Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZXDC_chr3_126432601_126480891	126476105	AGGGCGGG others(13): Show AGGGCGGGGCGCGGGGTCGGG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00140.hp2 HG00323.hp2 others(54): Show HG00099.hp1 HG00140.hp2 HG00323.hp2 HG00621.hp1 HG00639.hp2 HG00738.hp2 HG01070.hp1 HG01071.hp1 HG01081.hp1 HG01081.hp2 HG01123.hp2 HG01175.hp1 HG01258.hp1 HG01361.hp1 HG01433.hp2 HG01928.hp1 HG01928.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp2 HG01978.hp2 HG02004.hp1 HG02015.hp2 HG02155.hp2 HG02273.hp1 HG02273.hp2 HG02602.hp2 HG02735.hp2 HG02896.hp1 HG03017.hp1 HG03098.hp1 HG03225.hp2 HG03239.hp1 HG03490.hp1 HG03491.hp1 HG03516.hp2 HG03579.hp1 HG03942.hp1 HG04204.hp1 NA18522.hp2 NA18906.hp2 NA18942.hp2 NA18944.hp2 NA18951.hp1 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18987.hp1 NA18994.hp2 NA18998.hp2 NA19001.hp2 NA19009.hp2 NA19010.hp2 NA19068.hp1 NA19068.hp2 NA19088.hp2 NA20752.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0002c0003 others(2): Show a0001c0001 a0001c0002 a0002c0003 a0002c0011 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 a0001c0002t0001 a0001c0002t0002 a0002c0003t0001 a0002c0011t0001 a0004c0006t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0008 others(37): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0058 a0001c0001t0001g0156 a0001c0001t0001g0158 a0001c0001t0001g0165 a0001c0001t0001g0168 a0001c0001t0001g0170 a0001c0001t0001g0172 a0001c0001t0001g0176 a0001c0001t0001g0178 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0211 a0001c0001t0002g0017 a0001c0001t0002g0177 a0001c0001t0004g0181 a0001c0001t0008g0007 a0001c0002t0001g0036 a0001c0002t0001g0106 a0001c0002t0001g0108 a0001c0002t0001g0109 a0001c0002t0001g0117 a0001c0002t0002g0107 a0002c0003t0001g0021 a0002c0003t0001g0034 a0002c0003t0001g0102 a0002c0003t0001g0103 a0002c0003t0001g0104 a0002c0003t0001g0111 a0002c0003t0001g0112 a0002c0003t0001g0114 a0002c0011t0001g0035 a0004c0006t0001g0012	57	390	0.1462	-20	c.-26 others(29): Show c.-260_-241delCCCGACCCCGCGCCCCGCCC		ZXDC	ENSG00000070476.15	transcript	ENST00000389709.8	protein_coding					215		chr3	TogoVar
	ZXDC_chr3_126432601_126480891	126476212	GGCGCGGG others(13): Show GGCGCGGGGTCGGGGGGCGGA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02615.hp2 HG02717.hp2 HG02976.hp1 HG02615.hp2 HG02717.hp2 HG02976.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0036 a0001c0002t0001g0042 a0001c0002t0001g0036 a0001c0002t0001g0042	3	390	0.0077	-20	c.-36 others(29): Show c.-367_-348delTCCGCCCCCCGACCCCGCGC		ZXDC	ENSG00000070476.15	transcript	ENST00000389709.8	protein_coding					322		chr3	TogoVar
	ZYG11A_chr1_52837760_52899998	52846310	TTATATAT others(13): Show TTATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	NA19087.hp2 NA19087.hp2	a0016 a0016	a0016c0012 a0016c0012	a0016c0012t0001 a0016c0012t0001	a0016c0012t0001g0157 a0016c0012t0001g0157	1	290	0.0035	-20	c.90+ others(35): Show c.90+3375_90+3394delATATATATATATATATATAT		ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	1/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52797255	TATATTTA others(13): Show TATATTTATATTATATATAAA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02630.hp1 HG02818.hp1 others(1): Show HG01884.hp2 HG02630.hp1 HG02818.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0066 a0001c0001t0067 a0001c0001t0029 a0001c0001t0066 a0001c0001t0067	a0001c0001t0029g0350 a0001c0001t0029g0351 a0001c0001t0066g0349 others(1): Show a0001c0001t0029g0350 a0001c0001t0029g0351 a0001c0001t0066g0349 a0001c0001t0067g0352	4	352	0.0114	-20	c.148 others(37): Show c.1485+496_1485+515delTTATATTATATATAAAATAT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	8/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817809	ATATATAT others(13): Show ATATATATTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0059 a0001c0001t0059	a0001c0001t0059g0151 a0001c0001t0059g0151	1	352	0.0028	-20	c.204 others(39): Show c.2044+1182_2044+1201delATATATTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817815	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01257.hp1 HG01346.hp2 others(6): Show HG01255.hp2 HG01257.hp1 HG01346.hp2 HG02109.hp2 HG02135.hp1 HG02738.hp2 HG03017.hp2 NA18612.hp1 NA18970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0019 a0001c0001t0032 a0001c0001t0001 a0001c0001t0019 a0001c0001t0032	a0001c0001t0001g0060 a0001c0001t0001g0069 a0001c0001t0001g0084 others(6): Show a0001c0001t0001g0060 a0001c0001t0001g0069 a0001c0001t0001g0084 a0001c0001t0001g0120 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0019g0087 a0001c0001t0019g0128 a0001c0001t0032g0099	9	352	0.0256	-20	c.204 others(39): Show c.2044+1207_2044+1226delTTTTTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZZEF1_chr17_3999445_4148030	4087783	AACACACA others(13): Show AACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00408.hp1 HG00558.hp1 others(112): Show HG00140.hp1 HG00408.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00673.hp2 HG00735.hp1 HG00735.hp2 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp2 HG01081.hp2 HG01099.hp2 HG01106.hp1 HG01109.hp2 HG01123.hp2 HG01168.hp2 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01256.hp2 HG01258.hp2 HG01261.hp1 HG01346.hp2 HG01361.hp1 HG01496.hp1 HG01496.hp2 HG01891.hp2 HG01928.hp2 HG01934.hp1 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01975.hp2 HG01993.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02080.hp1 HG02109.hp1 HG02129.hp2 HG02135.hp2 HG02148.hp2 HG02165.hp1 HG02280.hp1 HG02486.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02647.hp2 HG02683.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp2 HG02738.hp2 HG02886.hp1 HG02976.hp2 HG03098.hp2 HG03130.hp2 HG03225.hp1 HG03239.hp2 HG03486.hp2 HG03492.hp2 HG03516.hp1 HG03654.hp2 HG03710.hp2 HG03942.hp1 HG04115.hp1 HG04228.hp1 HG04228.hp2 NA18939.hp1 NA18940.hp2 NA18941.hp2 NA18942.hp2 NA18944.hp1 NA18946.hp2 NA18951.hp1 NA18955.hp2 NA18957.hp1 NA18960.hp1 NA18962.hp1 NA18963.hp1 NA18964.hp2 NA18967.hp2 NA18968.hp1 NA18969.hp1 NA18970.hp2 NA18971.hp2 NA18974.hp2 NA18977.hp2 NA18978.hp2 NA18979.hp1 NA18982.hp1 NA18983.hp1 NA18986.hp2 NA18994.hp2 NA18998.hp1 NA19007.hp2 NA19010.hp2 NA19011.hp1 NA19057.hp2 NA19060.hp2 NA19064.hp1 NA19065.hp1 NA19066.hp1 NA19074.hp1 NA19079.hp2 NA19081.hp1 NA19086.hp2 NA19087.hp1 NA19089.hp2 NA19090.hp2 NA20805.hp2	a0001 a0008 a0009 others(9): Show a0001 a0008 a0009 a0012 a0017 a0021 a0022 a0024 a0026 a0027 a0028 a0033	a0001c0001 a0001c0016 a0001c0049 others(14): Show a0001c0001 a0001c0016 a0001c0049 a0001c0050 a0001c0051 a0001c0057 a0008c0007 a0009c0010 a0012c0013 a0017c0023 a0021c0053 a0022c0056 a0024c0047 a0026c0048 a0027c0055 a0028c0046 a0033c0052	a0001c0001t0001 a0001c0001t0003 a0001c0001t0023 others(20): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0023 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0016t0001 a0001c0049t0001 a0001c0050t0003 a0001c0051t0001 a0001c0057t0024 a0008c0007t0002 a0008c0007t0008 a0009c0010t0001 a0012c0013t0003 a0017c0023t0001 a0021c0053t0001 a0022c0056t0001 a0024c0047t0003 a0026c0048t0001 a0027c0055t0001 a0028c0046t0001 a0033c0052t0003	a0001c0001t0001g0023 a0001c0001t0001g0025 a0001c0001t0001g0029 others(112): Show a0001c0001t0001g0023 a0001c0001t0001g0025 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0056 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0081 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0087 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0123 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0141 a0001c0001t0001g0142 a0001c0001t0003g0106 a0001c0001t0003g0108 a0001c0001t0003g0109 a0001c0001t0023g0115 a0001c0001t0025g0082 a0001c0001t0026g0047 a0001c0001t0027g0055 a0001c0016t0001g0046 a0001c0016t0001g0057 a0001c0016t0001g0134 a0001c0049t0001g0080 a0001c0050t0003g0119 a0001c0051t0001g0060 a0001c0057t0024g0024 a0008c0007t0002g0122 a0008c0007t0002g0124 a0008c0007t0008g0093 a0008c0007t0008g0110 a0008c0007t0008g0120 a0008c0007t0008g0121 a0008c0007t0008g0125 a0008c0007t0008g0127 a0009c0010t0001g0026 a0009c0010t0001g0034 a0009c0010t0001g0035 a0009c0010t0001g0036 a0009c0010t0001g0037 a0009c0010t0001g0139 a0012c0013t0003g0071 a0012c0013t0003g0085 a0012c0013t0003g0086 a0012c0013t0003g0088 a0017c0023t0001g0126 a0017c0023t0001g0132 a0021c0053t0001g0069 a0022c0056t0001g0033 a0024c0047t0003g0038 a0026c0048t0001g0075 a0027c0055t0001g0054 a0028c0046t0001g0140 a0033c0052t0003g0097	115	296	0.3885	-20	c.224 others(37): Show c.2242-269_2242-250delGTGTGTGTGTGTGTGTGTGT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	13/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4112033	AATATATA others(13): Show AATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01243.hp2 HG03209.hp1 others(4): Show HG01081.hp2 HG01243.hp2 HG03209.hp1 NA18951.hp1 NA18968.hp1 NA18998.hp1 NA19011.hp1	a0001 a0004 a0005 a0001 a0004 a0005	a0001c0001 a0004c0020 a0005c0011 a0001c0001 a0004c0020 a0005c0011	a0001c0001t0001 a0001c0001t0003 a0004c0020t0007 others(1): Show a0001c0001t0001 a0001c0001t0003 a0004c0020t0007 a0005c0011t0003	a0001c0001t0001g0043 a0001c0001t0001g0130 a0001c0001t0003g0106 others(4): Show a0001c0001t0001g0043 a0001c0001t0001g0130 a0001c0001t0003g0106 a0001c0001t0003g0108 a0001c0001t0003g0109 a0004c0020t0007g0019 a0005c0011t0003g0251	7	296	0.0237	-20	c.106 others(37): Show c.1066+556_1066+575delATATATATATATATATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54						chr17	TogoVar
	ZZZ3_chr1_77557416_77687658	77620484	TGGAAGGA others(13): Show TGGAAGGAAGGAAGGAAGGAA	T T	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01106.hp1 HG01891.hp1 others(2): Show HG00733.hp2 HG01106.hp1 HG01891.hp1 HG02280.hp1 NA20300.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0005 a0001c0001 a0004c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0004c0005t0001	a0001c0001t0001g0330 a0001c0001t0003g0343 a0001c0001t0004g0012 others(2): Show a0001c0001t0001g0330 a0001c0001t0003g0343 a0001c0001t0004g0012 a0004c0005t0001g0118 a0004c0005t0001g0119	5	348	0.0144	-20	c.150 others(41): Show c.1505+11346_1505+11365delTTCCTTCCTTCCTTCCTTCC		ZZZ3	ENSG00000036549.13	transcript	ENST00000370801.8	protein_coding	5/14						chr1	TogoVar