Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZYG11A_chr1_52837760_52899998	52886699	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0070 a0001c0001t0001g0070	1	89	0.0112	-13	c.200 others(30): Show c.2007-241_2007-229delTTTTTTTTTTTTT		ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	12/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52773627	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02897.hp1 HG02895.hp1 HG02897.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0020 a0001c0003t0020	a0001c0003t0020g0201 a0001c0003t0020g0208 a0001c0003t0020g0201 a0001c0003t0020g0208	2	157	0.0127	-13	c.951 others(30): Show c.951+1874_951+1886delTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52811995	CACTCCAG others(6): Show CACTCCAGCCTGGG	C C	intron_variant intron_variant	MODIFIER	HG02683.hp2 HG02683.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0075 a0001c0001t0001g0075	1	350	0.0029	-13	c.169 others(32): Show c.1696-1540_1696-1528delACTCCAGCCTGGG		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	10/13						chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817815	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00597.hp1 NA18961.hp1 NA18981.hp1 HG00597.hp1 NA18961.hp1 NA18981.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0062 a0001c0001t0001 a0001c0001t0062	a0001c0001t0001g0061 a0001c0001t0001g0063 a0001c0001t0062g0089 a0001c0001t0001g0061 a0001c0001t0001g0063 a0001c0001t0062g0089	3	281	0.0107	-13	c.204 others(32): Show c.2044+1214_2044+1226delTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYX_chr7_143376345_143396111	143379004	TTTGAATA others(6): Show TTTGAATATTCCGC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19076.hp2 NA19076.hp2	a0011 a0011	a0011c0013 a0011c0013	a0011c0013t0001 a0011c0013t0001	a0011c0013t0001g0096 a0011c0013t0001g0096	1	452	0.0022	-13	c.-24 others(24): Show c.-2420_-2408delTTGAATATTCCGC		ZYX	ENSG00000159840.16	transcript	ENST00000322764.10	protein_coding					2340		chr7	TogoVar
	ZYX_chr7_143376345_143396111	143386033	AGTGTATG others(6): Show AGTGTATGTGAGTG	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00323.hp2 others(57): Show HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00408.hp2 HG00544.hp2 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp2 HG01099.hp2 HG01123.hp1 HG01169.hp1 HG01256.hp2 HG01261.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp2 HG01516.hp1 HG01517.hp2 HG01884.hp2 HG01943.hp2 HG02056.hp2 HG02071.hp1 HG02074.hp2 HG02258.hp1 HG02280.hp2 HG02572.hp1 HG02572.hp2 HG02683.hp1 HG02717.hp1 HG02895.hp1 HG02897.hp1 HG02965.hp2 HG03516.hp1 HG03688.hp2 HG03710.hp2 HG04184.hp1 NA18942.hp2 NA18943.hp1 NA18947.hp1 NA18954.hp1 NA18962.hp1 NA18969.hp2 NA18970.hp2 NA18975.hp1 NA18977.hp1 NA18979.hp1 NA18980.hp1 NA18998.hp1 NA19000.hp1 NA19004.hp1 NA19012.hp2 NA19054.hp2 NA19055.hp2 NA19067.hp2 NA19068.hp1 NA19068.hp2 NA20805.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0001c0001t0003 a0001c0001t0011 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0011 a0002c0002t0003 a0003c0003t0003	a0001c0001t0001g0008 a0001c0001t0003g0007 a0001c0001t0003g0008 others(16): Show a0001c0001t0001g0008 a0001c0001t0003g0007 a0001c0001t0003g0008 a0001c0001t0003g0012 a0001c0001t0003g0013 a0001c0001t0003g0026 a0001c0001t0003g0047 a0001c0001t0003g0058 a0001c0001t0003g0091 a0001c0001t0003g0092 a0001c0001t0003g0093 a0001c0001t0003g0097 a0001c0001t0003g0109 a0001c0001t0003g0133 a0001c0001t0011g0134 a0002c0002t0003g0008 a0003c0003t0003g0020 a0003c0003t0003g0074 a0003c0003t0003g0075	60	452	0.1327	-13	c.102 others(32): Show c.1024-2176_1024-2164delAGTGGTGTATGTG		ZYX	ENSG00000159840.16	transcript	ENST00000322764.10	protein_coding	5/9					INFO_REALIGN_3_PRIME	chr7	TogoVar
	ZZEF1_chr17_3999445_4148030	4036818	CTCTCTCT others(6): Show CTCTCTCTCTCTCT	C C	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0005 a0005	a0005c0056 a0005c0056	a0005c0056t0003 a0005c0056t0003	a0005c0056t0003g0220 a0005c0056t0003g0220	1	294	0.0034	-13	c.630 others(32): Show c.6307-2539_6307-2527delAGAGAGAGAGAGA		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	39/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4124609	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA19081.hp1 NA19081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0115 a0001c0001t0001g0115	1	27	0.0370	-13	c.355 others(28): Show c.355-571_355-559delAAAAAAAAAAAAA		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	1/54						chr17	TogoVar
	ZZZ3_chr1_77557416_77687658	77618233	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA19009.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0165 a0001c0001t0001g0165	1	109	0.0092	-13	c.150 others(34): Show c.1505+13604_1505+13616delAAAAAAAAAAAAA		ZZZ3	ENSG00000036549.13	transcript	ENST00000370801.8	protein_coding	5/14						chr1	TogoVar