Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNTN5_chr11_99015949_100363885	100276527	CAAA CAAA	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02886.hp2 HG03041.hp1 others(6): Show HG01081.hp1 HG02886.hp2 HG03041.hp1 HG03041.hp2 HG03471.hp2 HG06807.hp2 NA18522.hp2 NA19070.hp1 NA20300.hp2	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0005 a0009 a0012	a0001c0001 a0002c0002 a0003c0003 others(4): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0005c0005 a0009c0012 a0012c0013	a0001c0001t0001 a0001c0001t0004 a0001c0001t0010 others(6): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0010 a0002c0002t0001 a0003c0003t0007 a0004c0004t0020 a0005c0005t0018 a0009c0012t0008 a0012c0013t0008	a0001c0001t0001g0020 a0001c0001t0004g0029 a0001c0001t0010g0023 others(6): Show a0001c0001t0001g0020 a0001c0001t0004g0029 a0001c0001t0010g0023 a0002c0002t0001g0003 a0003c0003t0007g0057 a0004c0004t0020g0024 a0005c0005t0018g0028 a0009c0012t0008g0026 a0012c0013t0008g0031	9	66	0.1364	-3	c.231 others(22): Show c.2314+5309_2314+5311delAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	18/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100333408	GAAA GAAA	G G	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02257.hp1 HG02602.hp2 others(2): Show HG02004.hp1 HG02257.hp1 HG02602.hp2 HG02895.hp2 NA18939.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0003 a0003c0011 others(1): Show a0001c0001 a0003c0003 a0003c0011 a0004c0004	a0001c0001t0001 a0003c0003t0017 a0003c0011t0019 others(1): Show a0001c0001t0001 a0003c0003t0017 a0003c0011t0019 a0004c0004t0013	a0001c0001t0001g0053 a0001c0001t0001g0054 a0003c0003t0017g0065 others(2): Show a0001c0001t0001g0053 a0001c0001t0001g0054 a0003c0003t0017g0065 a0003c0011t0019g0059 a0004c0004t0013g0050	5	66	0.0758	-3	c.273 others(22): Show c.2731-7033_2731-7031delAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	21/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100344920	TATA TATA	T T	intron_variant intron_variant	MODIFIER	HG03041.hp1 NA20300.hp2 HG03041.hp1 NA20300.hp2	a0009 a0012 a0009 a0012	a0009c0012 a0012c0013 a0009c0012 a0012c0013	a0009c0012t0008 a0012c0013t0008 a0009c0012t0008 a0012c0013t0008	a0009c0012t0008g0026 a0012c0013t0008g0031 a0009c0012t0008g0026 a0012c0013t0008g0031	2	66	0.0303	-3	c.303 others(22): Show c.3030+3720_3030+3722delTAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	23/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN6_chr3_1088024_1409217	1088474	CTTA CTTA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01952.hp2 HG02109.hp2 HG02559.hp2 others(11): Show HG01952.hp2 HG02109.hp2 HG02559.hp2 HG02572.hp1 HG02630.hp2 HG02717.hp2 HG02809.hp2 HG02922.hp1 HG03130.hp1 HG03209.hp2 HG03225.hp1 HG03516.hp2 NA18522.hp1 NA18906.hp1	a0001 a0005 a0001 a0005	a0001c0002 a0001c0003 a0001c0005 others(4): Show a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0008 a0001c0013 a0005c0026	a0001c0002t0001 a0001c0003t0001 a0001c0005t0001 others(4): Show a0001c0002t0001 a0001c0003t0001 a0001c0005t0001 a0001c0006t0001 a0001c0008t0001 a0001c0013t0001 a0005c0026t0001	a0001c0002t0001g0209 a0001c0003t0001g0219 a0001c0005t0001g0005 others(11): Show a0001c0002t0001g0209 a0001c0003t0001g0219 a0001c0005t0001g0005 a0001c0005t0001g0215 a0001c0006t0001g0183 a0001c0006t0001g0213 a0001c0006t0001g0216 a0001c0006t0001g0223 a0001c0008t0001g0211 a0001c0008t0001g0212 a0001c0008t0001g0214 a0001c0008t0001g0218 a0001c0013t0001g0208 a0005c0026t0001g0091	14	232	0.0603	-3	c.-47 others(14): Show c.-4728_-4726delTTA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding		4549		chr3	TogoVar
CNTN6_chr3_1088024_1409217	1098230	TATA TATA	T T	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG01884.hp1 others(45): Show HG01167.hp2 HG01169.hp2 HG01884.hp1 HG01884.hp2 HG01952.hp2 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02257.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02451.hp1 HG02486.hp2 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02723.hp1 HG02809.hp1 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03225.hp1 HG03453.hp2 HG03471.hp2 HG03516.hp2 HG03579.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA19043.hp1 NA19043.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	a0001c0001 a0001c0002 a0001c0003 others(14): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0008 a0001c0010 a0001c0013 a0001c0019 a0001c0023 a0001c0025 a0002c0011 a0002c0014 a0002c0017 a0003c0015 a0004c0016 a0006c0027	a0001c0001t0001 a0001c0002t0001 a0001c0002t0009 others(17): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0009 a0001c0003t0001 a0001c0005t0001 a0001c0005t0004 a0001c0006t0001 a0001c0006t0002 a0001c0008t0001 a0001c0010t0001 a0001c0013t0001 a0001c0019t0001 a0001c0023t0001 a0001c0025t0001 a0002c0011t0001 a0002c0014t0001 a0002c0017t0001 a0003c0015t0001 a0004c0016t0001 a0006c0027t0001	a0001c0001t0001g0190 a0001c0001t0001g0198 a0001c0002t0001g0209 others(45): Show a0001c0001t0001g0190 a0001c0001t0001g0198 a0001c0002t0001g0209 a0001c0002t0009g0205 a0001c0003t0001g0177 a0001c0003t0001g0219 a0001c0005t0001g0180 a0001c0005t0001g0181 a0001c0005t0001g0182 a0001c0005t0001g0188 a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0005t0001g0196 a0001c0005t0001g0207 a0001c0005t0001g0215 a0001c0005t0004g0194 a0001c0006t0001g0183 a0001c0006t0001g0184 a0001c0006t0001g0185 a0001c0006t0001g0187 a0001c0006t0001g0195 a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0006t0001g0210 a0001c0006t0001g0213 a0001c0006t0001g0216 a0001c0006t0002g0178 a0001c0008t0001g0010 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0212 a0001c0008t0001g0214 a0001c0010t0001g0009 a0001c0010t0001g0206 a0001c0013t0001g0199 a0001c0013t0001g0208 a0001c0019t0001g0202 a0001c0023t0001g0186 a0001c0025t0001g0192 a0002c0011t0001g0006 a0002c0011t0001g0217 a0002c0014t0001g0232 a0002c0017t0001g0179 a0003c0015t0001g0007 a0003c0015t0001g0008 a0004c0016t0001g0002 a0004c0016t0001g0003 a0006c0027t0001g0191	48	232	0.2069	-3	c.-83 others(20): Show c.-83+5117_-83+5119delATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1116698	CTTT CTTT	C C	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01169.hp1 HG02809.hp2 others(5): Show HG01167.hp1 HG01169.hp1 HG02809.hp2 HG03130.hp1 HG03516.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(4): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0007 a0001c0008 a0001c0024	a0001c0001t0001 a0001c0002t0001 a0001c0004t0001 others(4): Show a0001c0001t0001 a0001c0002t0001 a0001c0004t0001 a0001c0005t0001 a0001c0007t0006 a0001c0008t0001 a0001c0024t0001	a0001c0001t0001g0131 a0001c0002t0001g0160 a0001c0004t0001g0158 others(5): Show a0001c0001t0001g0131 a0001c0002t0001g0160 a0001c0004t0001g0158 a0001c0005t0001g0005 a0001c0005t0001g0164 a0001c0007t0006g0170 a0001c0008t0001g0218 a0001c0024t0001g0070	8	232	0.0345	-3	c.-83 others(22): Show c.-83+23600_-83+23602delTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1152001	TTAA TTAA	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02257.hp2 HG02258.hp1 others(5): Show HG02055.hp1 HG02257.hp2 HG02258.hp1 HG02647.hp2 HG02809.hp1 HG02809.hp2 HG02896.hp1 HG03516.hp2	a0001 a0003 a0001 a0003	a0001c0003 a0001c0005 a0001c0006 others(3): Show a0001c0003 a0001c0005 a0001c0006 a0001c0010 a0001c0021 a0003c0015	a0001c0003t0001 a0001c0005t0001 a0001c0006t0001 others(3): Show a0001c0003t0001 a0001c0005t0001 a0001c0006t0001 a0001c0010t0001 a0001c0021t0001 a0003c0015t0001	a0001c0003t0001g0219 a0001c0005t0001g0005 a0001c0006t0001g0037 others(5): Show a0001c0003t0001g0219 a0001c0005t0001g0005 a0001c0006t0001g0037 a0001c0010t0001g0009 a0001c0010t0001g0206 a0001c0021t0001g0231 a0003c0015t0001g0007 a0003c0015t0001g0008	8	232	0.0345	-3	c.55+ others(18): Show c.55+3940_55+3942delAAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1152723	AATT AATT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02109.hp1 HG02145.hp1 others(16): Show HG01884.hp2 HG02109.hp1 HG02145.hp1 HG02145.hp2 HG02486.hp2 HG02559.hp1 HG02717.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp1 HG02976.hp2 HG03209.hp1 HG03453.hp1 HG03579.hp2 HG06807.hp1 NA18522.hp1 NA19030.hp2 NA21309.hp2	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0006	a0001c0001 a0001c0002 a0001c0005 others(7): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0002c0011 a0002c0017 a0004c0016 a0006c0027	a0001c0001t0001 a0001c0002t0001 a0001c0002t0004 others(10): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0004 a0001c0002t0009 a0001c0005t0001 a0001c0006t0001 a0001c0006t0004 a0001c0007t0001 a0001c0008t0001 a0002c0011t0001 a0002c0017t0001 a0004c0016t0001 a0006c0027t0001	a0001c0001t0001g0190 a0001c0002t0001g0227 a0001c0002t0004g0228 others(16): Show a0001c0001t0001g0190 a0001c0002t0001g0227 a0001c0002t0004g0228 a0001c0002t0009g0205 a0001c0005t0001g0188 a0001c0006t0001g0111 a0001c0006t0001g0162 a0001c0006t0001g0213 a0001c0006t0001g0223 a0001c0006t0004g0119 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0135 a0001c0008t0001g0143 a0002c0011t0001g0006 a0002c0017t0001g0179 a0004c0016t0001g0002 a0004c0016t0001g0003 a0006c0027t0001g0191	19	232	0.0819	-3	c.55+ others(18): Show c.55+4665_55+4667delTTA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1160662	TAAA TAAA	T T	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00738.hp1 HG00738.hp2 others(58): Show HG00609.hp2 HG00738.hp1 HG00738.hp2 HG01070.hp2 HG01167.hp1 HG01167.hp2 HG01169.hp2 HG01175.hp2 HG01496.hp2 HG01884.hp1 HG02015.hp2 HG02055.hp1 HG02056.hp2 HG02148.hp1 HG02155.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02647.hp1 HG02698.hp2 HG02723.hp1 HG02809.hp1 HG02809.hp2 HG02896.hp1 HG02922.hp1 HG02970.hp2 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03516.hp2 HG03579.hp1 HG03834.hp2 HG04204.hp1 HG04204.hp2 NA18522.hp2 NA18612.hp2 NA18747.hp1 NA18906.hp1 NA18948.hp1 NA18948.hp2 NA18949.hp1 NA18951.hp1 NA18953.hp2 NA18954.hp2 NA18961.hp1 NA18969.hp1 NA18969.hp2 NA18971.hp2 NA18972.hp1 NA18980.hp1 NA19002.hp2 NA19065.hp1 NA19065.hp2 NA19084.hp1 NA20129.hp2 NA20300.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(14): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0010 a0001c0013 a0001c0019 a0001c0021 a0001c0022 a0001c0023 a0001c0024 a0002c0014 a0003c0015	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(16): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0003t0001 a0001c0004t0001 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001 a0001c0010t0001 a0001c0013t0001 a0001c0019t0001 a0001c0021t0001 a0001c0022t0001 a0001c0023t0001 a0001c0024t0001 a0002c0014t0001 a0003c0015t0001	a0001c0001t0001g0029 a0001c0001t0001g0035 a0001c0001t0001g0071 others(58): Show a0001c0001t0001g0029 a0001c0001t0001g0035 a0001c0001t0001g0071 a0001c0001t0001g0082 a0001c0001t0001g0129 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0068 a0001c0002t0001g0121 a0001c0002t0001g0138 a0001c0002t0001g0145 a0001c0002t0001g0160 a0001c0002t0002g0020 a0001c0002t0005g0050 a0001c0003t0001g0081 a0001c0003t0001g0112 a0001c0003t0001g0161 a0001c0003t0001g0166 a0001c0003t0001g0219 a0001c0004t0001g0023 a0001c0004t0001g0034 a0001c0004t0001g0060 a0001c0004t0001g0066 a0001c0004t0001g0073 a0001c0004t0001g0080 a0001c0004t0001g0083 a0001c0004t0001g0089 a0001c0004t0001g0127 a0001c0004t0001g0128 a0001c0004t0001g0132 a0001c0005t0001g0005 a0001c0005t0001g0163 a0001c0005t0001g0180 a0001c0005t0001g0182 a0001c0005t0001g0207 a0001c0005t0001g0215 a0001c0005t0001g0230 a0001c0006t0001g0028 a0001c0006t0001g0187 a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0006t0001g0229 a0001c0007t0001g0012 a0001c0008t0001g0075 a0001c0008t0001g0120 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0212 a0001c0008t0001g0214 a0001c0008t0001g0218 a0001c0010t0001g0009 a0001c0010t0001g0206 a0001c0013t0001g0208 a0001c0019t0001g0202 a0001c0021t0001g0231 a0001c0022t0001g0137 a0001c0023t0001g0186 a0001c0024t0001g0070 a0002c0014t0001g0220 a0003c0015t0001g0007 a0003c0015t0001g0008	61	232	0.2629	-3	c.55+ others(20): Show c.55+12612_55+12614delAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1161308	TAGC TAGC	T T	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00738.hp1 HG00738.hp2 others(58): Show HG00609.hp2 HG00738.hp1 HG00738.hp2 HG01070.hp2 HG01167.hp1 HG01167.hp2 HG01169.hp2 HG01175.hp2 HG01496.hp2 HG01884.hp1 HG02015.hp2 HG02055.hp1 HG02056.hp2 HG02148.hp1 HG02155.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02647.hp1 HG02647.hp2 HG02698.hp2 HG02723.hp1 HG02809.hp1 HG02809.hp2 HG02896.hp1 HG02922.hp1 HG02970.hp2 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03516.hp2 HG03579.hp1 HG03834.hp2 HG04204.hp1 HG04204.hp2 NA18522.hp2 NA18612.hp2 NA18906.hp1 NA18948.hp1 NA18948.hp2 NA18949.hp1 NA18951.hp1 NA18953.hp2 NA18954.hp2 NA18961.hp1 NA18969.hp1 NA18969.hp2 NA18971.hp2 NA18972.hp1 NA18980.hp1 NA19002.hp2 NA19003.hp1 NA19065.hp2 NA19084.hp1 NA20129.hp2 NA20300.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(14): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0010 a0001c0013 a0001c0019 a0001c0021 a0001c0022 a0001c0023 a0001c0024 a0002c0014 a0003c0015	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(16): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0003t0001 a0001c0004t0001 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001 a0001c0010t0001 a0001c0013t0001 a0001c0019t0001 a0001c0021t0001 a0001c0022t0001 a0001c0023t0001 a0001c0024t0001 a0002c0014t0001 a0003c0015t0001	a0001c0001t0001g0029 a0001c0001t0001g0035 a0001c0001t0001g0071 others(58): Show a0001c0001t0001g0029 a0001c0001t0001g0035 a0001c0001t0001g0071 a0001c0001t0001g0082 a0001c0001t0001g0129 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0068 a0001c0002t0001g0121 a0001c0002t0001g0138 a0001c0002t0001g0160 a0001c0002t0002g0020 a0001c0002t0005g0050 a0001c0003t0001g0081 a0001c0003t0001g0112 a0001c0003t0001g0161 a0001c0003t0001g0166 a0001c0003t0001g0219 a0001c0004t0001g0022 a0001c0004t0001g0023 a0001c0004t0001g0060 a0001c0004t0001g0066 a0001c0004t0001g0073 a0001c0004t0001g0080 a0001c0004t0001g0083 a0001c0004t0001g0089 a0001c0004t0001g0127 a0001c0004t0001g0128 a0001c0004t0001g0132 a0001c0005t0001g0005 a0001c0005t0001g0163 a0001c0005t0001g0180 a0001c0005t0001g0182 a0001c0005t0001g0207 a0001c0005t0001g0215 a0001c0005t0001g0230 a0001c0006t0001g0028 a0001c0006t0001g0037 a0001c0006t0001g0187 a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0006t0001g0229 a0001c0007t0001g0012 a0001c0008t0001g0075 a0001c0008t0001g0120 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0212 a0001c0008t0001g0214 a0001c0008t0001g0218 a0001c0010t0001g0009 a0001c0010t0001g0206 a0001c0013t0001g0208 a0001c0019t0001g0202 a0001c0021t0001g0231 a0001c0022t0001g0137 a0001c0023t0001g0186 a0001c0024t0001g0070 a0002c0014t0001g0220 a0003c0015t0001g0007 a0003c0015t0001g0008	61	232	0.2629	-3	c.55+ others(20): Show c.55+13251_55+13253delCAG	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1174651	TCTC TCTC	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp2 HG02109.hp2 others(13): Show HG02055.hp1 HG02055.hp2 HG02109.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02559.hp1 HG02615.hp1 HG02647.hp2 HG02809.hp2 HG02896.hp1 HG02976.hp2 NA18522.hp1 NA19043.hp2 NA21309.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0002 a0001c0005 a0001c0006 others(7): Show a0001c0002 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0010 a0001c0021 a0002c0011 a0002c0014 a0003c0015	a0001c0002t0001 a0001c0002t0004 a0001c0005t0001 others(8): Show a0001c0002t0001 a0001c0002t0004 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001 a0001c0010t0001 a0001c0021t0001 a0002c0011t0001 a0002c0014t0001 a0003c0015t0001	a0001c0002t0001g0227 a0001c0002t0004g0228 a0001c0005t0001g0005 others(13): Show a0001c0002t0001g0227 a0001c0002t0004g0228 a0001c0005t0001g0005 a0001c0005t0001g0207 a0001c0006t0001g0037 a0001c0006t0001g0185 a0001c0006t0001g0213 a0001c0006t0001g0216 a0001c0007t0001g0222 a0001c0008t0001g0143 a0001c0010t0001g0206 a0001c0021t0001g0231 a0002c0011t0001g0217 a0002c0014t0001g0232 a0003c0015t0001g0007 a0003c0015t0001g0008	16	232	0.0690	-3	c.55+ others(20): Show c.55+26591_55+26593delCCT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1181945	GACA GACA	G G	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00733.hp1 HG01109.hp1 others(4): Show HG00642.hp1 HG00733.hp1 HG01109.hp1 HG02258.hp2 HG03139.hp2 HG03209.hp2 HG03471.hp1	a0001 a0005 a0001 a0005	a0001c0004 a0001c0005 a0001c0008 others(1): Show a0001c0004 a0001c0005 a0001c0008 a0005c0026	a0001c0004t0002 a0001c0005t0001 a0001c0008t0001 others(1): Show a0001c0004t0002 a0001c0005t0001 a0001c0008t0001 a0005c0026t0001	a0001c0004t0002g0038 a0001c0004t0002g0039 a0001c0005t0001g0157 others(4): Show a0001c0004t0002g0038 a0001c0004t0002g0039 a0001c0005t0001g0157 a0001c0005t0001g0159 a0001c0005t0001g0181 a0001c0008t0001g0010 a0005c0026t0001g0091	7	232	0.0302	-3	c.55+ others(20): Show c.55+33885_55+33887delAAC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1200922	GTTC GTTC	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00423.hp1 HG00639.hp1 others(26): Show HG00140.hp2 HG00423.hp1 HG00639.hp1 HG01074.hp1 HG01175.hp1 HG01255.hp2 HG01256.hp1 HG01261.hp2 HG01515.hp2 HG01517.hp1 HG02040.hp1 HG02055.hp1 HG02074.hp2 HG02257.hp1 HG02258.hp1 HG02451.hp2 HG02602.hp1 HG02630.hp2 HG02738.hp1 HG03225.hp1 HG03516.hp1 HG03710.hp2 NA18949.hp2 NA18961.hp2 NA18980.hp2 NA19002.hp1 NA20129.hp1 NA20300.hp1 NA20752.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0012 a0001c0013 a0003c0015	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0003t0001 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0009t0003 a0001c0012t0001 a0001c0013t0001 a0003c0015t0001	a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0067 others(26): Show a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0067 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0107 a0001c0001t0001g0153 a0001c0001t0001g0156 a0001c0001t0002g0124 a0001c0002t0001g0209 a0001c0003t0001g0011 a0001c0003t0001g0030 a0001c0003t0001g0076 a0001c0003t0001g0077 a0001c0003t0001g0092 a0001c0003t0001g0118 a0001c0003t0001g0172 a0001c0003t0001g0224 a0001c0003t0001g0225 a0001c0005t0001g0164 a0001c0006t0001g0185 a0001c0007t0001g0017 a0001c0007t0001g0052 a0001c0009t0003g0051 a0001c0012t0001g0085 a0001c0013t0001g0208 a0003c0015t0001g0007 a0003c0015t0001g0008	29	232	0.1250	-3	c.56- others(20): Show c.56-19762_56-19760delCTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1233427	TGAA TGAA	T T	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00423.hp2 HG00609.hp1 others(114): Show HG00423.hp1 HG00423.hp2 HG00609.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp2 HG01071.hp1 HG01099.hp2 HG01106.hp1 HG01109.hp2 HG01123.hp1 HG01169.hp1 HG01175.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp1 HG01261.hp1 HG01361.hp2 HG01884.hp2 HG01943.hp2 HG01952.hp2 HG01978.hp1 HG01993.hp1 HG02027.hp2 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02074.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02145.hp1 HG02148.hp2 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02602.hp2 HG02615.hp2 HG02630.hp2 HG02647.hp2 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02738.hp2 HG02809.hp1 HG02896.hp1 HG02965.hp2 HG02976.hp2 HG03130.hp2 HG03225.hp2 HG03239.hp1 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03654.hp2 HG03710.hp2 HG03834.hp1 HG03927.hp1 HG04115.hp1 HG04115.hp2 HG04204.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18953.hp1 NA18953.hp2 NA18954.hp1 NA18954.hp2 NA18961.hp1 NA18961.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18972.hp2 NA18979.hp2 NA18980.hp1 NA19000.hp1 NA19000.hp2 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19009.hp1 NA19009.hp2 NA19030.hp1 NA19065.hp1 NA19065.hp2 NA19084.hp1 NA19084.hp2 NA20905.hp1 NA21309.hp2	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0006 a0007	a0001c0001 a0001c0002 a0001c0003 others(16): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0009 a0001c0010 a0001c0021 a0001c0022 a0001c0023 a0001c0025 a0002c0014 a0003c0015 a0004c0016 a0006c0027 a0007c0018	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(25): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0008 a0001c0002t0009 a0001c0003t0001 a0001c0004t0001 a0001c0004t0005 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0007t0006 a0001c0008t0001 a0001c0009t0001 a0001c0009t0003 a0001c0010t0001 a0001c0021t0001 a0001c0022t0001 a0001c0023t0001 a0001c0025t0001 a0002c0014t0001 a0003c0015t0001 a0004c0016t0001 a0006c0027t0001 a0007c0018t0001	a0001c0001t0001g0024 a0001c0001t0001g0033 a0001c0001t0001g0035 others(114): Show a0001c0001t0001g0024 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0054 a0001c0001t0001g0057 a0001c0001t0001g0071 a0001c0001t0001g0082 a0001c0001t0001g0088 a0001c0001t0001g0093 a0001c0001t0001g0105 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0141 a0001c0001t0001g0149 a0001c0001t0001g0152 a0001c0001t0001g0171 a0001c0001t0001g0173 a0001c0002t0001g0045 a0001c0002t0001g0053 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0068 a0001c0002t0001g0094 a0001c0002t0001g0098 a0001c0002t0001g0116 a0001c0002t0001g0117 a0001c0002t0001g0121 a0001c0002t0001g0136 a0001c0002t0001g0138 a0001c0002t0001g0139 a0001c0002t0001g0145 a0001c0002t0001g0147 a0001c0002t0001g0160 a0001c0002t0001g0174 a0001c0002t0001g0176 a0001c0002t0001g0209 a0001c0002t0001g0227 a0001c0002t0002g0020 a0001c0002t0002g0021 a0001c0002t0003g0079 a0001c0002t0004g0228 a0001c0002t0005g0050 a0001c0002t0008g0221 a0001c0002t0009g0205 a0001c0003t0001g0011 a0001c0003t0001g0025 a0001c0003t0001g0026 a0001c0003t0001g0064 a0001c0003t0001g0074 a0001c0003t0001g0081 a0001c0003t0001g0092 a0001c0003t0001g0112 a0001c0003t0001g0140 a0001c0003t0001g0142 a0001c0003t0001g0144 a0001c0003t0001g0154 a0001c0003t0001g0161 a0001c0003t0001g0165 a0001c0003t0001g0166 a0001c0003t0001g0168 a0001c0003t0001g0172 a0001c0003t0001g0175 a0001c0003t0001g0225 a0001c0003t0001g0226 a0001c0004t0001g0022 a0001c0004t0001g0023 a0001c0004t0001g0034 a0001c0004t0001g0055 a0001c0004t0001g0058 a0001c0004t0001g0060 a0001c0004t0001g0065 a0001c0004t0001g0072 a0001c0004t0001g0080 a0001c0004t0001g0089 a0001c0004t0001g0103 a0001c0004t0001g0123 a0001c0004t0001g0128 a0001c0004t0001g0132 a0001c0004t0001g0158 a0001c0004t0005g0110 a0001c0005t0001g0113 a0001c0005t0001g0164 a0001c0005t0001g0188 a0001c0006t0001g0037 a0001c0006t0001g0183 a0001c0007t0001g0014 a0001c0007t0001g0015 a0001c0007t0001g0048 a0001c0007t0001g0100 a0001c0007t0001g0146 a0001c0007t0001g0155 a0001c0007t0001g0222 a0001c0007t0006g0170 a0001c0008t0001g0075 a0001c0008t0001g0120 a0001c0008t0001g0143 a0001c0008t0001g0211 a0001c0008t0001g0212 a0001c0009t0001g0150 a0001c0009t0003g0051 a0001c0010t0001g0009 a0001c0010t0001g0056 a0001c0010t0001g0206 a0001c0021t0001g0231 a0001c0022t0001g0137 a0001c0023t0001g0186 a0001c0025t0001g0192 a0002c0014t0001g0220 a0003c0015t0001g0007 a0003c0015t0001g0008 a0004c0016t0001g0002 a0004c0016t0001g0003 a0006c0027t0001g0191 a0007c0018t0001g0148	117	232	0.5043	-3	c.358 others(20): Show c.358+5436_358+5438delAAG	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245218	ATAT ATAT	A A	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01258.hp1 HG02056.hp1 others(25): Show HG01256.hp2 HG01258.hp1 HG02056.hp1 HG02056.hp2 HG02523.hp2 HG02647.hp2 HG02698.hp2 HG02738.hp2 HG02965.hp1 HG03239.hp1 HG03710.hp2 HG03927.hp1 HG04115.hp1 NA18612.hp1 NA18747.hp2 NA18949.hp1 NA18950.hp2 NA18951.hp2 NA18961.hp1 NA18969.hp1 NA18972.hp2 NA18980.hp2 NA19009.hp2 NA19030.hp1 NA19043.hp2 NA19065.hp2 NA19084.hp1 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0001c0007 a0001c0009 a0002c0011	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(6): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0006t0001 a0001c0007t0001 a0001c0007t0006 a0001c0009t0001 a0001c0009t0003 a0002c0011t0001	a0001c0001t0001g0024 a0001c0001t0001g0033 a0001c0001t0001g0035 others(25): Show a0001c0001t0001g0024 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0057 a0001c0001t0001g0071 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0002t0001g0121 a0001c0002t0001g0136 a0001c0002t0001g0176 a0001c0003t0001g0076 a0001c0003t0001g0081 a0001c0003t0001g0112 a0001c0003t0001g0140 a0001c0003t0001g0144 a0001c0003t0001g0161 a0001c0003t0001g0166 a0001c0003t0001g0175 a0001c0003t0001g0226 a0001c0006t0001g0037 a0001c0007t0001g0014 a0001c0007t0001g0015 a0001c0007t0001g0048 a0001c0007t0001g0134 a0001c0007t0006g0170 a0001c0009t0001g0150 a0001c0009t0003g0051 a0002c0011t0001g0217	28	232	0.1207	-3	c.358 others(22): Show c.358+17226_358+17228delTAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22			chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245271	ATAT ATAT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02451.hp1 HG03471.hp2 others(1): Show HG01884.hp2 HG02451.hp1 HG03471.hp2 HG06807.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0004 a0001c0005t0001 a0001c0005t0004	a0001c0005t0001g0188 a0001c0005t0001g0189 a0001c0005t0001g0193 others(1): Show a0001c0005t0001g0188 a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0005t0004g0194	4	232	0.0172	-3	c.358 others(22): Show c.358+17279_358+17281delTAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22			chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245273	ATAC ATAC	A A	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00735.hp2 HG00738.hp1 others(24): Show HG00609.hp2 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01074.hp2 HG01106.hp2 HG01123.hp2 HG01361.hp1 HG01496.hp1 HG01884.hp1 HG01943.hp2 HG01978.hp2 HG02015.hp2 HG02027.hp1 HG02074.hp1 HG02155.hp1 HG02486.hp1 HG02723.hp1 HG02922.hp1 HG03492.hp2 HG03927.hp2 NA18747.hp1 NA18948.hp1 NA18954.hp2 NA18971.hp1 NA18979.hp1 NA20752.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0005 others(4): Show a0001c0002 a0001c0004 a0001c0005 a0001c0008 a0001c0010 a0001c0022 a0001c0023	a0001c0002t0001 a0001c0002t0003 a0001c0004t0001 others(5): Show a0001c0002t0001 a0001c0002t0003 a0001c0004t0001 a0001c0005t0001 a0001c0008t0001 a0001c0010t0001 a0001c0022t0001 a0001c0023t0001	a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0084 others(24): Show a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0084 a0001c0002t0001g0145 a0001c0002t0003g0069 a0001c0002t0003g0079 a0001c0004t0001g0041 a0001c0004t0001g0055 a0001c0004t0001g0061 a0001c0004t0001g0065 a0001c0004t0001g0072 a0001c0004t0001g0073 a0001c0004t0001g0083 a0001c0004t0001g0090 a0001c0004t0001g0127 a0001c0005t0001g0004 a0001c0005t0001g0016 a0001c0008t0001g0043 a0001c0008t0001g0087 a0001c0008t0001g0120 a0001c0008t0001g0167 a0001c0008t0001g0169 a0001c0008t0001g0197 a0001c0008t0001g0214 a0001c0010t0001g0056 a0001c0022t0001g0137 a0001c0023t0001g0186	27	232	0.1164	-3	c.358 others(22): Show c.358+17281_358+17283delTAC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22			chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245275	ACAC ACAC	A A	intron_variant intron_variant	MODIFIER	HG02922.hp2 NA20905.hp2 HG02922.hp2 NA20905.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0002 a0001c0005	a0001c0002t0001 a0001c0005t0001 a0001c0002t0001 a0001c0005t0001	a0001c0002t0001g0018 a0001c0005t0001g0196 a0001c0002t0001g0018 a0001c0005t0001g0196	2	232	0.0086	-3	c.358 others(22): Show c.358+17283_358+17285delCAC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22			chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245292	TAAC TAAC	T T	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG02165.hp1 HG02257.hp1 others(8): Show HG00609.hp1 HG02165.hp1 HG02257.hp1 HG02698.hp2 HG03654.hp2 HG03834.hp1 HG04204.hp2 NA18954.hp1 NA18979.hp2 NA19003.hp2 NA19084.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0007c0018	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(2): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0006t0001 a0007c0018t0001	a0001c0001t0001g0047 a0001c0001t0001g0054 a0001c0001t0001g0082 others(8): Show a0001c0001t0001g0047 a0001c0001t0001g0054 a0001c0001t0001g0082 a0001c0001t0001g0088 a0001c0001t0001g0093 a0001c0001t0001g0171 a0001c0002t0001g0121 a0001c0003t0001g0161 a0001c0003t0001g0168 a0001c0006t0001g0185 a0007c0018t0001g0148	11	232	0.0474	-3	c.358 others(22): Show c.358+17301_358+17303delACA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245305	TATA TATA	T T	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG03579.hp2 HG01952.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0001 a0001c0006t0001 a0001c0001t0001 a0001c0006t0001	a0001c0001t0001g0190 a0001c0006t0001g0183 a0001c0001t0001g0190 a0001c0006t0001g0183	2	232	0.0086	-3	c.358 others(22): Show c.358+17313_358+17315delATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22			chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245624	TCAC TCAC	T T	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG02055.hp1 others(3): Show HG01167.hp2 HG01169.hp2 HG02055.hp1 HG02258.hp1 HG02572.hp2 NA18522.hp2	a0001 a0003 a0001 a0003	a0001c0006 a0001c0019 a0003c0015 a0001c0006 a0001c0019 a0003c0015	a0001c0006t0001 a0001c0019t0001 a0003c0015t0001 a0001c0006t0001 a0001c0019t0001 a0003c0015t0001	a0001c0006t0001g0195 a0001c0006t0001g0200 a0001c0006t0001g0201 others(3): Show a0001c0006t0001g0195 a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0019t0001g0202 a0003c0015t0001g0007 a0003c0015t0001g0008	6	232	0.0259	-3	c.358 others(22): Show c.358+17635_358+17637delCAC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1255416	GGAA GGAA	G G	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02559.hp1 NA21309.hp2 HG01109.hp2 HG02559.hp1 NA21309.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0002 a0001c0005	a0001c0002t0001 a0001c0002t0004 a0001c0005t0001 a0001c0002t0001 a0001c0002t0004 a0001c0005t0001	a0001c0002t0001g0227 a0001c0002t0004g0228 a0001c0005t0001g0113 a0001c0002t0001g0227 a0001c0002t0004g0228 a0001c0005t0001g0113	3	232	0.0129	-3	c.359 others(22): Show c.359-22996_359-22994delGAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22			chr3	TogoVar
CNTN6_chr3_1088024_1409217	1267905	TTGA TTGA	T T	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02559.hp2 HG02572.hp2 others(12): Show HG02145.hp1 HG02559.hp2 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02723.hp2 HG02896.hp1 HG02922.hp2 HG02965.hp2 HG02976.hp1 HG03209.hp1 NA18522.hp1 NA19030.hp2 NA19043.hp2 NA20300.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0005 a0001c0006 a0001c0008 others(5): Show a0001c0005 a0001c0006 a0001c0008 a0001c0010 a0002c0011 a0002c0014 a0002c0017 a0004c0016	a0001c0005t0001 a0001c0006t0001 a0001c0008t0001 others(5): Show a0001c0005t0001 a0001c0006t0001 a0001c0008t0001 a0001c0010t0001 a0002c0011t0001 a0002c0014t0001 a0002c0017t0001 a0004c0016t0001	a0001c0005t0001g0196 a0001c0005t0001g0203 a0001c0006t0001g0111 others(12): Show a0001c0005t0001g0196 a0001c0005t0001g0203 a0001c0006t0001g0111 a0001c0006t0001g0162 a0001c0006t0001g0195 a0001c0006t0001g0213 a0001c0006t0001g0229 a0001c0008t0001g0212 a0001c0010t0001g0206 a0002c0011t0001g0217 a0002c0014t0001g0220 a0002c0014t0001g0232 a0002c0017t0001g0179 a0004c0016t0001g0002 a0004c0016t0001g0003	15	232	0.0647	-3	c.359 others(22): Show c.359-10504_359-10502delTGA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1272725	GCCT GCCT	G G	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02965.hp2 HG03579.hp1 HG02145.hp1 HG02965.hp2 HG03579.hp1	a0001 a0004 a0001 a0004	a0001c0007 a0004c0016 a0001c0007 a0004c0016	a0001c0007t0001 a0004c0016t0001 a0001c0007t0001 a0004c0016t0001	a0001c0007t0001g0012 a0004c0016t0001g0002 a0004c0016t0001g0003 a0001c0007t0001g0012 a0004c0016t0001g0002 a0004c0016t0001g0003	3	232	0.0129	-3	c.359 others(20): Show c.359-5684_359-5682delCCT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1281464	CTTT CTTT	C C	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00639.hp1 HG00642.hp1 others(109): Show HG00609.hp2 HG00639.hp1 HG00642.hp1 HG00642.hp2 HG00733.hp1 HG00735.hp1 HG00738.hp1 HG00738.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01099.hp2 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01169.hp2 HG01175.hp1 HG01255.hp2 HG01256.hp1 HG01258.hp2 HG01261.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01496.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02055.hp1 HG02056.hp1 HG02074.hp1 HG02132.hp2 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02647.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02896.hp2 HG02922.hp1 HG02965.hp2 HG02970.hp2 HG03130.hp2 HG03209.hp1 HG03239.hp1 HG03453.hp2 HG03492.hp1 HG03492.hp2 HG03654.hp2 HG03710.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG04115.hp1 HG04115.hp2 HG04204.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18906.hp2 NA18948.hp1 NA18950.hp1 NA18951.hp2 NA18953.hp1 NA18954.hp2 NA18979.hp1 NA18980.hp1 NA19000.hp2 NA19002.hp2 NA19003.hp2 NA19009.hp1 NA19065.hp1 NA19084.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20905.hp1 NA21309.hp1 NA21309.hp2	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0007	a0001c0001 a0001c0002 a0001c0003 others(17): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0009 a0001c0010 a0001c0012 a0001c0019 a0001c0020 a0001c0021 a0001c0022 a0001c0023 a0001c0025 a0003c0015 a0004c0016 a0007c0018	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(24): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0003 a0001c0002t0005 a0001c0002t0007 a0001c0003t0001 a0001c0004t0001 a0001c0004t0002 a0001c0004t0005 a0001c0005t0001 a0001c0005t0002 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001 a0001c0009t0003 a0001c0010t0001 a0001c0012t0001 a0001c0019t0001 a0001c0020t0001 a0001c0021t0001 a0001c0022t0001 a0001c0023t0001 a0001c0025t0001 a0003c0015t0001 a0004c0016t0001 a0007c0018t0001	a0001c0001t0001g0013 a0001c0001t0001g0024 a0001c0001t0001g0027 others(109): Show a0001c0001t0001g0013 a0001c0001t0001g0024 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0033 a0001c0001t0001g0044 a0001c0001t0001g0054 a0001c0001t0001g0067 a0001c0001t0001g0088 a0001c0001t0001g0093 a0001c0001t0001g0097 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0141 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0156 a0001c0001t0001g0198 a0001c0001t0001g0204 a0001c0001t0002g0124 a0001c0002t0001g0045 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0084 a0001c0002t0001g0094 a0001c0002t0001g0108 a0001c0002t0001g0109 a0001c0002t0001g0116 a0001c0002t0001g0121 a0001c0002t0001g0138 a0001c0002t0001g0145 a0001c0002t0001g0147 a0001c0002t0001g0160 a0001c0002t0001g0174 a0001c0002t0001g0176 a0001c0002t0001g0227 a0001c0002t0003g0069 a0001c0002t0003g0079 a0001c0002t0005g0050 a0001c0002t0007g0059 a0001c0003t0001g0030 a0001c0003t0001g0031 a0001c0003t0001g0064 a0001c0003t0001g0074 a0001c0003t0001g0101 a0001c0003t0001g0118 a0001c0003t0001g0142 a0001c0003t0001g0144 a0001c0003t0001g0154 a0001c0003t0001g0175 a0001c0004t0001g0034 a0001c0004t0001g0041 a0001c0004t0001g0055 a0001c0004t0001g0058 a0001c0004t0001g0060 a0001c0004t0001g0061 a0001c0004t0001g0066 a0001c0004t0001g0073 a0001c0004t0001g0083 a0001c0004t0001g0090 a0001c0004t0001g0103 a0001c0004t0001g0127 a0001c0004t0001g0132 a0001c0004t0002g0038 a0001c0004t0002g0039 a0001c0004t0005g0110 a0001c0005t0001g0004 a0001c0005t0001g0005 a0001c0005t0001g0078 a0001c0005t0001g0106 a0001c0005t0001g0113 a0001c0005t0001g0157 a0001c0005t0001g0163 a0001c0005t0001g0180 a0001c0005t0001g0203 a0001c0005t0001g0215 a0001c0005t0001g0230 a0001c0005t0002g0019 a0001c0005t0002g0115 a0001c0006t0001g0028 a0001c0006t0001g0036 a0001c0006t0001g0037 a0001c0006t0001g0162 a0001c0006t0001g0183 a0001c0006t0001g0184 a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0006t0001g0210 a0001c0007t0001g0052 a0001c0008t0001g0043 a0001c0008t0001g0087 a0001c0008t0001g0120 a0001c0008t0001g0167 a0001c0008t0001g0169 a0001c0008t0001g0214 a0001c0009t0003g0051 a0001c0010t0001g0056 a0001c0012t0001g0085 a0001c0012t0001g0104 a0001c0019t0001g0202 a0001c0020t0001g0151 a0001c0021t0001g0231 a0001c0022t0001g0137 a0001c0023t0001g0186 a0001c0025t0001g0192 a0003c0015t0001g0007 a0003c0015t0001g0008 a0004c0016t0001g0002 a0004c0016t0001g0003 a0007c0018t0001g0148	112	232	0.4828	-3	c.454 others(20): Show c.454+2972_454+2974delTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	5/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1289676	GTTT GTTT	G G	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01884.hp1 HG01884.hp2 others(38): Show HG01167.hp2 HG01884.hp1 HG01884.hp2 HG01952.hp2 HG02055.hp1 HG02109.hp2 HG02145.hp2 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02451.hp1 HG02486.hp2 HG02559.hp1 HG02615.hp1 HG02615.hp2 HG02630.hp2 HG02647.hp2 HG02717.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02976.hp1 HG02976.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03225.hp2 HG03453.hp1 HG03471.hp1 HG03471.hp2 HG03579.hp1 HG03579.hp2 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA20129.hp2 NA20300.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0005 others(11): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0013 a0001c0019 a0001c0021 a0001c0025 a0002c0011 a0002c0014 a0002c0017 a0003c0015	a0001c0001t0001 a0001c0002t0001 a0001c0002t0004 others(15): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0004 a0001c0002t0008 a0001c0005t0001 a0001c0005t0004 a0001c0006t0001 a0001c0006t0004 a0001c0007t0001 a0001c0008t0001 a0001c0013t0001 a0001c0019t0001 a0001c0021t0001 a0001c0025t0001 a0002c0011t0001 a0002c0014t0001 a0002c0017t0001 a0003c0015t0001	a0001c0001t0001g0190 a0001c0002t0001g0209 a0001c0002t0004g0228 others(38): Show a0001c0001t0001g0190 a0001c0002t0001g0209 a0001c0002t0004g0228 a0001c0002t0008g0221 a0001c0005t0001g0159 a0001c0005t0001g0182 a0001c0005t0001g0188 a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0005t0001g0196 a0001c0005t0001g0207 a0001c0005t0001g0230 a0001c0005t0004g0194 a0001c0006t0001g0037 a0001c0006t0001g0111 a0001c0006t0001g0183 a0001c0006t0001g0201 a0001c0006t0001g0213 a0001c0006t0001g0216 a0001c0006t0001g0223 a0001c0006t0001g0229 a0001c0006t0004g0119 a0001c0007t0001g0012 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0135 a0001c0008t0001g0143 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0218 a0001c0013t0001g0199 a0001c0019t0001g0202 a0001c0021t0001g0231 a0001c0025t0001g0192 a0002c0011t0001g0006 a0002c0011t0001g0217 a0002c0014t0001g0220 a0002c0014t0001g0232 a0002c0017t0001g0179 a0003c0015t0001g0007 a0003c0015t0001g0008	41	232	0.1767	-3	c.455 others(20): Show c.455-5911_455-5909delTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	5/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1312192	CTAA CTAA	C C	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG02622.hp2 HG00738.hp2 HG02622.hp2	a0001 a0001	a0001c0006 a0001c0022 a0001c0006 a0001c0022	a0001c0006t0002 a0001c0022t0001 a0001c0006t0002 a0001c0022t0001	a0001c0006t0002g0178 a0001c0022t0001g0137 a0001c0006t0002g0178 a0001c0022t0001g0137	2	232	0.0086	-3	c.762 others(20): Show c.762-9456_762-9454delAAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1312614	CAAA CAAA	C C	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01884.hp1 HG02074.hp1 others(17): Show HG00733.hp2 HG01884.hp1 HG02074.hp1 HG02257.hp2 HG02572.hp1 HG02809.hp2 HG02965.hp1 HG02970.hp1 HG03130.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp2 HG03453.hp1 HG03669.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0009 a0001c0021	a0001c0001t0001 a0001c0002t0001 a0001c0002t0008 others(7): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0008 a0001c0003t0001 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001 a0001c0009t0001 a0001c0021t0001	a0001c0001t0001g0198 a0001c0002t0001g0084 a0001c0002t0001g0098 others(17): Show a0001c0001t0001g0198 a0001c0002t0001g0084 a0001c0002t0001g0098 a0001c0002t0008g0221 a0001c0003t0001g0042 a0001c0003t0001g0177 a0001c0005t0001g0005 a0001c0005t0001g0215 a0001c0006t0001g0111 a0001c0006t0001g0162 a0001c0006t0001g0229 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0135 a0001c0008t0001g0010 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0218 a0001c0009t0001g0114 a0001c0021t0001g0231	20	232	0.0862	-3	c.762 others(20): Show c.762-9022_762-9020delAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1334376	ATTT ATTT	A A	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG02055.hp1 HG02258.hp1 others(3): Show HG01169.hp2 HG02055.hp1 HG02258.hp1 HG03130.hp2 HG03453.hp2 NA18522.hp2	a0001 a0003 a0001 a0003	a0001c0006 a0001c0019 a0001c0025 others(1): Show a0001c0006 a0001c0019 a0001c0025 a0003c0015	a0001c0006t0001 a0001c0019t0001 a0001c0025t0001 others(1): Show a0001c0006t0001 a0001c0019t0001 a0001c0025t0001 a0003c0015t0001	a0001c0006t0001g0184 a0001c0006t0001g0200 a0001c0019t0001g0202 others(3): Show a0001c0006t0001g0184 a0001c0006t0001g0200 a0001c0019t0001g0202 a0001c0025t0001g0192 a0003c0015t0001g0007 a0003c0015t0001g0008	6	232	0.0259	-3	c.136 others(22): Show c.1364+4455_1364+4457delTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1348574	AATT AATT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02965.hp1 HG02970.hp1 others(6): Show HG01884.hp1 HG02965.hp1 HG02970.hp1 HG03130.hp1 HG03139.hp2 HG03195.hp2 HG03453.hp1 NA18906.hp1 NA20300.hp2	a0001 a0001	a0001c0003 a0001c0006 a0001c0007 others(1): Show a0001c0003 a0001c0006 a0001c0007 a0001c0008	a0001c0003t0001 a0001c0006t0001 a0001c0007t0001 others(1): Show a0001c0003t0001 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001	a0001c0003t0001g0042 a0001c0006t0001g0229 a0001c0007t0001g0133 others(6): Show a0001c0003t0001g0042 a0001c0006t0001g0229 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0135 a0001c0008t0001g0010 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0218	9	232	0.0388	-3	c.136 others(22): Show c.1365-3747_1365-3745delTAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1353823	ATCT ATCT	A A	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02257.hp2 HG02280.hp1 others(9): Show HG02109.hp2 HG02257.hp2 HG02280.hp1 HG02451.hp1 HG02622.hp1 HG02647.hp2 HG02723.hp1 HG02976.hp2 HG03471.hp2 HG06807.hp2 NA18522.hp2 NA19043.hp1	a0001 a0001	a0001c0005 a0001c0006 a0001c0008 others(5): Show a0001c0005 a0001c0006 a0001c0008 a0001c0013 a0001c0019 a0001c0020 a0001c0021 a0001c0023	a0001c0005t0001 a0001c0005t0004 a0001c0006t0001 others(6): Show a0001c0005t0001 a0001c0005t0004 a0001c0006t0001 a0001c0008t0001 a0001c0013t0001 a0001c0019t0001 a0001c0020t0001 a0001c0021t0001 a0001c0023t0001	a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0005t0001g0207 others(9): Show a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0005t0001g0207 a0001c0005t0004g0194 a0001c0006t0001g0037 a0001c0006t0001g0216 a0001c0008t0001g0143 a0001c0013t0001g0199 a0001c0019t0001g0202 a0001c0020t0001g0151 a0001c0021t0001g0231 a0001c0023t0001g0186	12	232	0.0517	-3	c.149 others(22): Show c.1492+1376_1492+1378delTCT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	12/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1381325	TTTG TTTG	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00738.hp1 HG00741.hp1 others(18): Show HG00140.hp2 HG00738.hp1 HG00741.hp1 HG01106.hp1 HG01123.hp2 HG01255.hp1 HG01256.hp2 HG01258.hp1 HG01361.hp1 HG01496.hp1 HG01517.hp2 HG02027.hp1 HG02738.hp1 HG02738.hp2 HG02922.hp1 HG03453.hp2 HG03471.hp1 HG03654.hp1 HG03710.hp1 NA18747.hp2 NA18972.hp1	a0001 a0001	a0001c0005 a0001c0006 a0001c0007 others(1): Show a0001c0005 a0001c0006 a0001c0007 a0001c0008	a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 others(3): Show a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0007t0002 a0001c0007t0006 a0001c0008t0001	a0001c0005t0001g0159 a0001c0006t0001g0184 a0001c0007t0001g0001 others(18): Show a0001c0005t0001g0159 a0001c0006t0001g0184 a0001c0007t0001g0001 a0001c0007t0001g0014 a0001c0007t0001g0015 a0001c0007t0001g0017 a0001c0007t0001g0048 a0001c0007t0001g0052 a0001c0007t0001g0100 a0001c0007t0001g0102 a0001c0007t0001g0146 a0001c0007t0001g0155 a0001c0007t0002g0032 a0001c0007t0006g0170 a0001c0008t0001g0043 a0001c0008t0001g0075 a0001c0008t0001g0087 a0001c0008t0001g0120 a0001c0008t0001g0167 a0001c0008t0001g0169 a0001c0008t0001g0214	21	232	0.0905	-3	c.216 others(22): Show c.2167-1611_2167-1609delGTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	17/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1384076	ATAG ATAG	A A	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02717.hp2 HG02723.hp2 HG02647.hp1 HG02717.hp2 HG02723.hp2	a0001 a0001	a0001c0005 a0001c0006 a0001c0005 a0001c0006	a0001c0005t0001 a0001c0006t0001 a0001c0005t0001 a0001c0006t0001	a0001c0005t0001g0163 a0001c0005t0001g0203 a0001c0006t0001g0223 a0001c0005t0001g0163 a0001c0005t0001g0203 a0001c0006t0001g0223	3	232	0.0129	-3	c.251 others(20): Show c.2517+672_2517+674delTAG	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	19/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1395128	TAAG TAAG	T T	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02647.hp1 HG02976.hp2 others(2): Show HG02559.hp2 HG02647.hp1 HG02976.hp2 HG03139.hp2 NA18906.hp1	a0001 a0001	a0001c0005 a0001c0008 a0001c0005 a0001c0008	a0001c0005t0001 a0001c0008t0001 a0001c0005t0001 a0001c0008t0001	a0001c0005t0001g0163 a0001c0008t0001g0010 a0001c0008t0001g0143 others(2): Show a0001c0005t0001g0163 a0001c0008t0001g0010 a0001c0008t0001g0143 a0001c0008t0001g0211 a0001c0008t0001g0212	5	232	0.0216	-3	c.270 others(22): Show c.2705-6299_2705-6297delGAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	20/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1400485	GACA GACA	G G	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01109.hp1 HG01109.hp2 others(22): Show HG01074.hp1 HG01109.hp1 HG01109.hp2 HG01255.hp2 HG01258.hp2 HG01496.hp1 HG02055.hp2 HG02486.hp2 HG02896.hp2 HG03130.hp2 HG03225.hp1 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp2 HG03834.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA19043.hp1 NA20300.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0013 a0001c0025 a0002c0011	a0001c0001t0001 a0001c0002t0001 a0001c0002t0009 others(8): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0009 a0001c0003t0001 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001 a0001c0013t0001 a0001c0025t0001 a0002c0011t0001	a0001c0001t0001g0067 a0001c0001t0001g0082 a0001c0001t0001g0088 others(22): Show a0001c0001t0001g0067 a0001c0001t0001g0082 a0001c0001t0001g0088 a0001c0001t0001g0093 a0001c0001t0001g0190 a0001c0002t0001g0099 a0001c0002t0001g0227 a0001c0002t0009g0205 a0001c0003t0001g0030 a0001c0005t0001g0106 a0001c0005t0001g0113 a0001c0005t0001g0157 a0001c0005t0001g0159 a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0006t0001g0184 a0001c0006t0001g0210 a0001c0006t0001g0229 a0001c0007t0001g0012 a0001c0007t0001g0222 a0001c0008t0001g0169 a0001c0013t0001g0199 a0001c0013t0001g0208 a0001c0025t0001g0192 a0002c0011t0001g0006	25	232	0.1078	-3	c.270 others(20): Show c.2705-944_2705-942delACA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	20/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1405146	CTAT CTAT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02055.hp1 HG02258.hp1 HG02055.hp1 HG02258.hp1	a0003 a0003	a0003c0015 a0003c0015	a0003c0015t0001 a0003c0015t0001	a0003c0015t0001g0007 a0003c0015t0001g0008 a0003c0015t0001g0007 a0003c0015t0001g0008	2	232	0.0086	-3	c.17 others(14): Show c.1729_*1731delTAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding		930		chr3	TogoVar
CNTNAP1_chr17_42677531_42704993	42677534	GAGA GAGA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp2 HG01167.hp2 HG01169.hp2 others(19): Show HG01109.hp2 HG01167.hp2 HG01169.hp2 HG01243.hp2 HG02145.hp1 HG02451.hp1 HG02572.hp1 HG02630.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02970.hp2 HG03041.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03579.hp1 NA19043.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0002 a0001c0010 a0001c0011 others(4): Show a0001c0002 a0001c0010 a0001c0011 a0002c0003 a0002c0006 a0002c0007 a0004c0008	a0001c0002t0001 a0001c0010t0001 a0001c0011t0001 others(4): Show a0001c0002t0001 a0001c0010t0001 a0001c0011t0001 a0002c0003t0001 a0002c0006t0001 a0002c0007t0001 a0004c0008t0001	a0001c0002t0001g0191 a0001c0002t0001g0192 a0001c0010t0001g0104 others(13): Show a0001c0002t0001g0191 a0001c0002t0001g0192 a0001c0010t0001g0104 a0001c0011t0001g0193 a0002c0003t0001g0011 a0002c0003t0001g0028 a0002c0003t0001g0045 a0002c0003t0001g0188 a0002c0003t0001g0189 a0002c0003t0001g0190 a0002c0003t0001g0195 a0002c0003t0001g0197 a0002c0003t0001g0198 a0002c0006t0001g0045 a0002c0007t0001g0196 a0004c0008t0001g0194	22	364	0.0604	-3	c.-52 others(14): Show c.-5295_-5293delAGA	CNTNAP1	ENSG00000108797.12	transcript	ENST00000264638.9	protein_coding		4996		chr17	TogoVar
CNTNAP2_chr7_146111801_148425998	146114863	GTAT GTAT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp2 HG02486.hp1 HG02896.hp1 others(4): Show HG00735.hp2 HG02486.hp1 HG02896.hp1 HG02976.hp2 HG03139.hp2 NA18522.hp2 NA21309.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0003 a0001c0010 others(3): Show a0001c0001 a0001c0003 a0001c0010 a0001c0011 a0001c0019 a0005c0020	a0001c0001t0007 a0001c0003t0020 a0001c0010t0002 others(3): Show a0001c0001t0007 a0001c0003t0020 a0001c0010t0002 a0001c0011t0016 a0001c0019t0006 a0005c0020t0005	a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0003t0020g0017 others(4): Show a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0003t0020g0017 a0001c0010t0002g0014 a0001c0011t0016g0019 a0001c0019t0006g0015 a0005c0020t0005g0016	7	40	0.1750	-3	c.-20 others(14): Show c.-2013_-2011delTAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding		1937		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146155685	CATT CATT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG01891.hp2 others(14): Show HG00735.hp2 HG01891.hp1 HG01891.hp2 HG02486.hp1 HG02630.hp1 HG02630.hp2 HG02717.hp2 HG02886.hp1 HG02896.hp1 HG02897.hp1 HG02976.hp2 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp1 HG03225.hp2 NA19030.hp2	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0005	a0001c0001 a0001c0002 a0001c0003 others(10): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0008 a0001c0009 a0001c0011 a0001c0012 a0001c0018 a0001c0019 a0002c0016 a0004c0014 a0005c0020	a0001c0001t0006 a0001c0001t0007 a0001c0002t0001 others(13): Show a0001c0001t0006 a0001c0001t0007 a0001c0002t0001 a0001c0002t0002 a0001c0003t0013 a0001c0003t0020 a0001c0005t0008 a0001c0008t0001 a0001c0009t0019 a0001c0011t0016 a0001c0012t0004 a0001c0018t0002 a0001c0019t0006 a0002c0016t0004 a0004c0014t0021 a0005c0020t0005	a0001c0001t0006g0009 a0001c0001t0007g0020 a0001c0002t0001g0008 others(14): Show a0001c0001t0006g0009 a0001c0001t0007g0020 a0001c0002t0001g0008 a0001c0002t0001g0021 a0001c0002t0002g0013 a0001c0003t0013g0010 a0001c0003t0020g0017 a0001c0005t0008g0005 a0001c0008t0001g0025 a0001c0009t0019g0027 a0001c0011t0016g0019 a0001c0012t0004g0026 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0016t0004g0024 a0004c0014t0021g0022 a0005c0020t0005g0016	17	40	0.4250	-3	c.97+ others(20): Show c.97+38740_97+38742delATT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146172032	ATTT ATTT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG02486.hp1 others(7): Show HG00735.hp2 HG01891.hp1 HG02486.hp1 HG02486.hp2 HG02896.hp1 HG02976.hp2 HG03098.hp2 HG03139.hp2 NA18522.hp2 NA21309.hp1	a0001 a0004 a0005 a0001 a0004 a0005	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0010 a0001c0011 a0001c0019 a0004c0014 a0005c0020	a0001c0001t0007 a0001c0002t0001 a0001c0003t0011 others(6): Show a0001c0001t0007 a0001c0002t0001 a0001c0003t0011 a0001c0003t0020 a0001c0010t0002 a0001c0011t0016 a0001c0019t0006 a0004c0014t0021 a0005c0020t0005	a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0002t0001g0021 others(7): Show a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0002t0001g0021 a0001c0003t0011g0023 a0001c0003t0020g0017 a0001c0010t0002g0014 a0001c0011t0016g0019 a0001c0019t0006g0015 a0004c0014t0021g0022 a0005c0020t0005g0016	10	40	0.2500	-3	c.97+ others(20): Show c.97+55081_97+55083delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146176094	ACTT ACTT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp1 NA19030.hp2 HG02630.hp1 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0012 a0002c0016 a0001c0012 a0002c0016	a0001c0012t0004 a0002c0016t0004 a0001c0012t0004 a0002c0016t0004	a0001c0012t0004g0026 a0002c0016t0004g0024 a0001c0012t0004g0026 a0002c0016t0004g0024	2	40	0.0500	-3	c.97+ others(20): Show c.97+59128_97+59130delCTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146183606	AAAT AAAT	A A	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02630.hp2 HG02896.hp2 others(1): Show HG02486.hp2 HG02630.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0004 a0001c0002 a0001c0003 a0001c0004	a0001c0002t0002 a0001c0003t0011 a0001c0004t0003 a0001c0002t0002 a0001c0003t0011 a0001c0004t0003	a0001c0002t0002g0013 a0001c0003t0011g0023 a0001c0004t0003g0035 others(1): Show a0001c0002t0002g0013 a0001c0003t0011g0023 a0001c0004t0003g0035 a0001c0004t0003g0036	4	40	0.1000	-3	c.97+ others(20): Show c.97+66666_97+66668delTAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146225578	CCTT CCTT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02886.hp1 HG02897.hp1 HG01891.hp2 HG02886.hp1 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0006 a0001c0002t0001 a0001c0003t0013 a0001c0001t0006 a0001c0002t0001 a0001c0003t0013	a0001c0001t0006g0009 a0001c0002t0001g0008 a0001c0003t0013g0010 a0001c0001t0006g0009 a0001c0002t0001g0008 a0001c0003t0013g0010	3	40	0.0750	-3	c.97+ others(22): Show c.97+108608_97+108610delTCT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146247805	GAGA GAGA	G G	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0003g0035 a0001c0004t0003g0036	2	40	0.0500	-3	c.97+ others(22): Show c.97+130838_97+130840delAAG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146252886	AATG AATG	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG01891.hp1 others(20): Show HG00735.hp1 HG00735.hp2 HG01891.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02630.hp1 HG02717.hp1 HG02717.hp2 HG02896.hp1 HG02897.hp1 HG02922.hp1 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03098.hp2 HG03225.hp2 HG03540.hp1 HG03540.hp2 NA19030.hp1 NA19030.hp2 NA21309.hp2	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0005	a0001c0001 a0001c0002 a0001c0003 others(11): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0012 a0001c0015 a0001c0018 a0001c0019 a0002c0016 a0002c0017 a0004c0014 a0005c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0001t0012 a0001c0001t0018 a0001c0002t0001 a0001c0002t0010 a0001c0003t0004 a0001c0003t0020 a0001c0004t0005 a0001c0005t0008 a0001c0006t0014 a0001c0012t0004 a0001c0015t0001 a0001c0018t0002 a0001c0019t0006 a0002c0016t0004 a0002c0017t0015 a0004c0014t0021 a0005c0020t0005	a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0002g0006 others(20): Show a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0002g0006 a0001c0001t0007g0020 a0001c0001t0012g0034 a0001c0001t0018g0001 a0001c0002t0001g0007 a0001c0002t0001g0008 a0001c0002t0001g0021 a0001c0002t0010g0002 a0001c0003t0004g0029 a0001c0003t0020g0017 a0001c0004t0005g0004 a0001c0005t0008g0005 a0001c0006t0014g0033 a0001c0012t0004g0026 a0001c0015t0001g0011 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0016t0004g0024 a0002c0017t0015g0037 a0004c0014t0021g0022 a0005c0020t0005g0016	23	40	0.5750	-3	c.97+ others(22): Show c.97+135916_97+135918delGAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146266886	ATTT ATTT	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02886.hp1 HG02896.hp2 others(7): Show HG01891.hp2 HG02886.hp1 HG02896.hp2 HG02897.hp2 HG02976.hp1 HG03139.hp1 HG03225.hp2 NA18522.hp1 NA19030.hp2 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0004 others(5): Show a0001c0001 a0001c0003 a0001c0004 a0001c0008 a0001c0013 a0001c0015 a0001c0018 a0002c0016	a0001c0001t0006 a0001c0003t0013 a0001c0003t0023 others(6): Show a0001c0001t0006 a0001c0003t0013 a0001c0003t0023 a0001c0004t0003 a0001c0008t0001 a0001c0013t0003 a0001c0015t0001 a0001c0018t0002 a0002c0016t0004	a0001c0001t0006g0009 a0001c0003t0013g0010 a0001c0003t0023g0030 others(7): Show a0001c0001t0006g0009 a0001c0003t0013g0010 a0001c0003t0023g0030 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0008t0001g0025 a0001c0013t0003g0039 a0001c0015t0001g0011 a0001c0018t0002g0012 a0002c0016t0004g0024	10	40	0.2500	-3	c.97+ others(22): Show c.97+149931_97+149933delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146269351	CAAT CAAT	C C	intron_variant intron_variant	MODIFIER	HG02897.hp1 NA20129.hp2 HG02897.hp1 NA20129.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0003t0023 a0001c0002t0001 a0001c0003t0023	a0001c0002t0001g0008 a0001c0003t0023g0030 a0001c0002t0001g0008 a0001c0003t0023g0030	2	40	0.0500	-3	c.97+ others(22): Show c.97+152379_97+152381delAAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23			chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146279962	TATC TATC	T T	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG03540.hp1 HG02486.hp2 HG03540.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0010 a0001c0003t0011 a0001c0002t0010 a0001c0003t0011	a0001c0002t0010g0002 a0001c0003t0011g0023 a0001c0002t0010g0002 a0001c0003t0011g0023	2	40	0.0500	-3	c.97+ others(22): Show c.97+162992_97+162994delCAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146288793	ATTT ATTT	A A	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02630.hp1 HG03225.hp1 others(1): Show HG02486.hp2 HG02630.hp1 HG03225.hp1 HG03540.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0009 others(1): Show a0001c0002 a0001c0003 a0001c0009 a0001c0012	a0001c0002t0010 a0001c0003t0011 a0001c0009t0019 others(1): Show a0001c0002t0010 a0001c0003t0011 a0001c0009t0019 a0001c0012t0004	a0001c0002t0010g0002 a0001c0003t0011g0023 a0001c0009t0019g0027 others(1): Show a0001c0002t0010g0002 a0001c0003t0011g0023 a0001c0009t0019g0027 a0001c0012t0004g0026	4	40	0.1000	-3	c.97+ others(22): Show c.97+171847_97+171849delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146320922	TATA TATA	T T	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02451.hp1 HG03139.hp2 others(1): Show HG01891.hp1 HG02451.hp1 HG03139.hp2 HG03225.hp1	a0001 a0004 a0001 a0004	a0001c0002 a0001c0009 a0001c0011 others(1): Show a0001c0002 a0001c0009 a0001c0011 a0004c0014	a0001c0002t0001 a0001c0009t0019 a0001c0011t0016 others(1): Show a0001c0002t0001 a0001c0009t0019 a0001c0011t0016 a0004c0014t0021	a0001c0002t0001g0007 a0001c0009t0019g0027 a0001c0011t0016g0019 others(1): Show a0001c0002t0001g0007 a0001c0009t0019g0027 a0001c0011t0016g0019 a0004c0014t0021g0022	4	40	0.1000	-3	c.97+ others(22): Show c.97+203953_97+203955delATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar

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