regionname | pos | ref | alt | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CHRM2_chr7_136863652_137025213 | 137000194 | CTTT | C | intron_variant | MODIFIER | HG01168.hp2 HG01261.hp1 HG01358.hp2 others(3): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0056a0001c0001t0057others(2): Show | a0001c0001t0002g0146a0001c0001t0002g0152a0001c0001t0056g0216others(3): Show | 6 | 320 | 0.0188 | -3 | c.-47 others(20): Show |
CHRM2 | ENSG00000181072.12 | transcript | ENST00000680005.1 | protein_coding | 3/3 | INFO_REALIGN_3_PRIME | chr7 | TogoVar | |||||
CHRM2_chr7_136863652_137025213 | 137000729 | CCTT | C | intron_variant | MODIFIER | HG01243.hp2 HG02818.hp1 HG03453.hp1 others(1): Show |
a0001a0004 | a0001c0001a0001c0003a0004c0009 | a0001c0001t0054a0001c0003t0023a0001c0003t0028others(1): Show | a0001c0001t0054g0252a0001c0003t0023g0218a0001c0003t0028g0064others(1): Show | 4 | 320 | 0.0125 | -3 | c.-47 others(20): Show |
CHRM2 | ENSG00000181072.12 | transcript | ENST00000680005.1 | protein_coding | 3/3 | chr7 | TogoVar | ||||||
CHRM2_chr7_136863652_137025213 | 137023782 | AGAT | A | downstream_gene_variant | MODIFIER | HG00099.hp2 HG00733.hp2 HG00735.hp2 others(11): Show |
a0001 | a0001c0001 | a0001c0001t0007a0001c0001t0008a0001c0001t0013others(6): Show | a0001c0001t0007g0141a0001c0001t0007g0300a0001c0001t0007g0305others(11): Show | 14 | 320 | 0.0438 | -3 | c.*75 others(14): Show |
CHRM2 | ENSG00000181072.12 | transcript | ENST00000680005.1 | protein_coding | 3570 | chr7 | TogoVar | ||||||
CHRM3_chr1_239381568_239920450 | 239404728 | ATAT | A | intron_variant | MODIFIER | HG00140.hp1 HG01106.hp1 HG01243.hp2 others(9): Show |
a0001a0004 | a0001c0001a0004c0003 | a0001c0001t0001a0001c0001t0004a0001c0001t0013others(9): Show | a0001c0001t0001g0083a0001c0001t0004g0035a0001c0001t0013g0078others(9): Show | 12 | 116 | 0.1035 | -3 | c.-52 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 1/6 | chr1 | TogoVar | ||||||
CHRM3_chr1_239381568_239920450 | 239411720 | CAAA | C | intron_variant | MODIFIER | HG01106.hp1 HG01106.hp2 HG01243.hp2 others(16): Show |
a0001a0004 | a0001c0001a0004c0003 | a0001c0001t0004a0001c0001t0005a0001c0001t0011others(14): Show | a0001c0001t0004g0035a0001c0001t0005g0073a0001c0001t0011g0071others(16): Show | 19 | 116 | 0.1638 | -3 | c.-52 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 1/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239419362 | CTTT | C | intron_variant | MODIFIER | HG00738.hp1 HG02040.hp1 HG02083.hp2 others(9): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0005a0001c0001t0012others(8): Show | a0001c0001t0002g0107a0001c0001t0005g0073a0001c0001t0012g0049others(9): Show | 12 | 116 | 0.1035 | -3 | c.-52 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 1/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239480543 | ATTT | A | intron_variant | MODIFIER | HG00140.hp2 HG01255.hp2 HG01346.hp2 others(8): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(5): Show | a0001c0001t0001g0052a0001c0001t0001g0105a0001c0001t0001g0109others(8): Show | 11 | 116 | 0.0948 | -3 | c.-52 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 1/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239483889 | CCTT | C | intron_variant | MODIFIER | HG00438.hp1 HG00609.hp2 HG01109.hp1 others(10): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(7): Show | a0001c0001t0001g0005a0001c0001t0002g0037a0001c0001t0002g0051others(10): Show | 13 | 116 | 0.1121 | -3 | c.-52 others(22): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 1/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239488714 | CAAA | C | intron_variant | MODIFIER | HG00438.hp2 HG02109.hp2 HG02738.hp1 others(7): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0008others(5): Show | a0001c0001t0001g0056a0001c0001t0001g0098a0001c0001t0002g0059others(7): Show | 10 | 116 | 0.0862 | -3 | c.-52 others(22): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 1/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239500711 | AAAC | A | intron_variant | MODIFIER | HG00140.hp2 HG01106.hp1 HG01109.hp1 others(14): Show |
a0001a0004 | a0001c0001a0004c0003 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(9): Show | a0001c0001t0001g0052a0001c0001t0001g0105a0001c0001t0001g0109others(14): Show | 17 | 116 | 0.1466 | -3 | c.-42 others(22): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 2/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239505259 | GGAT | G | intron_variant | MODIFIER | HG00140.hp1 HG00140.hp2 HG00438.hp2 others(70): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(37): Show | a0001c0001t0001g0002a0001c0001t0001g0009a0001c0001t0001g0010others(70): Show | 73 | 116 | 0.6293 | -3 | c.-42 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 2/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239510903 | ACCT | A | intron_variant | MODIFIER | HG00140.hp1 HG00639.hp2 HG00738.hp1 others(18): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(12): Show | a0001c0001t0001g0009a0001c0001t0001g0010a0001c0001t0001g0054others(18): Show | 21 | 116 | 0.1810 | -3 | c.-42 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 2/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239529609 | CAAA | C | intron_variant | MODIFIER | HG01106.hp1 HG01109.hp1 HG02109.hp1 others(10): Show |
a0001a0004 | a0001c0001a0001c0005a0004c0003 | a0001c0001t0002a0001c0001t0003a0001c0001t0004others(10): Show | a0001c0001t0002g0074a0001c0001t0003g0039a0001c0001t0004g0035others(10): Show | 13 | 116 | 0.1121 | -3 | c.-42 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 2/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239533356 | ACTT | A | intron_variant | MODIFIER | HG01106.hp1 HG01109.hp1 HG02615.hp2 others(2): Show |
a0001a0004 | a0001c0001a0004c0003 | a0001c0001t0002a0001c0001t0004a0001c0001t0020others(2): Show | a0001c0001t0002g0074a0001c0001t0004g0035a0001c0001t0020g0036others(2): Show | 5 | 116 | 0.0431 | -3 | c.-42 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 2/6 | chr1 | TogoVar | ||||||
CHRM3_chr1_239381568_239920450 | 239533748 | AAAC | A | intron_variant | MODIFIER | HG00438.hp1 HG00609.hp2 HG01256.hp2 others(9): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(8): Show | a0001c0001t0001g0005a0001c0001t0002g0051a0001c0001t0003g0092others(9): Show | 12 | 116 | 0.1035 | -3 | c.-42 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 2/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239552627 | ATAT | A | intron_variant | MODIFIER | HG00609.hp2 HG00639.hp2 HG00738.hp1 others(36): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(23): Show | a0001c0001t0001g0002a0001c0001t0001g0005a0001c0001t0001g0010others(36): Show | 39 | 116 | 0.3362 | -3 | c.-31 others(22): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 3/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239562561 | AGAT | A | intron_variant | MODIFIER | HG00438.hp2 HG00609.hp1 HG00639.hp2 others(16): Show |
a0001a0002a0004 | a0001c0001a0002c0002a0004c0003 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(10): Show | a0001c0001t0001g0002a0001c0001t0001g0010a0001c0001t0001g0058others(16): Show | 19 | 116 | 0.1638 | -3 | c.-31 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 3/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239562577 | GATT | G | intron_variant | MODIFIER | HG00140.hp2 HG00438.hp1 HG00639.hp1 others(32): Show |
a0001a0003 | a0001c0001a0003c0004 | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(24): Show | a0001c0001t0001g0013a0001c0001t0001g0105a0001c0001t0001g0109others(32): Show | 35 | 116 | 0.3017 | -3 | c.-31 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 3/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239610190 | CAAA | C | intron_variant | MODIFIER | HG02109.hp1 HG02615.hp1 HG03098.hp2 others(4): Show |
a0001 | a0001c0001 | a0001c0001t0013a0001c0001t0014a0001c0001t0016others(3): Show | a0001c0001t0013g0085a0001c0001t0014g0075a0001c0001t0016g0101others(4): Show | 7 | 116 | 0.0603 | -3 | c.-31 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 3/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239637517 | CTTT | C | intron_variant | MODIFIER | HG00140.hp2 HG00438.hp1 HG00609.hp1 others(29): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(21): Show | a0001c0001t0001g0002a0001c0001t0001g0005a0001c0001t0001g0010others(29): Show | 32 | 116 | 0.2759 | -3 | c.-25 others(22): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 4/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239651985 | GTTT | G | intron_variant | MODIFIER | HG00438.hp2 HG00639.hp1 HG01109.hp2 others(32): Show |
a0001a0003a0004 | a0001c0001a0001c0005a0003c0004others(1): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(22): Show | a0001c0001t0001g0013a0001c0001t0001g0052a0001c0001t0001g0056others(32): Show | 35 | 116 | 0.3017 | -3 | c.-25 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 4/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239662893 | CTCT | C | intron_variant | MODIFIER | HG00140.hp1 HG00609.hp1 HG00738.hp1 others(7): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(5): Show | a0001c0001t0001g0009a0001c0001t0001g0058a0001c0001t0002g0061others(7): Show | 10 | 116 | 0.0862 | -3 | c.-24 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 4/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239738622 | AAAT | A | intron_variant | MODIFIER | HG01256.hp2 HG01258.hp1 HG01433.hp2 others(3): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0005a0001c0001t0007others(2): Show | a0001c0001t0002g0037a0001c0001t0002g0051a0001c0001t0005g0077others(3): Show | 6 | 116 | 0.0517 | -3 | c.-14 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 5/6 | chr1 | TogoVar | ||||||
CHRM3_chr1_239381568_239920450 | 239794387 | GTTT | G | intron_variant | MODIFIER | HG01256.hp2 HG01258.hp1 HG02040.hp1 others(7): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(5): Show | a0001c0001t0001g0009a0001c0001t0001g0105a0001c0001t0002g0037others(7): Show | 10 | 116 | 0.0862 | -3 | c.-14 others(24): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 5/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239843447 | CTTT | C | intron_variant | MODIFIER | HG00438.hp1 HG00438.hp2 HG00609.hp2 others(30): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(16): Show | a0001c0001t0001g0005a0001c0001t0001g0052a0001c0001t0001g0054others(30): Show | 33 | 116 | 0.2845 | -3 | c.-20 others(22): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 6/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239854376 | GAAC | G | intron_variant | MODIFIER | HG02723.hp2 HG02818.hp1 HG03195.hp1 others(3): Show |
a0001 | a0001c0001 | a0001c0001t0003a0001c0001t0009a0001c0001t0018others(3): Show | a0001c0001t0003g0039a0001c0001t0009g0111a0001c0001t0018g0022others(3): Show | 6 | 116 | 0.0517 | -3 | c.-20 others(22): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 6/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM3_chr1_239381568_239920450 | 239865236 | ACTC | A | intron_variant | MODIFIER | NA18906.hp1 NA20129.hp1 |
a0001 | a0001c0001 | a0001c0001t0009a0001c0001t0021 | a0001c0001t0009g0045a0001c0001t0021g0093 | 2 | 116 | 0.0172 | -3 | c.-20 others(22): Show |
CHRM3 | ENSG00000133019.12 | transcript | ENST00000676153.1 | protein_coding | 6/6 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | |||||
CHRM5_chr15_33963497_34072458 | 33968099 | TAAA | T | upstream_gene_variant | MODIFIER | HG00140.hp1 HG02145.hp2 HG02572.hp1 others(6): Show |
a0001a0004 | a0001c0001a0001c0002a0001c0009others(1): Show | a0001c0001t0003a0001c0001t0014a0001c0002t0030others(2): Show | a0001c0001t0003g0007a0001c0001t0003g0022a0001c0001t0003g0294others(6): Show | 9 | 338 | 0.0266 | -3 | c.-14 others(14): Show |
CHRM5 | ENSG00000184984.10 | transcript | ENST00000383263.7 | protein_coding | 397 | chr15 | TogoVar | ||||||
CHRM5_chr15_33963497_34072458 | 33996371 | GCCT | G | intron_variant | MODIFIER | HG01243.hp2 HG02809.hp1 HG02895.hp2 others(1): Show |
a0001 | a0001c0001 | a0001c0001t0010 | a0001c0001t0010g0052a0001c0001t0010g0053a0001c0001t0010g0054others(1): Show | 4 | 338 | 0.0118 | -3 | c.-40 others(24): Show |
CHRM5 | ENSG00000184984.10 | transcript | ENST00000383263.7 | protein_coding | 1/2 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | |||||
CHRM5_chr15_33963497_34072458 | 34002529 | ACTT | A | intron_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00323.hp2 others(144): Show |
a0001a0005a0006 | a0001c0001a0001c0002a0001c0006others(3): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(23): Show | a0001c0001t0001g0004a0001c0001t0001g0077a0001c0001t0001g0078others(142): Show | 147 | 338 | 0.4349 | -3 | c.-40 others(24): Show |
CHRM5 | ENSG00000184984.10 | transcript | ENST00000383263.7 | protein_coding | 1/2 | chr15 | TogoVar | ||||||
CHRM5_chr15_33963497_34072458 | 34004605 | GTGT | G | intron_variant | MODIFIER | HG02258.hp2 HG02572.hp2 HG02622.hp1 others(2): Show |
a0001a0004a0007 | a0001c0001a0004c0005a0007c0011 | a0001c0001t0003a0001c0001t0034a0004c0005t0019others(1): Show | a0001c0001t0003g0051a0001c0001t0034g0280a0004c0005t0019g0293others(2): Show | 5 | 338 | 0.0148 | -3 | c.-40 others(24): Show |
CHRM5 | ENSG00000184984.10 | transcript | ENST00000383263.7 | protein_coding | 1/2 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | |||||
CHRM5_chr15_33963497_34072458 | 34008652 | CTAA | C | intron_variant | MODIFIER | HG01070.hp2 HG01071.hp2 HG02717.hp1 others(4): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0001t0011a0001c0001t0037others(1): Show | a0001c0001t0001g0286a0001c0001t0011g0287a0001c0001t0011g0288others(4): Show | 7 | 338 | 0.0207 | -3 | c.-40 others(24): Show |
CHRM5 | ENSG00000184984.10 | transcript | ENST00000383263.7 | protein_coding | 1/2 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | |||||
CHRM5_chr15_33963497_34072458 | 34014382 | AAAC | A | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(102): Show |
a0001a0005a0006others(1): Show | a0001c0001a0001c0002a0001c0006others(3): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(19): Show | a0001c0001t0001g0004a0001c0001t0001g0077a0001c0001t0001g0137others(99): Show | 105 | 338 | 0.3107 | -3 | c.-40 others(24): Show |
CHRM5 | ENSG00000184984.10 | transcript | ENST00000383263.7 | protein_coding | 1/2 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | |||||
CHRM5_chr15_33963497_34072458 | 34027840 | AAAC | A | intron_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00323.hp2 others(98): Show |
a0001a0005a0006 | a0001c0001a0005c0008a0006c0007 | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(11): Show | a0001c0001t0001g0077a0001c0001t0001g0082a0001c0001t0001g0137others(97): Show | 101 | 338 | 0.2988 | -3 | c.-40 others(24): Show |
CHRM5 | ENSG00000184984.10 | transcript | ENST00000383263.7 | protein_coding | 1/2 | chr15 | TogoVar | ||||||
CHRM5_chr15_33963497_34072458 | 34029517 | CAAA | C | intron_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00408.hp2 others(118): Show |
a0001a0005a0006 | a0001c0001a0001c0002a0001c0006others(3): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(23): Show | a0001c0001t0001g0082a0001c0001t0001g0137a0001c0001t0001g0138others(117): Show | 121 | 338 | 0.3580 | -3 | c.-40 others(24): Show |
CHRM5 | ENSG00000184984.10 | transcript | ENST00000383263.7 | protein_coding | 1/2 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | |||||
CHRM5_chr15_33963497_34072458 | 34053299 | CAAA | C | intron_variant | MODIFIER | HG00140.hp2 HG00323.hp1 HG00408.hp1 others(24): Show |
a0001a0003 | a0001c0001a0003c0004 | a0001c0001t0001a0001c0001t0015a0001c0001t0020others(2): Show | a0001c0001t0001g0004a0001c0001t0001g0073a0001c0001t0001g0074others(23): Show | 27 | 338 | 0.0799 | -3 | c.-76 others(20): Show |
CHRM5 | ENSG00000184984.10 | transcript | ENST00000383263.7 | protein_coding | 2/2 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | |||||
CHRM5_chr15_33963497_34072458 | 34053320 | ATAT | A | intron_variant | MODIFIER | HG01168.hp2 HG01169.hp2 HG01257.hp2 others(25): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0001t0003a0001c0001t0009others(7): Show | a0001c0001t0001g0077a0001c0001t0001g0189a0001c0001t0003g0294others(25): Show | 28 | 338 | 0.0828 | -3 | c.-76 others(20): Show |
CHRM5 | ENSG00000184984.10 | transcript | ENST00000383263.7 | protein_coding | 2/2 | chr15 | TogoVar | ||||||
CHRNA10_chr11_3660587_3676384 | 3663086 | CTCA | C | downstream_gene_variant | MODIFIER | HG01243.hp2 HG02451.hp1 NA18953.hp2 others(2): Show |
a0001a0010 | a0001c0001a0001c0008a0010c0014 | a0001c0001t0001a0001c0008t0001a0010c0014t0001 | a0001c0001t0001g0002a0001c0001t0001g0004a0001c0008t0001g0028others(1): Show | 5 | 450 | 0.0111 | -3 | c.*30 others(14): Show |
CHRNA10 | ENSG00000129749.3 | transcript | ENST00000250699.2 | protein_coding | 2500 | chr11 | TogoVar | ||||||
CHRNA10_chr11_3660587_3676384 | 3668665 | AGAC | A | intron_variant | MODIFIER | HG02451.hp2 HG02615.hp2 HG02818.hp1 others(4): Show |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0011a0001c0001t0001g0080 | 7 | 450 | 0.0156 | -3 | c.362 others(18): Show |
CHRNA10 | ENSG00000129749.3 | transcript | ENST00000250699.2 | protein_coding | 3/4 | chr11 | TogoVar | ||||||
CHRNA1_chr2_174742592_174769472 | 174746387 | TCTC | T | downstream_gene_variant | MODIFIER | HG00639.hp2 HG01069.hp2 HG01081.hp1 others(2): Show |
a0001 | a0001c0002 | a0001c0002t0001 | a0001c0002t0001g0003a0001c0002t0001g0067a0001c0002t0001g0076 | 5 | 370 | 0.0135 | -3 | c.*17 others(14): Show |
CHRNA1 | ENSG00000138435.16 | transcript | ENST00000348749.9 | protein_coding | 1204 | chr2 | TogoVar | ||||||
CHRNA1_chr2_174742592_174769472 | 174748849 | AATT | A | intron_variant | MODIFIER | HG02055.hp1 HG02055.hp2 HG02280.hp1 others(7): Show |
a0001a0002 | a0001c0002a0002c0003 | a0001c0002t0001a0002c0003t0001 | a0001c0002t0001g0024a0002c0003t0001g0008a0002c0003t0001g0061others(2): Show | 10 | 370 | 0.0270 | -3 | c.100 others(18): Show |
CHRNA1 | ENSG00000138435.16 | transcript | ENST00000348749.9 | protein_coding | 7/8 | chr2 | TogoVar | ||||||
CHRNA1_chr2_174742592_174769472 | 174750180 | CAAA | C | intron_variant | MODIFIER | HG02257.hp2 HG02258.hp1 HG02486.hp1 others(6): Show |
a0001a0003a0004others(2): Show | a0001c0001a0003c0004a0004c0005others(2): Show | a0001c0001t0004a0001c0001t0007a0003c0004t0001others(3): Show | a0001c0001t0004g0170a0001c0001t0007g0082a0003c0004t0001g0028others(4): Show | 9 | 370 | 0.0243 | -3 | c.779 others(16): Show |
CHRNA1 | ENSG00000138435.16 | transcript | ENST00000348749.9 | protein_coding | 6/8 | chr2 | TogoVar | ||||||
CHRNA2_chr8_27454756_27484261 | 27457996 | AAAG | A | downstream_gene_variant | MODIFIER | HG00323.hp1 HG01070.hp1 HG01099.hp2 others(20): Show |
a0001a0002 | a0001c0001a0002c0002a0002c0010 | a0001c0001t0001a0001c0001t0010a0001c0001t0011others(10): Show | a0001c0001t0001g0036a0001c0001t0001g0224a0001c0001t0010g0062others(16): Show | 23 | 458 | 0.0502 | -3 | c.*36 others(14): Show |
CHRNA2 | ENSG00000120903.13 | transcript | ENST00000407991.3 | protein_coding | 1759 | chr8 | TogoVar | ||||||
CHRNA2_chr8_27454756_27484261 | 27460602 | ATCT | A | 3_prime_UTR_variant | MODIFIER | HG02486.hp2 HG02647.hp2 HG02809.hp2 others(8): Show |
a0001 | a0001c0001 | a0001c0001t0011a0001c0001t0023a0001c0001t0035others(1): Show | a0001c0001t0011g0012a0001c0001t0011g0032a0001c0001t0023g0139others(3): Show | 11 | 458 | 0.0240 | -3 | c.*10 others(14): Show |
CHRNA2 | ENSG00000120903.13 | transcript | ENST00000407991.3 | protein_coding | 7/7 | 1024 | chr8 | TogoVar | |||||
CHRNA3_chr15_78590309_78625996 | 78592784 | GAAT | G | downstream_gene_variant | MODIFIER | HG00408.hp2 HG00597.hp2 HG01243.hp1 others(32): Show |
a0001 | a0001c0004 | a0001c0004t0005a0001c0004t0006a0001c0004t0009others(1): Show | a0001c0004t0005g0016a0001c0004t0005g0220a0001c0004t0005g0224others(25): Show | 35 | 410 | 0.0854 | -3 | c.*38 others(14): Show |
CHRNA3 | ENSG00000080644.16 | transcript | ENST00000326828.6 | protein_coding | 2524 | chr15 | TogoVar | ||||||
CHRNA3_chr15_78590309_78625996 | 78593881 | AAAT | A | downstream_gene_variant | MODIFIER | HG01243.hp1 HG01346.hp1 HG02055.hp2 others(17): Show |
a0001 | a0001c0004 | a0001c0004t0006a0001c0004t0013 | a0001c0004t0006g0015a0001c0004t0006g0049a0001c0004t0006g0050others(12): Show | 20 | 410 | 0.0488 | -3 | c.*27 others(14): Show |
CHRNA3 | ENSG00000080644.16 | transcript | ENST00000326828.6 | protein_coding | 1427 | chr15 | TogoVar | ||||||
CHRNA3_chr15_78590309_78625996 | 78600016 | CAAA | C | intron_variant | MODIFIER | HG01891.hp1 HG02055.hp1 HG02486.hp1 others(11): Show |
a0001 | a0001c0004a0001c0006 | a0001c0004t0008a0001c0006t0007 | a0001c0004t0008g0007a0001c0004t0008g0033a0001c0004t0008g0110others(6): Show | 14 | 410 | 0.0342 | -3 | c.138 others(22): Show |
CHRNA3 | ENSG00000080644.16 | transcript | ENST00000326828.6 | protein_coding | 5/5 | chr15 | TogoVar | ||||||
CHRNA3_chr15_78590309_78625996 | 78615739 | ATTT | A | intron_variant | MODIFIER | HG00099.hp1 HG00408.hp2 HG00597.hp2 others(78): Show |
a0001a0002a0003 | a0001c0004a0001c0005a0001c0008others(2): Show | a0001c0004t0002a0001c0004t0005a0001c0004t0006others(10): Show | a0001c0004t0002g0134a0001c0004t0005g0016a0001c0004t0005g0220others(52): Show | 81 | 410 | 0.1976 | -3 | c.377 others(20): Show |
CHRNA3 | ENSG00000080644.16 | transcript | ENST00000326828.6 | protein_coding | 4/5 | chr15 | TogoVar | ||||||
CHRNA3_chr15_78590309_78625996 | 78620725 | ACAG | A | conservative_inframe_deletion | MODERATE | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(311): Show |
a0001a0007a0008 | a0001c0001a0001c0003a0001c0004others(7): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(29): Show | a0001c0001t0001g0003a0001c0001t0001g0004a0001c0001t0001g0005others(233): Show | 314 | 410 | 0.7659 | -3 | c.67_ others(8): Show |
p.Leu others(5): Show |
CHRNA3 | ENSG00000080644.16 | transcript | ENST00000326828.6 | protein_coding | 1/6 | 271/3015 | 67/1518 | 23/505 | chr15 | TogoVar | ||
CHRNA3_chr15_78590309_78625996 | 78622847 | CAAA | C | upstream_gene_variant | MODIFIER | HG00099.hp1 HG00140.hp1 HG00140.hp2 others(151): Show |
a0001a0002a0003others(3): Show | a0001c0001a0001c0003a0001c0004others(10): Show | a0001c0001t0001a0001c0003t0001a0001c0003t0002others(23): Show | a0001c0001t0001g0003a0001c0001t0001g0040a0001c0001t0001g0164others(121): Show | 154 | 410 | 0.3756 | -3 | c.-20 others(14): Show |
CHRNA3 | ENSG00000080644.16 | transcript | ENST00000326828.6 | protein_coding | 1852 | chr15 | TogoVar |