0015	5	34	0.1471	-12	c.398 others(31): Show c.3989-3258_3989-3247delAAAAAAAAAAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	34/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8516798	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01109.hp1 HG02622.hp1 others(4): Show HG00642.hp2 HG01109.hp1 HG02622.hp1 HG03579.hp1 HG03579.hp2 NA19240.hp2 NA21309.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0007 others(2): Show a0001c0001 a0001c0002 a0001c0007 a0001c0014 a0005c0015	a0001c0001t0013 a0001c0001t0014 a0001c0001t0022 others(4): Show a0001c0001t0013 a0001c0001t0014 a0001c0001t0022 a0001c0002t0015 a0001c0007t0021 a0001c0014t0025 a0005c0015t0010	a0001c0001t0013g0022 a0001c0001t0014g0008 a0001c0001t0022g0012 others(4): Show a0001c0001t0013g0022 a0001c0001t0014g0008 a0001c0001t0022g0012 a0001c0002t0015g0010 a0001c0007t0021g0002 a0001c0014t0025g0033 a0005c0015t0010g0026	7	34	0.2059	-12	c.154 others(31): Show c.1543+1038_1543+1049delAAAAAAAAAAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	21/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8566100	ATGTGTGT others(5): Show ATGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0012 a0001c0001t0022g0012	1	34	0.0294	-12	c.353 others(31): Show c.353-37333_353-37322delCACACACACACA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	14/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8632137	GTGTGTGT others(5): Show GTGTGTGTGTGTC	G G	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0018 a0001c0004t0018	a0001c0004t0018g0015 a0001c0004t0018g0015	1	34	0.0294	-12	c.352 others(29): Show c.352+1168_352+1179delGACACACACACA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	14/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8675538	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0015 a0001c0002t0015	a0001c0002t0015g0010 a0001c0002t0015g0010	1	34	0.0294	-12	c.65- others(29): Show c.65-38706_65-38695delTTTTTTTTTTTT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	12/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8743797	CAATAATA others(5): Show CAATAATAATAAT	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG03139.hp1 HG03225.hp1 others(3): Show HG02055.hp1 HG03139.hp1 HG03225.hp1 HG03579.hp2 NA19240.hp1 NA19240.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0003 a0001c0007 others(3): Show a0001c0001 a0001c0003 a0001c0007 a0001c0010 a0001c0017 a0004c0016	a0001c0001t0014 a0001c0003t0007 a0001c0007t0021 others(3): Show a0001c0001t0014 a0001c0003t0007 a0001c0007t0021 a0001c0010t0017 a0001c0017t0002 a0004c0016t0020	a0001c0001t0014g0008 a0001c0003t0007g0029 a0001c0007t0021g0002 others(3): Show a0001c0001t0014g0008 a0001c0003t0007g0029 a0001c0007t0021g0002 a0001c0010t0017g0016 a0001c0017t0002g0005 a0004c0016t0020g0011	6	34	0.1765	-12	c.-10 others(31): Show c.-103-9863_-103-9852delATTATTATTATT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	11/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8833711	TATATACA others(5): Show TATATACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0009 a0001c0002t0001g0009	1	34	0.0294	-12	c.-10 others(33): Show c.-103-99777_-103-99766delGTGTGTGTATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	11/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8892533	ATATATAT others(5): Show ATATATATGTGTG	A A	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	34	0.0294	-12	c.-10 others(35): Show c.-104+126152_-104+126163delCACACATATATA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	11/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8934466	TATATATA others(5): Show TATATATATATAA	T T	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	34	0.0294	-12	c.-10 others(33): Show c.-104+84219_-104+84230delTTATATATATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	11/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9019327	AGAAAGAA others(5): Show AGAAAGAAAGAAC	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01981.hp2 HG02622.hp1 others(1): Show HG01109.hp1 HG01981.hp2 HG02622.hp1 HG02683.hp1	a0001 a0001	a0001c0001 a0001c0012 a0001c0014 a0001c0001 a0001c0012 a0001c0014	a0001c0001t0013 a0001c0001t0019 a0001c0012t0016 others(1): Show a0001c0001t0013 a0001c0001t0019 a0001c0012t0016 a0001c0014t0025	a0001c0001t0013g0022 a0001c0001t0019g0023 a0001c0012t0016g0028 others(1): Show a0001c0001t0013g0022 a0001c0001t0019g0023 a0001c0012t0016g0028 a0001c0014t0025g0033	4	34	0.1177	-12	c.-14 others(29): Show c.-142-604_-142-593delGTTCTTTCTTTC	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	10/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9030276	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp2 HG02559.hp2 HG02055.hp1 HG02055.hp2 HG02559.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0010 a0001c0002 a0001c0005 a0001c0010	a0001c0002t0009 a0001c0005t0001 a0001c0010t0017 a0001c0002t0009 a0001c0005t0001 a0001c0010t0017	a0001c0002t0009g0017 a0001c0005t0001g0019 a0001c0010t0017g0016 a0001c0002t0009g0017 a0001c0005t0001g0019 a0001c0010t0017g0016	3	34	0.0882	-12	c.-14 others(33): Show c.-142-11553_-142-11542delAAAAAAAAAAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	10/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9188808	TTGTGTGT others(5): Show TTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG03225.hp2 HG01099.hp1 HG03225.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0011 a0001c0003t0004 a0001c0002t0011 a0001c0003t0004	a0001c0002t0011g0030 a0001c0003t0004g0027 a0001c0002t0011g0030 a0001c0003t0004g0027	2	34	0.0588	-12	c.-20 others(31): Show c.-202-5457_-202-5446delCACACACACACA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	9/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9211515	GCACACAC others(5): Show GCACACACACACA	G G	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03579.hp1 HG03139.hp2 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0022 a0001c0002t0005 a0001c0001t0022 a0001c0002t0005	a0001c0001t0022g0012 a0001c0002t0005g0025 a0001c0001t0022g0012 a0001c0002t0005g0025	2	34	0.0588	-12	c.-20 others(33): Show c.-202-28164_-202-28153delTGTGTGTGTGTG	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	9/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9286873	AATATATA others(5): Show AATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02257.hp2 HG01243.hp1 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0002 a0001c0004t0003 a0001c0001t0002 a0001c0004t0003	a0001c0001t0002g0018 a0001c0004t0003g0001 a0001c0001t0002g0018 a0001c0004t0003g0001	2	34	0.0588	-12	c.-20 others(35): Show c.-202-103522_-202-103511delATATATATATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	9/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9328614	CTTGCTTT others(5): Show CTTGCTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0018 a0001c0018	a0001c0018t0004 a0001c0018t0004	a0001c0018t0004g0020 a0001c0018t0004g0020	1	34	0.0294	-12	c.-20 others(33): Show c.-203+68823_-203+68834delAAAAAAAAGCAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	9/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9432047	TATAATAA others(5): Show TATAATAATAATA	T T	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0018 a0001c0001t0002g0018	1	34	0.0294	-12	c.-23 others(33): Show c.-236-34577_-236-34566delTATTATTATTAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	8/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9486150	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01981.hp2 HG01099.hp2 HG01981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0019 a0001c0001t0002 a0001c0001t0019	a0001c0001t0002g0013 a0001c0001t0019g0023 a0001c0001t0002g0013 a0001c0001t0019g0023	2	34	0.0588	-12	c.-23 others(33): Show c.-237+88570_-237+88581delTTTTTTTTTTTT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	8/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9601111	ATGTGTGT others(5): Show ATGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0012 a0001c0013t0012	a0001c0013t0012g0014 a0001c0013t0012g0014	1	34	0.0294	-12	c.-28 others(33): Show c.-286-26342_-286-26331delCACACACACACA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	7/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9613123	TATACATA others(5): Show TATACATACATAC	T T	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0025 a0001c0014t0025	a0001c0014t0025g0033 a0001c0014t0025g0033	1	34	0.0294	-12	c.-28 others(33): Show c.-286-38354_-286-38343delGTATGTATGTAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	7/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9618071	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0025 a0001c0014t0025	a0001c0014t0025g0033 a0001c0014t0025g0033	1	34	0.0294	-12	c.-28 others(33): Show c.-286-43302_-286-43291delTTTTTTTTTTTT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	7/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9631192	CATAAATA others(5): Show CATAAATAAATAA	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0001 a0001c0004t0003g0001	1	34	0.0294	-12	c.-28 others(33): Show c.-286-56423_-286-56412delTTATTTATTTAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	7/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9743759	CACACACA others(5): Show CACACACACACAA	C C	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0018 a0001c0004t0018	a0001c0004t0018g0015 a0001c0004t0018g0015	1	34	0.0294	-12	c.-32 others(31): Show c.-325-9200_-325-9189delTTGTGTGTGTGT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	6/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9760599	TACACACA others(5): Show TACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG03834.hp1 NA19030.hp1 NA19240.hp1 HG03834.hp1 NA19030.hp1 NA19240.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0016 a0001c0001 a0004c0016	a0001c0001t0001 a0001c0001t0024 a0004c0016t0020 a0001c0001t0001 a0001c0001t0024 a0004c0016t0020	a0001c0001t0001g0006 a0001c0001t0024g0032 a0004c0016t0020g0011 a0001c0001t0001g0006 a0001c0001t0024g0032 a0004c0016t0020g0011	3	34	0.0882	-12	c.-32 others(31): Show c.-326+6199_-326+6210delGTGTGTGTGTGT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	6/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9825396	CAGAGAGA others(5): Show CAGAGAGAGAAAG	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp2 HG02055.hp2 others(7): Show HG01243.hp1 HG01243.hp2 HG02055.hp2 HG02559.hp1 HG02559.hp2 HG03139.hp1 HG03225.hp2 HG03579.hp2 NA19030.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0011	a0001c0001t0014 a0001c0001t0024 a0001c0002t0009 others(7): Show a0001c0001t0014 a0001c0001t0024 a0001c0002t0009 a0001c0002t0015 a0001c0003t0004 a0001c0003t0007 a0001c0003t0023 a0001c0004t0003 a0001c0005t0001 a0001c0011t0005	a0001c0001t0014g0008 a0001c0001t0024g0032 a0001c0002t0009g0017 others(7): Show a0001c0001t0014g0008 a0001c0001t0024g0032 a0001c0002t0009g0017 a0001c0002t0015g0010 a0001c0003t0004g0027 a0001c0003t0007g0029 a0001c0003t0023g0031 a0001c0004t0003g0001 a0001c0005t0001g0019 a0001c0011t0005g0021	10	34	0.2941	-12	c.-36 others(33): Show c.-367-58557_-367-58546delCTTTCTCTCTCT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	5/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9964057	CAGGCAGA others(5): Show CAGGCAGAGACGG	C C	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02055.hp2 HG02257.hp1 others(4): Show HG01109.hp1 HG02055.hp2 HG02257.hp1 HG02559.hp1 HG02683.hp2 HG03139.hp1 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0006 others(4): Show a0001c0002 a0001c0003 a0001c0006 a0001c0011 a0001c0014 a0001c0017 a0001c0018	a0001c0002t0009 a0001c0003t0007 a0001c0006t0026 others(4): Show a0001c0002t0009 a0001c0003t0007 a0001c0006t0026 a0001c0011t0005 a0001c0014t0025 a0001c0017t0002 a0001c0018t0004	a0001c0002t0009g0017 a0001c0003t0007g0029 a0001c0006t0026g0034 others(4): Show a0001c0002t0009g0017 a0001c0003t0007g0029 a0001c0006t0026g0034 a0001c0011t0005g0021 a0001c0014t0025g0033 a0001c0017t0002g0005 a0001c0018t0004g0020	7	34	0.2059	-12	c.-47 others(33): Show c.-471-25459_-471-25448delCCGTCTCTGCCT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	4/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9980608	CAAAAAAA others(5): Show CAAAAAAAAACAA	C C	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG02683.hp1 HG03139.hp1 others(1): Show HG01099.hp2 HG02683.hp1 HG03139.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0012 others(1): Show a0001c0001 a0001c0003 a0001c0012 a0001c0017	a0001c0001t0002 a0001c0003t0007 a0001c0012t0016 others(1): Show a0001c0001t0002 a0001c0003t0007 a0001c0012t0016 a0001c0017t0002	a0001c0001t0002g0013 a0001c0003t0007g0029 a0001c0012t0016g0028 others(1): Show a0001c0001t0002g0013 a0001c0003t0007g0029 a0001c0012t0016g0028 a0001c0017t0002g0005	4	34	0.1177	-12	c.-47 others(33): Show c.-471-42010_-471-41999delTTGTTTTTTTTT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	4/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9982475	GGTGTGTG others(5): Show GGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0024 a0001c0002t0003g0024	1	34	0.0294	-12	c.-47 others(33): Show c.-471-43877_-471-43866delACACACACACAC	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	4/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9989016	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02683.hp2 HG02683.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0026 a0001c0006t0026	a0001c0006t0026g0034 a0001c0006t0026g0034	1	34	0.0294	-12	c.-47 others(33): Show c.-472+44690_-472+44701delTTTTTTTTTTTT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	4/45			chr9	TogoVar

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