Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
CNTNAP2_chr7_146111801_148425998	146347138	TAAA TAAA	T T	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02896.hp2 HG02897.hp1 others(7): Show HG01891.hp2 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG03098.hp2 HG03139.hp1 HG03225.hp1 NA20129.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0008 a0001c0009 a0001c0010	a0001c0001t0006 a0001c0001t0012 a0001c0002t0001 others(5): Show a0001c0001t0006 a0001c0001t0012 a0001c0002t0001 a0001c0003t0023 a0001c0004t0003 a0001c0008t0001 a0001c0009t0019 a0001c0010t0002	a0001c0001t0006g0009 a0001c0001t0012g0034 a0001c0002t0001g0008 others(7): Show a0001c0001t0006g0009 a0001c0001t0012g0034 a0001c0002t0001g0008 a0001c0002t0001g0021 a0001c0003t0023g0030 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0008t0001g0025 a0001c0009t0019g0027 a0001c0010t0002g0014	10	40	0.2500	-3	c.97+ others(22): Show c.97+230186_97+230188delAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146380784	CTTT CTTT	C C	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02896.hp1 NA18522.hp1 others(2): Show HG02717.hp1 HG02896.hp1 NA18522.hp1 NA19030.hp2 NA21309.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0013 a0002c0016 others(2): Show a0001c0001 a0001c0013 a0002c0016 a0002c0017 a0005c0020	a0001c0001t0018 a0001c0013t0003 a0002c0016t0004 others(2): Show a0001c0001t0018 a0001c0013t0003 a0002c0016t0004 a0002c0017t0015 a0005c0020t0005	a0001c0001t0018g0001 a0001c0013t0003g0039 a0002c0016t0004g0024 others(2): Show a0001c0001t0018g0001 a0001c0013t0003g0039 a0002c0016t0004g0024 a0002c0017t0015g0037 a0005c0020t0005g0016	5	40	0.1250	-3	c.97+ others(22): Show c.97+263842_97+263844delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146391750	TTTG TTTG	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02451.hp2 HG02486.hp1 others(10): Show HG00735.hp2 HG02451.hp2 HG02486.hp1 HG02717.hp2 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG02976.hp2 HG03098.hp1 NA19030.hp1 NA21309.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0010 a0001c0019	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0001t0018 a0001c0002t0001 a0001c0003t0020 a0001c0004t0003 a0001c0004t0005 a0001c0005t0008 a0001c0010t0002 a0001c0019t0006	a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0002g0006 others(10): Show a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0002g0006 a0001c0001t0007g0020 a0001c0001t0018g0001 a0001c0002t0001g0008 a0001c0003t0020g0017 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0005g0004 a0001c0005t0008g0005 a0001c0010t0002g0014 a0001c0019t0006g0015	13	40	0.3250	-3	c.97+ others(22): Show c.97+274802_97+274804delTTG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146395776	AGAT AGAT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02976.hp1 HG03139.hp1 others(1): Show HG02630.hp2 HG02976.hp1 HG03139.hp1 HG03139.hp2	a0001 a0001	a0001c0002 a0001c0008 a0001c0011 others(1): Show a0001c0002 a0001c0008 a0001c0011 a0001c0015	a0001c0002t0002 a0001c0008t0001 a0001c0011t0016 others(1): Show a0001c0002t0002 a0001c0008t0001 a0001c0011t0016 a0001c0015t0001	a0001c0002t0002g0013 a0001c0008t0001g0025 a0001c0011t0016g0019 others(1): Show a0001c0002t0002g0013 a0001c0008t0001g0025 a0001c0011t0016g0019 a0001c0015t0001g0011	4	40	0.1000	-3	c.97+ others(22): Show c.97+278807_97+278809delGAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146395823	AGAG AGAG	A A	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02717.hp2 HG03098.hp1 others(1): Show HG02451.hp2 HG02717.hp2 HG03098.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0010 a0001c0001 a0001c0005 a0001c0010	a0001c0001t0001 a0001c0001t0002 a0001c0005t0008 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0005t0008 a0001c0010t0002	a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0005t0008g0005 others(1): Show a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0005t0008g0005 a0001c0010t0002g0014	4	40	0.1000	-3	c.97+ others(22): Show c.97+278854_97+278856delGAG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146426877	CAAT CAAT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG02451.hp2 others(25): Show HG00735.hp2 HG01891.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02717.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03139.hp1 HG03139.hp2 HG03225.hp2 HG03540.hp1 NA18522.hp1 NA19030.hp1 NA19030.hp2 NA20129.hp1 NA20129.hp2	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0005	a0001c0001 a0001c0002 a0001c0003 others(14): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0008 a0001c0011 a0001c0012 a0001c0013 a0001c0015 a0001c0018 a0001c0019 a0002c0016 a0002c0017 a0004c0014 a0005c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(23): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0002t0001 a0001c0002t0002 a0001c0002t0010 a0001c0003t0011 a0001c0003t0013 a0001c0003t0020 a0001c0003t0023 a0001c0004t0003 a0001c0004t0005 a0001c0005t0008 a0001c0005t0022 a0001c0006t0009 a0001c0008t0001 a0001c0011t0016 a0001c0012t0004 a0001c0013t0003 a0001c0015t0001 a0001c0018t0002 a0001c0019t0006 a0002c0016t0004 a0002c0017t0015 a0004c0014t0021 a0005c0020t0005	a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0002g0006 others(25): Show a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0002g0006 a0001c0001t0007g0020 a0001c0002t0001g0008 a0001c0002t0002g0013 a0001c0002t0010g0002 a0001c0003t0011g0023 a0001c0003t0013g0010 a0001c0003t0020g0017 a0001c0003t0023g0030 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0005g0004 a0001c0005t0008g0005 a0001c0005t0022g0032 a0001c0006t0009g0028 a0001c0008t0001g0025 a0001c0011t0016g0019 a0001c0012t0004g0026 a0001c0013t0003g0039 a0001c0015t0001g0011 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0016t0004g0024 a0002c0017t0015g0037 a0004c0014t0021g0022 a0005c0020t0005g0016	28	40	0.7000	-3	c.97+ others(22): Show c.97+309910_97+309912delTAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146442431	TTGG TTGG	T T	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG03225.hp2 NA19030.hp2 HG02886.hp1 HG03225.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0001c0018 a0002c0016 a0001c0003 a0001c0018 a0002c0016	a0001c0003t0013 a0001c0018t0002 a0002c0016t0004 a0001c0003t0013 a0001c0018t0002 a0002c0016t0004	a0001c0003t0013g0010 a0001c0018t0002g0012 a0002c0016t0004g0024 a0001c0003t0013g0010 a0001c0018t0002g0012 a0002c0016t0004g0024	3	40	0.0750	-3	c.97+ others(22): Show c.97+325459_97+325461delTGG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146464185	CTGT CTGT	C C	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02630.hp2 HG02976.hp1 others(4): Show HG02486.hp2 HG02630.hp2 HG02976.hp1 HG03139.hp1 HG03540.hp1 NA20129.hp1 NA20129.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0006 others(2): Show a0001c0002 a0001c0003 a0001c0006 a0001c0008 a0001c0015	a0001c0002t0002 a0001c0002t0010 a0001c0003t0011 others(4): Show a0001c0002t0002 a0001c0002t0010 a0001c0003t0011 a0001c0003t0023 a0001c0006t0009 a0001c0008t0001 a0001c0015t0001	a0001c0002t0002g0013 a0001c0002t0010g0002 a0001c0003t0011g0023 others(4): Show a0001c0002t0002g0013 a0001c0002t0010g0002 a0001c0003t0011g0023 a0001c0003t0023g0030 a0001c0006t0009g0028 a0001c0008t0001g0025 a0001c0015t0001g0011	7	40	0.1750	-3	c.98- others(22): Show c.98-310084_98-310082delGTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146464187	GTTT GTTT	G G	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02896.hp1 HG02897.hp1 others(3): Show HG02717.hp1 HG02896.hp1 HG02897.hp1 HG02922.hp2 HG03225.hp2 NA18522.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0002 a0001c0004 a0001c0013 others(3): Show a0001c0002 a0001c0004 a0001c0013 a0001c0018 a0002c0017 a0005c0020	a0001c0002t0001 a0001c0004t0005 a0001c0013t0003 others(3): Show a0001c0002t0001 a0001c0004t0005 a0001c0013t0003 a0001c0018t0002 a0002c0017t0015 a0005c0020t0005	a0001c0002t0001g0008 a0001c0004t0005g0004 a0001c0013t0003g0039 others(3): Show a0001c0002t0001g0008 a0001c0004t0005g0004 a0001c0013t0003g0039 a0001c0018t0002g0012 a0002c0017t0015g0037 a0005c0020t0005g0016	6	40	0.1500	-3	c.98- others(22): Show c.98-310067_98-310065delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146484995	TATA TATA	T T	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0003g0035 a0001c0004t0003g0036	2	40	0.0500	-3	c.98- others(22): Show c.98-289270_98-289268delAAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146529965	AAAC AAAC	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02451.hp1 HG02451.hp2 others(5): Show HG01891.hp2 HG02451.hp1 HG02451.hp2 HG02630.hp2 HG02896.hp1 HG02976.hp1 HG03139.hp1 NA21309.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0008 others(3): Show a0001c0001 a0001c0002 a0001c0008 a0001c0010 a0001c0015 a0005c0020	a0001c0001t0002 a0001c0001t0006 a0001c0002t0001 others(5): Show a0001c0001t0002 a0001c0001t0006 a0001c0002t0001 a0001c0002t0002 a0001c0008t0001 a0001c0010t0002 a0001c0015t0001 a0005c0020t0005	a0001c0001t0002g0006 a0001c0001t0006g0009 a0001c0002t0001g0007 others(5): Show a0001c0001t0002g0006 a0001c0001t0006g0009 a0001c0002t0001g0007 a0001c0002t0002g0013 a0001c0008t0001g0025 a0001c0010t0002g0014 a0001c0015t0001g0011 a0005c0020t0005g0016	8	40	0.2000	-3	c.98- others(22): Show c.98-244276_98-244274delCAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146533107	CAAA CAAA	C C	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02886.hp1 HG02922.hp2 others(3): Show HG02717.hp2 HG02886.hp1 HG02922.hp2 HG02976.hp2 HG03239.hp1 NA21309.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0003 a0001c0004 others(2): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005 a0003c0007	a0001c0001t0018 a0001c0003t0013 a0001c0003t0020 others(3): Show a0001c0001t0018 a0001c0003t0013 a0001c0003t0020 a0001c0004t0005 a0001c0005t0008 a0003c0007t0017	a0001c0001t0018g0001 a0001c0003t0013g0010 a0001c0003t0020g0017 others(3): Show a0001c0001t0018g0001 a0001c0003t0013g0010 a0001c0003t0020g0017 a0001c0004t0005g0004 a0001c0005t0008g0005 a0003c0007t0017g0031	6	40	0.1500	-3	c.98- others(22): Show c.98-241138_98-241136delAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146535138	ATAT ATAT	A A	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02630.hp1 HG01891.hp1 HG02630.hp1	a0001 a0004 a0001 a0004	a0001c0012 a0004c0014 a0001c0012 a0004c0014	a0001c0012t0004 a0004c0014t0021 a0001c0012t0004 a0004c0014t0021	a0001c0012t0004g0026 a0004c0014t0021g0022 a0001c0012t0004g0026 a0004c0014t0021g0022	2	40	0.0500	-3	c.98- others(22): Show c.98-239129_98-239127delTAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146535194	TATC TATC	T T	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02630.hp1 HG01891.hp1 HG02630.hp1	a0001 a0004 a0001 a0004	a0001c0012 a0004c0014 a0001c0012 a0004c0014	a0001c0012t0004 a0004c0014t0021 a0001c0012t0004 a0004c0014t0021	a0001c0012t0004g0026 a0004c0014t0021g0022 a0001c0012t0004g0026 a0004c0014t0021g0022	2	40	0.0500	-3	c.98- others(22): Show c.98-239074_98-239072delCAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146535275	ATAT ATAT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02486.hp1 HG02886.hp1 others(4): Show HG00735.hp2 HG02486.hp1 HG02886.hp1 HG02922.hp1 NA18522.hp1 NA19030.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0013 others(1): Show a0001c0001 a0001c0003 a0001c0013 a0001c0019	a0001c0001t0001 a0001c0001t0007 a0001c0001t0012 others(4): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0012 a0001c0003t0013 a0001c0003t0023 a0001c0013t0003 a0001c0019t0006	a0001c0001t0001g0038 a0001c0001t0007g0020 a0001c0001t0012g0034 others(4): Show a0001c0001t0001g0038 a0001c0001t0007g0020 a0001c0001t0012g0034 a0001c0003t0013g0010 a0001c0003t0023g0030 a0001c0013t0003g0039 a0001c0019t0006g0015	7	40	0.1750	-3	c.98- others(22): Show c.98-238992_98-238990delTAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146535302	TATG TATG	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02486.hp1 HG02922.hp1 others(5): Show HG00735.hp2 HG02486.hp1 HG02922.hp1 HG03098.hp1 HG03239.hp1 NA18522.hp1 NA19030.hp1 NA20129.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0003 a0001c0013 others(2): Show a0001c0001 a0001c0003 a0001c0013 a0001c0019 a0003c0007	a0001c0001t0001 a0001c0001t0007 a0001c0001t0012 others(4): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0012 a0001c0003t0023 a0001c0013t0003 a0001c0019t0006 a0003c0007t0017	a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0007g0020 others(5): Show a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0007g0020 a0001c0001t0012g0034 a0001c0003t0023g0030 a0001c0013t0003g0039 a0001c0019t0006g0015 a0003c0007t0017g0031	8	40	0.2000	-3	c.98- others(22): Show c.98-238966_98-238964delGAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146535427	ATAT ATAT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG01891.hp2 others(20): Show HG00735.hp1 HG00735.hp2 HG01891.hp2 HG02451.hp1 HG02486.hp1 HG02486.hp2 HG02630.hp2 HG02886.hp2 HG02896.hp1 HG02897.hp1 HG02922.hp1 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03139.hp1 HG03139.hp2 HG03225.hp2 HG03239.hp2 HG03540.hp1 NA18522.hp1 NA19030.hp1 NA20129.hp2 NA21309.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0003 others(10): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0008 a0001c0010 a0001c0011 a0001c0013 a0001c0015 a0001c0018 a0001c0019 a0005c0020	a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 others(17): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 a0001c0001t0012 a0001c0002t0001 a0001c0002t0002 a0001c0002t0010 a0001c0003t0011 a0001c0003t0020 a0001c0003t0023 a0001c0005t0022 a0001c0006t0014 a0001c0008t0001 a0001c0010t0002 a0001c0011t0016 a0001c0013t0003 a0001c0015t0001 a0001c0018t0002 a0001c0019t0006 a0005c0020t0005	a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0006g0009 others(20): Show a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0006g0009 a0001c0001t0007g0020 a0001c0001t0012g0034 a0001c0002t0001g0007 a0001c0002t0001g0008 a0001c0002t0002g0013 a0001c0002t0002g0040 a0001c0002t0010g0002 a0001c0003t0011g0023 a0001c0003t0020g0017 a0001c0003t0023g0030 a0001c0005t0022g0032 a0001c0006t0014g0033 a0001c0008t0001g0025 a0001c0010t0002g0014 a0001c0011t0016g0019 a0001c0013t0003g0039 a0001c0015t0001g0011 a0001c0018t0002g0012 a0001c0019t0006g0015 a0005c0020t0005g0016	23	40	0.5750	-3	c.98- others(22): Show c.98-238840_98-238838delTAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146538794	TTGA TTGA	T T	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA20129.hp2 NA18522.hp1 NA20129.hp2	a0001 a0001	a0001c0003 a0001c0013 a0001c0003 a0001c0013	a0001c0003t0023 a0001c0013t0003 a0001c0003t0023 a0001c0013t0003	a0001c0003t0023g0030 a0001c0013t0003g0039 a0001c0003t0023g0030 a0001c0013t0003g0039	2	40	0.0500	-3	c.98- others(22): Show c.98-235472_98-235470delGAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146564556	ATAT ATAT	A A	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 NA19030.hp2 HG02896.hp2 HG02897.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0004 a0002c0016 a0001c0004 a0002c0016	a0001c0004t0003 a0002c0016t0004 a0001c0004t0003 a0002c0016t0004	a0001c0004t0003g0035 a0001c0004t0003g0036 a0002c0016t0004g0024 a0001c0004t0003g0035 a0001c0004t0003g0036 a0002c0016t0004g0024	3	40	0.0750	-3	c.98- others(22): Show c.98-209711_98-209709delTAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146599603	TCTC TCTC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG02486.hp1 others(12): Show HG00735.hp2 HG01891.hp1 HG02486.hp1 HG02486.hp2 HG02630.hp1 HG02717.hp1 HG02717.hp2 HG02886.hp1 HG02897.hp1 HG02976.hp2 HG03139.hp2 HG03239.hp1 NA18522.hp1 NA19030.hp1 NA21309.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0011 a0001c0012 a0001c0013 a0001c0019 a0002c0017 a0003c0007 a0004c0014	a0001c0001t0001 a0001c0001t0007 a0001c0001t0018 others(12): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0018 a0001c0002t0001 a0001c0003t0011 a0001c0003t0013 a0001c0003t0020 a0001c0005t0008 a0001c0011t0016 a0001c0012t0004 a0001c0013t0003 a0001c0019t0006 a0002c0017t0015 a0003c0007t0017 a0004c0014t0021	a0001c0001t0001g0038 a0001c0001t0007g0020 a0001c0001t0018g0001 others(12): Show a0001c0001t0001g0038 a0001c0001t0007g0020 a0001c0001t0018g0001 a0001c0002t0001g0008 a0001c0003t0011g0023 a0001c0003t0013g0010 a0001c0003t0020g0017 a0001c0005t0008g0005 a0001c0011t0016g0019 a0001c0012t0004g0026 a0001c0013t0003g0039 a0001c0019t0006g0015 a0002c0017t0015g0037 a0003c0007t0017g0031 a0004c0014t0021g0022	15	40	0.3750	-3	c.98- others(22): Show c.98-174662_98-174660delCCT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146664157	CTTT CTTT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02717.hp1 HG02886.hp1 others(5): Show HG00735.hp1 HG02717.hp1 HG02886.hp1 HG02976.hp2 HG03239.hp1 HG03239.hp2 NA20129.hp1 NA21309.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0002c0017 a0003c0007	a0001c0001t0018 a0001c0002t0002 a0001c0003t0013 others(5): Show a0001c0001t0018 a0001c0002t0002 a0001c0003t0013 a0001c0003t0020 a0001c0006t0009 a0001c0006t0014 a0002c0017t0015 a0003c0007t0017	a0001c0001t0018g0001 a0001c0002t0002g0040 a0001c0003t0013g0010 others(5): Show a0001c0001t0018g0001 a0001c0002t0002g0040 a0001c0003t0013g0010 a0001c0003t0020g0017 a0001c0006t0009g0028 a0001c0006t0014g0033 a0002c0017t0015g0037 a0003c0007t0017g0031	8	40	0.2000	-3	c.98- others(22): Show c.98-110092_98-110090delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146666748	AGTG AGTG	A A	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0003g0035 a0001c0004t0003g0036	2	40	0.0500	-3	c.98- others(22): Show c.98-107519_98-107517delGTG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146724561	CTTT CTTT	C C	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02896.hp1 HG02922.hp1 HG02886.hp2 HG02896.hp1 HG02922.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0005 a0005c0020 a0001c0001 a0001c0005 a0005c0020	a0001c0001t0012 a0001c0005t0022 a0005c0020t0005 a0001c0001t0012 a0001c0005t0022 a0005c0020t0005	a0001c0001t0012g0034 a0001c0005t0022g0032 a0005c0020t0005g0016 a0001c0001t0012g0034 a0001c0005t0022g0032 a0005c0020t0005g0016	3	40	0.0750	-3	c.98- others(20): Show c.98-49684_98-49682delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146733429	CAAG CAAG	C C	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG03239.hp1 HG03540.hp1 others(1): Show HG02896.hp1 HG03239.hp1 HG03540.hp1 NA19030.hp1	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0001c0002 a0003c0007 others(1): Show a0001c0001 a0001c0002 a0003c0007 a0005c0020	a0001c0001t0001 a0001c0002t0010 a0003c0007t0017 others(1): Show a0001c0001t0001 a0001c0002t0010 a0003c0007t0017 a0005c0020t0005	a0001c0001t0001g0038 a0001c0002t0010g0002 a0003c0007t0017g0031 others(1): Show a0001c0001t0001g0038 a0001c0002t0010g0002 a0003c0007t0017g0031 a0005c0020t0005g0016	4	40	0.1000	-3	c.98- others(20): Show c.98-40839_98-40837delGAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146756040	TATG TATG	T T	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp1 HG02897.hp2 others(2): Show HG02896.hp2 HG02897.hp1 HG02897.hp2 NA20129.hp2 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0004 others(1): Show a0001c0002 a0001c0003 a0001c0004 a0001c0010	a0001c0002t0001 a0001c0003t0023 a0001c0004t0003 others(1): Show a0001c0002t0001 a0001c0003t0023 a0001c0004t0003 a0001c0010t0002	a0001c0002t0001g0008 a0001c0003t0023g0030 a0001c0004t0003g0035 others(2): Show a0001c0002t0001g0008 a0001c0003t0023g0030 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0010t0002g0014	5	40	0.1250	-3	c.98- others(20): Show c.98-18228_98-18226delGAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146767385	ATGT ATGT	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02486.hp2 HG02976.hp2 others(1): Show HG01891.hp2 HG02486.hp2 HG02976.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0016 a0001c0001 a0001c0003 a0002c0016	a0001c0001t0006 a0001c0003t0011 a0001c0003t0020 others(1): Show a0001c0001t0006 a0001c0003t0011 a0001c0003t0020 a0002c0016t0004	a0001c0001t0006g0009 a0001c0003t0011g0023 a0001c0003t0020g0017 others(1): Show a0001c0001t0006g0009 a0001c0003t0011g0023 a0001c0003t0020g0017 a0002c0016t0004g0024	4	40	0.1000	-3	c.98- others(18): Show c.98-6884_98-6882delGTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146857198	AAGG AAGG	A A	intron_variant intron_variant	MODIFIER	HG03239.hp2 NA20129.hp1 HG03239.hp2 NA20129.hp1	a0001 a0001	a0001c0002 a0001c0006 a0001c0002 a0001c0006	a0001c0002t0002 a0001c0006t0009 a0001c0002t0002 a0001c0006t0009	a0001c0002t0002g0040 a0001c0006t0009g0028 a0001c0002t0002g0040 a0001c0006t0009g0028	2	40	0.0500	-3	c.402 others(22): Show c.402+17297_402+17299delGAG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146873894	ATAT ATAT	A A	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG03540.hp2 HG02897.hp1 HG03540.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0003t0004 a0001c0002t0001 a0001c0003t0004	a0001c0002t0001g0008 a0001c0003t0004g0029 a0001c0002t0001g0008 a0001c0003t0004g0029	2	40	0.0500	-3	c.402 others(22): Show c.402+33995_402+33997delATT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146901030	GTAA GTAA	G G	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02896.hp2 HG02897.hp2 others(6): Show HG02451.hp2 HG02896.hp2 HG02897.hp2 HG02976.hp2 HG03098.hp2 HG03239.hp2 NA18522.hp2 NA19030.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0002t0001 a0001c0002t0002 a0001c0003t0020 a0001c0004t0003 a0001c0010t0002	a0001c0001t0001g0038 a0001c0001t0002g0006 a0001c0001t0007g0018 others(6): Show a0001c0001t0001g0038 a0001c0001t0002g0006 a0001c0001t0007g0018 a0001c0002t0001g0021 a0001c0002t0002g0040 a0001c0003t0020g0017 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0010t0002g0014	9	40	0.2250	-3	c.402 others(22): Show c.402+61152_402+61154delAAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146906822	GAGA GAGA	G G	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02451.hp1 HG00735.hp1 HG02451.hp1	a0001 a0001	a0001c0002 a0001c0006 a0001c0002 a0001c0006	a0001c0002t0001 a0001c0006t0014 a0001c0002t0001 a0001c0006t0014	a0001c0002t0001g0007 a0001c0006t0014g0033 a0001c0002t0001g0007 a0001c0006t0014g0033	2	40	0.0500	-3	c.402 others(22): Show c.402+66924_402+66926delAAG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146938388	AAGT AAGT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02451.hp1 HG02451.hp2 others(10): Show HG00735.hp1 HG02451.hp1 HG02451.hp2 HG02630.hp1 HG02896.hp2 HG02897.hp2 HG02976.hp2 HG03098.hp2 HG03239.hp2 HG03540.hp2 NA18522.hp2 NA19030.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0001c0010 a0001c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0002t0001 a0001c0002t0002 a0001c0003t0004 a0001c0003t0020 a0001c0004t0003 a0001c0006t0014 a0001c0010t0002 a0001c0012t0004	a0001c0001t0001g0038 a0001c0001t0002g0006 a0001c0001t0007g0018 others(10): Show a0001c0001t0001g0038 a0001c0001t0002g0006 a0001c0001t0007g0018 a0001c0002t0001g0007 a0001c0002t0001g0021 a0001c0002t0002g0040 a0001c0003t0004g0029 a0001c0003t0020g0017 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0006t0014g0033 a0001c0010t0002g0014 a0001c0012t0004g0026	13	40	0.3250	-3	c.402 others(22): Show c.402+98488_402+98490delAGT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147017288	TATA TATA	T T	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02630.hp1 HG02896.hp2 others(9): Show HG01891.hp1 HG02630.hp1 HG02896.hp2 HG02897.hp2 HG03098.hp1 HG03098.hp2 HG03225.hp1 HG03225.hp2 NA19030.hp1 NA19030.hp2 NA20129.hp2 NA21309.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0009 a0001c0010 a0001c0012 a0001c0018 a0002c0016 a0004c0014	a0001c0001t0001 a0001c0002t0001 a0001c0003t0023 others(7): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0023 a0001c0004t0003 a0001c0009t0019 a0001c0010t0002 a0001c0012t0004 a0001c0018t0002 a0002c0016t0004 a0004c0014t0021	a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0002t0001g0021 others(9): Show a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0002t0001g0021 a0001c0003t0023g0030 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0009t0019g0027 a0001c0010t0002g0014 a0001c0012t0004g0026 a0001c0018t0002g0012 a0002c0016t0004g0024 a0004c0014t0021g0022	12	40	0.3000	-3	c.403 others(22): Show c.403-26614_403-26612delTAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147021262	ATTC ATTC	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG02717.hp1 others(10): Show HG00735.hp1 HG00735.hp2 HG02717.hp1 HG02717.hp2 HG02886.hp1 HG02897.hp1 HG02922.hp2 HG03139.hp1 HG03139.hp2 HG03239.hp2 NA18522.hp1 NA18522.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0008 a0001c0011 a0001c0013 a0001c0019 a0002c0017	a0001c0001t0007 a0001c0001t0018 a0001c0002t0001 others(10): Show a0001c0001t0007 a0001c0001t0018 a0001c0002t0001 a0001c0002t0002 a0001c0003t0013 a0001c0004t0005 a0001c0005t0008 a0001c0006t0014 a0001c0008t0001 a0001c0011t0016 a0001c0013t0003 a0001c0019t0006 a0002c0017t0015	a0001c0001t0007g0018 a0001c0001t0018g0001 a0001c0002t0001g0008 others(10): Show a0001c0001t0007g0018 a0001c0001t0018g0001 a0001c0002t0001g0008 a0001c0002t0002g0040 a0001c0003t0013g0010 a0001c0004t0005g0004 a0001c0005t0008g0005 a0001c0006t0014g0033 a0001c0008t0001g0025 a0001c0011t0016g0019 a0001c0013t0003g0039 a0001c0019t0006g0015 a0002c0017t0015g0037	13	40	0.3250	-3	c.403 others(22): Show c.403-22639_403-22637delCTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147025863	TTTA TTTA	T T	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp2 HG02486.hp2 others(11): Show HG01891.hp1 HG01891.hp2 HG02486.hp2 HG02630.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG03098.hp1 HG03098.hp2 HG03225.hp2 NA19030.hp1 NA19030.hp2 NA20129.hp2 NA21309.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0010 a0001c0012 a0001c0018 a0002c0016 a0004c0014	a0001c0001t0001 a0001c0001t0006 a0001c0001t0012 others(9): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0012 a0001c0002t0001 a0001c0003t0011 a0001c0003t0023 a0001c0004t0003 a0001c0010t0002 a0001c0012t0004 a0001c0018t0002 a0002c0016t0004 a0004c0014t0021	a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0006g0009 others(11): Show a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0006g0009 a0001c0001t0012g0034 a0001c0002t0001g0021 a0001c0003t0011g0023 a0001c0003t0023g0030 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0010t0002g0014 a0001c0012t0004g0026 a0001c0018t0002g0012 a0002c0016t0004g0024 a0004c0014t0021g0022	14	40	0.3500	-3	c.403 others(22): Show c.403-18043_403-18041delTTA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147032673	TAAA TAAA	T T	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02922.hp1 HG01891.hp2 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0012 a0001c0001t0006 a0001c0001t0012	a0001c0001t0006g0009 a0001c0001t0012g0034 a0001c0001t0006g0009 a0001c0001t0012g0034	2	40	0.0500	-3	c.403 others(22): Show c.403-11233_403-11231delAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147040451	ATTT ATTT	A A	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02451.hp1 HG02630.hp2 others(8): Show HG01891.hp1 HG02451.hp1 HG02630.hp2 HG02896.hp1 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03225.hp2 HG03239.hp1 NA19030.hp1 NA21309.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0005	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0010 a0001c0015 a0001c0018 a0003c0007 a0004c0014 a0005c0020	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(7): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0003t0020 a0001c0010t0002 a0001c0015t0001 a0001c0018t0002 a0003c0007t0017 a0004c0014t0021 a0005c0020t0005	a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0002t0001g0007 others(8): Show a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0002t0001g0007 a0001c0002t0002g0013 a0001c0003t0020g0017 a0001c0010t0002g0014 a0001c0015t0001g0011 a0001c0018t0002g0012 a0003c0007t0017g0031 a0004c0014t0021g0022 a0005c0020t0005g0016	11	40	0.2750	-3	c.403 others(20): Show c.403-3431_403-3429delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147062127	CAAA CAAA	C C	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp2 HG02922.hp1 others(1): Show HG02897.hp1 HG02897.hp2 HG02922.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0001c0009	a0001c0001t0012 a0001c0002t0001 a0001c0004t0003 others(1): Show a0001c0001t0012 a0001c0002t0001 a0001c0004t0003 a0001c0009t0019	a0001c0001t0012g0034 a0001c0002t0001g0008 a0001c0004t0003g0036 others(1): Show a0001c0001t0012g0034 a0001c0002t0001g0008 a0001c0004t0003g0036 a0001c0009t0019g0027	4	40	0.1000	-3	c.550 others(22): Show c.550+18114_550+18116delAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	4/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147067289	CAAA CAAA	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01891.hp1 HG01891.hp2 others(7): Show HG00735.hp1 HG01891.hp1 HG01891.hp2 HG02486.hp1 HG02886.hp2 HG02976.hp2 HG03139.hp2 HG03239.hp1 HG03540.hp2 NA20129.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0003 a0001c0005 others(4): Show a0001c0001 a0001c0003 a0001c0005 a0001c0006 a0001c0011 a0003c0007 a0004c0014	a0001c0001t0006 a0001c0001t0007 a0001c0003t0004 others(7): Show a0001c0001t0006 a0001c0001t0007 a0001c0003t0004 a0001c0003t0020 a0001c0005t0022 a0001c0006t0009 a0001c0006t0014 a0001c0011t0016 a0003c0007t0017 a0004c0014t0021	a0001c0001t0006g0009 a0001c0001t0007g0020 a0001c0003t0004g0029 others(7): Show a0001c0001t0006g0009 a0001c0001t0007g0020 a0001c0003t0004g0029 a0001c0003t0020g0017 a0001c0005t0022g0032 a0001c0006t0009g0028 a0001c0006t0014g0033 a0001c0011t0016g0019 a0003c0007t0017g0031 a0004c0014t0021g0022	10	40	0.2500	-3	c.550 others(22): Show c.550+23257_550+23259delAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	4/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147073122	CTTT CTTT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02451.hp1 HG02486.hp1 others(13): Show HG00735.hp2 HG02451.hp1 HG02486.hp1 HG02630.hp1 HG02630.hp2 HG02886.hp1 HG02896.hp1 HG02922.hp1 HG02976.hp1 HG02976.hp2 HG03098.hp1 NA18522.hp1 NA19030.hp2 NA20129.hp2 NA21309.hp1 NA21309.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0010 a0001c0012 a0001c0013 a0001c0015 a0001c0019 a0002c0016 a0005c0020	a0001c0001t0001 a0001c0001t0007 a0001c0001t0012 others(13): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0012 a0001c0001t0018 a0001c0002t0001 a0001c0002t0002 a0001c0003t0013 a0001c0003t0020 a0001c0003t0023 a0001c0010t0002 a0001c0012t0004 a0001c0013t0003 a0001c0015t0001 a0001c0019t0006 a0002c0016t0004 a0005c0020t0005	a0001c0001t0001g0003 a0001c0001t0007g0020 a0001c0001t0012g0034 others(13): Show a0001c0001t0001g0003 a0001c0001t0007g0020 a0001c0001t0012g0034 a0001c0001t0018g0001 a0001c0002t0001g0007 a0001c0002t0002g0013 a0001c0003t0013g0010 a0001c0003t0020g0017 a0001c0003t0023g0030 a0001c0010t0002g0014 a0001c0012t0004g0026 a0001c0013t0003g0039 a0001c0015t0001g0011 a0001c0019t0006g0015 a0002c0016t0004g0024 a0005c0020t0005g0016	16	40	0.4000	-3	c.550 others(22): Show c.550+29082_550+29084delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	4/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147083674	ATAT ATAT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02922.hp1 HG03098.hp1 HG02630.hp1 HG02922.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0012 a0001c0001 a0001c0012	a0001c0001t0001 a0001c0001t0012 a0001c0012t0004 a0001c0001t0001 a0001c0001t0012 a0001c0012t0004	a0001c0001t0001g0003 a0001c0001t0012g0034 a0001c0012t0004g0026 a0001c0001t0001g0003 a0001c0001t0012g0034 a0001c0012t0004g0026	3	40	0.0750	-3	c.551 others(22): Show c.551-24469_551-24467delTAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	4/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147192335	TCTC TCTC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02451.hp2 HG02486.hp1 others(19): Show HG00735.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02630.hp2 HG02717.hp1 HG02717.hp2 HG02896.hp1 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03139.hp1 HG03225.hp1 HG03239.hp2 HG03540.hp1 NA18522.hp2 NA19030.hp1 NA19030.hp2 NA20129.hp1 NA20129.hp2 NA21309.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0008 a0001c0009 a0001c0015 a0002c0016 a0002c0017 a0005c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(16): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0001t0018 a0001c0002t0002 a0001c0002t0010 a0001c0003t0011 a0001c0003t0020 a0001c0003t0023 a0001c0004t0005 a0001c0005t0008 a0001c0006t0009 a0001c0006t0014 a0001c0008t0001 a0001c0009t0019 a0001c0015t0001 a0002c0016t0004 a0002c0017t0015 a0005c0020t0005	a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0002g0006 others(19): Show a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0002g0006 a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0001t0018g0001 a0001c0002t0002g0013 a0001c0002t0002g0040 a0001c0002t0010g0002 a0001c0003t0011g0023 a0001c0003t0020g0017 a0001c0003t0023g0030 a0001c0004t0005g0004 a0001c0005t0008g0005 a0001c0006t0009g0028 a0001c0006t0014g0033 a0001c0008t0001g0025 a0001c0009t0019g0027 a0001c0015t0001g0011 a0002c0016t0004g0024 a0002c0017t0015g0037 a0005c0020t0005g0016	22	40	0.5500	-3	c.134 others(24): Show c.1348+59830_1348+59832delCTC	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	8/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147198232	CTTT CTTT	C C	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02976.hp2 HG03098.hp1 others(1): Show HG02717.hp1 HG02976.hp2 HG03098.hp1 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0016 others(1): Show a0001c0001 a0001c0003 a0002c0016 a0002c0017	a0001c0001t0001 a0001c0003t0020 a0002c0016t0004 others(1): Show a0001c0001t0001 a0001c0003t0020 a0002c0016t0004 a0002c0017t0015	a0001c0001t0001g0003 a0001c0003t0020g0017 a0002c0016t0004g0024 others(1): Show a0001c0001t0001g0003 a0001c0003t0020g0017 a0002c0016t0004g0024 a0002c0017t0015g0037	4	40	0.1000	-3	c.134 others(24): Show c.1348+65742_1348+65744delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	8/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147210473	ATCT ATCT	A A	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02486.hp1 HG03098.hp1 others(1): Show HG02451.hp1 HG02486.hp1 HG03098.hp1 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0016 a0001c0001 a0001c0002 a0002c0016	a0001c0001t0001 a0001c0001t0007 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0007 a0001c0002t0001 a0002c0016t0004	a0001c0001t0001g0003 a0001c0001t0007g0020 a0001c0002t0001g0007 others(1): Show a0001c0001t0001g0003 a0001c0001t0007g0020 a0001c0002t0001g0007 a0002c0016t0004g0024	4	40	0.1000	-3	c.134 others(24): Show c.1348+77968_1348+77970delTCT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	8/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147253383	GTTT GTTT	G G	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 HG02976.hp1 others(1): Show HG02896.hp2 HG02897.hp2 HG02976.hp1 HG03139.hp1	a0001 a0001	a0001c0004 a0001c0008 a0001c0015 a0001c0004 a0001c0008 a0001c0015	a0001c0004t0003 a0001c0008t0001 a0001c0015t0001 a0001c0004t0003 a0001c0008t0001 a0001c0015t0001	a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0008t0001g0025 others(1): Show a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0008t0001g0025 a0001c0015t0001g0011	4	40	0.1000	-3	c.134 others(24): Show c.1349-46740_1349-46738delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	8/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147273993	ATAT ATAT	A A	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02486.hp2 HG02922.hp2 others(1): Show HG02451.hp1 HG02486.hp2 HG02922.hp2 NA18522.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0004 others(1): Show a0001c0002 a0001c0003 a0001c0004 a0001c0013	a0001c0002t0001 a0001c0003t0011 a0001c0004t0005 others(1): Show a0001c0002t0001 a0001c0003t0011 a0001c0004t0005 a0001c0013t0003	a0001c0002t0001g0007 a0001c0003t0011g0023 a0001c0004t0005g0004 others(1): Show a0001c0002t0001g0007 a0001c0003t0011g0023 a0001c0004t0005g0004 a0001c0013t0003g0039	4	40	0.1000	-3	c.134 others(24): Show c.1349-26145_1349-26143delTTA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	8/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147314631	CAAA CAAA	C C	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG01891.hp2 others(26): Show HG00735.hp2 HG01891.hp1 HG01891.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02976.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03540.hp1 HG03540.hp2 NA18522.hp1 NA18522.hp2 NA19030.hp2 NA21309.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(12): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0009 a0001c0010 a0001c0011 a0001c0012 a0001c0013 a0001c0018 a0001c0019 a0002c0016 a0002c0017 a0004c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(21): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0001t0012 a0001c0002t0001 a0001c0002t0002 a0001c0002t0010 a0001c0003t0004 a0001c0003t0011 a0001c0003t0020 a0001c0004t0003 a0001c0004t0005 a0001c0005t0022 a0001c0009t0019 a0001c0010t0002 a0001c0011t0016 a0001c0012t0004 a0001c0013t0003 a0001c0018t0002 a0001c0019t0006 a0002c0016t0004 a0002c0017t0015 a0004c0014t0021	a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0001t0006g0009 others(26): Show a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0001t0006g0009 a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0001t0012g0034 a0001c0002t0001g0007 a0001c0002t0001g0008 a0001c0002t0001g0021 a0001c0002t0002g0013 a0001c0002t0002g0040 a0001c0002t0010g0002 a0001c0003t0004g0029 a0001c0003t0011g0023 a0001c0003t0020g0017 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0005g0004 a0001c0005t0022g0032 a0001c0009t0019g0027 a0001c0010t0002g0014 a0001c0011t0016g0019 a0001c0012t0004g0026 a0001c0013t0003g0039 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0016t0004g0024 a0002c0017t0015g0037 a0004c0014t0021g0022	29	40	0.7250	-3	c.149 others(24): Show c.1498+14344_1498+14346delAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	9/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147315478	CTTT CTTT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG01891.hp2 others(21): Show HG00735.hp2 HG01891.hp1 HG01891.hp2 HG02451.hp2 HG02486.hp1 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03540.hp1 HG03540.hp2 NA18522.hp2 NA21309.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(10): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0009 a0001c0010 a0001c0011 a0001c0012 a0001c0018 a0001c0019 a0002c0017 a0004c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0001t0012 a0001c0002t0001 a0001c0002t0002 a0001c0002t0010 a0001c0003t0004 a0001c0004t0003 a0001c0004t0005 a0001c0005t0022 a0001c0009t0019 a0001c0010t0002 a0001c0011t0016 a0001c0012t0004 a0001c0018t0002 a0001c0019t0006 a0002c0017t0015 a0004c0014t0021	a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0001t0006g0009 others(21): Show a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0001t0006g0009 a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0001t0012g0034 a0001c0002t0001g0008 a0001c0002t0001g0021 a0001c0002t0002g0013 a0001c0002t0002g0040 a0001c0002t0010g0002 a0001c0003t0004g0029 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0005g0004 a0001c0005t0022g0032 a0001c0009t0019g0027 a0001c0010t0002g0014 a0001c0011t0016g0019 a0001c0012t0004g0026 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0017t0015g0037 a0004c0014t0021g0022	24	40	0.6000	-3	c.149 others(24): Show c.1498+15207_1498+15209delTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	9/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147326057	GGAC GGAC	G G	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG03139.hp1 HG02976.hp1 HG03139.hp1	a0001 a0001	a0001c0008 a0001c0015 a0001c0008 a0001c0015	a0001c0008t0001 a0001c0015t0001 a0001c0008t0001 a0001c0015t0001	a0001c0008t0001g0025 a0001c0015t0001g0011 a0001c0008t0001g0025 a0001c0015t0001g0011	2	40	0.0500	-3	c.149 others(24): Show c.1498+25771_1498+25773delGAC	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	9/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147329770	GTTC GTTC	G G	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02486.hp1 HG02922.hp2 others(3): Show HG01891.hp1 HG02486.hp1 HG02922.hp2 HG03540.hp2 NA19030.hp2 NA20129.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0003 a0001c0004 others(3): Show a0001c0001 a0001c0003 a0001c0004 a0001c0006 a0002c0016 a0004c0014	a0001c0001t0007 a0001c0003t0004 a0001c0004t0005 others(3): Show a0001c0001t0007 a0001c0003t0004 a0001c0004t0005 a0001c0006t0009 a0002c0016t0004 a0004c0014t0021	a0001c0001t0007g0020 a0001c0003t0004g0029 a0001c0004t0005g0004 others(3): Show a0001c0001t0007g0020 a0001c0003t0004g0029 a0001c0004t0005g0004 a0001c0006t0009g0028 a0002c0016t0004g0024 a0004c0014t0021g0022	6	40	0.1500	-3	c.149 others(24): Show c.1498+29483_1498+29485delCTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	9/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147339138	TTTG TTTG	T T	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02486.hp2 HG02630.hp1 others(2): Show HG02451.hp1 HG02486.hp2 HG02630.hp1 HG02976.hp2 NA18522.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0012 others(1): Show a0001c0002 a0001c0003 a0001c0012 a0001c0013	a0001c0002t0001 a0001c0003t0011 a0001c0003t0020 others(2): Show a0001c0002t0001 a0001c0003t0011 a0001c0003t0020 a0001c0012t0004 a0001c0013t0003	a0001c0002t0001g0007 a0001c0003t0011g0023 a0001c0003t0020g0017 others(2): Show a0001c0002t0001g0007 a0001c0003t0011g0023 a0001c0003t0020g0017 a0001c0012t0004g0026 a0001c0013t0003g0039	5	40	0.1250	-3	c.149 others(24): Show c.1498+38851_1498+38853delGTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	9/23	INFO_REALIGN_3_PRIME	chr7	TogoVar

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