Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SNRNP40_chr1_31254568_31301788	31282466	GCTATCTA others(13): Show GCTATCTATCTATCTATGTAT	G G	intron_variant intron_variant	MODIFIER	HG01952.hp1 HG02300.hp2 HG02572.hp2 others(2): Show HG01952.hp1 HG02300.hp2 HG02572.hp2 HG02895.hp2 NA19057.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0010 a0001c0001t0003 a0001c0001t0004 a0001c0001t0010	a0001c0001t0003g0175 a0001c0001t0003g0176 a0001c0001t0004g0289 others(2): Show a0001c0001t0003g0175 a0001c0001t0003g0176 a0001c0001t0004g0289 a0001c0001t0010g0064 a0001c0001t0010g0065	5	349	0.0143	-20	c.532 others(35): Show c.532-990_532-971delATACATAGATAGATAGATAG	SNRNP40	ENSG00000060688.13	transcript	ENST00000263694.9	protein_coding	4/9			chr1	TogoVar
SNRPD3_chr22_24550999_24579971	24560428	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG03540.hp2 HG01884.hp2 HG03540.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0216 a0001c0002t0003g0217 a0001c0002t0003g0216 a0001c0002t0003g0217	2	17	0.1176	-20	c.126 others(37): Show c.126+2647_126+2666delTTTTTTTTTTTTTTTTTTTT	SNRPD3	ENSG00000100028.12	transcript	ENST00000215829.8	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr22	TogoVar
SNRPE_chr1_203856599_203876152	203869289	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG03471.hp2 HG02970.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0047 a0001c0001t0001g0048	2	7	0.2857	-20	c.224 others(35): Show c.224-573_224-554delTTTTTTTTTTTTTTTTTTTT	SNRPE	ENSG00000182004.13	transcript	ENST00000414487.7	protein_coding	4/4		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNTB2_chr16_69182164_69314052	69292398	ATATATAT others(13): Show ATATATATATTATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02723.hp2 HG02886.hp1 HG02004.hp2 HG02723.hp2 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0011 a0001c0002t0004 a0001c0001t0011 a0001c0002t0004	a0001c0001t0011g0168 a0001c0001t0011g0169 a0001c0002t0004g0031 a0001c0001t0011g0168 a0001c0001t0011g0169 a0001c0002t0004g0031	3	216	0.0139	-20	c.134 others(39): Show c.1346-7182_1346-7163delTATATATATATTATATATAT	SNTB2	ENSG00000168807.17	transcript	ENST00000336278.9	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNTB2_chr16_69182164_69314052	69310070	GTTTTTTT others(13): Show GTTTTTTTTTTTTTTTTTTTT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0078 a0001c0001t0010g0078	1	19	0.0526	-20	c.91 others(31): Show c.9147_*9166delTTTTTTTTTTTTTTTTTTTT	SNTB2	ENSG00000168807.17	transcript	ENST00000336278.9	protein_coding		1019		chr16	TogoVar
SNTG1_chr8_49906407_50801692	50259508	AAAAGAAA others(13): Show AAAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01192.hp2 NA20300.hp1 HG01192.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0033 a0001c0001t0037 a0001c0001t0033 a0001c0001t0037	a0001c0001t0033g0056 a0001c0001t0037g0034 a0001c0001t0033g0056 a0001c0001t0037g0034	2	71	0.0282	-20	c.-28 others(39): Show c.-28+86919_-28+86938delAAGAAAGAAAGAAAGAAAGA	SNTG1	ENSG00000147481.17	transcript	ENST00000642720.2	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr8	TogoVar
SNTG1_chr8_49906407_50801692	50462794	CTCTTTTT others(13): Show CTCTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG03225.hp2 HG02647.hp1 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0097 a0001c0001t0011g0099 a0001c0001t0011g0097 a0001c0001t0011g0099	2	58	0.0345	-20	c.363 others(39): Show c.363+12067_363+12086delCTTTTTTTTTTTTTTTTTTT	SNTG1	ENSG00000147481.17	transcript	ENST00000642720.2	protein_coding	8/18		INFO_REALIGN_3_PRIME	chr8	TogoVar
SNTG1_chr8_49906407_50801692	50462796	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0021 a0001c0002t0021	a0001c0002t0021g0073 a0001c0002t0021g0073	1	54	0.0185	-20	c.363 others(39): Show c.363+12087_363+12106delTTTTTTTTTTTTTTTTTTTT	SNTG1	ENSG00000147481.17	transcript	ENST00000642720.2	protein_coding	8/18		INFO_REALIGN_3_PRIME	chr8	TogoVar
SNTG1_chr8_49906407_50801692	50763856	AACACACA others(13): Show AACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01243.hp2 HG02055.hp2 others(4): Show HG01071.hp2 HG01243.hp2 HG02055.hp2 HG02809.hp2 HG03139.hp2 HG03516.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0013 a0001c0001t0016 a0001c0001t0030 others(3): Show a0001c0001t0013 a0001c0001t0016 a0001c0001t0030 a0001c0001t0048 a0001c0002t0021 a0001c0002t0047	a0001c0001t0013g0009 a0001c0001t0013g0067 a0001c0001t0016g0003 others(4): Show a0001c0001t0013g0009 a0001c0001t0013g0067 a0001c0001t0016g0003 a0001c0001t0030g0053 a0001c0001t0048g0105 a0001c0002t0021g0073 a0001c0002t0047g0103	7	34	0.2059	-20	c.139 others(41): Show c.1395+11777_1395+11796delCACACACACACACACACACA	SNTG1	ENSG00000147481.17	transcript	ENST00000642720.2	protein_coding	18/18		INFO_REALIGN_3_PRIME	chr8	TogoVar
SNTG2_chr2_945849_1372613	1005806	AATATATA others(13): Show AATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02109.hp1 HG02486.hp2 others(5): Show HG01891.hp2 HG02109.hp1 HG02486.hp2 HG02615.hp2 HG02886.hp2 HG02895.hp2 NA18986.hp2 NA21309.hp2	a0002 a0003 a0007 others(2): Show a0002 a0003 a0007 a0013 a0016	a0002c0003 a0003c0007 a0007c0016 others(3): Show a0002c0003 a0003c0007 a0007c0016 a0007c0017 a0013c0018 a0016c0023	a0002c0003t0001 a0003c0007t0001 a0007c0016t0001 others(3): Show a0002c0003t0001 a0003c0007t0001 a0007c0016t0001 a0007c0017t0001 a0013c0018t0001 a0016c0023t0001	a0002c0003t0001g0171 a0003c0007t0001g0116 a0007c0016t0001g0005 others(5): Show a0002c0003t0001g0171 a0003c0007t0001g0116 a0007c0016t0001g0005 a0007c0016t0001g0143 a0007c0017t0001g0106 a0007c0017t0001g0125 a0013c0018t0001g0046 a0016c0023t0001g0049	8	18	0.4444	-20	c.72+ others(37): Show c.72+54788_72+54807delTATATATATATATATATATA	SNTG2	ENSG00000172554.12	transcript	ENST00000308624.10	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
SNTG2_chr2_945849_1372613	1190495	CTATATAT others(13): Show CTATATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02895.hp2 NA18942.hp1 others(2): Show HG01891.hp2 HG02895.hp2 NA18942.hp1 NA19000.hp2 NA21309.hp2	a0002 a0007 a0021 a0002 a0007 a0021	a0002c0003 a0007c0016 a0007c0017 others(1): Show a0002c0003 a0007c0016 a0007c0017 a0021c0027	a0002c0003t0001 a0007c0016t0001 a0007c0017t0001 others(1): Show a0002c0003t0001 a0007c0016t0001 a0007c0017t0001 a0021c0027t0001	a0002c0003t0001g0122 a0007c0016t0001g0005 a0007c0016t0001g0143 others(2): Show a0002c0003t0001g0122 a0007c0016t0001g0005 a0007c0016t0001g0143 a0007c0017t0001g0106 a0021c0027t0001g0136	5	38	0.1316	-20	c.591 others(39): Show c.591+17338_591+17357delATATATATATATATATATAT	SNTG2	ENSG00000172554.12	transcript	ENST00000308624.10	protein_coding	8/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
SNTG2_chr2_945849_1372613	1222031	ATCTCTGT others(13): Show ATCTCTGTCTCTCTCTGTCTC	A A	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02132.hp1 HG02738.hp2 HG02071.hp2 HG02132.hp1 HG02738.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0005 a0001c0002 a0002c0005	a0001c0002t0001 a0002c0005t0001 a0001c0002t0001 a0002c0005t0001	a0001c0002t0001g0014 a0001c0002t0001g0016 a0002c0005t0001g0107 a0001c0002t0001g0014 a0001c0002t0001g0016 a0002c0005t0001g0107	3	66	0.0455	-20	c.719 others(39): Show c.719+12813_719+12832delCTCTGTCTCTCTCTGTCTCT	SNTG2	ENSG00000172554.12	transcript	ENST00000308624.10	protein_coding	9/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
SNTG2_chr2_945849_1372613	1222079	GTCTCTGT others(13): Show GTCTCTGTCTCTCTCTGTCTC	G G	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0088 a0004c0004t0001g0088	1	166	0.0060	-20	c.719 others(39): Show c.719+12901_719+12920delCTCTGTCTCTCTCTGTCTCT	SNTG2	ENSG00000172554.12	transcript	ENST00000308624.10	protein_coding	9/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
SNTG2_chr2_945849_1372613	1309580	TGGGCACA others(13): Show TGGGCACAGGGCCCCACACAG	T T	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02486.hp1 HG02559.hp2 others(4): Show HG02451.hp1 HG02486.hp1 HG02559.hp2 HG02615.hp1 HG03453.hp1 HG03486.hp2 HG03540.hp1	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0002 a0003c0007 a0003c0026 others(1): Show a0001c0002 a0003c0007 a0003c0026 a0005c0015	a0001c0002t0002 a0003c0007t0001 a0003c0007t0002 others(2): Show a0001c0002t0002 a0003c0007t0001 a0003c0007t0002 a0003c0026t0001 a0005c0015t0001	a0001c0002t0002g0076 a0003c0007t0001g0007 a0003c0007t0001g0104 others(4): Show a0001c0002t0002g0076 a0003c0007t0001g0007 a0003c0007t0001g0104 a0003c0007t0002g0075 a0003c0007t0002g0077 a0003c0026t0001g0097 a0005c0015t0001g0103	7	188	0.0372	-20	c.137 others(38): Show c.1377+997_1377+1016delGCACAGGGCCCCACACAGGG	SNTG2	ENSG00000172554.12	transcript	ENST00000308624.10	protein_coding	15/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
SNW1_chr14_77712599_77766156	77751805	GACACACA others(13): Show GACACACACACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02615.hp2 HG03486.hp2 HG02572.hp2 HG02615.hp2 HG03486.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0057 a0001c0003t0001g0064 a0001c0003t0001g0065 a0001c0003t0001g0057 a0001c0003t0001g0064 a0001c0003t0001g0065	3	217	0.0138	-20	c.169 others(35): Show c.169-345_169-326delGTGTGTGTGTGTGTGTGTGT	SNW1	ENSG00000100603.14	transcript	ENST00000261531.12	protein_coding	2/13			chr14	TogoVar
SNX13_chr7_17785761_17945494	17801009	CATATATA others(13): Show CATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01517.hp1 HG01978.hp2 HG01257.hp1 HG01517.hp1 HG01978.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0029 a0001c0002t0002 a0001c0001t0029 a0001c0002t0002	a0001c0001t0029g0037 a0001c0002t0002g0285 a0001c0002t0002g0286 a0001c0001t0029g0037 a0001c0002t0002g0285 a0001c0002t0002g0286	3	15	0.2000	-20	c.229 others(37): Show c.2298+559_2298+578delATATATATATATATATATAT	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	22/25			chr7	TogoVar
SNX13_chr7_17785761_17945494	17825257	AACTAGAC others(13): Show AACTAGACTAGACTAGACTAG	A A	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0019 a0001c0001t0014g0019	1	103	0.0097	-20	c.170 others(37): Show c.1705+745_1705+764delCTAGTCTAGTCTAGTCTAGT	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	17/25			chr7	TogoVar
SNX16_chr8_81794583_81847185	81796365	TACACACA others(13): Show TACACACACACACACACACAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01081.hp2 HG01261.hp2 HG02004.hp2 others(8): Show HG01081.hp2 HG01261.hp2 HG02004.hp2 HG02257.hp1 HG02258.hp1 HG02280.hp2 HG02622.hp1 HG02897.hp1 HG02965.hp2 HG03130.hp2 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0044 a0001c0001t0001g0050	11	26	0.4231	-20	c.51 others(31): Show c.5112_*5131delGTGTGTGTGTGTGTGTGTGT	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		3217		chr8	TogoVar
SNX16_chr8_81794583_81847185	81842367	GGAGGGAG others(13): Show GGAGGGAGGGAGGGAGGGAGA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01952.hp2 HG01975.hp1 HG01993.hp2 others(1): Show HG01952.hp2 HG01975.hp1 HG01993.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	4	218	0.0183	-20	c.-36 others(29): Show c.-362_-343delTCTCCCTCCCTCCCTCCCTC	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		183		chr8	TogoVar
SNX16_chr8_81794583_81847185	81842468	CAGAGAGA others(13): Show CAGAGAGAGAGAGAGAGAGAG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp2 HG01169.hp1 HG02698.hp2 others(1): Show HG01168.hp2 HG01169.hp1 HG02698.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0021 a0001c0001t0001g0054 a0001c0001t0001g0017 a0001c0001t0001g0021 a0001c0001t0001g0054	4	54	0.0741	-20	c.-46 others(29): Show c.-463_-444delCTCTCTCTCTCTCTCTCTCT	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		284		chr8	TogoVar
SNX18_chr5_54512759_54551586	54512862	CCTTCCTT others(13): Show CCTTCCTTCCTTCCCTTCCTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0011 a0001c0004t0011	a0001c0004t0011g0025 a0001c0004t0011g0025	1	379	0.0026	-20	c.-50 others(31): Show c.-5090_-5071delCTTCCTTCCTTCCCTTCCTT	SNX18	ENSG00000178996.14	transcript	ENST00000381410.5	protein_coding		4896		chr5	TogoVar
SNX1_chr15_64090982_64149231	64124147	CATATATA others(13): Show CATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0044 a0001c0001t0044	a0001c0001t0044g0152 a0001c0001t0044g0152	1	7	0.1429	-20	c.510 others(35): Show c.510+614_510+633delATATATATATATATATATAT	SNX1	ENSG00000028528.15	transcript	ENST00000559844.6	protein_coding	5/14		INFO_REALIGN_3_PRIME	chr15	TogoVar
SNX1_chr15_64090982_64149231	64132129	CACTCTTG others(13): Show CACTCTTGAATTTCCGAATAG	C C	intron_variant intron_variant	MODIFIER	NA19003.hp1 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0018 a0001c0001t0002g0018	1	268	0.0037	-20	c.122 others(37): Show c.1221+238_1221+257delACTCTTGAATTTCCGAATAG	SNX1	ENSG00000028528.15	transcript	ENST00000559844.6	protein_coding	11/14			chr15	TogoVar
SNX20_chr16_50666629_50686312	50685036	TATCTCAT others(13): Show TATCTCATCTCATCTCATCTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0018 a0002c0003t0018	a0002c0003t0018g0174 a0002c0003t0018g0174	1	78	0.0128	-20	c.-38 others(31): Show c.-3876_-3857delGAGATGAGATGAGATGAGAT	SNX20	ENSG00000167208.16	transcript	ENST00000330943.9	protein_coding		3725		chr16	TogoVar
SNX25_chr4_185204598_185368966	185224430	AATATATA others(13): Show AATATATAGATATATAAATAT	A A	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01106.hp1 HG02109.hp2 others(5): Show HG00639.hp1 HG01106.hp1 HG02109.hp2 HG02165.hp2 HG02723.hp1 HG02895.hp2 HG03139.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 others(5): Show a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0091 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0205	8	274	0.0292	-20	c.429 others(39): Show c.429+14199_429+14218delTATAGATATATAAATATATA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185224510	GATATATA others(13): Show GATATATAAATATATATACAT	G G	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01099.hp1 HG02109.hp1 others(5): Show HG01081.hp1 HG01099.hp1 HG02109.hp1 HG02257.hp1 HG03041.hp1 HG03130.hp2 HG03453.hp1 NA18522.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0195 others(5): Show a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0198 a0001c0001t0001g0235 a0002c0002t0001g0253	8	269	0.0297	-20	c.429 others(39): Show c.429+14293_429+14312delCATATATATAAATATATATA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX27_chr1_151607050_151704080	151696461	TTTTCTTT others(13): Show TTTTCTTTCTTTCTTTCTTTC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00642.hp2 HG01256.hp1 HG01258.hp1 HG00642.hp2 HG01256.hp1 HG01258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0133 a0001c0001t0022g0136 a0001c0001t0022g0186 a0001c0001t0022g0133 a0001c0001t0022g0136 a0001c0001t0022g0186	3	226	0.0133	-20	c.20 others(31): Show c.2069_*2088delTTTCTTTCTTTCTTTCTTTC	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	12/12	2069	INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151696486	TTTCTTTC others(13): Show TTTCTTTCTTTCTTTCTTTCG	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18998.hp2 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0123 a0001c0001t0123	a0001c0001t0123g0063 a0001c0001t0123g0063	1	364	0.0027	-20	c.20 others(31): Show c.2077_*2096delTTTCTTTCTTTCGTTCTTTC	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	12/12	2077	INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151696502	TTTCGTTC others(13): Show TTTCGTTCTTTCGTTCTTTCG	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0109 a0001c0001t0109	a0001c0001t0109g0020 a0001c0001t0109g0020	1	343	0.0029	-20	c.20 others(31): Show c.2089_*2108delGTTCTTTCGTTCTTTCGTTC	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	12/12	2089	INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX29_chr16_11971734_12579287	12066980	AAAATAAA others(13): Show AAAATAAATAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03486.hp2 HG03225.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0002 a0001c0001t0006	a0001c0001t0002g0169 a0001c0001t0006g0064 a0001c0001t0002g0169 a0001c0001t0006g0064	2	15	0.1333	-20	c.124 others(39): Show c.1244-2042_1244-2023delATAAATAAATAAATAAATAA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	9/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12272228	GGTGCCTT others(13): Show GGTGCCTTGGGGACGGGGCTA	G G	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0065 a0001c0002t0065	a0001c0002t0065g0059 a0001c0002t0065g0059	1	174	0.0057	-20	c.167 others(39): Show c.1679-5691_1679-5672delGGGGCTAGTGCCTTGGGGAC	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	14/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12416546	GTGTGGCT others(13): Show GTGTGGCTGTGAAGGAACACC	G G	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0090 a0001c0004t0090	a0001c0004t0090g0102 a0001c0004t0090g0102	1	174	0.0057	-20	c.203 others(41): Show c.2037+13020_2037+13039delTGGCTGTGAAGGAACACCTG	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12476375	AAAAAAAA others(13): Show AAAAAAAAAATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG01496.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0056 a0001c0001t0013g0056	1	170	0.0059	-20	c.203 others(39): Show c.2038-1342_2038-1323delAAAAAAAATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12476381	AAAATATA others(13): Show AAAATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0012 a0001c0003t0012	a0001c0003t0012g0099 a0001c0003t0012g0099	1	125	0.0080	-20	c.203 others(39): Show c.2038-1336_2038-1317delAATATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12476393	TATATATA others(13): Show TATATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02886.hp2 HG02895.hp1 others(1): Show HG01261.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0005 a0001c0001 a0001c0002 a0002c0005	a0001c0001t0017 a0001c0002t0024 a0002c0005t0042 others(1): Show a0001c0001t0017 a0001c0002t0024 a0002c0005t0042 a0002c0005t0049	a0001c0001t0017g0025 a0001c0002t0024g0050 a0002c0005t0042g0072 others(1): Show a0001c0001t0017g0025 a0001c0002t0024g0050 a0002c0005t0042g0072 a0002c0005t0049g0092	4	172	0.0233	-20	c.203 others(39): Show c.2038-1306_2038-1287delCATATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12481513	GACACACA others(13): Show GACACACACACACACACACAC	G G	intron_variant intron_variant	MODIFIER	NA18950.hp1 NA18950.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0040 a0001c0001t0040	a0001c0001t0040g0015 a0001c0001t0040g0015	1	68	0.0147	-20	c.217 others(39): Show c.2178+3677_2178+3696delACACACACACACACACACAC	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	19/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12544233	AAGATTGA others(13): Show AAGATTGAAACTAACTTACCC	A A	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0104 a0001c0002t0104	a0001c0002t0104g0122 a0001c0002t0104g0122	1	172	0.0058	-20	c.231 others(41): Show c.2318+19399_2318+19418delAAACTAACTTACCCAGATTG	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	20/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX30_chr9_112745760_112879987	112847241	TGTATCCC others(13): Show TGTATCCCAGCCGTCCCGTGC	T T	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0021 a0001c0002t0021	a0001c0002t0021g0337 a0001c0002t0021g0337	1	336	0.0030	-20	c.101 others(39): Show c.1015-3600_1015-3581delTGCGTATCCCAGCCGTCCCG	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	6/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX31_chr8_100567889_100654665	100641623	CGCATATA others(13): Show CGCATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01167.hp1 HG01256.hp1 others(5): Show HG01109.hp2 HG01167.hp1 HG01256.hp1 HG02132.hp1 HG02572.hp2 HG02717.hp1 HG02922.hp2 NA21309.hp1	a0001 a0003 a0007 others(2): Show a0001 a0003 a0007 a0008 a0012	a0001c0001 a0003c0003 a0007c0007 others(2): Show a0001c0001 a0003c0003 a0007c0007 a0008c0008 a0012c0011	a0001c0001t0002 a0001c0001t0004 a0003c0003t0003 others(5): Show a0001c0001t0002 a0001c0001t0004 a0003c0003t0003 a0003c0003t0005 a0007c0007t0001 a0007c0007t0002 a0008c0008t0002 a0012c0011t0003	a0001c0001t0002g0057 a0001c0001t0004g0117 a0003c0003t0003g0291 others(5): Show a0001c0001t0002g0057 a0001c0001t0004g0117 a0003c0003t0003g0291 a0003c0003t0005g0108 a0007c0007t0001g0292 a0007c0007t0002g0107 a0008c0008t0002g0109 a0012c0011t0003g0200	8	143	0.0559	-20	c.142 others(37): Show c.142-5632_142-5613delATATATATATATATATATGC	SNX31	ENSG00000174226.9	transcript	ENST00000311812.7	protein_coding	2/13			chr8	TogoVar
SNX4_chr3_125441650_125525202	125519943	GGCCCGGC others(13): Show GGCCCGGCCCAGCCCAGCCCA	G G	intron_variant intron_variant	MODIFIER	NA18939.hp1 NA18939.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	358	0.0028	-20	c.141 others(33): Show c.141+69_141+88delTGGGCTGGGCTGGGCCGGGC	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	1/13			chr3	TogoVar
SNX6_chr14_34556093_34635148	34559020	CACACACA others(13): Show CACACACACACACACACACAT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01261.hp2 HG01346.hp2 HG02055.hp1 others(6): Show HG01261.hp2 HG01346.hp2 HG02055.hp1 HG02257.hp1 HG02258.hp2 HG02922.hp1 HG03017.hp2 HG03225.hp2 NA18940.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0007 a0001c0001t0009 a0001c0001t0003 a0001c0001t0007 a0001c0001t0009	a0001c0001t0003g0287 a0001c0001t0003g0301 a0001c0001t0003g0304 others(5): Show a0001c0001t0003g0287 a0001c0001t0003g0301 a0001c0001t0003g0304 a0001c0001t0007g0002 a0001c0001t0007g0315 a0001c0001t0007g0316 a0001c0001t0007g0317 a0001c0001t0009g0268	9	320	0.0281	-20	c.40 others(31): Show c.4082_*4101delATGTGTGTGTGTGTGTGTGT	SNX6	ENSG00000129515.20	transcript	ENST00000362031.10	protein_coding		2072		chr14	TogoVar
SNX7_chr1_98656721_98765500	98663252	GGTTTTTT others(13): Show GGTTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG00438.hp1 NA19010.hp2 HG00438.hp1 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0171 a0001c0001t0001g0008 a0001c0001t0001g0171	2	12	0.1667	-20	c.180 others(37): Show c.180+1342_180+1361delGTTTTTTTTTTTTTTTTTTT	SNX7	ENSG00000162627.17	transcript	ENST00000306121.8	protein_coding	1/8			chr1	TogoVar
SNX7_chr1_98656721_98765500	98763439	AAAAAATA others(13): Show AAAAAATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00733.hp1 HG01070.hp1 HG01074.hp1 others(9): Show HG00733.hp1 HG01070.hp1 HG01074.hp1 HG01433.hp1 HG02129.hp1 HG02300.hp1 HG03017.hp1 HG03492.hp1 NA18950.hp1 NA18952.hp2 NA18980.hp2 NA18999.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0221 a0001c0001t0001g0252 a0001c0001t0001g0267 others(9): Show a0001c0001t0001g0221 a0001c0001t0001g0252 a0001c0001t0001g0267 a0001c0001t0001g0277 a0001c0001t0001g0278 a0001c0001t0001g0280 a0001c0001t0001g0281 a0001c0001t0001g0282 a0001c0001t0001g0283 a0001c0001t0001g0314 a0001c0001t0001g0316 a0001c0001t0001g0321	12	362	0.0331	-20	c.33 others(31): Show c.3309_*3328delAAAAATATATATATATATAT	SNX7	ENSG00000162627.17	transcript	ENST00000306121.8	protein_coding		2940		chr1	TogoVar
SNX8_chr7_2246770_2319441	2317251	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01081.hp2 NA19240.hp2 NA20905.hp2 HG01081.hp2 NA19240.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0001 a0001c0001t0008	a0001c0001t0001g0210 a0001c0001t0008g0002 a0001c0001t0001g0210 a0001c0001t0008g0002	3	13	0.2308	-20	c.-28 others(31): Show c.-2850_-2831delAAAAAAAAAAAAAAAAAAAA	SNX8	ENSG00000106266.11	transcript	ENST00000222990.8	protein_coding		2811		chr7	TogoVar
SNX9_chr6_157818246_157950077	157827169	ATATAAAC others(13): Show ATATAAACATATATTATAGTT	A A	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0300 a0001c0001t0018g0300	1	300	0.0033	-20	c.12+ others(35): Show c.12+3728_12+3747delAACATATATTATAGTTTATA	SNX9	ENSG00000130340.17	transcript	ENST00000392185.8	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr6	TogoVar
SNX9_chr6_157818246_157950077	157827227	ATATAAAC others(13): Show ATATAAACATATATTATAGTT	A A	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0300 a0001c0001t0018g0300	1	300	0.0033	-20	c.12+ others(35): Show c.12+3786_12+3805delAACATATATTATAGTTTATA	SNX9	ENSG00000130340.17	transcript	ENST00000392185.8	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr6	TogoVar
SNX9_chr6_157818246_157950077	157910686	AGCACCTT others(13): Show AGCACCTTGTAAGTATGCAGG	A A	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG03579.hp1 HG06807.hp1 others(1): Show HG02559.hp2 HG03579.hp1 HG06807.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0013 a0001c0001t0018 a0001c0001t0011 a0001c0001t0013 a0001c0001t0018	a0001c0001t0011g0062 a0001c0001t0011g0279 a0001c0001t0013g0296 others(1): Show a0001c0001t0011g0062 a0001c0001t0011g0279 a0001c0001t0013g0296 a0001c0001t0018g0300	4	300	0.0133	-20	c.949 others(35): Show c.949+682_949+701delGCACCTTGTAAGTATGCAGG	SNX9	ENSG00000130340.17	transcript	ENST00000392185.8	protein_coding	9/17		INFO_REALIGN_3_PRIME	chr6	TogoVar
SOAT1_chr1_179288797_179363680	179351021	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00558.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0009 a0001c0002t0009	a0001c0002t0009g0210 a0001c0002t0009g0210	1	7	0.1429	-20	c.145 others(37): Show c.1451-276_1451-257delTTTTTTTTTTTTTTTTTTTT	SOAT1	ENSG00000057252.13	transcript	ENST00000367619.8	protein_coding	14/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
SOBP_chr6_107485117_107666306	107546708	GAAAAACA others(13): Show GAAAAACAAAACAAACAAACA	G G	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0227 a0001c0001t0005g0227	1	294	0.0034	-20	c.573 others(39): Show c.573+13106_573+13125delAAACAAACAAACAAAAAACA	SOBP	ENSG00000112320.12	transcript	ENST00000317357.10	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr6	TogoVar
SOBP_chr6_107485117_107666306	107553298	TTTTATTT others(13): Show TTTTATTTATTTATTTATTTA	T T	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02257.hp2 HG02970.hp1 others(2): Show HG01081.hp2 HG02257.hp2 HG02970.hp1 HG03130.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0025	a0001c0001t0001g0220 a0001c0001t0003g0265 a0001c0001t0005g0263 others(2): Show a0001c0001t0001g0220 a0001c0001t0003g0265 a0001c0001t0005g0263 a0001c0001t0005g0264 a0001c0001t0025g0211	5	98	0.0510	-20	c.573 others(39): Show c.573+19716_573+19735delATTTATTTATTTATTTATTT	SOBP	ENSG00000112320.12	transcript	ENST00000317357.10	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr6	TogoVar

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