Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SGCD_chr5_156322164_156772788	156757263	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0041 a0001c0001t0006g0041	1	18	0.0556	-13	c.576 others(28): Show c.576-303_576-291delAAAAAAAAAAAAA	SGCD	ENSG00000170624.14	transcript	ENST00000337851.9	protein_coding	7/8		INFO_REALIGN_3_PRIME	chr5	TogoVar
SGCG_chr13_23175979_23330162	23188311	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp1 HG00408.hp2 others(65): Show HG00280.hp2 HG00323.hp1 HG00408.hp2 HG00544.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00642.hp1 HG01069.hp2 HG01071.hp1 HG01081.hp2 HG01099.hp2 HG01106.hp2 HG01123.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp2 HG01358.hp2 HG01515.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01981.hp2 HG02074.hp1 HG02109.hp2 HG02258.hp2 HG02300.hp2 HG02486.hp1 HG02523.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02965.hp2 HG02976.hp1 HG03041.hp2 HG03239.hp2 HG03516.hp1 HG04184.hp2 HG04228.hp2 NA18747.hp1 NA18747.hp2 NA18939.hp1 NA18943.hp1 NA18950.hp2 NA18952.hp2 NA18957.hp1 NA18957.hp2 NA18960.hp2 NA18963.hp1 NA18964.hp1 NA18971.hp2 NA18978.hp2 NA18982.hp1 NA18983.hp2 NA18987.hp2 NA18989.hp1 NA19030.hp1 NA19030.hp2 NA19056.hp2 NA19063.hp1 NA19074.hp1 NA19082.hp2 NA19240.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0002c0006 a0002c0008 a0002c0010 a0002c0012 a0003c0009 a0003c0011 a0004c0015 a0006c0016	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(21): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0014 a0001c0003t0003 a0001c0003t0004 a0001c0003t0006 a0001c0004t0002 a0001c0004t0003 a0001c0004t0004 a0001c0004t0008 a0002c0006t0003 a0002c0008t0003 a0002c0010t0003 a0002c0012t0003 a0003c0009t0001 a0003c0009t0002 a0003c0011t0001 a0003c0011t0006 a0004c0015t0003 a0006c0016t0003	a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0228 others(64): Show a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0228 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0240 a0001c0001t0001g0285 a0001c0001t0001g0310 a0001c0001t0002g0165 a0001c0001t0002g0227 a0001c0001t0002g0232 a0001c0001t0002g0296 a0001c0001t0005g0154 a0001c0002t0001g0058 a0001c0002t0001g0062 a0001c0002t0001g0175 a0001c0002t0001g0221 a0001c0002t0001g0233 a0001c0002t0001g0286 a0001c0002t0002g0001 a0001c0002t0002g0059 a0001c0002t0002g0061 a0001c0002t0002g0173 a0001c0002t0002g0174 a0001c0002t0002g0222 a0001c0002t0002g0223 a0001c0002t0002g0225 a0001c0002t0002g0229 a0001c0002t0002g0247 a0001c0002t0002g0248 a0001c0002t0003g0305 a0001c0002t0014g0230 a0001c0003t0003g0111 a0001c0003t0004g0226 a0001c0003t0004g0235 a0001c0003t0004g0242 a0001c0003t0004g0243 a0001c0003t0004g0245 a0001c0003t0004g0257 a0001c0003t0006g0005 a0001c0004t0002g0295 a0001c0004t0003g0244 a0001c0004t0003g0246 a0001c0004t0004g0231 a0001c0004t0008g0241 a0002c0006t0003g0224 a0002c0008t0003g0064 a0002c0008t0003g0307 a0002c0010t0003g0110 a0002c0010t0003g0249 a0002c0010t0003g0347 a0002c0012t0003g0348 a0002c0012t0003g0349 a0003c0009t0001g0238 a0003c0009t0001g0239 a0003c0009t0001g0309 a0003c0009t0002g0060 a0003c0009t0002g0163 a0003c0009t0002g0237 a0003c0009t0002g0290 a0003c0009t0002g0292 a0003c0009t0002g0293 a0003c0009t0002g0294 a0003c0011t0001g0065 a0003c0011t0006g0291 a0004c0015t0003g0289 a0006c0016t0003g0063	68	93	0.7312	-13	c.-1+ others(28): Show c.-1+7255_-1+7267delTTTTTTTTTTTTT	SGCG	ENSG00000102683.8	transcript	ENST00000218867.4	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
SGCG_chr13_23175979_23330162	23299435	TATATATA others(6): Show TATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00597.hp2 NA18939.hp1 NA18973.hp1 HG00597.hp2 NA18939.hp1 NA18973.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0009 a0001c0002t0001 a0001c0002t0002 a0001c0001t0009 a0001c0002t0001 a0001c0002t0002	a0001c0001t0009g0119 a0001c0002t0001g0175 a0001c0002t0002g0247 a0001c0001t0009g0119 a0001c0002t0001g0175 a0001c0002t0002g0247	3	344	0.0087	-13	c.578 others(30): Show c.578+3949_578+3961delATATATATATATA	SGCG	ENSG00000102683.8	transcript	ENST00000218867.4	protein_coding	6/7			chr13	TogoVar
SGCG_chr13_23175979_23330162	23299437	TATATATA others(6): Show TATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00544.hp2 NA18943.hp2 NA19004.hp2 HG00544.hp2 NA18943.hp2 NA19004.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0005 a0001c0001t0001 a0001c0001t0002 a0001c0002t0005	a0001c0001t0001g0170 a0001c0001t0002g0078 a0001c0002t0005g0135 a0001c0001t0001g0170 a0001c0001t0002g0078 a0001c0002t0005g0135	3	345	0.0087	-13	c.578 others(30): Show c.578+3951_578+3963delATATATATATATA	SGCG	ENSG00000102683.8	transcript	ENST00000218867.4	protein_coding	6/7			chr13	TogoVar
SGCG_chr13_23175979_23330162	23299439	TATATATA others(6): Show TATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02523.hp2 NA19005.hp2 HG02523.hp2 NA19005.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	a0001c0001t0002g0199 a0001c0001t0005g0117 a0001c0001t0002g0199 a0001c0001t0005g0117	2	346	0.0058	-13	c.578 others(30): Show c.578+3953_578+3965delATATATATATATA	SGCG	ENSG00000102683.8	transcript	ENST00000218867.4	protein_coding	6/7			chr13	TogoVar
SGCG_chr13_23175979_23330162	23299441	TATATATA others(6): Show TATATATATATATA	T T	intron_variant intron_variant	MODIFIER	NA19060.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0197 a0001c0001t0002g0197	1	349	0.0029	-13	c.578 others(30): Show c.578+3955_578+3967delATATATATATATA	SGCG	ENSG00000102683.8	transcript	ENST00000218867.4	protein_coding	6/7			chr13	TogoVar
SGCZ_chr8_14079845_15243431	14222792	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0085 a0001c0001t0085	a0001c0001t0085g0059 a0001c0001t0085g0059	1	3	0.3333	-13	c.424 others(32): Show c.424+14787_424+14799delAAAAAAAAAAAAA	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	4/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	14239899	CTCAAAAA others(6): Show CTCAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00642.hp1 HG00738.hp2 others(50): Show HG00438.hp2 HG00642.hp1 HG00738.hp2 HG01074.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp2 HG01346.hp2 HG01975.hp2 HG01978.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02055.hp2 HG02109.hp1 HG02109.hp2 HG02135.hp2 HG02451.hp2 HG02486.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02717.hp1 HG02809.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02976.hp1 HG03139.hp1 HG03195.hp1 HG03486.hp1 HG03540.hp2 HG03704.hp2 HG03942.hp1 HG03942.hp2 HG04204.hp2 NA18612.hp2 NA18906.hp1 NA18959.hp1 NA18959.hp2 NA19000.hp1 NA19030.hp1 NA19043.hp1 NA19056.hp2 NA19240.hp2 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(44): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0010 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0018 a0001c0001t0023 a0001c0001t0025 a0001c0001t0026 a0001c0001t0029 a0001c0001t0030 a0001c0001t0033 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0042 a0001c0001t0044 a0001c0001t0049 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0001t0055 a0001c0001t0056 a0001c0001t0060 a0001c0001t0065 a0001c0001t0066 a0001c0001t0067 a0001c0001t0068 a0001c0001t0071 a0001c0001t0072 a0001c0001t0074 a0001c0001t0075 a0001c0001t0077 a0001c0001t0079 a0001c0001t0087 a0001c0001t0088 a0001c0001t0089 a0001c0001t0091 a0002c0002t0004 a0002c0002t0007 a0002c0002t0009	a0001c0001t0001g0076 a0001c0001t0001g0080 a0001c0001t0002g0095 others(50): Show a0001c0001t0001g0076 a0001c0001t0001g0080 a0001c0001t0002g0095 a0001c0001t0003g0019 a0001c0001t0003g0020 a0001c0001t0005g0072 a0001c0001t0005g0090 a0001c0001t0006g0083 a0001c0001t0008g0060 a0001c0001t0008g0061 a0001c0001t0010g0002 a0001c0001t0015g0005 a0001c0001t0016g0022 a0001c0001t0017g0011 a0001c0001t0018g0037 a0001c0001t0023g0029 a0001c0001t0025g0021 a0001c0001t0026g0035 a0001c0001t0029g0018 a0001c0001t0030g0034 a0001c0001t0033g0003 a0001c0001t0036g0012 a0001c0001t0037g0032 a0001c0001t0038g0023 a0001c0001t0039g0036 a0001c0001t0042g0040 a0001c0001t0044g0033 a0001c0001t0049g0046 a0001c0001t0050g0045 a0001c0001t0051g0074 a0001c0001t0052g0077 a0001c0001t0055g0100 a0001c0001t0056g0062 a0001c0001t0060g0071 a0001c0001t0065g0047 a0001c0001t0066g0099 a0001c0001t0067g0068 a0001c0001t0068g0064 a0001c0001t0071g0067 a0001c0001t0072g0066 a0001c0001t0074g0098 a0001c0001t0075g0044 a0001c0001t0077g0065 a0001c0001t0079g0052 a0001c0001t0087g0088 a0001c0001t0088g0054 a0001c0001t0089g0050 a0001c0001t0091g0102 a0002c0002t0004g0027 a0002c0002t0004g0038 a0002c0002t0007g0048 a0002c0002t0007g0070 a0002c0002t0009g0001	53	84	0.6310	-13	c.337 others(30): Show c.337-2233_337-2221delTTTTTTTTTTTGA	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	3/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	14239901	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG02135.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0081 a0001c0001t0081	a0001c0001t0081g0085 a0001c0001t0081g0085	1	72	0.0139	-13	c.337 others(30): Show c.337-2235_337-2223delTTTTTTTTTTTTT	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	3/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	14436998	GAAATAGA others(6): Show GAAATAGATTCATC	G G	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0083 a0001c0001t0083	a0001c0001t0083g0057 a0001c0001t0083g0057	1	102	0.0098	-13	c.235 others(34): Show c.235-112807_235-112795delGATGAATCTATTT	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	2/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	14479727	ACTTCTTT others(6): Show ACTTCTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02886.hp2 HG03195.hp2 others(1): Show HG01243.hp1 HG02886.hp2 HG03195.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0046 a0001c0001t0050 others(1): Show a0001c0001t0020 a0001c0001t0046 a0001c0001t0050 a0001c0001t0064	a0001c0001t0020g0025 a0001c0001t0046g0017 a0001c0001t0050g0045 others(1): Show a0001c0001t0020g0025 a0001c0001t0046g0017 a0001c0001t0050g0045 a0001c0001t0064g0069	4	60	0.0667	-13	c.234 others(32): Show c.234+74992_234+75004delAAAAAAAAAGAAG	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	2/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	14510757	AACTTGCA others(6): Show AACTTGCAGTTGTG	A A	intron_variant intron_variant	MODIFIER	HG03942.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0011 a0001c0001t0017g0011	1	102	0.0098	-13	c.234 others(32): Show c.234+43962_234+43974delCACAACTGCAAGT	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	2/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	14525160	ATAGATAG others(6): Show ATAGATAGATAGAT	A A	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02055.hp1 HG02109.hp1 others(16): Show HG01192.hp1 HG02055.hp1 HG02109.hp1 HG02486.hp2 HG02622.hp1 HG02630.hp2 HG02717.hp1 HG02809.hp2 HG02886.hp1 HG02976.hp1 HG03139.hp1 HG03209.hp1 HG03209.hp2 HG04204.hp1 HG06807.hp2 NA18906.hp1 NA19030.hp1 NA19240.hp1 NA20129.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 others(15): Show a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0021 a0001c0001t0027 a0001c0001t0029 a0001c0001t0033 a0001c0001t0037 a0001c0001t0052 a0001c0001t0061 a0001c0001t0062 a0001c0001t0065 a0001c0001t0083 a0001c0001t0088 a0001c0001t0091 a0002c0002t0004 a0002c0002t0007 a0003c0003t0043	a0001c0001t0013g0026 a0001c0001t0014g0024 a0001c0001t0015g0005 others(16): Show a0001c0001t0013g0026 a0001c0001t0014g0024 a0001c0001t0015g0005 a0001c0001t0021g0015 a0001c0001t0027g0010 a0001c0001t0029g0018 a0001c0001t0033g0003 a0001c0001t0037g0032 a0001c0001t0052g0077 a0001c0001t0061g0049 a0001c0001t0062g0082 a0001c0001t0065g0047 a0001c0001t0083g0057 a0001c0001t0088g0054 a0001c0001t0091g0102 a0002c0002t0004g0027 a0002c0002t0004g0038 a0002c0002t0007g0048 a0003c0003t0043g0041	19	98	0.1939	-13	c.234 others(32): Show c.234+29559_234+29571delATCTATCTATCTA	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	2/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	14699471	ATAGATCA others(6): Show ATAGATCAAAAATC	A A	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19043.hp1 NA19030.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0060 a0001c0001t0029 a0001c0001t0060	a0001c0001t0029g0018 a0001c0001t0060g0071 a0001c0001t0029g0018 a0001c0001t0060g0071	2	102	0.0196	-13	c.40- others(32): Show c.40-144558_40-144546delGATTTTTGATCTA	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	1/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	14702838	TAGATAGA others(6): Show TAGATAGATAGATA	T T	intron_variant intron_variant	MODIFIER	NA18951.hp1 NA19056.hp2 NA18951.hp1 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0066 a0001c0001t0001 a0001c0001t0066	a0001c0001t0001g0075 a0001c0001t0066g0099 a0001c0001t0001g0075 a0001c0001t0066g0099	2	99	0.0202	-13	c.40- others(32): Show c.40-147925_40-147913delTATCTATCTATCT	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	1/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	14978470	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01109.hp2 HG01243.hp1 others(9): Show HG00738.hp2 HG01109.hp2 HG01243.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02630.hp2 HG02976.hp2 HG04204.hp1 NA18951.hp1 NA20129.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0028 a0001c0001t0030 others(9): Show a0001c0001t0001 a0001c0001t0028 a0001c0001t0030 a0001c0001t0031 a0001c0001t0033 a0001c0001t0036 a0001c0001t0046 a0001c0001t0048 a0001c0001t0055 a0001c0001t0061 a0001c0001t0062 a0001c0001t0078	a0001c0001t0001g0075 a0001c0001t0028g0006 a0001c0001t0030g0034 others(9): Show a0001c0001t0001g0075 a0001c0001t0028g0006 a0001c0001t0030g0034 a0001c0001t0031g0013 a0001c0001t0033g0003 a0001c0001t0036g0012 a0001c0001t0046g0017 a0001c0001t0048g0051 a0001c0001t0055g0100 a0001c0001t0061g0049 a0001c0001t0062g0082 a0001c0001t0078g0093	12	23	0.5217	-13	c.39+ others(32): Show c.39+259102_39+259114delTTTTTTTTTTTTT	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	1/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	15078147	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02004.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0056 a0001c0001t0056	a0001c0001t0056g0062 a0001c0001t0056g0062	1	53	0.0189	-13	c.39+ others(32): Show c.39+159425_39+159437delAAAAAAAAAAAAA	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	1/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	15102536	GTATCCAT others(6): Show GTATCCATATTGGT	G G	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02717.hp1 NA18906.hp2 HG01109.hp1 HG02717.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0040 a0001c0001t0052 a0001c0001t0086 a0001c0001t0040 a0001c0001t0052 a0001c0001t0086	a0001c0001t0040g0039 a0001c0001t0052g0077 a0001c0001t0086g0078 a0001c0001t0040g0039 a0001c0001t0052g0077 a0001c0001t0086g0078	3	102	0.0294	-13	c.39+ others(32): Show c.39+135036_39+135048delACCAATATGGATA	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	1/7			chr8	TogoVar
SGCZ_chr8_14079845_15243431	15186262	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02135.hp1 NA19240.hp1 HG02135.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0081 a0001c0001t0021 a0001c0001t0081	a0001c0001t0021g0015 a0001c0001t0081g0085 a0001c0001t0021g0015 a0001c0001t0081g0085	2	13	0.1538	-13	c.39+ others(30): Show c.39+51310_39+51322delTTTTTTTTTTTTT	SGCZ	ENSG00000185053.14	transcript	ENST00000382080.6	protein_coding	1/7			chr8	TogoVar
SGF29_chr16_28548920_28596790	28594770	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0287 a0001c0001t0002g0287	1	146	0.0068	-13	c.30 others(24): Show c.3065_*3077delTTTTTTTTTTTTT	SGF29	ENSG00000176476.9	transcript	ENST00000317058.8	protein_coding		2981		chr16	TogoVar
SGIP1_chr1_66529153_66756139	66592860	CTTCCTTC others(6): Show CTTCCTTCCTTTCT	C C	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02145.hp1 HG02451.hp1 others(12): Show HG02055.hp2 HG02145.hp1 HG02451.hp1 HG02615.hp2 HG02622.hp1 HG02723.hp1 HG02818.hp2 HG03130.hp1 HG03195.hp1 HG03225.hp1 HG03453.hp2 HG03579.hp1 HG06807.hp2 NA18906.hp2 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0003 a0001c0001 a0002c0002 a0002c0003	a0001c0001t0006 a0001c0001t0008 a0001c0001t0016 others(5): Show a0001c0001t0006 a0001c0001t0008 a0001c0001t0016 a0002c0002t0001 a0002c0002t0004 a0002c0002t0007 a0002c0002t0016 a0002c0003t0048	a0001c0001t0006g0251 a0001c0001t0008g0157 a0001c0001t0008g0158 others(12): Show a0001c0001t0006g0251 a0001c0001t0008g0157 a0001c0001t0008g0158 a0001c0001t0008g0159 a0001c0001t0008g0160 a0001c0001t0008g0161 a0001c0001t0008g0162 a0001c0001t0016g0184 a0002c0002t0001g0252 a0002c0002t0004g0200 a0002c0002t0007g0250 a0002c0002t0007g0253 a0002c0002t0007g0256 a0002c0002t0016g0254 a0002c0003t0048g0214	15	300	0.0500	-13	c.11- others(30): Show c.11-32979_11-32967delCTTTCTTTCCTTC	SGIP1	ENSG00000118473.23	transcript	ENST00000371037.9	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr1	TogoVar
SGIP1_chr1_66529153_66756139	66624844	CTATGGAA others(6): Show CTATGGAACATGTG	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00408.hp2 others(88): Show HG00099.hp2 HG00140.hp2 HG00408.hp2 HG00438.hp1 HG00597.hp2 HG00621.hp2 HG00642.hp1 HG00733.hp1 HG01070.hp2 HG01071.hp2 HG01167.hp2 HG01192.hp2 HG01243.hp1 HG01255.hp1 HG01261.hp2 HG01358.hp1 HG01496.hp2 HG01515.hp1 HG01884.hp1 HG02015.hp1 HG02056.hp1 HG02083.hp2 HG02132.hp2 HG02145.hp2 HG02148.hp2 HG02257.hp1 HG02258.hp1 HG02300.hp2 HG02602.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp2 HG02717.hp2 HG02723.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02896.hp1 HG02922.hp1 HG02965.hp1 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp2 HG03669.hp1 HG03688.hp2 HG03927.hp1 HG04115.hp2 HG04199.hp2 HG04204.hp2 HG04228.hp2 NA18944.hp2 NA18953.hp1 NA18956.hp1 NA18957.hp2 NA18959.hp2 NA18961.hp2 NA18974.hp1 NA18974.hp2 NA18978.hp1 NA18983.hp1 NA18991.hp2 NA18994.hp2 NA19002.hp1 NA19005.hp1 NA19010.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp2 NA19065.hp1 NA19079.hp2 NA19085.hp1 NA19088.hp2 NA19091.hp2 NA20129.hp2 NA20300.hp1 NA21309.hp2	a0002 a0005 a0008 a0002 a0005 a0008	a0002c0002 a0002c0003 a0002c0006 others(2): Show a0002c0002 a0002c0003 a0002c0006 a0005c0010 a0008c0017	a0002c0002t0001 a0002c0002t0002 a0002c0002t0003 others(23): Show a0002c0002t0001 a0002c0002t0002 a0002c0002t0003 a0002c0002t0004 a0002c0002t0007 a0002c0002t0016 a0002c0002t0018 a0002c0002t0029 a0002c0002t0030 a0002c0002t0035 a0002c0002t0039 a0002c0002t0040 a0002c0002t0047 a0002c0003t0001 a0002c0003t0003 a0002c0003t0004 a0002c0003t0005 a0002c0003t0025 a0002c0003t0026 a0002c0003t0041 a0002c0003t0042 a0002c0003t0043 a0002c0003t0048 a0002c0006t0002 a0005c0010t0003 a0008c0017t0002	a0002c0002t0001g0117 a0002c0002t0001g0128 a0002c0002t0001g0252 others(88): Show a0002c0002t0001g0117 a0002c0002t0001g0128 a0002c0002t0001g0252 a0002c0002t0001g0275 a0002c0002t0001g0289 a0002c0002t0002g0139 a0002c0002t0003g0012 a0002c0002t0003g0013 a0002c0002t0003g0014 a0002c0002t0003g0016 a0002c0002t0003g0017 a0002c0002t0003g0018 a0002c0002t0003g0136 a0002c0002t0003g0166 a0002c0002t0003g0198 a0002c0002t0003g0239 a0002c0002t0003g0240 a0002c0002t0003g0241 a0002c0002t0003g0244 a0002c0002t0003g0245 a0002c0002t0003g0246 a0002c0002t0003g0247 a0002c0002t0003g0248 a0002c0002t0003g0259 a0002c0002t0003g0260 a0002c0002t0003g0265 a0002c0002t0003g0266 a0002c0002t0003g0268 a0002c0002t0003g0272 a0002c0002t0003g0273 a0002c0002t0003g0274 a0002c0002t0003g0276 a0002c0002t0003g0277 a0002c0002t0003g0279 a0002c0002t0003g0281 a0002c0002t0003g0284 a0002c0002t0003g0285 a0002c0002t0003g0287 a0002c0002t0003g0288 a0002c0002t0003g0290 a0002c0002t0003g0292 a0002c0002t0003g0293 a0002c0002t0003g0294 a0002c0002t0003g0296 a0002c0002t0003g0299 a0002c0002t0003g0300 a0002c0002t0003g0301 a0002c0002t0004g0109 a0002c0002t0004g0121 a0002c0002t0004g0122 a0002c0002t0004g0124 a0002c0002t0004g0125 a0002c0002t0004g0126 a0002c0002t0004g0199 a0002c0002t0004g0200 a0002c0002t0007g0249 a0002c0002t0007g0250 a0002c0002t0007g0253 a0002c0002t0007g0256 a0002c0002t0016g0254 a0002c0002t0018g0123 a0002c0002t0029g0112 a0002c0002t0030g0269 a0002c0002t0035g0127 a0002c0002t0039g0280 a0002c0002t0040g0295 a0002c0002t0047g0286 a0002c0003t0001g0134 a0002c0003t0003g0145 a0002c0003t0003g0150 a0002c0003t0003g0151 a0002c0003t0004g0154 a0002c0003t0004g0155 a0002c0003t0004g0204 a0002c0003t0005g0130 a0002c0003t0005g0131 a0002c0003t0005g0137 a0002c0003t0025g0262 a0002c0003t0026g0156 a0002c0003t0041g0113 a0002c0003t0042g0146 a0002c0003t0043g0190 a0002c0003t0048g0214 a0002c0006t0002g0208 a0002c0006t0002g0209 a0002c0006t0002g0210 a0002c0006t0002g0211 a0002c0006t0002g0212 a0005c0010t0003g0242 a0005c0010t0003g0243 a0008c0017t0002g0011	91	300	0.3033	-13	c.11- others(27): Show c.11-1002_11-990delTATGGAACATGTG	SGIP1	ENSG00000118473.23	transcript	ENST00000371037.9	protein_coding	1/24			chr1	TogoVar
SGIP1_chr1_66529153_66756139	66630871	GAAAGAAA others(6): Show GAAAGAAAGAAAGA	G G	intron_variant intron_variant	MODIFIER	HG02148.hp1 HG02148.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0144 a0001c0001t0002g0144	1	300	0.0033	-13	c.75- others(28): Show c.75-2196_75-2184delAGAAAGAAAGAAA	SGIP1	ENSG00000118473.23	transcript	ENST00000371037.9	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr1	TogoVar
SGIP1_chr1_66529153_66756139	66631087	GAAAGAAA others(6): Show GAAAGAAAGAAAGA	G G	intron_variant intron_variant	MODIFIER	HG00408.hp2 NA18956.hp1 NA18974.hp2 HG00408.hp2 NA18956.hp1 NA18974.hp2	a0002 a0008 a0002 a0008	a0002c0002 a0008c0017 a0002c0002 a0008c0017	a0002c0002t0001 a0002c0002t0003 a0008c0017t0002 a0002c0002t0001 a0002c0002t0003 a0008c0017t0002	a0002c0002t0001g0289 a0002c0002t0003g0284 a0008c0017t0002g0011 a0002c0002t0001g0289 a0002c0002t0003g0284 a0008c0017t0002g0011	3	300	0.0100	-13	c.75- others(28): Show c.75-1979_75-1967delGAAAGAAAGAAAA	SGIP1	ENSG00000118473.23	transcript	ENST00000371037.9	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr1	TogoVar
SGIP1_chr1_66529153_66756139	66660120	GAAAGAAA others(6): Show GAAAGAAAGAAAGA	G G	intron_variant intron_variant	MODIFIER	NA19083.hp2 NA19083.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0051 a0001c0004t0051	a0001c0004t0051g0009 a0001c0004t0051g0009	1	300	0.0033	-13	c.460 others(28): Show c.460-390_460-378delAGAAAGAAAGAAA	SGIP1	ENSG00000118473.23	transcript	ENST00000371037.9	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr1	TogoVar
SGK1_chr6_134164256_134323112	134206366	TATATATA others(6): Show TATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG02135.hp2 NA18940.hp1 others(1): Show HG02135.hp1 HG02135.hp2 NA18940.hp1 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0026 a0001c0002t0001g0039 a0001c0002t0001g0048 others(1): Show a0001c0001t0001g0026 a0001c0002t0001g0039 a0001c0002t0001g0048 a0001c0002t0001g0197	4	241	0.0166	-13	c.361 others(28): Show c.361+977_361+989delTATATATATATAT	SGK1	ENSG00000118515.12	transcript	ENST00000367858.10	protein_coding	3/13			chr6	TogoVar
SGK1_chr6_134164256_134323112	134228841	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00642.hp2 HG00735.hp2 others(33): Show HG00099.hp2 HG00642.hp2 HG00735.hp2 HG00741.hp1 HG01069.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp2 HG01243.hp2 HG01891.hp2 HG02109.hp1 HG02258.hp2 HG02451.hp1 HG02523.hp1 HG02523.hp2 HG02615.hp1 HG02622.hp1 HG02630.hp1 HG02895.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03516.hp2 HG03831.hp1 HG04199.hp1 HG06807.hp2 NA18522.hp1 NA18957.hp1 NA19030.hp1 NA19070.hp2 NA19240.hp2 NA21309.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0001c0007 a0003c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0002t0001 a0001c0002t0007 a0001c0003t0001 a0001c0006t0004 a0001c0007t0001 a0003c0011t0001	a0001c0001t0001g0030 a0001c0001t0001g0041 a0001c0001t0001g0080 others(33): Show a0001c0001t0001g0030 a0001c0001t0001g0041 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0090 a0001c0001t0001g0094 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0118 a0001c0001t0001g0140 a0001c0001t0001g0142 a0001c0001t0001g0158 a0001c0001t0001g0163 a0001c0001t0001g0168 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0002g0062 a0001c0001t0002g0114 a0001c0001t0002g0119 a0001c0001t0004g0097 a0001c0001t0006g0247 a0001c0001t0006g0248 a0001c0001t0008g0170 a0001c0002t0001g0108 a0001c0002t0001g0155 a0001c0002t0001g0218 a0001c0002t0007g0014 a0001c0003t0001g0047 a0001c0006t0004g0224 a0001c0006t0004g0225 a0001c0007t0001g0153 a0003c0011t0001g0209	36	165	0.2182	-13	c.286 others(32): Show c.286-21423_286-21411delAAAAAAAAAAAAA	SGK1	ENSG00000118515.12	transcript	ENST00000367858.10	protein_coding	2/13			chr6	TogoVar
SGK1_chr6_134164256_134323112	134235540	TTTTTATT others(6): Show TTTTTATTTATTTA	T T	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG03041.hp1 NA19005.hp2 others(1): Show HG02809.hp1 HG03041.hp1 NA19005.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0167 a0001c0001t0001g0195 a0001c0001t0001g0227 others(1): Show a0001c0001t0001g0167 a0001c0001t0001g0195 a0001c0001t0001g0227 a0001c0002t0002g0241	4	203	0.0197	-13	c.285 others(32): Show c.285+26380_285+26392delTAAATAAATAAAA	SGK1	ENSG00000118515.12	transcript	ENST00000367858.10	protein_coding	2/13			chr6	TogoVar
SGK1_chr6_134164256_134323112	134265574	TATACATA others(6): Show TATACATATACATA	T T	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02896.hp2 HG02970.hp2 others(1): Show HG02895.hp1 HG02896.hp2 HG02970.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0163 a0001c0001t0001g0245 a0001c0001t0001g0246 others(1): Show a0001c0001t0001g0163 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0002t0002g0241	4	248	0.0161	-13	c.70- others(28): Show c.70-3439_70-3427delTATGTATATGTAT	SGK1	ENSG00000118515.12	transcript	ENST00000367858.10	protein_coding	1/13			chr6	TogoVar
SGK1_chr6_134164256_134323112	134283873	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA19085.hp1 NA19085.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0185 a0001c0002t0001g0185	1	49	0.0204	-13	c.70- others(30): Show c.70-21738_70-21726delTTTTTTTTTTTTT	SGK1	ENSG00000118515.12	transcript	ENST00000367858.10	protein_coding	1/13			chr6	TogoVar
SGK2_chr20_43554027_43590627	43579011	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18957.hp1 NA18957.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0129 a0001c0001t0001g0129	1	46	0.0217	-13	c.850 others(28): Show c.850-949_850-937delTTTTTTTTTTTTT	SGK2	ENSG00000101049.18	transcript	ENST00000373100.7	protein_coding	11/12		INFO_REALIGN_3_PRIME	chr20	TogoVar
SGK3_chr8_66707781_66867022	66723112	TATATATA others(6): Show TATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02818.hp2 HG02922.hp1 others(1): Show HG02559.hp1 HG02818.hp2 HG02922.hp1 NA18522.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0012 a0001c0002t0003g0017 a0001c0002t0003g0018 others(1): Show a0001c0002t0003g0012 a0001c0002t0003g0017 a0001c0002t0003g0018 a0001c0002t0003g0020	4	138	0.0290	-13	c.-12 others(34): Show c.-122+10280_-122+10292delATATATATATATA	SGK3	ENSG00000104205.16	transcript	ENST00000521198.7	protein_coding	1/16			chr8	TogoVar
SGK3_chr8_66707781_66867022	66723114	TATATATA others(6): Show TATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0036 a0001c0002t0002g0036	1	138	0.0072	-13	c.-12 others(34): Show c.-122+10282_-122+10294delATATATATATATA	SGK3	ENSG00000104205.16	transcript	ENST00000521198.7	protein_coding	1/16			chr8	TogoVar
SGK3_chr8_66707781_66867022	66723118	TATATATA others(6): Show TATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG03669.hp2 HG03688.hp1 others(1): Show HG03017.hp2 HG03669.hp2 HG03688.hp1 NA18994.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0025 a0001c0002t0002g0054 a0001c0002t0002g0055 others(1): Show a0001c0002t0002g0025 a0001c0002t0002g0054 a0001c0002t0002g0055 a0001c0002t0002g0056	4	136	0.0294	-13	c.-12 others(34): Show c.-122+10286_-122+10298delATATATATATATA	SGK3	ENSG00000104205.16	transcript	ENST00000521198.7	protein_coding	1/16			chr8	TogoVar
SGK3_chr8_66707781_66867022	66723119	ATATATAT others(6): Show ATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG04199.hp1 NA20905.hp2 HG02738.hp1 HG04199.hp1 NA20905.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0041 a0001c0002t0002g0044 a0001c0002t0002g0045 a0001c0002t0002g0041 a0001c0002t0002g0044 a0001c0002t0002g0045	3	138	0.0217	-13	c.-12 others(34): Show c.-122+10288_-122+10300delATATATATATATT	SGK3	ENSG00000104205.16	transcript	ENST00000521198.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr8	TogoVar
SGK3_chr8_66707781_66867022	66723121	ATATATAT others(6): Show ATATATATATATTT	A A	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0066 a0001c0001t0001g0066	1	136	0.0074	-13	c.-12 others(34): Show c.-122+10290_-122+10302delATATATATATTTT	SGK3	ENSG00000104205.16	transcript	ENST00000521198.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr8	TogoVar
SGK3_chr8_66707781_66867022	66723123	ATATATAT others(6): Show ATATATATATTTTT	A A	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02056.hp2 HG02293.hp1 HG02055.hp1 HG02056.hp2 HG02293.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0011 a0001c0002t0002 a0001c0002t0011	a0001c0002t0002g0030 a0001c0002t0002g0139 a0001c0002t0011g0031 a0001c0002t0002g0030 a0001c0002t0002g0139 a0001c0002t0011g0031	3	135	0.0222	-13	c.-12 others(34): Show c.-122+10292_-122+10304delATATATATTTTTT	SGK3	ENSG00000104205.16	transcript	ENST00000521198.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr8	TogoVar
SGK3_chr8_66707781_66867022	66723125	ATATATAT others(6): Show ATATATATTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03017.hp1 HG03942.hp2 HG03017.hp1 HG03942.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0008 a0001c0002t0002 a0001c0002t0008	a0001c0002t0002g0140 a0001c0002t0008g0121 a0001c0002t0002g0140 a0001c0002t0008g0121	2	135	0.0148	-13	c.-12 others(34): Show c.-122+10294_-122+10306delATATATTTTTTTT	SGK3	ENSG00000104205.16	transcript	ENST00000521198.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr8	TogoVar
SGMS1_chr10_50300600_50628956	50370632	TCAGGAGT others(6): Show TCAGGAGTCTGAGG	T T	intron_variant intron_variant	MODIFIER	NA19056.hp2 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0242 a0001c0001t0005g0242	1	310	0.0032	-13	c.-23 others(34): Show c.-231-26300_-231-26288delCCTCAGACTCCTG	SGMS1	ENSG00000198964.14	transcript	ENST00000361781.7	protein_coding	6/10			chr10	TogoVar
SGMS1_chr10_50300600_50628956	50458339	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02523.hp2 HG03927.hp2 NA18906.hp1 others(1): Show HG02523.hp2 HG03927.hp2 NA18906.hp1 NA19056.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0166 a0001c0002t0001g0008 a0001c0002t0001g0108 others(1): Show a0001c0001t0001g0166 a0001c0002t0001g0008 a0001c0002t0001g0108 a0001c0002t0001g0155	4	47	0.0851	-13	c.-31 others(32): Show c.-313+2321_-313+2333delAAAAAAAAAAAAA	SGMS1	ENSG00000198964.14	transcript	ENST00000361781.7	protein_coding	5/10			chr10	TogoVar
SGMS1_chr10_50300600_50628956	50527063	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00408.hp2 others(37): Show HG00099.hp1 HG00140.hp1 HG00408.hp2 HG00423.hp2 HG00642.hp2 HG00735.hp2 HG00741.hp1 HG01109.hp2 HG01168.hp2 HG01257.hp1 HG01257.hp2 HG01361.hp2 HG02109.hp2 HG02135.hp2 HG02155.hp2 HG02300.hp1 HG02602.hp2 HG03710.hp2 HG04115.hp1 NA18945.hp2 NA18948.hp2 NA18961.hp1 NA18965.hp1 NA18969.hp1 NA18970.hp2 NA18977.hp2 NA18981.hp1 NA18992.hp1 NA18995.hp2 NA19004.hp1 NA19012.hp1 NA19056.hp2 NA19058.hp1 NA19062.hp1 NA19070.hp2 NA19074.hp1 NA19077.hp2 NA19079.hp2 NA19084.hp1 NA19089.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0002t0003 a0001c0002t0005	a0001c0001t0001g0158 a0001c0001t0002g0130 a0001c0001t0002g0251 others(37): Show a0001c0001t0001g0158 a0001c0001t0002g0130 a0001c0001t0002g0251 a0001c0001t0002g0252 a0001c0001t0002g0296 a0001c0001t0002g0297 a0001c0001t0002g0311 a0001c0001t0003g0067 a0001c0001t0003g0205 a0001c0001t0003g0206 a0001c0001t0003g0208 a0001c0001t0003g0209 a0001c0001t0003g0214 a0001c0001t0003g0215 a0001c0001t0003g0216 a0001c0001t0003g0217 a0001c0001t0003g0224 a0001c0001t0003g0225 a0001c0001t0003g0226 a0001c0001t0003g0228 a0001c0001t0003g0229 a0001c0001t0003g0235 a0001c0001t0003g0236 a0001c0001t0003g0237 a0001c0001t0003g0238 a0001c0001t0003g0240 a0001c0001t0003g0246 a0001c0001t0005g0203 a0001c0001t0005g0207 a0001c0001t0005g0210 a0001c0001t0005g0219 a0001c0001t0005g0222 a0001c0001t0005g0223 a0001c0001t0005g0242 a0001c0001t0005g0243 a0001c0002t0003g0218 a0001c0002t0003g0220 a0001c0002t0003g0233 a0001c0002t0003g0234 a0001c0002t0005g0232	40	130	0.3077	-13	c.-58 others(32): Show c.-588-7155_-588-7143delTTTTTTTTTTTTT	SGMS1	ENSG00000198964.14	transcript	ENST00000361781.7	protein_coding	2/10			chr10	TogoVar
SGPP1_chr14_63679216_63733065	63679924	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18972.hp2 NA18972.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0037 a0001c0002t0005g0037	1	119	0.0084	-13	c.61 others(24): Show c.6168_*6180delAAAAAAAAAAAAA	SGPP1	ENSG00000126821.8	transcript	ENST00000247225.7	protein_coding		4291		chr14	TogoVar
SGPP1_chr14_63679216_63733065	63688712	TTCTTTTT others(6): Show TTCTTTTTTTTTTC	T T	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02970.hp2 HG03098.hp1 HG02280.hp2 HG02970.hp2 HG03098.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0010 a0001c0002t0010	a0001c0002t0010g0038 a0001c0002t0010g0039 a0001c0002t0010g0040 a0001c0002t0010g0038 a0001c0002t0010g0039 a0001c0002t0010g0040	3	286	0.0105	-13	c.775 others(30): Show c.775-2069_775-2057delGAAAAAAAAAAGA	SGPP1	ENSG00000126821.8	transcript	ENST00000247225.7	protein_coding	2/2			chr14	TogoVar
SGPP1_chr14_63679216_63733065	63719001	TATATATA others(6): Show TATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0070 a0001c0001t0003g0070	1	286	0.0035	-13	c.684 others(30): Show c.684+8247_684+8259delTATATATATATAT	SGPP1	ENSG00000126821.8	transcript	ENST00000247225.7	protein_coding	1/2			chr14	TogoVar
SGPP1_chr14_63679216_63733065	63719002	ATATATAT others(6): Show ATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0050 a0001c0003t0002g0050	1	283	0.0035	-13	c.684 others(30): Show c.684+8246_684+8258delATATATATATATA	SGPP1	ENSG00000126821.8	transcript	ENST00000247225.7	protein_coding	1/2			chr14	TogoVar
SGPP2_chr2_222419543_222567621	222467950	GAAAAAAA others(6): Show GAAAAAAAAAAAAA	G G	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02809.hp1 HG02922.hp2 others(8): Show HG02486.hp2 HG02809.hp1 HG02922.hp2 HG03195.hp2 HG03225.hp2 NA18906.hp2 NA18974.hp1 NA18975.hp2 NA19030.hp1 NA19030.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0002 a0001c0001t0012 a0001c0001t0014 others(4): Show a0001c0001t0002 a0001c0001t0012 a0001c0001t0014 a0001c0001t0023 a0001c0001t0062 a0001c0002t0006 a0001c0005t0043	a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0012g0175 others(8): Show a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0012g0175 a0001c0001t0012g0239 a0001c0001t0014g0208 a0001c0001t0023g0258 a0001c0001t0062g0207 a0001c0002t0006g0260 a0001c0002t0006g0261 a0001c0002t0006g0263 a0001c0005t0043g0156	11	57	0.1930	-13	c.220 others(30): Show c.220-6592_220-6580delAAAAAAAAAAAAA	SGPP2	ENSG00000163082.10	transcript	ENST00000321276.8	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr2	TogoVar
SGPP2_chr2_222419543_222567621	222486731	GAGGTGTA others(6): Show GAGGTGTAGAGCCT	G G	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00597.hp2 HG00639.hp1 others(43): Show HG00323.hp1 HG00597.hp2 HG00639.hp1 HG01069.hp1 HG01070.hp2 HG01081.hp1 HG01123.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01934.hp1 HG01975.hp1 HG02055.hp1 HG02074.hp1 HG02074.hp2 HG02132.hp1 HG02280.hp1 HG02809.hp2 HG03490.hp2 HG03492.hp1 HG03834.hp1 HG04199.hp1 HG06807.hp2 NA18946.hp1 NA18946.hp2 NA18960.hp1 NA18968.hp2 NA18971.hp1 NA18974.hp2 NA18980.hp2 NA18982.hp1 NA18984.hp2 NA18988.hp2 NA19002.hp2 NA19003.hp2 NA19030.hp2 NA19056.hp1 NA19060.hp1 NA19060.hp2 NA19066.hp2 NA19068.hp2 NA19087.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 others(4): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0009 a0001c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(14): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0011 a0001c0001t0032 a0001c0001t0034 a0001c0001t0053 a0001c0003t0039 a0001c0004t0018 a0001c0005t0043 a0001c0006t0003 a0001c0009t0002 a0001c0014t0003	a0001c0001t0001g0020 a0001c0001t0001g0083 a0001c0001t0001g0110 others(43): Show a0001c0001t0001g0020 a0001c0001t0001g0083 a0001c0001t0001g0110 a0001c0001t0001g0117 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0151 a0001c0001t0001g0173 a0001c0001t0001g0179 a0001c0001t0001g0182 a0001c0001t0001g0203 a0001c0001t0002g0028 a0001c0001t0002g0079 a0001c0001t0002g0143 a0001c0001t0002g0181 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0003g0054 a0001c0001t0003g0089 a0001c0001t0003g0090 a0001c0001t0003g0092 a0001c0001t0003g0098 a0001c0001t0003g0169 a0001c0001t0003g0180 a0001c0001t0003g0210 a0001c0001t0003g0221 a0001c0001t0004g0040 a0001c0001t0004g0052 a0001c0001t0004g0199 a0001c0001t0004g0267 a0001c0001t0005g0021 a0001c0001t0005g0126 a0001c0001t0007g0238 a0001c0001t0007g0252 a0001c0001t0008g0024 a0001c0001t0008g0102 a0001c0001t0011g0139 a0001c0001t0032g0005 a0001c0001t0034g0084 a0001c0001t0053g0174 a0001c0003t0039g0205 a0001c0004t0018g0183 a0001c0005t0043g0156 a0001c0006t0003g0051 a0001c0009t0002g0067 a0001c0014t0003g0188	46	270	0.1704	-13	c.378 others(32): Show c.378+12008_378+12020delGTGTAGAGCCTAG	SGPP2	ENSG00000163082.10	transcript	ENST00000321276.8	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr2	TogoVar
SGPP2_chr2_222419543_222567621	222498088	CTTCTCAG others(6): Show CTTCTCAGTCTCCT	C C	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02055.hp2 HG02258.hp1 others(9): Show HG01496.hp2 HG02055.hp2 HG02258.hp1 HG02451.hp2 HG02486.hp2 HG02647.hp1 HG02895.hp1 HG03098.hp2 HG03139.hp2 HG03540.hp2 NA18906.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0011	a0001c0001t0012 a0001c0002t0038 a0001c0003t0009 others(2): Show a0001c0001t0012 a0001c0002t0038 a0001c0003t0009 a0001c0011t0006 a0001c0011t0022	a0001c0001t0012g0175 a0001c0001t0012g0191 a0001c0001t0012g0239 others(9): Show a0001c0001t0012g0175 a0001c0001t0012g0191 a0001c0001t0012g0239 a0001c0001t0012g0262 a0001c0002t0038g0150 a0001c0003t0009g0032 a0001c0003t0009g0154 a0001c0003t0009g0161 a0001c0003t0009g0192 a0001c0003t0009g0247 a0001c0011t0006g0176 a0001c0011t0022g0002	12	270	0.0444	-13	c.378 others(32): Show c.378+23365_378+23377delCTCAGTCTCCTTT	SGPP2	ENSG00000163082.10	transcript	ENST00000321276.8	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr2	TogoVar
SGSH_chr17_80204276_80225333	80209549	AGAGGACG others(6): Show AGAGGACGGGCATC	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0115 a0001c0001t0011g0115	1	418	0.0024	-13	c.89 others(22): Show c.890_*902delGATGCCCGTCCTC	SGSH	ENSG00000181523.13	transcript	ENST00000326317.11	protein_coding	8/8	890		chr17	TogoVar
SGSM1_chr22_24801211_24932578	24851450	GAGAGAGA others(6): Show GAGAGAGAGAGAGA	G G	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01243.hp2 HG01258.hp2 others(22): Show HG01109.hp2 HG01243.hp2 HG01258.hp2 HG02055.hp2 HG02109.hp1 HG02109.hp2 HG02258.hp1 HG02258.hp2 HG02486.hp2 HG02615.hp1 HG02809.hp2 HG02818.hp2 HG02896.hp1 HG02896.hp2 HG02970.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03209.hp1 HG03471.hp2 HG03516.hp2 NA19030.hp2 NA19240.hp1 NA20300.hp1 NA21309.hp2	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0006 a0011	a0001c0001 a0001c0005 a0001c0020 others(8): Show a0001c0001 a0001c0005 a0001c0020 a0002c0002 a0003c0003 a0003c0010 a0004c0016 a0004c0042 a0006c0039 a0006c0040 a0011c0043	a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 others(14): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 a0001c0005t0001 a0001c0005t0009 a0001c0005t0013 a0001c0020t0010 a0002c0002t0003 a0003c0003t0001 a0003c0003t0017 a0003c0003t0020 a0003c0010t0001 a0004c0016t0041 a0004c0042t0010 a0006c0039t0042 a0006c0040t0012 a0011c0043t0001	a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0125 others(22): Show a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0125 a0001c0001t0001g0299 a0001c0001t0001g0315 a0001c0001t0002g0286 a0001c0001t0010g0298 a0001c0005t0001g0009 a0001c0005t0001g0045 a0001c0005t0001g0122 a0001c0005t0009g0007 a0001c0005t0009g0326 a0001c0005t0013g0043 a0001c0020t0010g0336 a0002c0002t0003g0318 a0003c0003t0001g0293 a0003c0003t0017g0040 a0003c0003t0020g0071 a0003c0010t0001g0066 a0003c0010t0001g0296 a0004c0016t0041g0124 a0004c0042t0010g0305 a0006c0039t0042g0025 a0006c0040t0012g0304 a0011c0043t0001g0289	25	323	0.0774	-13	c.455 others(30): Show c.455+1019_455+1031delAGAGAGAGAGAGA	SGSM1	ENSG00000167037.19	transcript	ENST00000400358.9	protein_coding	5/24			chr22	TogoVar

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