Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZYG11A_chr1_52837760_52899998	52859667	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02486.hp1 HG02630.hp1 others(8): Show HG01891.hp1 HG02486.hp1 HG02630.hp1 HG02647.hp2 HG02723.hp1 HG02896.hp1 HG02897.hp2 HG02970.hp2 HG03579.hp1 NA19240.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0006 a0001c0001t0004 a0001c0001t0006	a0001c0001t0004g0039 a0001c0001t0004g0040 a0001c0001t0004g0041 others(8): Show a0001c0001t0004g0039 a0001c0001t0004g0040 a0001c0001t0004g0041 a0001c0001t0004g0042 a0001c0001t0004g0043 a0001c0001t0004g0044 a0001c0001t0004g0045 a0001c0001t0004g0046 a0001c0001t0004g0047 a0001c0001t0004g0049 a0001c0001t0006g0048	11	124	0.0887	-14	c.100 others(33): Show c.1009-1049_1009-1036delTTTTTTTTTTTTTT		ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11A_chr1_52837760_52899998	52874103	TGATCACC others(7): Show TGATCACCATCTTGA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00323.hp2 HG00423.hp1 others(169): Show HG00099.hp1 HG00323.hp2 HG00423.hp1 HG00544.hp2 HG00558.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG01069.hp2 HG01106.hp1 HG01109.hp2 HG01167.hp1 HG01167.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp2 HG01257.hp1 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01358.hp1 HG01433.hp1 HG01433.hp2 HG01515.hp2 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01993.hp1 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02083.hp2 HG02109.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02486.hp1 HG02486.hp2 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03017.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp2 HG03927.hp1 HG04184.hp1 HG04199.hp1 HG04199.hp2 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18612.hp2 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp2 NA18940.hp1 NA18946.hp2 NA18948.hp2 NA18954.hp1 NA18959.hp2 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18964.hp1 NA18968.hp2 NA18969.hp2 NA18971.hp1 NA18973.hp2 NA18981.hp1 NA18983.hp2 NA18984.hp1 NA18986.hp1 NA18989.hp1 NA18994.hp2 NA18995.hp2 NA18997.hp2 NA18998.hp2 NA19000.hp1 NA19004.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19056.hp1 NA19058.hp2 NA19065.hp2 NA19079.hp1 NA19082.hp2 NA19084.hp1 NA19087.hp1 NA19088.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA21309.hp1 NA21309.hp2	a0001 a0003 a0004 others(6): Show a0001 a0003 a0004 a0005 a0006 a0007 a0008 a0011 a0012	a0001c0001 a0001c0013 a0001c0016 others(8): Show a0001c0001 a0001c0013 a0001c0016 a0003c0003 a0004c0004 a0005c0007 a0006c0006 a0007c0005 a0008c0015 a0011c0014 a0012c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(30): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0019 a0001c0001t0020 a0001c0001t0022 a0001c0001t0023 a0001c0013t0005 a0001c0016t0004 a0003c0003t0001 a0003c0003t0002 a0003c0003t0009 a0003c0003t0010 a0003c0003t0012 a0004c0004t0006 a0004c0004t0007 a0005c0007t0001 a0006c0006t0002 a0007c0005t0013 a0008c0015t0001 a0011c0014t0002 a0012c0012t0002	a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0015 others(165): Show a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0024 a0001c0001t0001g0070 a0001c0001t0001g0073 a0001c0001t0001g0083 a0001c0001t0001g0087 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0259 a0001c0001t0001g0262 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0277 a0001c0001t0001g0278 a0001c0001t0001g0279 a0001c0001t0001g0280 a0001c0001t0001g0281 a0001c0001t0001g0282 a0001c0001t0001g0283 a0001c0001t0001g0284 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0052 a0001c0001t0002g0053 a0001c0001t0002g0054 a0001c0001t0002g0055 a0001c0001t0002g0056 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0063 a0001c0001t0002g0064 a0001c0001t0002g0065 a0001c0001t0002g0066 a0001c0001t0002g0067 a0001c0001t0002g0069 a0001c0001t0002g0071 a0001c0001t0002g0074 a0001c0001t0002g0075 a0001c0001t0002g0076 a0001c0001t0002g0077 a0001c0001t0002g0079 a0001c0001t0002g0093 a0001c0001t0002g0139 a0001c0001t0002g0140 a0001c0001t0002g0261 a0001c0001t0002g0263 a0001c0001t0002g0266 a0001c0001t0002g0270 a0001c0001t0003g0002 a0001c0001t0003g0003 a0001c0001t0003g0099 a0001c0001t0003g0100 a0001c0001t0003g0103 a0001c0001t0003g0105 a0001c0001t0003g0106 a0001c0001t0003g0107 a0001c0001t0003g0109 a0001c0001t0003g0110 a0001c0001t0003g0111 a0001c0001t0003g0112 a0001c0001t0003g0113 a0001c0001t0003g0114 a0001c0001t0003g0115 a0001c0001t0003g0116 a0001c0001t0003g0118 a0001c0001t0003g0120 a0001c0001t0003g0121 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0003g0125 a0001c0001t0003g0126 a0001c0001t0003g0127 a0001c0001t0003g0128 a0001c0001t0003g0129 a0001c0001t0003g0130 a0001c0001t0003g0133 a0001c0001t0003g0134 a0001c0001t0003g0135 a0001c0001t0003g0141 a0001c0001t0004g0001 a0001c0001t0004g0026 a0001c0001t0004g0027 a0001c0001t0004g0028 a0001c0001t0004g0029 a0001c0001t0004g0030 a0001c0001t0004g0031 a0001c0001t0004g0032 a0001c0001t0004g0039 a0001c0001t0004g0040 a0001c0001t0004g0041 a0001c0001t0004g0042 a0001c0001t0004g0043 a0001c0001t0004g0044 a0001c0001t0004g0045 a0001c0001t0004g0046 a0001c0001t0004g0047 a0001c0001t0004g0049 a0001c0001t0005g0017 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0021 a0001c0001t0005g0022 a0001c0001t0005g0023 a0001c0001t0005g0025 a0001c0001t0006g0048 a0001c0001t0006g0096 a0001c0001t0007g0094 a0001c0001t0007g0095 a0001c0001t0007g0097 a0001c0001t0007g0098 a0001c0001t0008g0084 a0001c0001t0008g0085 a0001c0001t0008g0086 a0001c0001t0008g0276 a0001c0001t0009g0050 a0001c0001t0009g0059 a0001c0001t0009g0260 a0001c0001t0010g0006 a0001c0001t0010g0255 a0001c0001t0011g0057 a0001c0001t0011g0058 a0001c0001t0014g0119 a0001c0001t0014g0132 a0001c0001t0015g0108 a0001c0001t0017g0034 a0001c0001t0019g0037 a0001c0001t0020g0033 a0001c0001t0022g0102 a0001c0001t0023g0131 a0001c0013t0005g0020 a0001c0016t0004g0136 a0003c0003t0001g0009 a0003c0003t0001g0013 a0003c0003t0002g0010 a0003c0003t0009g0011 a0003c0003t0010g0082 a0003c0003t0012g0080 a0003c0003t0012g0081 a0004c0004t0006g0088 a0004c0004t0006g0090 a0004c0004t0006g0091 a0004c0004t0006g0092 a0004c0004t0007g0089 a0005c0007t0001g0007 a0005c0007t0001g0012 a0006c0006t0002g0068 a0006c0006t0002g0072 a0007c0005t0013g0101 a0007c0005t0013g0117 a0008c0015t0001g0008 a0011c0014t0002g0051 a0012c0012t0002g0078	172	288	0.5972	-14	c.154 others(33): Show c.1543-3578_1543-3565delGATCACCATCTTGA		ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	8/13						chr1	TogoVar
	ZYG11A_chr1_52837760_52899998	52896860	TGCCGTCT others(7): Show TGCCGTCTGCAGTGG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18946.hp1 NA18946.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0021 a0002c0002t0021	a0002c0002t0021g0193 a0002c0002t0021g0193	1	288	0.0035	-14	c.39 others(25): Show c.3904_*3917delGCCGTCTGCAGTGG		ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding					1863		chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52773599	CTATATAT others(7): Show CTATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG02683.hp1 HG04204.hp2 HG01346.hp2 HG02683.hp1 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0008 a0001c0001t0001 a0001c0001t0004 a0001c0001t0008	a0001c0001t0001g0084 a0001c0001t0004g0013 a0001c0001t0008g0165 a0001c0001t0001g0084 a0001c0001t0004g0013 a0001c0001t0008g0165	3	260	0.0115	-14	c.951 others(31): Show c.951+1841_951+1854delATATATATATATAT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52797126	TTATATAT others(7): Show TTATATATTTATATA	T T	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02486.hp1 HG02630.hp2 others(7): Show HG01891.hp2 HG02486.hp1 HG02630.hp2 HG02647.hp1 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02970.hp2 HG03579.hp2 NA19240.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0012 a0001c0003t0015 a0001c0003t0020 a0001c0003t0012 a0001c0003t0015 a0001c0003t0020	a0001c0003t0012g0200 a0001c0003t0012g0202 a0001c0003t0012g0204 others(7): Show a0001c0003t0012g0200 a0001c0003t0012g0202 a0001c0003t0012g0204 a0001c0003t0015g0205 a0001c0003t0015g0209 a0001c0003t0015g0210 a0001c0003t0015g0211 a0001c0003t0020g0201 a0001c0003t0020g0203 a0001c0003t0020g0208	10	349	0.0287	-14	c.148 others(31): Show c.1485+344_1485+357delATATATTTATATAT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	8/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52801134	AAGGAAAT others(7): Show AAGGAAATAAAAAGG	A A	intron_variant intron_variant	MODIFIER	NA18949.hp2 NA18949.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0272 a0001c0001t0048g0272	1	350	0.0029	-14	c.148 others(31): Show c.1486-684_1486-671delAGGAAATAAAAAGG		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	8/13						chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52803087	CATATATA others(7): Show CATATATATATACAT	C C	intron_variant intron_variant	MODIFIER	NA18939.hp2 NA18939.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0054 a0001c0001t0009g0054	1	348	0.0029	-14	c.169 others(31): Show c.1695+960_1695+973delCATATATATATATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	10/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817815	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01243.hp1 NA19062.hp1 NA19082.hp1 others(1): Show HG01243.hp1 NA19062.hp1 NA19082.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0011 a0001c0001t0001 a0001c0001t0011	a0001c0001t0001g0066 a0001c0001t0001g0100 a0001c0001t0001g0259 others(1): Show a0001c0001t0001g0066 a0001c0001t0001g0100 a0001c0001t0001g0259 a0001c0001t0011g0086	4	282	0.0142	-14	c.204 others(33): Show c.2044+1213_2044+1226delTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZZEF1_chr17_3999445_4148030	4036809	ACACACAC others(7): Show ACACACACACTCTCT	A A	intron_variant intron_variant	MODIFIER	HG02738.hp1 NA19030.hp1 HG02738.hp1 NA19030.hp1	a0002 a0007 a0002 a0007	a0002c0002 a0007c0006 a0002c0002 a0007c0006	a0002c0002t0012 a0007c0006t0011 a0002c0002t0012 a0007c0006t0011	a0002c0002t0012g0291 a0007c0006t0011g0206 a0002c0002t0012g0291 a0007c0006t0011g0206	2	293	0.0068	-14	c.630 others(33): Show c.6307-2531_6307-2518delAGAGAGTGTGTGTG		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	39/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4036813	ACACACTC others(7): Show ACACACTCTCTCTCT	A A	intron_variant intron_variant	MODIFIER	HG02135.hp1 NA18974.hp1 NA19064.hp2 HG02135.hp1 NA18974.hp1 NA19064.hp2	a0002 a0003 a0028 a0002 a0003 a0028	a0002c0002 a0003c0003 a0028c0035 a0002c0002 a0003c0003 a0028c0035	a0002c0002t0001 a0003c0003t0010 a0028c0035t0004 a0002c0002t0001 a0003c0003t0010 a0028c0035t0004	a0002c0002t0001g0194 a0003c0003t0010g0271 a0028c0035t0004g0275 a0002c0002t0001g0194 a0003c0003t0010g0271 a0028c0035t0004g0275	3	258	0.0116	-14	c.630 others(33): Show c.6307-2535_6307-2522delAGAGAGAGAGTGTG		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	39/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4036815	ACACTCTC others(7): Show ACACTCTCTCTCTCT	A A	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00733.hp1 HG01106.hp2 others(12): Show HG00597.hp2 HG00733.hp1 HG01106.hp2 HG01123.hp1 HG01346.hp1 HG01361.hp2 HG02040.hp2 HG03239.hp1 HG03704.hp1 HG03704.hp2 HG03942.hp2 HG04115.hp1 NA19043.hp2 NA20300.hp1 NA20805.hp1	a0003 a0024 a0003 a0024	a0003c0003 a0003c0036 a0003c0044 others(1): Show a0003c0003 a0003c0036 a0003c0044 a0024c0046	a0003c0003t0004 a0003c0003t0010 a0003c0003t0013 others(3): Show a0003c0003t0004 a0003c0003t0010 a0003c0003t0013 a0003c0036t0004 a0003c0044t0004 a0024c0046t0003	a0003c0003t0004g0260 a0003c0003t0004g0262 a0003c0003t0004g0263 others(12): Show a0003c0003t0004g0260 a0003c0003t0004g0262 a0003c0003t0004g0263 a0003c0003t0004g0266 a0003c0003t0004g0268 a0003c0003t0004g0269 a0003c0003t0004g0274 a0003c0003t0004g0276 a0003c0003t0004g0283 a0003c0003t0010g0267 a0003c0003t0013g0280 a0003c0003t0013g0281 a0003c0036t0004g0259 a0003c0044t0004g0279 a0024c0046t0003g0037	15	260	0.0577	-14	c.630 others(33): Show c.6307-2537_6307-2524delAGAGAGAGAGAGTG		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	39/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4112033	AATATATA others(7): Show AATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG01361.hp2 HG02258.hp2 others(6): Show HG00733.hp1 HG01361.hp2 HG02258.hp2 HG02630.hp2 NA18974.hp1 NA18982.hp2 NA18993.hp1 NA19010.hp1 NA19064.hp1	a0001 a0003 a0005 others(1): Show a0001 a0003 a0005 a0027	a0001c0001 a0003c0003 a0005c0011 others(1): Show a0001c0001 a0003c0003 a0005c0011 a0027c0041	a0001c0001t0001 a0003c0003t0004 a0003c0003t0010 others(2): Show a0001c0001t0001 a0003c0003t0004 a0003c0003t0010 a0005c0011t0003 a0027c0041t0010	a0001c0001t0001g0091 a0003c0003t0004g0268 a0003c0003t0004g0269 others(6): Show a0001c0001t0001g0091 a0003c0003t0004g0268 a0003c0003t0004g0269 a0003c0003t0004g0270 a0003c0003t0010g0271 a0003c0003t0010g0272 a0005c0011t0003g0251 a0005c0011t0003g0253 a0027c0041t0010g0290	9	45	0.2000	-14	c.106 others(31): Show c.1066+562_1066+575delATATATATATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54						chr17	TogoVar