Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

Chr

Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Samplehapid

No_hapid

No_samplehapid

Start

End

Minac

Maxac

Minlen

Maxlen

Sort By

Order by

regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ZSWIM6_chr5_61327258_61551172	61355431	AACACACA others(17): Show AACACACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01934.hp1 HG02300.hp2 HG01081.hp1 HG01934.hp1 HG02300.hp2	a0004 a0012 a0004 a0012	a0004c0006 a0012c0032 a0004c0006 a0012c0032	a0004c0006t0001 a0012c0032t0001 a0004c0006t0001 a0012c0032t0001	a0004c0006t0001g0057 a0004c0006t0001g0059 a0012c0032t0001g0012 a0004c0006t0001g0057 a0004c0006t0001g0059 a0012c0032t0001g0012	3	19	0.1579	-24	c.676 others(43): Show c.676+22526_676+22549delACACACACACACACACACACACAC	ZSWIM6	ENSG00000130449.6	transcript	ENST00000252744.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr5	TogoVar
ZSWIM6_chr5_61327258_61551172	61505601	ACCTTCCT others(17): Show ACCTTCCTTCCTTCCTTCCTTCCTT	A A	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01192.hp1 HG01993.hp2 others(1): Show HG01070.hp1 HG01192.hp1 HG01993.hp2 NA20129.hp2	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0001 a0004c0006t0001	a0004c0006t0001g0010 a0004c0006t0001g0011 a0004c0006t0001g0060 others(1): Show a0004c0006t0001g0010 a0004c0006t0001g0011 a0004c0006t0001g0060 a0004c0006t0001g0061	4	47	0.0851	-24	c.133 others(45): Show c.1333+11241_1333+11264delCTTCCTTCCTTCCTTCCTTCCTTC	ZSWIM6	ENSG00000130449.6	transcript	ENST00000252744.6	protein_coding	4/13		INFO_REALIGN_3_PRIME	chr5	TogoVar
ZSWIM6_chr5_61327258_61551172	61505660	TTCCTTCC others(17): Show TTCCTTCCTTCCTTCTTTCCTTGCC	T T	intron_variant intron_variant	MODIFIER	NA19091.hp2 NA19091.hp2	a0005 a0005	a0005c0017 a0005c0017	a0005c0017t0003 a0005c0017t0003	a0005c0017t0003g0246 a0005c0017t0003g0246	1	268	0.0037	-24	c.133 others(45): Show c.1333+11254_1333+11277delTTCCTTCCTTCTTTCCTTGCCTCC	ZSWIM6	ENSG00000130449.6	transcript	ENST00000252744.6	protein_coding	4/13		INFO_REALIGN_3_PRIME	chr5	TogoVar
ZSWIM6_chr5_61327258_61551172	61505664	TTCCTTCC others(17): Show TTCCTTCCTTCTTTCCTTGCCTCCC	T T	intron_variant intron_variant	MODIFIER	HG02630.hp1 NA18522.hp2 NA20300.hp2 others(1): Show HG02630.hp1 NA18522.hp2 NA20300.hp2 NA20805.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0114 a0002c0002t0001g0122 a0002c0002t0001g0211 others(1): Show a0002c0002t0001g0114 a0002c0002t0001g0122 a0002c0002t0001g0211 a0002c0002t0001g0214	4	261	0.0153	-24	c.133 others(45): Show c.1333+11258_1333+11281delTTCCTTCTTTCCTTGCCTCCCTCC	ZSWIM6	ENSG00000130449.6	transcript	ENST00000252744.6	protein_coding	4/13		INFO_REALIGN_3_PRIME	chr5	TogoVar
ZSWIM6_chr5_61327258_61551172	61505668	TTCCTTCT others(17): Show TTCCTTCTTTCCTTGCCTCCCTCCC	T T	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0009 a0002c0002t0009	a0002c0002t0009g0017 a0002c0002t0009g0017	1	234	0.0043	-24	c.133 others(45): Show c.1333+11262_1333+11285delTTCTTTCCTTGCCTCCCTCCCTCC	ZSWIM6	ENSG00000130449.6	transcript	ENST00000252744.6	protein_coding	4/13		INFO_REALIGN_3_PRIME	chr5	TogoVar
ZSWIM7_chr17_15971560_16004704	15976090	AAAAAAAA others(17): Show AAAAAAAAAATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0034 a0001c0001t0004g0034	1	335	0.0030	-24	c.19 others(35): Show c.1933_*1956delATATATATATATATATTTTTTTTT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		469		chr17	TogoVar
ZYG11A_chr1_52837760_52899998	52846308	TTTTATAT others(17): Show TTTTATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02723.hp2 HG03195.hp1 others(1): Show HG02280.hp1 HG02723.hp2 HG03195.hp1 HG03471.hp1	a0001 a0012 a0001 a0012	a0001c0001 a0012c0012 a0001c0001 a0012c0012	a0001c0001t0001 a0012c0012t0002 a0001c0001t0001 a0012c0012t0002	a0001c0001t0001g0282 a0001c0001t0001g0283 a0001c0001t0001g0284 others(1): Show a0001c0001t0001g0282 a0001c0001t0001g0283 a0001c0001t0001g0284 a0012c0012t0002g0078	4	177	0.0226	-24	c.90+ others(39): Show c.90+3337_90+3360delTTATATATATATATATATATATAT	ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52780994	ATTAGCCA others(17): Show ATTAGCCAAATGTGGTGGTGCACGC	A A	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01069.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0152 a0001c0001t0011g0152	1	350	0.0029	-24	c.109 others(43): Show c.1092+1002_1092+1025delTTAGCCAAATGTGGTGGTGCACGC	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	4/13			chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52803111	TATATATA others(17): Show TATATATACACACATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG01978.hp1 NA18949.hp1 NA19070.hp1 others(1): Show HG01978.hp1 NA18949.hp1 NA19070.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0026 a0001c0001t0069 a0001c0001t0013 a0001c0001t0026 a0001c0001t0069	a0001c0001t0013g0081 a0001c0001t0013g0082 a0001c0001t0026g0129 others(1): Show a0001c0001t0013g0081 a0001c0001t0013g0082 a0001c0001t0026g0129 a0001c0001t0069g0263	4	320	0.0125	-24	c.169 others(41): Show c.1695+974_1695+997delTATATACACACATATATATATACA	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	10/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52803133	TACACACA others(17): Show TACACACATATATATATATATACAC	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0133 a0001c0001t0001g0133	1	347	0.0029	-24	c.169 others(42): Show c.1695+996_1695+1019delCACACATATATATATATATACACA	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	10/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817795	ATATATAT others(17): Show ATATATATATATATATATATATTTT	A A	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01167.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0101 a0001c0002t0003g0101	1	337	0.0030	-24	c.204 others(43): Show c.2044+1168_2044+1191delATATATATATATATATATATTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817797	ATATATAT others(17): Show ATATATATATATATATATATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0053 a0001c0001t0053	a0001c0001t0053g0004 a0001c0001t0053g0004	1	303	0.0033	-24	c.204 others(43): Show c.2044+1170_2044+1193delATATATATATATATATATTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817799	ATATATAT others(17): Show ATATATATATATATATATTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03471.hp1 HG03098.hp2 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0061 a0001c0001t0025 a0001c0001t0061	a0001c0001t0025g0189 a0001c0001t0061g0160 a0001c0001t0025g0189 a0001c0001t0061g0160	2	325	0.0062	-24	c.204 others(43): Show c.2044+1172_2044+1195delATATATATATATATATTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817809	ATATATAT others(17): Show ATATATATTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02717.hp1 HG03098.hp1 others(3): Show HG02559.hp1 HG02717.hp1 HG03098.hp1 HG03209.hp2 HG03486.hp1 NA18963.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0071 a0001c0001t0002 a0001c0001t0005 a0001c0001t0071	a0001c0001t0002g0331 a0001c0001t0005g0214 a0001c0001t0005g0216 others(3): Show a0001c0001t0002g0331 a0001c0001t0005g0214 a0001c0001t0005g0216 a0001c0001t0005g0217 a0001c0001t0005g0222 a0001c0001t0071g0219	6	336	0.0179	-24	c.204 others(43): Show c.2044+1182_2044+1205delATATATTTTTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817811	ATATATTT others(17): Show ATATATTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02886.hp2 HG03516.hp1 HG02572.hp2 HG02886.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0010 a0001c0001t0005 a0001c0001t0010	a0001c0001t0005g0215 a0001c0001t0005g0220 a0001c0001t0010g0264 a0001c0001t0005g0215 a0001c0001t0005g0220 a0001c0001t0010g0264	3	337	0.0089	-24	c.204 others(43): Show c.2044+1184_2044+1207delATATTTTTTTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817813	ATATTTTT others(17): Show ATATTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02055.hp1 HG02572.hp1 others(2): Show HG01884.hp1 HG02055.hp1 HG02572.hp1 HG02896.hp1 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0002 a0001c0001t0010 a0001c0001t0045 others(1): Show a0001c0001t0002 a0001c0001t0010 a0001c0001t0045 a0001c0005t0005	a0001c0001t0002g0335 a0001c0001t0010g0266 a0001c0001t0010g0267 others(2): Show a0001c0001t0002g0335 a0001c0001t0010g0266 a0001c0001t0010g0267 a0001c0001t0045g0291 a0001c0005t0005g0345	5	335	0.0149	-24	c.204 others(43): Show c.2044+1186_2044+1209delATTTTTTTTTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817815	ATTTTTTT others(17): Show ATTTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02698.hp1 HG02698.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0067 a0001c0001t0001g0067	1	279	0.0036	-24	c.204 others(43): Show c.2044+1203_2044+1226delTTTTTTTTTTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZZEF1_chr17_3999445_4148030	4036801	ACACACAC others(17): Show ACACACACACACACACACTCTCTCT	A A	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01243.hp2 HG01884.hp1 others(27): Show HG01099.hp1 HG01243.hp2 HG01884.hp1 HG01891.hp1 HG02055.hp2 HG02258.hp1 HG02451.hp1 HG02486.hp1 HG02622.hp1 HG02647.hp1 HG02818.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp2 HG03453.hp2 HG03486.hp1 HG03540.hp1 HG03579.hp1 NA18522.hp1 NA19030.hp2 NA19240.hp1 NA20129.hp1 NA20300.hp2	a0004 a0007 a0013 a0004 a0007 a0013	a0004c0005 a0004c0020 a0004c0058 others(3): Show a0004c0005 a0004c0020 a0004c0058 a0004c0064 a0007c0006 a0013c0018	a0004c0005t0006 a0004c0005t0007 a0004c0005t0011 others(7): Show a0004c0005t0006 a0004c0005t0007 a0004c0005t0011 a0004c0005t0020 a0004c0020t0007 a0004c0058t0011 a0004c0064t0007 a0007c0006t0005 a0013c0018t0016 a0013c0018t0018	a0004c0005t0006g0005 a0004c0005t0006g0006 a0004c0005t0006g0007 others(27): Show a0004c0005t0006g0005 a0004c0005t0006g0006 a0004c0005t0006g0007 a0004c0005t0006g0008 a0004c0005t0006g0009 a0004c0005t0006g0011 a0004c0005t0006g0012 a0004c0005t0006g0013 a0004c0005t0007g0016 a0004c0005t0007g0018 a0004c0005t0011g0248 a0004c0005t0011g0249 a0004c0005t0020g0010 a0004c0020t0007g0019 a0004c0020t0007g0020 a0004c0020t0007g0022 a0004c0058t0011g0247 a0004c0064t0007g0021 a0007c0006t0005g0195 a0007c0006t0005g0196 a0007c0006t0005g0197 a0007c0006t0005g0198 a0007c0006t0005g0199 a0007c0006t0005g0200 a0007c0006t0005g0201 a0007c0006t0005g0202 a0007c0006t0005g0203 a0013c0018t0016g0245 a0013c0018t0016g0246 a0013c0018t0018g0017	30	293	0.1024	-24	c.630 others(43): Show c.6307-2533_6307-2510delAGAGAGAGTGTGTGTGTGTGTGTG	ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	39/54			chr17	TogoVar
ZZEF1_chr17_3999445_4148030	4112033	AATATATA others(17): Show AATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01884.hp1 HG01884.hp2 others(2): Show HG00558.hp1 HG01884.hp1 HG01884.hp2 HG03098.hp1 NA18994.hp2	a0001 a0004 a0005 others(1): Show a0001 a0004 a0005 a0010	a0001c0001 a0004c0064 a0005c0055 others(1): Show a0001c0001 a0004c0064 a0005c0055 a0010c0017	a0001c0001t0001 a0004c0064t0007 a0005c0055t0003 others(1): Show a0001c0001t0001 a0004c0064t0007 a0005c0055t0003 a0010c0017t0009	a0001c0001t0001g0088 a0001c0001t0001g0129 a0004c0064t0007g0021 others(2): Show a0001c0001t0001g0088 a0001c0001t0001g0129 a0004c0064t0007g0021 a0005c0055t0003g0218 a0010c0017t0009g0210	5	41	0.1220	-24	c.106 others(41): Show c.1066+552_1066+575delATATATATATATATATATATATAT	ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54			chr17	TogoVar
ZZEF1_chr17_3999445_4148030	4123268	CATATATA others(17): Show CATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0002 a0002	a0002c0039 a0002c0039	a0002c0039t0003 a0002c0039t0003	a0002c0039t0003g0033 a0002c0039t0003g0033	1	37	0.0270	-24	c.499 others(39): Show c.499+615_499+638delATATATATATATATATATATATAT	ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	2/54			chr17	TogoVar

Search by Variant

Search

Search Results