Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	external
SELENOV_chr19_39510139_39525675	39510874	CCTAGAAG others(5): Show CCTAGAAGATTCA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18976.hp1 NA18976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0096 a0001c0001t0001g0096	1	436	0.0023	-12	c.-43 others(23): Show c.-4338_-4327delCTAGAAGATTCA	SELENOV	ENSG00000186838.15	transcript	ENST00000335426.9	protein_coding		4264	chr19	TogoVar
SELE_chr1_169717640_169739079	169731108	TACTCAAA others(5): Show TACTCAAATTTAA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00323.hp2 others(106): Show HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00642.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01069.hp2 HG01071.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp2 HG01123.hp1 HG01168.hp1 HG01175.hp1 HG01192.hp2 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp2 HG01884.hp1 HG01891.hp2 HG01934.hp1 HG01934.hp2 HG01975.hp2 HG02004.hp1 HG02071.hp1 HG02074.hp1 HG02135.hp2 HG02258.hp2 HG02273.hp2 HG02293.hp1 HG02293.hp2 HG02486.hp2 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02698.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02897.hp1 HG02965.hp1 HG03017.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03225.hp2 HG03453.hp2 HG03486.hp1 HG03491.hp1 HG03492.hp1 HG03492.hp2 HG03540.hp1 HG03540.hp2 HG03688.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03927.hp1 HG03942.hp2 HG04115.hp2 HG04204.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp2 NA18944.hp2 NA18948.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18967.hp2 NA18971.hp1 NA18972.hp1 NA18982.hp2 NA19000.hp2 NA19005.hp2 NA19009.hp1 NA19030.hp2 NA19080.hp1 NA19081.hp1 NA19081.hp2 NA19083.hp1 NA19240.hp2 NA20752.hp1 NA20752.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0007 others(1): Show a0001c0001 a0001c0005 a0001c0007 a0001c0018	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0001c0001t0013 a0001c0005t0001 a0001c0007t0001 a0001c0018t0001	a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0021 others(15): Show a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0050 a0001c0001t0002g0015 a0001c0001t0002g0020 a0001c0001t0002g0027 a0001c0001t0002g0043 a0001c0001t0009g0034 a0001c0001t0013g0073 a0001c0005t0001g0010 a0001c0005t0001g0044 a0001c0007t0001g0016 a0001c0018t0001g0047	109	438	0.2489	-12	c.530 others(27): Show c.530-503_530-492delTTAAATTTGAGT	SELE	ENSG00000007908.16	transcript	ENST00000333360.12	protein_coding	4/13		chr1	TogoVar
SELPLG_chr12_108616895_108638894	108628318	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00673.hp1 HG01070.hp1 others(31): Show HG00280.hp2 HG00673.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01192.hp2 HG01255.hp2 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01433.hp1 HG01952.hp1 HG02080.hp1 HG02083.hp2 HG02293.hp2 HG02300.hp1 HG02738.hp2 HG03688.hp1 HG03710.hp1 HG03834.hp1 HG04204.hp1 NA18747.hp2 NA18949.hp2 NA18954.hp2 NA18960.hp2 NA18962.hp2 NA18980.hp2 NA19057.hp2 NA19058.hp2 NA19060.hp2 NA19080.hp2 NA19082.hp2 NA19083.hp2 NA19087.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0002c0021 others(1): Show a0001c0001 a0002c0002 a0002c0021 a0003c0003	a0001c0001t0001 a0002c0002t0001 a0002c0021t0001 others(1): Show a0001c0001t0001 a0002c0002t0001 a0002c0021t0001 a0003c0003t0001	a0001c0001t0001g0205 a0001c0001t0001g0342 a0002c0002t0001g0011 others(23): Show a0001c0001t0001g0205 a0001c0001t0001g0342 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0022 a0002c0002t0001g0029 a0002c0002t0001g0043 a0002c0002t0001g0049 a0002c0002t0001g0066 a0002c0002t0001g0125 a0002c0002t0001g0149 a0002c0002t0001g0150 a0002c0002t0001g0166 a0002c0002t0001g0206 a0002c0002t0001g0207 a0002c0002t0001g0217 a0002c0002t0001g0222 a0002c0002t0001g0223 a0002c0002t0001g0230 a0002c0002t0001g0270 a0002c0002t0001g0275 a0002c0002t0001g0341 a0002c0002t0001g0343 a0002c0002t0001g0349 a0002c0021t0001g0345 a0003c0003t0001g0108	34	486	0.0700	-12	c.-5- others(27): Show c.-5-4018_-5-4007delGTGTGTGTGTGT	SELPLG	ENSG00000110876.10	transcript	ENST00000550948.2	protein_coding	1/1		chr12	TogoVar
SELPLG_chr12_108616895_108638894	108632125	ACCCAGCC others(5): Show ACCCAGCCCTTCC	A A	intron_variant intron_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0108 a0003c0003t0001g0108	1	486	0.0021	-12	c.-6+ others(27): Show c.-6+1603_-6+1614delGGAAGGGCTGGG	SELPLG	ENSG00000110876.10	transcript	ENST00000550948.2	protein_coding	1/1		chr12	TogoVar
SELPLG_chr12_108616895_108638894	108632389	GGTGTGTG others(5): Show GGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02647.hp2 NA18999.hp1 others(4): Show HG02055.hp1 HG02647.hp2 NA18999.hp1 NA19012.hp2 NA19063.hp2 NA19067.hp2 NA21309.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0002c0002t0001 a0003c0003t0004 a0001c0001t0001 a0002c0002t0001 a0003c0003t0004	a0001c0001t0001g0117 a0001c0001t0001g0118 a0002c0002t0001g0276 others(4): Show a0001c0001t0001g0117 a0001c0001t0001g0118 a0002c0002t0001g0276 a0002c0002t0001g0277 a0002c0002t0001g0278 a0002c0002t0001g0279 a0003c0003t0004g0116	7	486	0.0144	-12	c.-6+ others(27): Show c.-6+1339_-6+1350delACACACACACAC	SELPLG	ENSG00000110876.10	transcript	ENST00000550948.2	protein_coding	1/1		chr12	TogoVar
SELPLG_chr12_108616895_108638894	108636776	CTTTTTTT others(5): Show CTTTTTTTTCTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0003 a0004c0004t0003	a0004c0004t0003g0071 a0004c0004t0003g0071	1	486	0.0021	-12	c.-30 others(23): Show c.-3054_-3043delAAAGAAAAAAAA	SELPLG	ENSG00000110876.10	transcript	ENST00000550948.2	protein_coding		2883	chr12	TogoVar
SELP_chr1_169583849_169635124	169603307	CTGTGTGT others(5): Show CTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG03098.hp1 HG03195.hp2 others(1): Show HG02615.hp1 HG03098.hp1 HG03195.hp2 HG03225.hp1	a0001 a0013 a0001 a0013	a0001c0001 a0001c0046 a0013c0023 a0001c0001 a0001c0046 a0013c0023	a0001c0001t0001 a0001c0046t0001 a0013c0023t0001 a0001c0001t0001 a0001c0046t0001 a0013c0023t0001	a0001c0001t0001g0091 a0001c0001t0001g0210 a0001c0046t0001g0183 others(1): Show a0001c0001t0001g0091 a0001c0001t0001g0210 a0001c0046t0001g0183 a0013c0023t0001g0164	4	326	0.0123	-12	c.152 others(28): Show c.1520-108_1520-97delCACACACACACA	SELP	ENSG00000174175.17	transcript	ENST00000263686.11	protein_coding	9/16		chr1	TogoVar
SELP_chr1_169583849_169635124	169610779	AAAACAAA others(5): Show AAAACAAACAAAC	A A	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00423.hp1 HG00639.hp1 others(109): Show HG00408.hp2 HG00423.hp1 HG00639.hp1 HG00639.hp2 HG00733.hp2 HG00735.hp1 HG01069.hp2 HG01071.hp1 HG01081.hp2 HG01109.hp2 HG01167.hp2 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01192.hp2 HG01243.hp2 HG01261.hp1 HG01361.hp2 HG01884.hp2 HG01891.hp2 HG01981.hp2 HG02015.hp2 HG02040.hp2 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02165.hp1 HG02258.hp1 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp2 HG02572.hp2 HG02602.hp2 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02698.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03834.hp1 HG04199.hp1 HG04199.hp2 HG04204.hp2 NA18906.hp1 NA18940.hp2 NA18946.hp2 NA18947.hp1 NA18948.hp2 NA18950.hp1 NA18953.hp2 NA18956.hp2 NA18957.hp1 NA18959.hp1 NA18973.hp2 NA18983.hp1 NA18986.hp1 NA18990.hp1 NA18998.hp2 NA19030.hp2 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19068.hp1 NA19074.hp1 NA19078.hp2 NA19082.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20300.hp1 NA21309.hp1	a0001 a0002 a0003 others(15): Show a0001 a0002 a0003 a0004 a0005 a0007 a0008 a0009 a0010 a0011 a0012 a0013 a0015 a0017 a0018 a0019 a0020 a0021	a0001c0001 a0001c0002 a0001c0019 others(29): Show a0001c0001 a0001c0002 a0001c0019 a0002c0003 a0002c0024 a0003c0005 a0003c0007 a0004c0010 a0004c0016 a0004c0017 a0004c0025 a0005c0004 a0005c0021 a0005c0036 a0007c0013 a0007c0018 a0008c0009 a0009c0011 a0009c0027 a0010c0015 a0010c0029 a0010c0030 a0011c0014 a0012c0020 a0013c0023 a0015c0033 a0015c0034 a0017c0028 a0018c0026 a0019c0043 a0020c0045 a0021c0044	a0001c0001t0001 a0001c0002t0001 a0001c0019t0001 others(31): Show a0001c0001t0001 a0001c0002t0001 a0001c0019t0001 a0002c0003t0001 a0002c0003t0003 a0002c0024t0001 a0003c0005t0001 a0003c0007t0001 a0004c0010t0001 a0004c0016t0001 a0004c0017t0001 a0004c0025t0001 a0005c0004t0001 a0005c0004t0004 a0005c0021t0001 a0005c0036t0002 a0007c0013t0001 a0007c0018t0001 a0008c0009t0001 a0009c0011t0001 a0009c0027t0001 a0010c0015t0001 a0010c0029t0001 a0010c0030t0002 a0011c0014t0001 a0012c0020t0001 a0013c0023t0001 a0015c0033t0001 a0015c0034t0001 a0017c0028t0001 a0018c0026t0001 a0019c0043t0001 a0020c0045t0001 a0021c0044t0001	a0001c0001t0001g0170 a0001c0002t0001g0200 a0001c0019t0001g0018 others(97): Show a0001c0001t0001g0170 a0001c0002t0001g0200 a0001c0019t0001g0018 a0002c0003t0001g0016 a0002c0003t0003g0201 a0002c0024t0001g0198 a0003c0005t0001g0026 a0003c0005t0001g0027 a0003c0005t0001g0195 a0003c0005t0001g0226 a0003c0005t0001g0265 a0003c0005t0001g0266 a0003c0005t0001g0274 a0003c0005t0001g0278 a0003c0005t0001g0283 a0003c0005t0001g0284 a0003c0005t0001g0285 a0003c0005t0001g0286 a0003c0005t0001g0288 a0003c0005t0001g0292 a0003c0005t0001g0293 a0003c0007t0001g0234 a0003c0007t0001g0261 a0003c0007t0001g0264 a0003c0007t0001g0267 a0003c0007t0001g0268 a0003c0007t0001g0270 a0003c0007t0001g0271 a0003c0007t0001g0273 a0003c0007t0001g0276 a0003c0007t0001g0277 a0003c0007t0001g0279 a0003c0007t0001g0280 a0003c0007t0001g0281 a0003c0007t0001g0282 a0003c0007t0001g0287 a0004c0010t0001g0196 a0004c0010t0001g0197 a0004c0010t0001g0199 a0004c0010t0001g0211 a0004c0010t0001g0212 a0004c0016t0001g0171 a0004c0017t0001g0166 a0004c0025t0001g0213 a0005c0004t0001g0004 a0005c0004t0001g0021 a0005c0004t0001g0024 a0005c0004t0001g0025 a0005c0004t0001g0202 a0005c0004t0001g0203 a0005c0004t0001g0225 a0005c0004t0001g0228 a0005c0004t0001g0229 a0005c0004t0001g0230 a0005c0004t0001g0231 a0005c0004t0001g0232 a0005c0004t0001g0235 a0005c0004t0001g0237 a0005c0004t0001g0272 a0005c0004t0001g0290 a0005c0004t0004g0227 a0005c0021t0001g0236 a0005c0021t0001g0238 a0005c0036t0002g0204 a0007c0013t0001g0022 a0007c0013t0001g0158 a0007c0013t0001g0239 a0007c0018t0001g0159 a0007c0018t0001g0160 a0007c0018t0001g0163 a0008c0009t0001g0023 a0008c0009t0001g0233 a0008c0009t0001g0262 a0008c0009t0001g0263 a0008c0009t0001g0275 a0008c0009t0001g0291 a0009c0011t0001g0015 a0009c0011t0001g0148 a0009c0011t0001g0152 a0009c0011t0001g0172 a0009c0027t0001g0150 a0010c0015t0001g0154 a0010c0015t0001g0155 a0010c0015t0001g0156 a0010c0029t0001g0217 a0010c0030t0002g0153 a0011c0014t0001g0192 a0011c0014t0001g0193 a0011c0014t0001g0194 a0012c0020t0001g0147 a0012c0020t0001g0149 a0013c0023t0001g0161 a0013c0023t0001g0164 a0015c0033t0001g0269 a0015c0034t0001g0294 a0017c0028t0001g0151 a0018c0026t0001g0157 a0019c0043t0001g0289 a0020c0045t0001g0162 a0021c0044t0001g0240	112	326	0.3436	-12	c.114 others(29): Show c.1147+701_1147+712delGTTTGTTTGTTT	SELP	ENSG00000174175.17	transcript	ENST00000263686.11	protein_coding	7/16		chr1	TogoVar
SEM1_chr7_96683762_96714846	96703972	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0115 a0001c0001t0001g0115	1	354	0.0028	-12	c.76+ others(27): Show c.76+5704_76+5715delGTGTGTGTGTGT	SEM1	ENSG00000127922.10	transcript	ENST00000248566.4	protein_coding	1/2		chr7	TogoVar
SEMA3A_chr7_83950777_84199789	83965627	CATATATA others(5): Show CATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02015.hp2 HG02015.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0046 a0001c0002t0002g0046	1	276	0.0036	-12	c.171 others(31): Show c.1718-2292_1718-2281delATATATATATAT	SEMA3A	ENSG00000075213.11	transcript	ENST00000265362.9	protein_coding	15/16		chr7	TogoVar
SEMA3A_chr7_83950777_84199789	83965656	ATATATAT others(5): Show ATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG02647.hp2 HG01071.hp2 HG02647.hp2	a0001 a0001	a0001c0003 a0001c0004 a0001c0003 a0001c0004	a0001c0003t0012 a0001c0004t0016 a0001c0003t0012 a0001c0004t0016	a0001c0003t0012g0190 a0001c0004t0016g0009 a0001c0003t0012g0190 a0001c0004t0016g0009	2	276	0.0073	-12	c.171 others(31): Show c.1718-2321_1718-2310delAATATATATATA	SEMA3A	ENSG00000075213.11	transcript	ENST00000265362.9	protein_coding	15/16		chr7	TogoVar
SEMA3A_chr7_83950777_84199789	83986966	TCTTTCAC others(5): Show TCTTTCACACACA	T T	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0016 a0001c0012t0016	a0001c0012t0016g0207 a0001c0012t0016g0207	1	276	0.0036	-12	c.145 others(31): Show c.1453-1501_1453-1490delTGTGTGTGAAAG	SEMA3A	ENSG00000075213.11	transcript	ENST00000265362.9	protein_coding	12/16		chr7	TogoVar
SEMA3A_chr7_83950777_84199789	84091167	GGAAAGAA others(5): Show GGAAAGAAAGAAA	G G	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03225.hp2 HG03239.hp2 others(1): Show HG03209.hp1 HG03225.hp2 HG03239.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0005 a0001c0001 a0001c0004 a0001c0005	a0001c0001t0004 a0001c0004t0012 a0001c0005t0001 a0001c0001t0004 a0001c0004t0012 a0001c0005t0001	a0001c0001t0004g0250 a0001c0004t0012g0070 a0001c0005t0001g0002 others(1): Show a0001c0001t0004g0250 a0001c0004t0012g0070 a0001c0005t0001g0002 a0001c0005t0001g0164	4	276	0.0145	-12	c.453 others(31): Show c.453+19291_453+19302delTTTCTTTCTTTC	SEMA3A	ENSG00000075213.11	transcript	ENST00000265362.9	protein_coding	4/16		chr7	TogoVar
SEMA3A_chr7_83950777_84199789	84091345	GAAGGAAG others(5): Show GAAGGAAGGAAGA	G G	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0013 a0001c0003t0013	a0001c0003t0013g0086 a0001c0003t0013g0086	1	276	0.0036	-12	c.453 others(31): Show c.453+19113_453+19124delTCTTCCTTCCTT	SEMA3A	ENSG00000075213.11	transcript	ENST00000265362.9	protein_coding	4/16		chr7	TogoVar
SEMA3A_chr7_83950777_84199789	84095358	CATATATA others(5): Show CATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01071.hp1 HG02717.hp1 others(1): Show HG01069.hp2 HG01071.hp1 HG02717.hp1 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0005 a0001c0001 a0001c0004 a0001c0005	a0001c0001t0007 a0001c0004t0008 a0001c0005t0009 a0001c0001t0007 a0001c0004t0008 a0001c0005t0009	a0001c0001t0007g0111 a0001c0001t0007g0134 a0001c0004t0008g0157 others(1): Show a0001c0001t0007g0111 a0001c0001t0007g0134 a0001c0004t0008g0157 a0001c0005t0009g0249	4	276	0.0145	-12	c.453 others(31): Show c.453+15100_453+15111delATATATATATAT	SEMA3A	ENSG00000075213.11	transcript	ENST00000265362.9	protein_coding	4/16		chr7	TogoVar
SEMA3A_chr7_83950777_84199789	84136960	AGAAGGAA others(5): Show AGAAGGAAGGAAG	A A	intron_variant intron_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0010 a0001c0005t0010	a0001c0005t0010g0135 a0001c0005t0010g0135	1	276	0.0036	-12	c.113 others(29): Show c.113-2021_113-2010delCTTCCTTCCTTC	SEMA3A	ENSG00000075213.11	transcript	ENST00000265362.9	protein_coding	1/16		chr7	TogoVar
SEMA3A_chr7_83950777_84199789	84143950	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02129.hp1 HG02129.hp2 HG02132.hp2 others(17): Show HG02129.hp1 HG02129.hp2 HG02132.hp2 HG02155.hp2 HG02165.hp1 HG02809.hp1 HG03209.hp1 HG03490.hp2 HG03492.hp2 HG04115.hp1 NA18956.hp1 NA18960.hp1 NA18981.hp2 NA18991.hp1 NA19001.hp2 NA19011.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19082.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0009 others(5): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0009 a0001c0002t0002 a0001c0002t0038 a0001c0003t0008 a0001c0004t0012 a0001c0005t0001	a0001c0001t0001g0064 a0001c0001t0001g0112 a0001c0001t0001g0254 others(17): Show a0001c0001t0001g0064 a0001c0001t0001g0112 a0001c0001t0001g0254 a0001c0001t0003g0110 a0001c0001t0009g0061 a0001c0002t0002g0018 a0001c0002t0002g0038 a0001c0002t0002g0062 a0001c0002t0002g0063 a0001c0002t0002g0065 a0001c0002t0002g0066 a0001c0002t0002g0067 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0179 a0001c0002t0002g0233 a0001c0002t0038g0020 a0001c0003t0008g0071 a0001c0004t0012g0070 a0001c0005t0001g0191	20	276	0.0725	-12	c.113 others(29): Show c.113-9011_113-9000delGTGTGTGTGTGT	SEMA3A	ENSG00000075213.11	transcript	ENST00000265362.9	protein_coding	1/16		chr7	TogoVar
SEMA3A_chr7_83950777_84199789	84160223	GTCTATCT others(5): Show GTCTATCTATCTA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00544.hp2 HG00738.hp1 others(60): Show HG00099.hp1 HG00544.hp2 HG00738.hp1 HG01099.hp2 HG01106.hp2 HG01167.hp1 HG01192.hp1 HG01243.hp1 HG01258.hp2 HG01515.hp2 HG01891.hp2 HG01934.hp2 HG01978.hp2 HG02083.hp1 HG02148.hp1 HG02155.hp1 HG02258.hp2 HG02273.hp2 HG02559.hp2 HG02572.hp2 HG02615.hp2 HG02622.hp1 HG02647.hp1 HG02809.hp1 HG02809.hp2 HG02895.hp1 HG02922.hp2 HG02976.hp1 HG03209.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp1 HG03471.hp1 HG03490.hp1 HG03540.hp2 HG03579.hp1 HG03927.hp1 HG03942.hp1 HG03942.hp2 HG04204.hp1 NA18612.hp1 NA18906.hp1 NA18941.hp2 NA18945.hp2 NA18957.hp2 NA18964.hp1 NA18977.hp1 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18985.hp2 NA18990.hp2 NA19007.hp2 NA19010.hp2 NA19011.hp2 NA19030.hp2 NA19062.hp1 NA19076.hp2 NA19080.hp1 NA19083.hp1 NA19086.hp2 NA19240.hp1 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0012 a0002c0006	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(16): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0002t0002 a0001c0003t0006 a0001c0003t0008 a0001c0003t0014 a0001c0004t0005 a0001c0004t0012 a0001c0004t0036 a0001c0005t0001 a0001c0005t0004 a0001c0005t0011 a0001c0012t0016 a0002c0006t0010	a0001c0001t0001g0032 a0001c0001t0001g0123 a0001c0001t0001g0173 others(60): Show a0001c0001t0001g0032 a0001c0001t0001g0123 a0001c0001t0001g0173 a0001c0001t0001g0200 a0001c0001t0003g0029 a0001c0001t0003g0090 a0001c0001t0003g0098 a0001c0001t0003g0124 a0001c0001t0003g0145 a0001c0001t0003g0146 a0001c0001t0003g0261 a0001c0001t0004g0073 a0001c0001t0004g0218 a0001c0001t0004g0223 a0001c0001t0004g0250 a0001c0001t0007g0092 a0001c0001t0007g0185 a0001c0001t0007g0192 a0001c0001t0007g0231 a0001c0001t0007g0270 a0001c0001t0009g0013 a0001c0001t0009g0162 a0001c0001t0009g0213 a0001c0001t0009g0237 a0001c0001t0009g0242 a0001c0001t0009g0243 a0001c0001t0009g0244 a0001c0001t0010g0180 a0001c0001t0011g0107 a0001c0001t0011g0153 a0001c0001t0011g0195 a0001c0002t0002g0022 a0001c0002t0002g0049 a0001c0002t0002g0097 a0001c0002t0002g0099 a0001c0002t0002g0109 a0001c0002t0002g0172 a0001c0002t0002g0178 a0001c0002t0002g0268 a0001c0002t0002g0274 a0001c0003t0006g0072 a0001c0003t0006g0246 a0001c0003t0008g0069 a0001c0003t0008g0071 a0001c0003t0008g0227 a0001c0003t0014g0088 a0001c0003t0014g0089 a0001c0003t0014g0220 a0001c0004t0005g0016 a0001c0004t0005g0045 a0001c0004t0005g0253 a0001c0004t0012g0070 a0001c0004t0036g0012 a0001c0005t0001g0011 a0001c0005t0001g0074 a0001c0005t0001g0164 a0001c0005t0004g0006 a0001c0005t0004g0036 a0001c0005t0004g0037 a0001c0005t0011g0177 a0001c0012t0016g0207 a0002c0006t0010g0004 a0002c0006t0010g0005	63	276	0.2283	-12	c.113 others(31): Show c.113-25284_113-25273delTAGATAGATAGA	SEMA3A	ENSG00000075213.11	transcript	ENST00000265362.9	protein_coding	1/16		chr7	TogoVar
SEMA3A_chr7_83950777_84199789	84196395	CTGCCGTT others(5): Show CTGCCGTTGGATG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp1 HG00621.hp1 HG00544.hp1 HG00621.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0032 a0001c0001t0001 a0001c0003t0032	a0001c0001t0001g0167 a0001c0003t0032g0166 a0001c0001t0001g0167 a0001c0003t0032g0166	2	276	0.0073	-12	c.-18 others(23): Show c.-1821_-1810delCATCCAACGGCA	SEMA3A	ENSG00000075213.11	transcript	ENST00000265362.9	protein_coding		1607	chr7	TogoVar
SEMA3C_chr7_80737538_80924051	80750463	TATATATA others(5): Show TATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0003 a0003	a0003c0011 a0003c0011	a0003c0011t0004 a0003c0011t0004	a0003c0011t0004g0094 a0003c0011t0004g0094	1	244	0.0041	-12	c.171 others(29): Show c.1711+794_1711+805delGTATATATATAT	SEMA3C	ENSG00000075223.14	transcript	ENST00000265361.8	protein_coding	16/17		chr7	TogoVar
SEMA3C_chr7_80737538_80924051	80851504	TAAAAAAA others(5): Show TAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00438.hp2 HG00558.hp1 others(20): Show HG00423.hp2 HG00438.hp2 HG00558.hp1 HG00597.hp2 HG02040.hp2 NA18942.hp1 NA18949.hp1 NA18950.hp2 NA18953.hp1 NA18962.hp2 NA18963.hp1 NA18965.hp2 NA18966.hp2 NA18972.hp1 NA18984.hp2 NA18990.hp1 NA18994.hp2 NA19060.hp2 NA19063.hp1 NA19066.hp2 NA19074.hp1 NA19079.hp2 NA19085.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0013 a0002c0005	a0001c0001t0001 a0001c0002t0001 a0001c0003t0002 others(2): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0002 a0001c0013t0002 a0002c0005t0001	a0001c0001t0001g0003 a0001c0001t0001g0008 a0001c0001t0001g0060 others(20): Show a0001c0001t0001g0003 a0001c0001t0001g0008 a0001c0001t0001g0060 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0079 a0001c0001t0001g0082 a0001c0001t0001g0227 a0001c0002t0001g0041 a0001c0002t0001g0070 a0001c0002t0001g0072 a0001c0002t0001g0078 a0001c0002t0001g0081 a0001c0002t0001g0084 a0001c0002t0001g0160 a0001c0003t0002g0001 a0001c0003t0002g0002 a0001c0003t0002g0007 a0001c0013t0002g0083 a0002c0005t0001g0071 a0002c0005t0001g0077	23	244	0.0943	-12	c.104 others(31): Show c.104-22771_104-22760delTTTTTTTTTTTT	SEMA3C	ENSG00000075223.14	transcript	ENST00000265361.8	protein_coding	2/17		chr7	TogoVar
SEMA3C_chr7_80737538_80924051	80866265	GACTAAAA others(5): Show GACTAAAAGACAA	G G	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01168.hp2 HG01255.hp2 others(15): Show HG01106.hp1 HG01168.hp2 HG01255.hp2 HG02055.hp2 HG02559.hp1 HG02622.hp1 HG02723.hp2 HG02818.hp2 HG02886.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03540.hp1 HG03704.hp1 HG04115.hp2 NA18906.hp2 NA19043.hp1 NA19240.hp2	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0002 a0001c0006 others(5): Show a0001c0001 a0001c0002 a0001c0006 a0001c0007 a0001c0008 a0001c0009 a0003c0011 a0004c0021	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 others(6): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0006t0001 a0001c0007t0003 a0001c0008t0005 a0001c0009t0001 a0003c0011t0004 a0004c0021t0003	a0001c0001t0001g0030 a0001c0001t0001g0036 a0001c0001t0001g0037 others(15): Show a0001c0001t0001g0030 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0047 a0001c0001t0001g0176 a0001c0001t0004g0046 a0001c0002t0001g0067 a0001c0002t0001g0069 a0001c0002t0001g0224 a0001c0002t0001g0239 a0001c0006t0001g0172 a0001c0007t0003g0050 a0001c0007t0003g0243 a0001c0008t0005g0171 a0001c0009t0001g0048 a0003c0011t0004g0068 a0004c0021t0003g0049	18	244	0.0738	-12	c.104 others(31): Show c.104-37532_104-37521delTTGTCTTTTAGT	SEMA3C	ENSG00000075223.14	transcript	ENST00000265361.8	protein_coding	2/17		chr7	TogoVar
SEMA3C_chr7_80737538_80924051	80874447	GTTATTTA others(5): Show GTTATTTATTTAT	G G	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00423.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0131 a0001c0002t0001g0131	1	244	0.0041	-12	c.103 others(31): Show c.103+42220_103+42231delATAAATAAATAA	SEMA3C	ENSG00000075223.14	transcript	ENST00000265361.8	protein_coding	2/17		chr7	TogoVar
SEMA3C_chr7_80737538_80924051	80875133	TTTTTCCT others(5): Show TTTTTCCTCATAG	T T	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG01243.hp1 HG02129.hp1 others(14): Show HG00597.hp1 HG01243.hp1 HG02129.hp1 HG02145.hp1 HG02486.hp2 HG02723.hp1 HG02922.hp1 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03195.hp2 HG03209.hp2 HG03516.hp2 NA18971.hp1 NA18972.hp2 NA19240.hp1	a0001 a0002 a0004 others(2): Show a0001 a0002 a0004 a0005 a0007	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0007 a0001c0009 a0001c0023 a0002c0010 a0004c0015 a0005c0016 a0007c0026	a0001c0001t0001 a0001c0002t0001 a0001c0002t0004 others(9): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0004 a0001c0003t0002 a0001c0004t0001 a0001c0007t0003 a0001c0009t0001 a0001c0023t0006 a0002c0010t0001 a0004c0015t0003 a0005c0016t0001 a0007c0026t0003	a0001c0001t0001g0035 a0001c0001t0001g0057 a0001c0002t0001g0054 others(14): Show a0001c0001t0001g0035 a0001c0001t0001g0057 a0001c0002t0001g0054 a0001c0002t0001g0061 a0001c0002t0001g0062 a0001c0002t0001g0080 a0001c0002t0004g0052 a0001c0003t0002g0034 a0001c0004t0001g0065 a0001c0007t0003g0056 a0001c0009t0001g0045 a0001c0023t0006g0055 a0002c0010t0001g0033 a0004c0015t0003g0051 a0004c0015t0003g0053 a0005c0016t0001g0165 a0007c0026t0003g0066	17	244	0.0697	-12	c.103 others(31): Show c.103+41534_103+41545delCTATGAGGAAAA	SEMA3C	ENSG00000075223.14	transcript	ENST00000265361.8	protein_coding	2/17		chr7	TogoVar
SEMA3C_chr7_80737538_80924051	80881164	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02976.hp1 HG02145.hp1 HG02976.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0061 a0001c0002t0001g0062 a0001c0002t0001g0061 a0001c0002t0001g0062	2	244	0.0082	-12	c.103 others(31): Show c.103+35503_103+35514delGTGTGTGTGTGT	SEMA3C	ENSG00000075223.14	transcript	ENST00000265361.8	protein_coding	2/17		chr7	TogoVar
SEMA3C_chr7_80737538_80924051	80882412	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG03098.hp1 HG02723.hp1 HG03098.hp1	a0001 a0007 a0001 a0007	a0001c0009 a0007c0026 a0001c0009 a0007c0026	a0001c0009t0001 a0007c0026t0003 a0001c0009t0001 a0007c0026t0003	a0001c0009t0001g0045 a0007c0026t0003g0066 a0001c0009t0001g0045 a0007c0026t0003g0066	2	244	0.0082	-12	c.103 others(31): Show c.103+34255_103+34266delAAAAAAAAAAAA	SEMA3C	ENSG00000075223.14	transcript	ENST00000265361.8	protein_coding	2/17		chr7	TogoVar
SEMA3C_chr7_80737538_80924051	80887353	ATGTGAGT others(5): Show ATGTGAGTTTCTC	A A	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0057 a0001c0001t0001g0057	1	244	0.0041	-12	c.103 others(31): Show c.103+29314_103+29325delGAGAAACTCACA	SEMA3C	ENSG00000075223.14	transcript	ENST00000265361.8	protein_coding	2/17		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85042533	CAAGGCAA others(5): Show CAAGGCAATGGTA	C C	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0035 a0002c0002t0035	a0002c0002t0035g0231 a0002c0002t0035g0231	1	266	0.0038	-12	c.862 others(27): Show c.862-260_862-249delTACCATTGCCTT	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	9/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85050072	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02723.hp1 NA19240.hp1 HG02451.hp1 HG02723.hp1 NA19240.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0031 a0001c0004t0001 a0001c0004t0031	a0001c0004t0001g0048 a0001c0004t0001g0070 a0001c0004t0031g0152 a0001c0004t0001g0048 a0001c0004t0001g0070 a0001c0004t0031g0152	3	266	0.0113	-12	c.861 others(29): Show c.861+5633_861+5644delGTGTGTGTGTGT	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	9/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85052449	AAAAACTA others(5): Show AAAAACTAAAACC	A A	intron_variant intron_variant	MODIFIER	NA18946.hp2 NA18993.hp2 NA18946.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0068 a0001c0001t0001g0069	2	266	0.0075	-12	c.861 others(29): Show c.861+3256_861+3267delGGTTTTAGTTTT	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	9/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85055645	CATATATA others(5): Show CATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG02040.hp1 HG02559.hp2 others(3): Show HG00423.hp2 HG02040.hp1 HG02559.hp2 HG03209.hp1 NA18967.hp2 NA19000.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0003 a0002c0002t0010 others(1): Show a0001c0001t0001 a0002c0002t0003 a0002c0002t0010 a0002c0002t0013	a0001c0001t0001g0076 a0002c0002t0003g0016 a0002c0002t0003g0018 others(3): Show a0001c0001t0001g0076 a0002c0002t0003g0016 a0002c0002t0003g0018 a0002c0002t0003g0051 a0002c0002t0010g0191 a0002c0002t0013g0147	6	266	0.0226	-12	c.861 others(25): Show c.861+60_861+71delATATATATATAT	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	9/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85056890	CATATATA others(5): Show CATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02109.hp2 HG02896.hp2 others(1): Show HG01891.hp1 HG02109.hp2 HG02896.hp2 HG03139.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0016 a0002c0005t0036 a0002c0005t0016 a0002c0005t0036	a0002c0005t0016g0158 a0002c0005t0016g0159 a0002c0005t0016g0160 others(1): Show a0002c0005t0016g0158 a0002c0005t0016g0159 a0002c0005t0016g0160 a0002c0005t0036g0190	4	266	0.0150	-12	c.719 others(29): Show c.719-1043_719-1032delATATATATATAT	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	8/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85116379	TATAAATA others(5): Show TATAAATATATAC	T T	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG06807.hp2 HG02886.hp1 HG06807.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0015 a0002c0002t0015	a0002c0002t0015g0134 a0002c0002t0015g0135 a0002c0002t0015g0134 a0002c0002t0015g0135	2	266	0.0075	-12	c.151 others(29): Show c.151+5350_151+5361delGTATATATTTAT	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	3/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85117763	AGTATGTA others(5): Show AGTATGTATGTAT	A A	intron_variant intron_variant	MODIFIER	HG02109.hp1 NA20905.hp2 HG02109.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0008 a0001c0001t0002 a0001c0001t0008	a0001c0001t0002g0224 a0001c0001t0008g0255 a0001c0001t0002g0224 a0001c0001t0008g0255	2	266	0.0075	-12	c.151 others(29): Show c.151+3966_151+3977delATACATACATAC	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	3/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85153534	CATCTATC others(5): Show CATCTATCTATCT	C C	intron_variant intron_variant	MODIFIER	NA18612.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0155 a0001c0001t0004g0155	1	266	0.0038	-12	c.-41 others(25): Show c.-41+62_-41+73delAGATAGATAGAT	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	2/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85168814	GAAAGATG others(5): Show GAAAGATGAAAGA	G G	intron_variant intron_variant	MODIFIER	HG03195.hp2 NA18953.hp1 NA19087.hp1 HG03195.hp2 NA18953.hp1 NA19087.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0004 a0002c0002t0007 a0001c0001t0004 a0002c0002t0007	a0001c0001t0004g0230 a0002c0002t0007g0163 a0002c0002t0007g0173 a0001c0001t0004g0230 a0002c0002t0007g0163 a0002c0002t0007g0173	3	266	0.0113	-12	c.-17 others(33): Show c.-172-15087_-172-15076delTCTTTCATCTTT	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	1/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85168820	TGAAAGAA others(5): Show TGAAAGAAAGAAA	T T	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01934.hp2 HG02040.hp1 others(2): Show HG00738.hp1 HG01934.hp2 HG02040.hp1 HG02258.hp1 NA18944.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0012 a0002c0002 a0001c0001 a0001c0012 a0002c0002	a0001c0001t0004 a0001c0001t0030 a0001c0012t0045 others(1): Show a0001c0001t0004 a0001c0001t0030 a0001c0012t0045 a0002c0002t0003	a0001c0001t0004g0157 a0001c0001t0030g0013 a0001c0012t0045g0247 others(2): Show a0001c0001t0004g0157 a0001c0001t0030g0013 a0001c0012t0045g0247 a0002c0002t0003g0012 a0002c0002t0003g0051	5	266	0.0188	-12	c.-17 others(33): Show c.-172-15093_-172-15082delTTTCTTTCTTTC	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	1/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85173114	TAAAAAGA others(5): Show TAAAAAGAGAGAA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00280.hp1 others(41): Show HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00408.hp1 HG00609.hp2 HG00639.hp2 HG00642.hp1 HG00673.hp2 HG00738.hp2 HG01074.hp2 HG01099.hp1 HG01175.hp1 HG01256.hp1 HG01258.hp2 HG01346.hp1 HG01515.hp2 HG02155.hp2 HG02165.hp2 HG02615.hp1 HG02630.hp1 HG02647.hp1 HG02809.hp2 HG02922.hp1 HG03195.hp2 NA18612.hp1 NA18943.hp1 NA18950.hp1 NA18951.hp2 NA18953.hp1 NA18963.hp2 NA18964.hp1 NA18968.hp2 NA18969.hp2 NA18977.hp2 NA18988.hp2 NA18993.hp1 NA18994.hp1 NA18998.hp2 NA19005.hp2 NA19012.hp2 NA19062.hp2 NA19063.hp2 NA19077.hp2 NA19087.hp1	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0006	a0001c0001 a0001c0006 a0001c0010 others(4): Show a0001c0001 a0001c0006 a0001c0010 a0002c0002 a0002c0003 a0005c0009 a0006c0014	a0001c0001t0001 a0001c0001t0004 a0001c0001t0033 others(9): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0033 a0001c0006t0019 a0001c0006t0029 a0001c0010t0004 a0002c0002t0007 a0002c0002t0035 a0002c0003t0006 a0002c0003t0034 a0005c0009t0004 a0006c0014t0004	a0001c0001t0001g0139 a0001c0001t0004g0155 a0001c0001t0004g0165 others(41): Show a0001c0001t0001g0139 a0001c0001t0004g0155 a0001c0001t0004g0165 a0001c0001t0004g0167 a0001c0001t0004g0168 a0001c0001t0004g0169 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0176 a0001c0001t0004g0179 a0001c0001t0004g0184 a0001c0001t0004g0188 a0001c0001t0004g0230 a0001c0001t0004g0235 a0001c0001t0004g0243 a0001c0001t0033g0164 a0001c0006t0019g0186 a0001c0006t0019g0187 a0001c0006t0029g0138 a0001c0010t0004g0185 a0002c0002t0007g0163 a0002c0002t0007g0166 a0002c0002t0007g0173 a0002c0002t0007g0177 a0002c0002t0007g0178 a0002c0002t0007g0180 a0002c0002t0007g0181 a0002c0002t0007g0182 a0002c0002t0007g0183 a0002c0002t0035g0231 a0002c0003t0006g0170 a0002c0003t0006g0171 a0002c0003t0006g0172 a0002c0003t0006g0232 a0002c0003t0006g0233 a0002c0003t0006g0234 a0002c0003t0006g0236 a0002c0003t0006g0237 a0002c0003t0006g0238 a0002c0003t0006g0239 a0002c0003t0006g0240 a0002c0003t0034g0241 a0005c0009t0004g0242 a0006c0014t0004g0162	44	266	0.1654	-12	c.-17 others(33): Show c.-173+13552_-173+13563delTTCTCTCTTTTT	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	1/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85176793	TAGAGAGA others(5): Show TAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01952.hp1 HG01981.hp2 others(2): Show HG01496.hp1 HG01952.hp1 HG01981.hp2 HG02293.hp1 HG02300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0205 a0001c0001t0002g0206 a0001c0001t0002g0207 others(2): Show a0001c0001t0002g0205 a0001c0001t0002g0206 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0002g0228	5	266	0.0188	-12	c.-17 others(31): Show c.-173+9873_-173+9884delCTCTCTCTCTCT	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	1/18		chr7	TogoVar
SEMA3D_chr7_84990553_85192056	85185090	GGAAAAGG others(5): Show GGAAAAGGAGAAC	G G	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG03098.hp2 HG02970.hp2 HG03098.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0048 a0002c0002t0006 a0001c0001t0048 a0002c0002t0006	a0001c0001t0048g0266 a0002c0002t0006g0161 a0001c0001t0048g0266 a0002c0002t0006g0161	2	266	0.0075	-12	c.-17 others(31): Show c.-173+1576_-173+1587delGTTCTCCTTTTC	SEMA3D	ENSG00000153993.14	transcript	ENST00000284136.11	protein_coding	1/18		chr7	TogoVar
SEMA3E_chr7_83358238_83654139	83360998	CTCTCTCT others(5): Show CTCTCTCTCTCTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0058 a0001c0010t0058	a0001c0010t0058g0060 a0001c0010t0058g0060	1	226	0.0044	-12	c.65 others(23): Show c.6576_*6587delAAGAGAGAGAGA	SEMA3E	ENSG00000170381.15	transcript	ENST00000643230.2	protein_coding		2239	chr7	TogoVar
SEMA3E_chr7_83358238_83654139	83429724	CCACACTC others(5): Show CCACACTCCTGCA	C C	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0090 a0002c0004t0090	a0002c0004t0090g0176 a0002c0004t0090g0176	1	226	0.0044	-12	c.457 others(31): Show c.457-11253_457-11242delTGCAGGAGTGTG	SEMA3E	ENSG00000170381.15	transcript	ENST00000643230.2	protein_coding	4/16		chr7	TogoVar
SEMA3E_chr7_83358238_83654139	83443916	GATATATA others(5): Show GATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00735.hp2 HG01168.hp1 others(30): Show HG00438.hp1 HG00735.hp2 HG01168.hp1 HG01243.hp1 HG01496.hp2 HG01993.hp2 HG02027.hp1 HG02083.hp1 HG02300.hp1 HG02886.hp1 HG03239.hp2 HG03490.hp2 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03579.hp2 HG03704.hp1 NA18906.hp2 NA18939.hp2 NA18942.hp2 NA18946.hp2 NA18950.hp1 NA18953.hp1 NA18953.hp2 NA18954.hp2 NA18963.hp1 NA18984.hp2 NA19002.hp1 NA19012.hp2 NA19054.hp2 NA19058.hp1 NA19074.hp2 NA19077.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0010 a0002c0004 others(1): Show a0001c0001 a0001c0010 a0002c0004 a0004c0013	a0001c0001t0093 a0001c0010t0058 a0001c0010t0059 others(17): Show a0001c0001t0093 a0001c0010t0058 a0001c0010t0059 a0001c0010t0060 a0002c0004t0003 a0002c0004t0005 a0002c0004t0007 a0002c0004t0010 a0002c0004t0012 a0002c0004t0014 a0002c0004t0031 a0002c0004t0032 a0002c0004t0049 a0002c0004t0074 a0002c0004t0085 a0002c0004t0089 a0002c0004t0091 a0002c0004t0096 a0002c0004t0101 a0004c0013t0012	a0001c0001t0093g0183 a0001c0010t0058g0060 a0001c0010t0059g0059 others(30): Show a0001c0001t0093g0183 a0001c0010t0058g0060 a0001c0010t0059g0059 a0001c0010t0060g0061 a0002c0004t0003g0090 a0002c0004t0003g0100 a0002c0004t0003g0105 a0002c0004t0003g0132 a0002c0004t0003g0134 a0002c0004t0003g0160 a0002c0004t0005g0033 a0002c0004t0007g0206 a0002c0004t0007g0211 a0002c0004t0007g0214 a0002c0004t0007g0219 a0002c0004t0007g0220 a0002c0004t0007g0223 a0002c0004t0010g0205 a0002c0004t0010g0225 a0002c0004t0012g0028 a0002c0004t0012g0036 a0002c0004t0012g0039 a0002c0004t0014g0133 a0002c0004t0031g0178 a0002c0004t0032g0181 a0002c0004t0049g0015 a0002c0004t0074g0162 a0002c0004t0085g0095 a0002c0004t0089g0179 a0002c0004t0091g0189 a0002c0004t0096g0212 a0002c0004t0101g0221 a0004c0013t0012g0023	33	226	0.1460	-12	c.456 others(31): Show c.456+22554_456+22565delATATATATATAT	SEMA3E	ENSG00000170381.15	transcript	ENST00000643230.2	protein_coding	4/16		chr7	TogoVar
SEMA3E_chr7_83358238_83654139	83507424	CTGTGTGT others(5): Show CTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01884.hp2 HG01891.hp2 others(8): Show HG00639.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp2 HG02257.hp1 HG02559.hp2 HG02965.hp1 HG03098.hp2 HG03139.hp2 HG03195.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0022 a0001c0005t0006 a0001c0005t0013 others(4): Show a0001c0001t0022 a0001c0005t0006 a0001c0005t0013 a0001c0005t0015 a0001c0005t0021 a0001c0005t0028 a0001c0005t0086	a0001c0001t0022g0199 a0001c0001t0022g0200 a0001c0005t0006g0042 others(8): Show a0001c0001t0022g0199 a0001c0001t0022g0200 a0001c0005t0006g0042 a0001c0005t0013g0052 a0001c0005t0013g0054 a0001c0005t0015g0201 a0001c0005t0015g0202 a0001c0005t0021g0157 a0001c0005t0028g0069 a0001c0005t0028g0070 a0001c0005t0086g0154	11	226	0.0487	-12	c.116 others(31): Show c.116-17162_116-17151delCACACACACACA	SEMA3E	ENSG00000170381.15	transcript	ENST00000643230.2	protein_coding	1/16		chr7	TogoVar
SEMA3E_chr7_83358238_83654139	83546321	GGTGTGTG others(5): Show GGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00597.hp2 HG00609.hp1 others(47): Show HG00408.hp1 HG00597.hp2 HG00609.hp1 HG00639.hp1 HG00639.hp2 HG00735.hp2 HG00738.hp1 HG01081.hp2 HG01168.hp1 HG01496.hp1 HG01515.hp2 HG01884.hp2 HG01934.hp1 HG01993.hp2 HG02056.hp2 HG02280.hp2 HG02451.hp1 HG02523.hp2 HG02572.hp2 HG02615.hp2 HG02647.hp1 HG02717.hp1 HG02965.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03195.hp2 HG03209.hp1 HG03516.hp1 HG03540.hp2 HG03654.hp1 HG06807.hp2 NA18522.hp1 NA18942.hp2 NA18945.hp2 NA18946.hp2 NA18950.hp1 NA18951.hp1 NA18953.hp2 NA18954.hp2 NA18963.hp1 NA19004.hp2 NA19012.hp2 NA19030.hp2 NA19043.hp1 NA19054.hp2 NA19074.hp2 NA19077.hp2 NA19240.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0002c0004	a0001c0001t0029 a0001c0001t0051 a0001c0001t0052 others(29): Show a0001c0001t0029 a0001c0001t0051 a0001c0001t0052 a0001c0001t0076 a0001c0001t0077 a0001c0001t0078 a0001c0001t0093 a0001c0001t0098 a0001c0001t0100 a0001c0002t0010 a0001c0002t0016 a0001c0002t0034 a0001c0002t0057 a0001c0002t0095 a0001c0003t0001 a0001c0003t0002 a0001c0003t0010 a0001c0003t0016 a0001c0005t0006 a0001c0005t0013 a0001c0005t0086 a0001c0005t0087 a0001c0006t0053 a0001c0006t0055 a0001c0006t0082 a0002c0004t0007 a0002c0004t0010 a0002c0004t0012 a0002c0004t0018 a0002c0004t0032 a0002c0004t0096 a0002c0004t0101	a0001c0001t0029g0172 a0001c0001t0051g0046 a0001c0001t0052g0050 others(47): Show a0001c0001t0029g0172 a0001c0001t0051g0046 a0001c0001t0052g0050 a0001c0001t0076g0158 a0001c0001t0077g0153 a0001c0001t0078g0170 a0001c0001t0093g0183 a0001c0001t0098g0215 a0001c0001t0100g0209 a0001c0002t0010g0207 a0001c0002t0016g0216 a0001c0002t0016g0218 a0001c0002t0034g0213 a0001c0002t0034g0224 a0001c0002t0057g0053 a0001c0002t0095g0217 a0001c0003t0001g0150 a0001c0003t0001g0151 a0001c0003t0002g0152 a0001c0003t0002g0155 a0001c0003t0010g0208 a0001c0003t0010g0222 a0001c0003t0016g0210 a0001c0005t0006g0042 a0001c0005t0006g0043 a0001c0005t0006g0044 a0001c0005t0006g0045 a0001c0005t0006g0049 a0001c0005t0013g0052 a0001c0005t0013g0057 a0001c0005t0086g0154 a0001c0005t0087g0156 a0001c0006t0053g0047 a0001c0006t0055g0056 a0001c0006t0082g0167 a0002c0004t0007g0206 a0002c0004t0007g0211 a0002c0004t0007g0214 a0002c0004t0007g0219 a0002c0004t0007g0220 a0002c0004t0007g0223 a0002c0004t0010g0205 a0002c0004t0010g0225 a0002c0004t0012g0028 a0002c0004t0018g0168 a0002c0004t0018g0169 a0002c0004t0018g0171 a0002c0004t0032g0181 a0002c0004t0096g0212 a0002c0004t0101g0221	50	226	0.2212	-12	c.116 others(31): Show c.116-56059_116-56048delACACACACACAC	SEMA3E	ENSG00000170381.15	transcript	ENST00000643230.2	protein_coding	1/16		chr7	TogoVar
SEMA3E_chr7_83358238_83654139	83562464	TTTTATTT others(5): Show TTTTATTTATTTA	T T	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0015 a0001c0008t0015	a0001c0008t0015g0185 a0001c0008t0015g0185	1	226	0.0044	-12	c.116 others(31): Show c.116-72202_116-72191delTAAATAAATAAA	SEMA3E	ENSG00000170381.15	transcript	ENST00000643230.2	protein_coding	1/16		chr7	TogoVar
SEMA3E_chr7_83358238_83654139	83573248	CATTGTCA others(5): Show CATTGTCATTTTT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00733.hp1 HG00735.hp1 others(22): Show HG00438.hp2 HG00733.hp1 HG00735.hp1 HG01074.hp2 HG01081.hp1 HG01167.hp2 HG01243.hp2 HG01928.hp1 HG02083.hp1 HG02148.hp2 HG02698.hp1 HG02886.hp2 HG03490.hp1 HG03491.hp1 HG03942.hp1 HG04204.hp1 NA18522.hp2 NA18951.hp2 NA18961.hp1 NA18983.hp2 NA18995.hp1 NA19004.hp1 NA19060.hp1 NA19074.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0008 a0002c0004	a0001c0001t0001 a0001c0001t0004 a0001c0001t0009 others(13): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0009 a0001c0002t0001 a0001c0002t0008 a0001c0002t0014 a0001c0002t0072 a0001c0002t0080 a0001c0003t0001 a0001c0003t0002 a0001c0003t0020 a0001c0003t0079 a0001c0005t0021 a0001c0005t0062 a0001c0008t0015 a0002c0004t0003	a0001c0001t0001g0088 a0001c0001t0004g0182 a0001c0001t0009g0092 others(22): Show a0001c0001t0001g0088 a0001c0001t0004g0182 a0001c0001t0009g0092 a0001c0002t0001g0091 a0001c0002t0001g0093 a0001c0002t0008g0089 a0001c0002t0014g0087 a0001c0002t0072g0083 a0001c0002t0080g0094 a0001c0003t0001g0077 a0001c0003t0001g0079 a0001c0003t0001g0082 a0001c0003t0001g0084 a0001c0003t0001g0085 a0001c0003t0002g0078 a0001c0003t0002g0080 a0001c0003t0002g0086 a0001c0003t0002g0096 a0001c0003t0020g0075 a0001c0003t0020g0081 a0001c0003t0079g0076 a0001c0005t0021g0074 a0001c0005t0062g0063 a0001c0008t0015g0185 a0002c0004t0003g0090	25	226	0.1106	-12	c.115 others(31): Show c.115+75168_115+75179delAAAAATGACAAT	SEMA3E	ENSG00000170381.15	transcript	ENST00000643230.2	protein_coding	1/16		chr7	TogoVar
SEMA3E_chr7_83358238_83654139	83593280	CTCTCTGT others(5): Show CTCTCTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG03209.hp1 NA19240.hp1 HG03209.hp1 NA19240.hp1	a0001 a0001	a0001c0005 a0001c0006 a0001c0005 a0001c0006	a0001c0005t0013 a0001c0006t0055 a0001c0005t0013 a0001c0006t0055	a0001c0005t0013g0057 a0001c0006t0055g0056 a0001c0005t0013g0057 a0001c0006t0055g0056	2	226	0.0089	-12	c.115 others(31): Show c.115+55136_115+55147delCACACACAGAGA	SEMA3E	ENSG00000170381.15	transcript	ENST00000643230.2	protein_coding	1/16		chr7	TogoVar
SEMA3E_chr7_83358238_83654139	83593284	CTGTGTGT others(5): Show CTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01071.hp1 HG01515.hp1 others(9): Show HG01070.hp1 HG01071.hp1 HG01515.hp1 HG02145.hp2 HG02280.hp1 HG02572.hp1 HG02809.hp1 HG02886.hp1 HG02976.hp1 HG03225.hp1 HG03579.hp2 NA18906.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0008 others(3): Show a0001c0001 a0001c0002 a0001c0008 a0001c0010 a0001c0014 a0003c0009	a0001c0001t0008 a0001c0001t0030 a0001c0001t0056 others(8): Show a0001c0001t0008 a0001c0001t0030 a0001c0001t0056 a0001c0001t0070 a0001c0002t0001 a0001c0008t0054 a0001c0010t0058 a0001c0010t0059 a0001c0010t0060 a0001c0014t0009 a0003c0009t0061	a0001c0001t0008g0142 a0001c0001t0030g0141 a0001c0001t0030g0143 others(9): Show a0001c0001t0008g0142 a0001c0001t0030g0141 a0001c0001t0030g0143 a0001c0001t0056g0058 a0001c0001t0070g0073 a0001c0002t0001g0144 a0001c0008t0054g0051 a0001c0010t0058g0060 a0001c0010t0059g0059 a0001c0010t0060g0061 a0001c0014t0009g0164 a0003c0009t0061g0062	12	226	0.0531	-12	c.115 others(31): Show c.115+55132_115+55143delCACACACACACA	SEMA3E	ENSG00000170381.15	transcript	ENST00000643230.2	protein_coding	1/16		chr7	TogoVar
SEMA3F_chr3_50150324_50194075	50190609	CAAAAAAA others(5): Show CAAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02027.hp2 HG02027.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0023 a0001c0002t0023	a0001c0002t0023g0050 a0001c0002t0023g0050	1	344	0.0029	-12	c.24 others(23): Show c.2495_*2506delAAAAAAAAAAAA	SEMA3F	ENSG00000001617.12	transcript	ENST00000002829.8	protein_coding		1535	chr3	TogoVar

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