Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
RAP1GAP2_chr17_2791438_3042741	2801594	GGTATGTG others(5): Show GGTATGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02922.hp1 HG02976.hp2 others(1): Show HG02630.hp1 HG02922.hp1 HG02976.hp2 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0001c0009 others(1): Show a0001c0001 a0001c0004 a0001c0009 a0002c0020	a0001c0001t0009 a0001c0004t0041 a0001c0009t0045 others(1): Show a0001c0001t0009 a0001c0004t0041 a0001c0009t0045 a0002c0020t0019	a0001c0001t0009g0004 a0001c0004t0041g0201 a0001c0009t0045g0200 others(1): Show a0001c0001t0009g0004 a0001c0004t0041g0201 a0001c0009t0045g0200 a0002c0020t0019g0153	4	218	0.0184	-12	c.80+ others(27): Show c.80+1047_80+1058delATGTGTGTGTGT	RAP1GAP2	ENSG00000132359.17	transcript	ENST00000254695.13	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr17	TogoVar
RAP1GAP2_chr17_2791438_3042741	2801597	ATGTGTGT others(5): Show ATGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG02109.hp2 NA18522.hp1 HG01070.hp2 HG02109.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0003 a0001c0005t0030 a0001c0005t0039 a0001c0001t0003 a0001c0005t0030 a0001c0005t0039	a0001c0001t0003g0197 a0001c0005t0030g0196 a0001c0005t0039g0001 a0001c0001t0003g0197 a0001c0005t0030g0196 a0001c0005t0039g0001	3	218	0.0138	-12	c.80+ others(27): Show c.80+1088_80+1099delTGTGTGTGTGTG	RAP1GAP2	ENSG00000132359.17	transcript	ENST00000254695.13	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr17	TogoVar
RAP1GAP2_chr17_2791438_3042741	2815456	ATATTATT others(5): Show ATATTATTATTAT	A A	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0108 a0002c0003t0108	a0002c0003t0108g0102 a0002c0003t0108g0102	1	218	0.0046	-12	c.80+ others(29): Show c.80+14938_80+14949delATTATTATTATT	RAP1GAP2	ENSG00000132359.17	transcript	ENST00000254695.13	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr17	TogoVar
RAP1GAP2_chr17_2791438_3042741	2818293	CTTTATTT others(5): Show CTTTATTTATTTA	C C	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03540.hp2 NA18952.hp2 others(3): Show HG03209.hp1 HG03540.hp2 NA18952.hp2 NA18970.hp1 NA18975.hp1 NA19000.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0018 a0001c0001t0022 a0001c0001t0026 others(3): Show a0001c0001t0018 a0001c0001t0022 a0001c0001t0026 a0001c0001t0038 a0001c0004t0005 a0001c0004t0064	a0001c0001t0018g0181 a0001c0001t0022g0180 a0001c0001t0026g0188 others(3): Show a0001c0001t0018g0181 a0001c0001t0022g0180 a0001c0001t0026g0188 a0001c0001t0038g0190 a0001c0004t0005g0208 a0001c0004t0064g0151	6	218	0.0275	-12	c.80+ others(29): Show c.80+17783_80+17794delATTTATTTATTT	RAP1GAP2	ENSG00000132359.17	transcript	ENST00000254695.13	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr17	TogoVar
RAP1GAP2_chr17_2791438_3042741	2833689	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02451.hp1 HG02451.hp2 others(4): Show HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02647.hp2 HG02818.hp2 HG03139.hp2 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0005 others(3): Show a0001c0001 a0001c0004 a0001c0005 a0001c0009 a0001c0010 a0001c0025	a0001c0001t0029 a0001c0001t0089 a0001c0004t0015 others(4): Show a0001c0001t0029 a0001c0001t0089 a0001c0004t0015 a0001c0005t0127 a0001c0009t0101 a0001c0010t0016 a0001c0025t0058	a0001c0001t0029g0082 a0001c0001t0089g0081 a0001c0004t0015g0005 others(4): Show a0001c0001t0029g0082 a0001c0001t0089g0081 a0001c0004t0015g0005 a0001c0005t0127g0072 a0001c0009t0101g0014 a0001c0010t0016g0089 a0001c0025t0058g0007	7	218	0.0321	-12	c.80+ others(29): Show c.80+33150_80+33161delAAAAAAAAAAAA	RAP1GAP2	ENSG00000132359.17	transcript	ENST00000254695.13	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr17	TogoVar
RAP1GAP2_chr17_2791438_3042741	2860594	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0043 a0001c0007t0043	a0001c0007t0043g0126 a0001c0007t0043g0126	1	218	0.0046	-12	c.81- others(29): Show c.81-44674_81-44663delTTTTTTTTTTTT	RAP1GAP2	ENSG00000132359.17	transcript	ENST00000254695.13	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr17	TogoVar
RAP1GAP2_chr17_2791438_3042741	2995799	GGGGCAGA others(5): Show GGGGCAGAGCCCA	G G	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02647.hp2 HG02630.hp2 HG02647.hp2	a0001 a0003 a0001 a0003	a0001c0025 a0003c0018 a0001c0025 a0003c0018	a0001c0025t0058 a0003c0018t0092 a0001c0025t0058 a0003c0018t0092	a0001c0025t0058g0007 a0003c0018t0092g0096 a0001c0025t0058g0007 a0003c0018t0092g0096	2	218	0.0092	-12	c.104 others(29): Show c.1044+344_1044+355delCAGGGCAGAGCC	RAP1GAP2	ENSG00000132359.17	transcript	ENST00000254695.13	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr17	TogoVar
RAP1GAP2_chr17_2791438_3042741	3028337	TTAATTTT others(5): Show TTAATTTTCACAA	T T	intron_variant intron_variant	MODIFIER	NA18951.hp1 NA18951.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0024 a0002c0003t0024	a0002c0003t0024g0179 a0002c0003t0024g0179	1	218	0.0046	-12	c.210 others(31): Show c.2107+1269_2107+1280delAATTTTCACAAT	RAP1GAP2	ENSG00000132359.17	transcript	ENST00000254695.13	protein_coding	22/24		INFO_REALIGN_3_PRIME	chr17	TogoVar
RAP1GAP_chr1_21591221_21674357	21604843	AGATGGAT others(5): Show AGATGGATGGATG	A A	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0017 a0001c0017	a0001c0017t0001 a0001c0017t0001	a0001c0017t0001g0319 a0001c0017t0001g0319	1	372	0.0027	-12	c.142 others(31): Show c.1428+1211_1428+1222delCATCCATCCATC	RAP1GAP	ENSG00000076864.21	transcript	ENST00000374765.9	protein_coding	18/24			chr1	TogoVar
RAP1GAP_chr1_21591221_21674357	21604917	ATGGGTGG others(5): Show ATGGGTGGATGGG	A A	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00544.hp1 HG00558.hp1 others(81): Show HG00423.hp1 HG00544.hp1 HG00558.hp1 HG00609.hp2 HG00621.hp1 HG00639.hp2 HG00738.hp1 HG00741.hp2 HG01074.hp1 HG01081.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01192.hp2 HG01256.hp1 HG01257.hp1 HG01358.hp1 HG01884.hp2 HG01928.hp2 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02083.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp2 HG02165.hp2 HG02258.hp2 HG02300.hp2 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02622.hp1 HG02886.hp2 HG02895.hp2 HG02897.hp2 HG02922.hp1 HG03041.hp2 HG03209.hp2 HG03453.hp2 HG03471.hp1 HG03540.hp2 HG03688.hp1 HG04184.hp2 HG04199.hp1 HG06807.hp1 NA18522.hp1 NA18747.hp1 NA18747.hp2 NA18941.hp1 NA18952.hp1 NA18953.hp1 NA18954.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18966.hp2 NA18979.hp2 NA18984.hp1 NA18984.hp2 NA18986.hp2 NA18994.hp1 NA19000.hp1 NA19003.hp2 NA19007.hp1 NA19010.hp2 NA19030.hp2 NA19054.hp1 NA19064.hp2 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19079.hp2 NA19082.hp1 NA19086.hp2 NA19088.hp1 NA20752.hp1 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0001c0007 others(3): Show a0001c0002 a0001c0003 a0001c0007 a0001c0027 a0002c0001 a0002c0016	a0001c0002t0001 a0001c0002t0008 a0001c0003t0001 others(4): Show a0001c0002t0001 a0001c0002t0008 a0001c0003t0001 a0001c0007t0001 a0001c0027t0001 a0002c0001t0001 a0002c0016t0001	a0001c0002t0001g0015 a0001c0002t0001g0016 a0001c0002t0001g0019 others(81): Show a0001c0002t0001g0015 a0001c0002t0001g0016 a0001c0002t0001g0019 a0001c0002t0001g0025 a0001c0002t0001g0026 a0001c0002t0001g0029 a0001c0002t0001g0051 a0001c0002t0001g0062 a0001c0002t0001g0081 a0001c0002t0001g0102 a0001c0002t0001g0105 a0001c0002t0001g0116 a0001c0002t0001g0117 a0001c0002t0001g0127 a0001c0002t0001g0149 a0001c0002t0001g0162 a0001c0002t0001g0167 a0001c0002t0001g0168 a0001c0002t0001g0172 a0001c0002t0001g0178 a0001c0002t0001g0182 a0001c0002t0001g0183 a0001c0002t0001g0191 a0001c0002t0001g0192 a0001c0002t0001g0193 a0001c0002t0001g0196 a0001c0002t0001g0203 a0001c0002t0001g0204 a0001c0002t0001g0207 a0001c0002t0001g0208 a0001c0002t0001g0211 a0001c0002t0001g0213 a0001c0002t0001g0214 a0001c0002t0001g0216 a0001c0002t0001g0219 a0001c0002t0001g0221 a0001c0002t0001g0222 a0001c0002t0001g0225 a0001c0002t0001g0230 a0001c0002t0001g0234 a0001c0002t0001g0235 a0001c0002t0001g0236 a0001c0002t0001g0237 a0001c0002t0001g0238 a0001c0002t0001g0239 a0001c0002t0001g0240 a0001c0002t0001g0241 a0001c0002t0001g0242 a0001c0002t0001g0249 a0001c0002t0001g0250 a0001c0002t0001g0251 a0001c0002t0001g0255 a0001c0002t0001g0258 a0001c0002t0001g0262 a0001c0002t0001g0263 a0001c0002t0001g0264 a0001c0002t0001g0266 a0001c0002t0001g0272 a0001c0002t0001g0274 a0001c0002t0001g0279 a0001c0002t0001g0280 a0001c0002t0001g0283 a0001c0002t0001g0285 a0001c0002t0001g0287 a0001c0002t0001g0291 a0001c0002t0001g0293 a0001c0002t0001g0298 a0001c0002t0001g0299 a0001c0002t0001g0331 a0001c0002t0001g0345 a0001c0002t0008g0126 a0001c0003t0001g0008 a0001c0003t0001g0061 a0001c0003t0001g0233 a0001c0007t0001g0186 a0001c0007t0001g0187 a0001c0007t0001g0188 a0001c0007t0001g0300 a0001c0007t0001g0326 a0001c0027t0001g0095 a0002c0001t0001g0099 a0002c0001t0001g0158 a0002c0016t0001g0128 a0002c0016t0001g0129	84	372	0.2258	-12	c.142 others(31): Show c.1428+1137_1428+1148delCCCATCCACCCA	RAP1GAP	ENSG00000076864.21	transcript	ENST00000374765.9	protein_coding	18/24			chr1	TogoVar
RAP1GAP_chr1_21591221_21674357	21616136	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	NA18950.hp2 NA18964.hp1 NA19064.hp1 NA18950.hp2 NA18964.hp1 NA19064.hp1	a0002 a0006 a0002 a0006	a0002c0001 a0006c0021 a0002c0001 a0006c0021	a0002c0001t0001 a0006c0021t0001 a0002c0001t0001 a0006c0021t0001	a0002c0001t0001g0013 a0002c0001t0001g0031 a0006c0021t0001g0035 a0002c0001t0001g0013 a0002c0001t0001g0031 a0006c0021t0001g0035	3	372	0.0081	-12	c.291 others(29): Show c.291+1158_291+1169delGTGTGTGTGTGT	RAP1GAP	ENSG00000076864.21	transcript	ENST00000374765.9	protein_coding	7/24			chr1	TogoVar
RAP1GAP_chr1_21591221_21674357	21636910	AAGGAAGG others(5): Show AAGGAAGGGAGGG	A A	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02723.hp2 HG02976.hp1 others(2): Show HG02451.hp2 HG02723.hp2 HG02976.hp1 HG03041.hp1 HG03098.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0002c0001 a0001c0002 a0001c0003 a0002c0001	a0001c0002t0001 a0001c0003t0001 a0001c0003t0002 others(1): Show a0001c0002t0001 a0001c0003t0001 a0001c0003t0002 a0002c0001t0001	a0001c0002t0001g0162 a0001c0003t0001g0210 a0001c0003t0001g0231 others(2): Show a0001c0002t0001g0162 a0001c0003t0001g0210 a0001c0003t0001g0231 a0001c0003t0002g0320 a0002c0001t0001g0163	5	372	0.0134	-12	c.-11 others(33): Show c.-112-10525_-112-10514delCCCTCCCTTCCT	RAP1GAP	ENSG00000076864.21	transcript	ENST00000374765.9	protein_coding	2/24			chr1	TogoVar
RAP1GAP_chr1_21591221_21674357	21636914	AAGGGAGG others(5): Show AAGGGAGGGAGGG	A A	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG01943.hp1 HG00323.hp2 HG01943.hp1	a0001 a0001	a0001c0002 a0001c0012 a0001c0002 a0001c0012	a0001c0002t0001 a0001c0012t0001 a0001c0002t0001 a0001c0012t0001	a0001c0002t0001g0221 a0001c0012t0001g0059 a0001c0002t0001g0221 a0001c0012t0001g0059	2	372	0.0054	-12	c.-11 others(33): Show c.-112-10529_-112-10518delCCCTCCCTCCCT	RAP1GAP	ENSG00000076864.21	transcript	ENST00000374765.9	protein_coding	2/24			chr1	TogoVar
RAP1GAP_chr1_21591221_21674357	21653543	ACTTCCTT others(5): Show ACTTCCTTCCTTC	A A	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02723.hp1 HG03130.hp2 others(5): Show HG02630.hp2 HG02723.hp1 HG03130.hp2 HG03139.hp1 HG03486.hp1 HG03579.hp2 NA18906.hp2 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0001 a0002c0006 a0001c0003 a0002c0001 a0002c0006	a0001c0003t0002 a0002c0001t0001 a0002c0006t0001 a0001c0003t0002 a0002c0001t0001 a0002c0006t0001	a0001c0003t0002g0358 a0001c0003t0002g0359 a0001c0003t0002g0360 others(5): Show a0001c0003t0002g0358 a0001c0003t0002g0359 a0001c0003t0002g0360 a0001c0003t0002g0361 a0002c0001t0001g0312 a0002c0001t0001g0355 a0002c0001t0001g0356 a0002c0006t0001g0306	8	372	0.0215	-12	c.-14 others(31): Show c.-148-3759_-148-3748delGAAGGAAGGAAG	RAP1GAP	ENSG00000076864.21	transcript	ENST00000374765.9	protein_coding	1/24			chr1	TogoVar
RAP1GAP_chr1_21591221_21674357	21653582	TCCTTCCT others(5): Show TCCTTCCTTCCTC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00323.hp2 HG02559.hp2 others(2): Show HG00099.hp2 HG00323.hp2 HG02559.hp2 HG03098.hp1 HG04228.hp1	a0001 a0002 a0001 a0002	a0001c0003 a0001c0012 a0002c0001 a0001c0003 a0001c0012 a0002c0001	a0001c0003t0002 a0001c0012t0001 a0002c0001t0002 others(1): Show a0001c0003t0002 a0001c0012t0001 a0002c0001t0002 a0002c0001t0005	a0001c0003t0002g0320 a0001c0012t0001g0059 a0002c0001t0002g0104 others(2): Show a0001c0003t0002g0320 a0001c0012t0001g0059 a0002c0001t0002g0104 a0002c0001t0005g0092 a0002c0001t0005g0130	5	372	0.0134	-12	c.-14 others(31): Show c.-148-3798_-148-3787delGAGGAAGGAAGG	RAP1GAP	ENSG00000076864.21	transcript	ENST00000374765.9	protein_coding	1/24			chr1	TogoVar
RAP1GAP_chr1_21591221_21674357	21653586	TCCTTCCT others(5): Show TCCTTCCTCCCTC	T T	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01071.hp2 HG03486.hp2 HG01070.hp2 HG01071.hp2 HG03486.hp2	a0002 a0003 a0002 a0003	a0002c0006 a0003c0010 a0002c0006 a0003c0010	a0002c0006t0001 a0003c0010t0001 a0002c0006t0001 a0003c0010t0001	a0002c0006t0001g0118 a0002c0006t0001g0119 a0003c0010t0001g0327 a0002c0006t0001g0118 a0002c0006t0001g0119 a0003c0010t0001g0327	3	372	0.0081	-12	c.-14 others(31): Show c.-148-3802_-148-3791delGAGGGAGGAAGG	RAP1GAP	ENSG00000076864.21	transcript	ENST00000374765.9	protein_coding	1/24			chr1	TogoVar
RAP1GDS1_chr4_98256384_98448858	98296029	AAACAACA others(5): Show AAACAACAACAAC	A A	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0019 a0001c0001t0023g0019	1	242	0.0041	-12	c.112 others(29): Show c.112+2532_112+2543delCAACAACAACAA	RAP1GDS1	ENSG00000138698.15	transcript	ENST00000408927.8	protein_coding	2/14		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAP1GDS1_chr4_98256384_98448858	98308297	CTATATAT others(5): Show CTATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02615.hp1 HG02976.hp1 others(4): Show HG02258.hp2 HG02615.hp1 HG02976.hp1 HG03225.hp1 HG03710.hp2 NA19030.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0006 a0001c0002t0001 a0001c0001t0006 a0001c0002t0001	a0001c0001t0006g0004 a0001c0001t0006g0005 a0001c0001t0006g0007 others(4): Show a0001c0001t0006g0004 a0001c0001t0006g0005 a0001c0001t0006g0007 a0001c0001t0006g0008 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0002t0001g0006	7	242	0.0289	-12	c.112 others(31): Show c.112+14806_112+14817delATATATATATAT	RAP1GDS1	ENSG00000138698.15	transcript	ENST00000408927.8	protein_coding	2/14		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAP1GDS1_chr4_98256384_98448858	98447356	GGCTATTT others(5): Show GGCTATTTTTTTT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19087.hp2 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0139 a0001c0001t0002g0139	1	242	0.0041	-12	c.52 others(23): Show c.5240_*5251delGCTATTTTTTTT	RAP1GDS1	ENSG00000138698.15	transcript	ENST00000408927.8	protein_coding		3499		chr4	TogoVar
RAP2A_chr13_97429169_97474128	97435465	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0163 a0001c0001t0010g0163	1	344	0.0029	-12	c.314 others(27): Show c.314+692_314+703delAAAAAAAAAAAA	RAP2A	ENSG00000125249.7	transcript	ENST00000245304.5	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr13	TogoVar
RAP2A_chr13_97429169_97474128	97438510	AGACCTTA others(5): Show AGACCTTAGCAAT	A A	intron_variant intron_variant	MODIFIER	NA18947.hp1 NA19058.hp1 NA18947.hp1 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0004 a0001c0001t0005	a0001c0001t0004g0044 a0001c0001t0005g0044 a0001c0001t0004g0044 a0001c0001t0005g0044	2	344	0.0058	-12	c.314 others(29): Show c.314+3733_314+3744delAGCAATGACCTT	RAP2A	ENSG00000125249.7	transcript	ENST00000245304.5	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr13	TogoVar
RAP2A_chr13_97429169_97474128	97462032	TTATATAT others(5): Show TTATATATATTTA	T T	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG02071.hp2 HG02738.hp1 others(3): Show HG00423.hp2 HG02071.hp2 HG02738.hp1 HG03130.hp1 HG03139.hp2 NA18747.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0017	a0001c0001t0001g0174 a0001c0001t0002g0062 a0001c0001t0003g0115 others(3): Show a0001c0001t0001g0174 a0001c0001t0002g0062 a0001c0001t0003g0115 a0001c0001t0003g0119 a0001c0001t0004g0161 a0001c0001t0017g0151	6	344	0.0174	-12	c.315 others(29): Show c.315-2143_315-2132delATATTTATATAT	RAP2A	ENSG00000125249.7	transcript	ENST00000245304.5	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr13	TogoVar
RAP2C_chrX_132198025_132224447	132203506	TGAGAGAG others(5): Show TGAGAGAGAGAGA	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01175.hp1 HG01496.hp2 HG02027.hp1 others(11): Show HG01175.hp1 HG01496.hp2 HG02027.hp1 HG02165.hp2 HG02965.hp1 HG02976.hp2 HG03540.hp1 HG03831.hp2 NA18906.hp1 NA18906.hp2 NA18990.hp1 NA19001.hp1 NA19011.hp2 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0023 a0001c0001t0032 others(4): Show a0001c0001t0008 a0001c0001t0023 a0001c0001t0032 a0001c0001t0039 a0001c0001t0057 a0001c0001t0062 a0001c0001t0064	a0001c0001t0008g0011 a0001c0001t0008g0038 a0001c0001t0008g0046 others(9): Show a0001c0001t0008g0011 a0001c0001t0008g0038 a0001c0001t0008g0046 a0001c0001t0008g0057 a0001c0001t0008g0148 a0001c0001t0023g0096 a0001c0001t0023g0131 a0001c0001t0032g0052 a0001c0001t0039g0129 a0001c0001t0057g0140 a0001c0001t0062g0149 a0001c0001t0064g0023	14	235	0.0596	-12	c.21 others(23): Show c.2104_*2115delTCTCTCTCTCTC	RAP2C	ENSG00000123728.10	transcript	ENST00000370874.2	protein_coding	6/6	10650		chrX	TogoVar
RAP2C_chrX_132198025_132224447	132218098	CCCCCCAC others(5): Show CCCCCCACCCCCA	C C	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02622.hp1 HG02970.hp1 HG01192.hp1 HG02622.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0015 a0001c0001t0004 a0001c0001t0015	a0001c0001t0004g0036 a0001c0001t0004g0037 a0001c0001t0015g0035 a0001c0001t0004g0036 a0001c0001t0004g0037 a0001c0001t0015g0035	3	235	0.0128	-12	c.-63 others(27): Show c.-635-98_-635-87delTGGGGGTGGGGG	RAP2C	ENSG00000123728.10	transcript	ENST00000370874.2	protein_coding	2/5			chrX	TogoVar
RAPGEF1_chr9_131571775_131745076	131573593	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02922.hp1 HG02965.hp2 HG02922.hp1 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0361 a0001c0001t0018g0362 a0001c0001t0018g0361 a0001c0001t0018g0362	2	368	0.0054	-12	c.58 others(23): Show c.5892_*5903delTTTTTTTTTTTT	RAPGEF1	ENSG00000107263.19	transcript	ENST00000683357.1	protein_coding		3181		chr9	TogoVar
RAPGEF2_chr4_159098079_159365173	159104522	GAGAGGGA others(5): Show GAGAGGGAGAGAC	G G	intron_variant intron_variant	MODIFIER	HG01516.hp1 HG01516.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0022 a0001c0002t0022	a0001c0002t0022g0106 a0001c0002t0022g0106	1	194	0.0052	-12	c.69+ others(25): Show c.69+296_69+307delGGAGAGACAGAG	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	1/29		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAPGEF2_chr4_159098079_159365173	159128940	GTGTGTAT others(5): Show GTGTGTATATATA	G G	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0078 a0001c0001t0007g0078	1	194	0.0052	-12	c.69+ others(29): Show c.69+24711_69+24722delGTGTATATATAT	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	1/29		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAPGEF2_chr4_159098079_159365173	159198271	CTTCTTTC others(5): Show CTTCTTTCTTTCT	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01934.hp2 HG01978.hp1 others(5): Show HG01081.hp1 HG01934.hp2 HG01978.hp1 HG02486.hp2 HG02630.hp1 HG02976.hp2 HG03017.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0007 a0001c0001 a0001c0002 a0001c0007	a0001c0001t0002 a0001c0001t0006 a0001c0001t0024 others(2): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0024 a0001c0002t0003 a0001c0007t0016	a0001c0001t0002g0005 a0001c0001t0002g0076 a0001c0001t0002g0098 others(5): Show a0001c0001t0002g0005 a0001c0001t0002g0076 a0001c0001t0002g0098 a0001c0001t0006g0170 a0001c0001t0024g0087 a0001c0002t0003g0181 a0001c0002t0003g0188 a0001c0007t0016g0141	8	194	0.0412	-12	c.197 others(29): Show c.197+5070_197+5081delCTTTCTTTCTTT	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	3/29		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAPGEF2_chr4_159098079_159365173	159234436	GTAGTGGA others(5): Show GTAGTGGAACGAT	G G	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0012 a0001c0001t0005g0012	1	194	0.0052	-12	c.282 others(29): Show c.282-4372_282-4361delTAGTGGAACGAT	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	4/29			chr4	TogoVar
RAPGEF2_chr4_159098079_159365173	159273626	GTTTCTTT others(5): Show GTTTCTTTCTTTC	G G	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00733.hp1 HG00735.hp2 others(31): Show HG00642.hp1 HG00733.hp1 HG00735.hp2 HG01099.hp2 HG01106.hp2 HG01167.hp1 HG01361.hp1 HG01361.hp2 HG01516.hp1 HG01978.hp1 HG01993.hp2 HG02129.hp2 HG02155.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02559.hp1 HG02723.hp2 HG02809.hp2 HG02818.hp1 HG02897.hp1 HG03017.hp1 HG03017.hp2 HG03139.hp1 HG03195.hp1 HG03453.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03834.hp2 HG04228.hp1 NA18906.hp2 NA18955.hp2 NA18961.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0009 a0001c0001 a0001c0002 a0002c0009	a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 others(10): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0015 a0001c0001t0029 a0001c0002t0001 a0001c0002t0003 a0001c0002t0012 a0001c0002t0022 a0002c0009t0002	a0001c0001t0002g0001 a0001c0001t0002g0029 a0001c0001t0002g0074 others(31): Show a0001c0001t0002g0001 a0001c0001t0002g0029 a0001c0001t0002g0074 a0001c0001t0002g0096 a0001c0001t0002g0109 a0001c0001t0002g0110 a0001c0001t0002g0122 a0001c0001t0002g0124 a0001c0001t0004g0193 a0001c0001t0006g0171 a0001c0001t0006g0177 a0001c0001t0006g0183 a0001c0001t0007g0078 a0001c0001t0007g0127 a0001c0001t0009g0059 a0001c0001t0010g0155 a0001c0001t0015g0191 a0001c0001t0029g0002 a0001c0002t0001g0007 a0001c0002t0001g0018 a0001c0002t0001g0039 a0001c0002t0001g0054 a0001c0002t0001g0055 a0001c0002t0001g0129 a0001c0002t0003g0160 a0001c0002t0003g0172 a0001c0002t0003g0178 a0001c0002t0003g0181 a0001c0002t0003g0186 a0001c0002t0003g0188 a0001c0002t0003g0189 a0001c0002t0012g0156 a0001c0002t0022g0106 a0002c0009t0002g0011	34	194	0.1753	-12	c.543 others(31): Show c.543+29901_543+29912delTTCTTTCTTTCT	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	7/29		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAPGEF2_chr4_159098079_159365173	159275054	CGTGTGTG others(5): Show CGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG01981.hp1 NA20129.hp1 HG01981.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0009 a0001c0002t0003 a0001c0001t0009 a0001c0002t0003	a0001c0001t0009g0058 a0001c0002t0003g0168 a0001c0001t0009g0058 a0001c0002t0003g0168	2	194	0.0103	-12	c.544 others(31): Show c.544-29257_544-29246delGTGTGTGTGTGT	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	7/29		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAPGEF2_chr4_159098079_159365173	159284481	GACACACA others(5): Show GACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01517.hp2 HG01943.hp2 others(5): Show HG01123.hp2 HG01517.hp2 HG01943.hp2 HG02647.hp1 HG02970.hp1 HG03130.hp2 HG03209.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 a0001c0001 a0001c0002 a0001c0006	a0001c0001t0002 a0001c0001t0008 a0001c0001t0013 others(3): Show a0001c0001t0002 a0001c0001t0008 a0001c0001t0013 a0001c0001t0021 a0001c0002t0003 a0001c0006t0014	a0001c0001t0002g0079 a0001c0001t0008g0112 a0001c0001t0013g0084 others(5): Show a0001c0001t0002g0079 a0001c0001t0008g0112 a0001c0001t0013g0084 a0001c0001t0013g0085 a0001c0001t0021g0028 a0001c0002t0003g0173 a0001c0006t0014g0026 a0001c0006t0014g0036	8	194	0.0412	-12	c.544 others(31): Show c.544-19818_544-19807delACACACACACAC	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	7/29		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAPGEF2_chr4_159098079_159365173	159286030	AACCACCA others(5): Show AACCACCACCACC	A A	intron_variant intron_variant	MODIFIER	HG03540.hp1 NA18906.hp1 HG03540.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0029 a0001c0001t0026 a0001c0001t0029	a0001c0001t0026g0003 a0001c0001t0029g0002 a0001c0001t0026g0003 a0001c0001t0029g0002	2	194	0.0103	-12	c.544 others(31): Show c.544-18271_544-18260delCCACCACCACCA	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	7/29		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAPGEF2_chr4_159098079_159365173	159294634	TCTTCCTT others(5): Show TCTTCCTTCCTTC	T T	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02055.hp1 HG02109.hp2 others(10): Show HG01081.hp2 HG02055.hp1 HG02109.hp2 HG02145.hp1 HG02155.hp2 HG02165.hp1 HG02615.hp1 HG02630.hp2 HG02818.hp2 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0005 a0001c0001t0008 a0001c0002t0001 others(3): Show a0001c0001t0005 a0001c0001t0008 a0001c0002t0001 a0001c0003t0004 a0001c0003t0017 a0001c0003t0019	a0001c0001t0005g0051 a0001c0001t0008g0067 a0001c0002t0001g0153 others(10): Show a0001c0001t0005g0051 a0001c0001t0008g0067 a0001c0002t0001g0153 a0001c0003t0004g0009 a0001c0003t0004g0047 a0001c0003t0004g0061 a0001c0003t0004g0063 a0001c0003t0004g0064 a0001c0003t0004g0068 a0001c0003t0004g0072 a0001c0003t0004g0080 a0001c0003t0017g0117 a0001c0003t0019g0135	13	194	0.0670	-12	c.544 others(29): Show c.544-9663_544-9652delCTTCCTTCCTTC	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	7/29		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAPGEF2_chr4_159098079_159365173	159332968	TTTTATTT others(5): Show TTTTATTTATTTA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02976.hp2 HG01884.hp1 HG02976.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0016 a0001c0007t0016	a0001c0007t0016g0140 a0001c0007t0016g0141 a0001c0007t0016g0140 a0001c0007t0016g0141	2	194	0.0103	-12	c.213 others(29): Show c.2135+287_2135+298delATTTATTTATTT	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	17/29		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAPGEF2_chr4_159098079_159365173	159340779	CCACACAC others(5): Show CCACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02630.hp1 HG02647.hp2 others(2): Show HG02622.hp2 HG02630.hp1 HG02647.hp2 HG03540.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0024 a0001c0001t0028 a0001c0001t0009 a0001c0001t0024 a0001c0001t0028	a0001c0001t0009g0058 a0001c0001t0009g0059 a0001c0001t0009g0146 others(2): Show a0001c0001t0009g0058 a0001c0001t0009g0059 a0001c0001t0009g0146 a0001c0001t0024g0087 a0001c0001t0028g0167	5	194	0.0258	-12	c.253 others(29): Show c.2535-761_2535-750delACACACACACAC	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	19/29		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAPGEF2_chr4_159098079_159365173	159348242	AGATGGAT others(5): Show AGATGGATGGATG	A A	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00558.hp2 HG00597.hp1 others(48): Show HG00280.hp2 HG00558.hp2 HG00597.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp2 HG00733.hp1 HG00738.hp1 HG01069.hp2 HG01071.hp2 HG01074.hp2 HG01099.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01261.hp2 HG01361.hp1 HG01433.hp1 HG01496.hp2 HG01516.hp1 HG01934.hp1 HG01943.hp1 HG01943.hp2 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02145.hp2 HG02155.hp2 HG02165.hp1 HG02486.hp1 HG02602.hp2 HG02818.hp2 HG02922.hp1 HG02976.hp1 HG03139.hp2 HG03195.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03492.hp2 HG03669.hp1 HG03834.hp1 HG04115.hp2 HG04228.hp1 HG06807.hp1 NA18986.hp2 NA18990.hp2 NA19043.hp2 NA19240.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005	a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 others(9): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 a0001c0001t0033 a0001c0001t0034 a0001c0002t0001 a0001c0002t0003 a0001c0002t0022 a0001c0002t0030 a0001c0004t0001 a0001c0004t0003 a0001c0005t0005	a0001c0001t0002g0149 a0001c0001t0005g0012 a0001c0001t0005g0051 others(48): Show a0001c0001t0002g0149 a0001c0001t0005g0012 a0001c0001t0005g0051 a0001c0001t0005g0092 a0001c0001t0005g0093 a0001c0001t0008g0033 a0001c0001t0008g0041 a0001c0001t0008g0062 a0001c0001t0008g0067 a0001c0001t0008g0070 a0001c0001t0008g0112 a0001c0001t0033g0113 a0001c0001t0034g0115 a0001c0002t0001g0006 a0001c0002t0001g0007 a0001c0002t0001g0014 a0001c0002t0001g0017 a0001c0002t0001g0027 a0001c0002t0001g0030 a0001c0002t0001g0031 a0001c0002t0001g0032 a0001c0002t0001g0034 a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0042 a0001c0002t0001g0043 a0001c0002t0001g0046 a0001c0002t0001g0050 a0001c0002t0001g0052 a0001c0002t0001g0053 a0001c0002t0001g0054 a0001c0002t0001g0055 a0001c0002t0001g0056 a0001c0002t0001g0069 a0001c0002t0001g0075 a0001c0002t0001g0100 a0001c0002t0001g0126 a0001c0002t0001g0143 a0001c0002t0001g0152 a0001c0002t0001g0153 a0001c0002t0001g0158 a0001c0002t0003g0150 a0001c0002t0003g0166 a0001c0002t0003g0176 a0001c0002t0003g0189 a0001c0002t0022g0106 a0001c0002t0030g0137 a0001c0004t0001g0020 a0001c0004t0003g0159 a0001c0005t0005g0016	51	194	0.2629	-12	c.371 others(31): Show c.3712+1276_3712+1287delGGATGGATGGAT	RAPGEF2	ENSG00000109756.10	transcript	ENST00000691494.1	protein_coding	25/29		INFO_REALIGN_3_PRIME	chr4	TogoVar
RAPGEF4_chr2_172730845_173057893	172918371	CCACACAC others(5): Show CCACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG03209.hp1 HG02145.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0001 a0001c0008t0002 a0001c0001t0001 a0001c0008t0002	a0001c0001t0001g0111 a0001c0008t0002g0030 a0001c0001t0001g0111 a0001c0008t0002g0030	2	178	0.0112	-12	c.517 others(27): Show c.517+526_517+537delCACACACACACA	RAPGEF4	ENSG00000091428.18	transcript	ENST00000397081.8	protein_coding	5/30		INFO_REALIGN_3_PRIME	chr2	TogoVar
RAPGEF4_chr2_172730845_173057893	173003243	GAAGGTCC others(5): Show GAAGGTCCGTTCC	G G	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00558.hp1 HG00558.hp2 others(14): Show HG00099.hp1 HG00558.hp1 HG00558.hp2 HG00642.hp1 HG01099.hp2 HG01109.hp1 HG01981.hp2 HG02027.hp1 HG03490.hp1 HG03492.hp1 HG03654.hp2 NA18950.hp1 NA18952.hp2 NA18979.hp2 NA18997.hp2 NA19005.hp2 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0055 others(14): Show a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0055 a0001c0001t0001g0063 a0001c0001t0001g0073 a0001c0001t0001g0082 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0116 a0001c0001t0001g0118 a0001c0001t0001g0151 a0001c0001t0001g0155 a0001c0001t0001g0163 a0001c0001t0002g0003 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038	17	178	0.0955	-12	c.165 others(31): Show c.1658+1901_1658+1912delAGGTCCGTTCCA	RAPGEF4	ENSG00000091428.18	transcript	ENST00000397081.8	protein_coding	17/30		INFO_REALIGN_3_PRIME	chr2	TogoVar
RAPGEF4_chr2_172730845_173057893	173017884	GGCCCTGA others(5): Show GGCCCTGAGCCCA	G G	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG03041.hp1 HG03471.hp1 HG02896.hp2 HG03041.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0005t0001 a0001c0001t0001 a0001c0005t0001	a0001c0001t0001g0049 a0001c0005t0001g0047 a0001c0005t0001g0087 a0001c0001t0001g0049 a0001c0005t0001g0047 a0001c0005t0001g0087	3	178	0.0169	-12	c.200 others(29): Show c.2008+390_2008+401delCCAGCCCTGAGC	RAPGEF4	ENSG00000091428.18	transcript	ENST00000397081.8	protein_coding	21/30		INFO_REALIGN_3_PRIME	chr2	TogoVar
RAPGEF5_chr7_22113236_22362154	22113974	TACACACA others(5): Show TACACACACACAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp2 HG00673.hp1 HG00673.hp2 others(37): Show HG00621.hp2 HG00673.hp1 HG00673.hp2 HG01106.hp2 HG01496.hp1 HG02148.hp1 HG02293.hp1 HG02300.hp1 HG03041.hp1 HG03831.hp2 HG04115.hp1 HG04228.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18939.hp2 NA18961.hp1 NA18961.hp2 NA18963.hp2 NA18966.hp2 NA18970.hp1 NA18973.hp1 NA18978.hp2 NA18980.hp2 NA18983.hp1 NA18983.hp2 NA18986.hp2 NA18994.hp2 NA18999.hp1 NA18999.hp2 NA19001.hp1 NA19003.hp1 NA19005.hp1 NA19005.hp2 NA19011.hp1 NA19012.hp1 NA19058.hp1 NA19068.hp1 NA19081.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0008 others(1): Show a0001c0001 a0001c0002 a0001c0008 a0003c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(26): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0060 a0001c0001t0083 a0001c0001t0094 a0001c0001t0098 a0001c0001t0108 a0001c0001t0128 a0001c0001t0165 a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 a0001c0002t0013 a0001c0002t0015 a0001c0002t0020 a0001c0002t0030 a0001c0002t0031 a0001c0002t0032 a0001c0002t0077 a0001c0002t0089 a0001c0002t0162 a0001c0008t0164 a0003c0007t0090	a0001c0001t0001g0031 a0001c0001t0001g0107 a0001c0001t0001g0126 others(37): Show a0001c0001t0001g0031 a0001c0001t0001g0107 a0001c0001t0001g0126 a0001c0001t0002g0050 a0001c0001t0002g0296 a0001c0001t0003g0028 a0001c0001t0003g0318 a0001c0001t0004g0066 a0001c0001t0005g0099 a0001c0001t0010g0022 a0001c0001t0010g0176 a0001c0001t0011g0162 a0001c0001t0011g0175 a0001c0001t0013g0183 a0001c0001t0060g0122 a0001c0001t0083g0059 a0001c0001t0094g0040 a0001c0001t0098g0297 a0001c0001t0108g0166 a0001c0001t0128g0177 a0001c0001t0165g0186 a0001c0002t0001g0061 a0001c0002t0001g0174 a0001c0002t0001g0315 a0001c0002t0003g0279 a0001c0002t0004g0030 a0001c0002t0004g0074 a0001c0002t0013g0062 a0001c0002t0013g0093 a0001c0002t0015g0025 a0001c0002t0020g0316 a0001c0002t0030g0021 a0001c0002t0031g0205 a0001c0002t0032g0032 a0001c0002t0032g0124 a0001c0002t0077g0091 a0001c0002t0089g0323 a0001c0002t0162g0106 a0001c0008t0164g0007 a0003c0007t0090g0194	40	330	0.1212	-12	c.84 others(23): Show c.8420_*8431delGTGTGTGTGTGT	RAPGEF5	ENSG00000136237.20	transcript	ENST00000665637.1	protein_coding		4261		chr7	TogoVar
RAPGEF5_chr7_22113236_22362154	22161537	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	NA19068.hp2 NA19068.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0141 a0001c0002t0141	a0001c0002t0141g0271 a0001c0002t0141g0271	1	330	0.0030	-12	c.142 others(29): Show c.1428+848_1428+859delGTGTGTGTGTGT	RAPGEF5	ENSG00000136237.20	transcript	ENST00000665637.1	protein_coding	13/25			chr7	TogoVar
RAPGEF5_chr7_22113236_22362154	22316479	ATATATAT others(5): Show ATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02572.hp2 HG02970.hp1 others(2): Show HG01255.hp1 HG02572.hp2 HG02970.hp1 NA19030.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0015 a0001c0001 a0001c0002 a0001c0015	a0001c0001t0030 a0001c0001t0039 a0001c0001t0106 others(2): Show a0001c0001t0030 a0001c0001t0039 a0001c0001t0106 a0001c0002t0170 a0001c0015t0006	a0001c0001t0030g0197 a0001c0001t0039g0199 a0001c0001t0106g0196 others(2): Show a0001c0001t0030g0197 a0001c0001t0039g0199 a0001c0001t0106g0196 a0001c0002t0170g0284 a0001c0015t0006g0198	5	330	0.0152	-12	c.283 others(29): Show c.283-1015_283-1004delAATATATATATA	RAPGEF5	ENSG00000136237.20	transcript	ENST00000665637.1	protein_coding	2/25			chr7	TogoVar
RAPGEF5_chr7_22113236_22362154	22316481	ATATATAT others(5): Show ATATATATATTTT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00673.hp1 HG02080.hp2 others(11): Show HG00621.hp1 HG00673.hp1 HG02080.hp2 HG02155.hp1 HG02257.hp1 HG02698.hp1 HG02723.hp1 HG03041.hp1 HG03471.hp1 HG03490.hp2 HG03492.hp2 HG03710.hp2 NA18949.hp2 NA18972.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0007 a0001c0001 a0001c0002 a0003c0007	a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 others(10): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0016 a0001c0001t0044 a0001c0001t0121 a0001c0001t0148 a0001c0002t0001 a0001c0002t0003 a0001c0002t0041 a0001c0002t0079 a0003c0007t0019 a0003c0007t0090	a0001c0001t0005g0281 a0001c0001t0006g0277 a0001c0001t0009g0283 others(10): Show a0001c0001t0005g0281 a0001c0001t0006g0277 a0001c0001t0009g0283 a0001c0001t0016g0155 a0001c0001t0044g0273 a0001c0001t0121g0015 a0001c0001t0148g0150 a0001c0002t0001g0001 a0001c0002t0003g0279 a0001c0002t0041g0268 a0001c0002t0079g0280 a0003c0007t0019g0195 a0003c0007t0090g0194	14	330	0.0424	-12	c.283 others(29): Show c.283-1017_283-1006delAAAATATATATA	RAPGEF5	ENSG00000136237.20	transcript	ENST00000665637.1	protein_coding	2/25			chr7	TogoVar
RAPGEF6_chr5_131418921_131640229	131447595	TTTTATTT others(5): Show TTTTATTTAGATG	T T	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02145.hp2 NA20129.hp2 HG02109.hp1 HG02145.hp2 NA20129.hp2	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0011 a0003c0006t0025 a0003c0006t0011 a0003c0006t0025	a0003c0006t0011g0252 a0003c0006t0011g0254 a0003c0006t0025g0253 a0003c0006t0011g0252 a0003c0006t0011g0254 a0003c0006t0025g0253	3	324	0.0093	-12	c.320 others(29): Show c.3201-904_3201-893delCATCTAAATAAA	RAPGEF6	ENSG00000158987.22	transcript	ENST00000509018.6	protein_coding	21/27			chr5	TogoVar
RAPGEF6_chr5_131418921_131640229	131517780	TACACACA others(5): Show TACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02723.hp2 HG02015.hp1 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0003 a0001c0001t0001 a0001c0003t0003	a0001c0001t0001g0222 a0001c0003t0003g0142 a0001c0001t0001g0222 a0001c0003t0003g0142	2	324	0.0062	-12	c.627 others(29): Show c.627+3598_627+3609delGTGTGTGTGTGT	RAPGEF6	ENSG00000158987.22	transcript	ENST00000509018.6	protein_coding	7/27			chr5	TogoVar
RAPGEF6_chr5_131418921_131640229	131521840	TACACACA others(5): Show TACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02451.hp2 HG02559.hp1 others(3): Show HG01496.hp2 HG02451.hp2 HG02559.hp1 HG02622.hp2 HG02647.hp1 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0008 a0001c0005t0004 a0001c0005t0015 a0001c0001t0008 a0001c0005t0004 a0001c0005t0015	a0001c0001t0008g0166 a0001c0005t0004g0167 a0001c0005t0004g0273 others(3): Show a0001c0001t0008g0166 a0001c0005t0004g0167 a0001c0005t0004g0273 a0001c0005t0004g0275 a0001c0005t0004g0276 a0001c0005t0015g0274	6	324	0.0185	-12	c.496 others(27): Show c.496-331_496-320delGTGTGTGTGTGT	RAPGEF6	ENSG00000158987.22	transcript	ENST00000509018.6	protein_coding	6/27			chr5	TogoVar
RAPGEFL1_chr17_40172470_40200650	40194232	CGTGTGTG others(5): Show CGTGTGTGTGTGT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00099.hp2 HG00609.hp2 HG00741.hp2 others(16): Show HG00099.hp2 HG00609.hp2 HG00741.hp2 HG01433.hp1 HG01433.hp2 HG02055.hp2 HG02145.hp1 HG02148.hp2 HG02486.hp1 HG02922.hp2 HG03017.hp1 HG03225.hp1 HG03516.hp1 HG03579.hp1 HG03927.hp2 NA18906.hp1 NA19030.hp1 NA19043.hp1 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0006 a0002c0003 a0001c0001 a0001c0006 a0002c0003	a0001c0001t0011 a0001c0001t0029 a0001c0001t0030 others(7): Show a0001c0001t0011 a0001c0001t0029 a0001c0001t0030 a0001c0001t0031 a0001c0001t0035 a0001c0001t0051 a0001c0001t0060 a0001c0001t0078 a0001c0006t0066 a0002c0003t0030	a0001c0001t0011g0007 a0001c0001t0011g0011 a0001c0001t0011g0012 others(14): Show a0001c0001t0011g0007 a0001c0001t0011g0011 a0001c0001t0011g0012 a0001c0001t0011g0064 a0001c0001t0011g0093 a0001c0001t0011g0100 a0001c0001t0029g0038 a0001c0001t0029g0039 a0001c0001t0030g0202 a0001c0001t0031g0204 a0001c0001t0031g0205 a0001c0001t0035g0009 a0001c0001t0051g0068 a0001c0001t0060g0083 a0001c0001t0078g0193 a0001c0006t0066g0054 a0002c0003t0030g0200	19	316	0.0601	-12	c.49 others(21): Show c.491_*502delGTGTGTGTGTGT	RAPGEFL1	ENSG00000108352.13	transcript	ENST00000620260.6	protein_coding	15/15	491	INFO_REALIGN_3_PRIME	chr17	TogoVar
RAPH1_chr2_203428682_203540301	203456008	CAAAACAA others(5): Show CAAAACAAAAACA	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00280.hp1 others(86): Show HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00323.hp2 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00597.hp1 HG00609.hp1 HG00673.hp1 HG00733.hp1 HG00735.hp2 HG00741.hp2 HG01071.hp1 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01175.hp2 HG01255.hp2 HG01257.hp1 HG01258.hp2 HG01358.hp1 HG01361.hp1 HG01433.hp2 HG01496.hp2 HG01515.hp2 HG01517.hp1 HG01952.hp2 HG01981.hp1 HG02027.hp1 HG02080.hp2 HG02132.hp2 HG02165.hp1 HG02273.hp1 HG02300.hp1 HG02622.hp2 HG02698.hp1 HG02735.hp2 HG03139.hp1 HG03453.hp1 HG03490.hp1 HG03491.hp1 HG03669.hp2 HG03704.hp1 HG03704.hp2 HG03831.hp2 HG03834.hp2 HG04115.hp2 HG04228.hp2 NA18939.hp1 NA18945.hp2 NA18946.hp1 NA18949.hp1 NA18951.hp1 NA18965.hp2 NA18970.hp2 NA18974.hp2 NA18977.hp1 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp2 NA18986.hp2 NA18994.hp1 NA18998.hp1 NA18999.hp2 NA19001.hp1 NA19004.hp2 NA19009.hp2 NA19010.hp1 NA19043.hp1 NA19057.hp2 NA19062.hp2 NA19064.hp1 NA19065.hp2 NA19066.hp2 NA19067.hp1 NA19076.hp1 NA19077.hp1 NA19078.hp2 NA19084.hp1 NA19088.hp1 NA20752.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0006	a0001c0002 a0001c0007 a0001c0015 others(5): Show a0001c0002 a0001c0007 a0001c0015 a0001c0027 a0002c0006 a0002c0016 a0005c0032 a0006c0025	a0001c0002t0001 a0001c0002t0004 a0001c0002t0007 others(27): Show a0001c0002t0001 a0001c0002t0004 a0001c0002t0007 a0001c0002t0020 a0001c0002t0024 a0001c0002t0033 a0001c0002t0035 a0001c0002t0038 a0001c0002t0042 a0001c0002t0043 a0001c0002t0047 a0001c0002t0049 a0001c0002t0067 a0001c0002t0071 a0001c0002t0072 a0001c0002t0073 a0001c0002t0079 a0001c0002t0090 a0001c0007t0001 a0001c0015t0001 a0001c0027t0020 a0002c0006t0001 a0002c0006t0027 a0002c0006t0030 a0002c0006t0048 a0002c0006t0074 a0002c0016t0001 a0002c0016t0020 a0005c0032t0001 a0006c0025t0030	a0001c0002t0001g0010 a0001c0002t0001g0017 a0001c0002t0001g0019 others(86): Show a0001c0002t0001g0010 a0001c0002t0001g0017 a0001c0002t0001g0019 a0001c0002t0001g0020 a0001c0002t0001g0026 a0001c0002t0001g0034 a0001c0002t0001g0036 a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0043 a0001c0002t0001g0044 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049 a0001c0002t0001g0050 a0001c0002t0001g0051 a0001c0002t0001g0054 a0001c0002t0001g0055 a0001c0002t0001g0056 a0001c0002t0001g0057 a0001c0002t0001g0058 a0001c0002t0001g0066 a0001c0002t0001g0068 a0001c0002t0001g0070 a0001c0002t0001g0071 a0001c0002t0001g0074 a0001c0002t0001g0076 a0001c0002t0001g0080 a0001c0002t0001g0083 a0001c0002t0001g0086 a0001c0002t0001g0087 a0001c0002t0001g0089 a0001c0002t0001g0090 a0001c0002t0001g0091 a0001c0002t0001g0092 a0001c0002t0001g0105 a0001c0002t0004g0106 a0001c0002t0004g0107 a0001c0002t0004g0109 a0001c0002t0004g0110 a0001c0002t0004g0114 a0001c0002t0004g0130 a0001c0002t0004g0132 a0001c0002t0004g0133 a0001c0002t0004g0200 a0001c0002t0007g0009 a0001c0002t0007g0016 a0001c0002t0007g0018 a0001c0002t0007g0029 a0001c0002t0007g0033 a0001c0002t0007g0045 a0001c0002t0020g0079 a0001c0002t0024g0141 a0001c0002t0024g0162 a0001c0002t0024g0211 a0001c0002t0033g0131 a0001c0002t0033g0202 a0001c0002t0035g0115 a0001c0002t0035g0128 a0001c0002t0038g0244 a0001c0002t0038g0245 a0001c0002t0042g0003 a0001c0002t0043g0004 a0001c0002t0047g0025 a0001c0002t0049g0053 a0001c0002t0067g0201 a0001c0002t0071g0113 a0001c0002t0072g0108 a0001c0002t0073g0165 a0001c0002t0079g0159 a0001c0002t0090g0258 a0001c0007t0001g0088 a0001c0015t0001g0024 a0001c0027t0020g0021 a0002c0006t0001g0008 a0002c0006t0001g0037 a0002c0006t0001g0042 a0002c0006t0001g0067 a0002c0006t0027g0022 a0002c0006t0027g0028 a0002c0006t0030g0052 a0002c0006t0048g0084 a0002c0006t0074g0164 a0002c0016t0001g0011 a0002c0016t0020g0069 a0005c0032t0001g0075 a0006c0025t0030g0027	89	290	0.3069	-12	c.115 others(29): Show c.1159-440_1159-429delTGTTTTTGTTTT	RAPH1	ENSG00000173166.18	transcript	ENST00000319170.10	protein_coding	8/13			chr2	TogoVar
RAPH1_chr2_203428682_203540301	203506844	ATCTATCT others(5): Show ATCTATCTATATC	A A	intron_variant intron_variant	MODIFIER	NA18968.hp1 NA18969.hp2 NA18968.hp1 NA18969.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0025 a0001c0003t0025	a0001c0003t0025g0278 a0001c0003t0025g0280 a0001c0003t0025g0278 a0001c0003t0025g0280	2	290	0.0069	-12	c.1-1 others(27): Show c.1-11503_1-11492delGATATAGATAGA	RAPH1	ENSG00000173166.18	transcript	ENST00000319170.10	protein_coding	1/13			chr2	TogoVar

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