Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZZEF1_chr17_3999445_4148030	4005977	CCAGAGGT others(8): Show CCAGAGGTGGGTATGA	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19086.hp2 NA19086.hp2	a0001 a0001	a0001c0054 a0001c0054	a0001c0054t0024 a0001c0054t0024	a0001c0054t0024g0025 a0001c0054t0024g0025	1	294	0.0034	-15	c.89 others(24): Show c.898_*912delTCATACCCACCTCTG		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	55/55				898		chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4016229	AGAGGGGC others(8): Show AGAGGGGCTGAGCATG	A A	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0005 a0005	a0005c0056 a0005c0056	a0005c0056t0003 a0005c0056t0003	a0005c0056t0003g0220 a0005c0056t0003g0220	1	294	0.0034	-15	c.814 others(30): Show c.8145+79_8145+93delCATGCTCAGCCCCTC		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	49/54						chr17	TogoVar