regionname | pos | ref | alt | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
COL4A6_chrX_108150614_108443422 | 108377603 | TTAA | T | intron_variant | MODIFIER | HG01975.hp2 HG01978.hp1 HG02083.hp1 others(29): Show |
a0001a0002a0006 | a0001c0001a0001c0005a0001c0009others(3): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(8): Show | a0001c0001t0001g0020a0001c0001t0002g0012a0001c0001t0003g0039others(29): Show | 32 | 234 | 0.1368 | -3 | c.63+ others(20): Show |
COL4A6 | ENSG00000197565.17 | transcript | ENST00000334504.12 | protein_coding | 2/44 | chrX | TogoVar | ||||||
COL4A6_chrX_108150614_108443422 | 108382962 | AAAT | A | intron_variant | MODIFIER | HG00735.hp2 HG00741.hp2 HG01109.hp1 others(21): Show |
a0001a0012a0013 | a0001c0001a0012c0023a0013c0021 | a0001c0001t0001a0001c0001t0002a0012c0023t0001others(1): Show | a0001c0001t0001g0043a0001c0001t0001g0046a0001c0001t0001g0052others(21): Show | 24 | 234 | 0.1026 | -3 | c.63+ others(20): Show |
COL4A6 | ENSG00000197565.17 | transcript | ENST00000334504.12 | protein_coding | 2/44 | chrX | TogoVar | ||||||
COL4A6_chrX_108150614_108443422 | 108402682 | TATC | T | intron_variant | MODIFIER | HG02055.hp1 HG02523.hp1 HG04228.hp1 |
a0001a0005 | a0001c0001a0005c0016 | a0001c0001t0001a0001c0001t0002a0005c0016t0001 | a0001c0001t0001g0005a0001c0001t0002g0008a0005c0016t0001g0007 | 3 | 234 | 0.0128 | -3 | c.63+ others(20): Show |
COL4A6 | ENSG00000197565.17 | transcript | ENST00000334504.12 | protein_coding | 2/44 | chrX | TogoVar | ||||||
COL4A6_chrX_108150614_108443422 | 108439945 | CCTT | C | upstream_gene_variant | MODIFIER | HG02698.hp1 | a0002 | a0002c0002 | a0002c0002t0002 | a0002c0002t0002g0212 | 1 | 234 | 0.0043 | -3 | c.-17 others(14): Show |
COL4A6 | ENSG00000197565.17 | transcript | ENST00000334504.12 | protein_coding | 1524 | chrX | TogoVar | ||||||
COL5A1_chr9_134636803_134849843 | 134665117 | TGAA | T | intron_variant | MODIFIER | HG01243.hp1 HG01943.hp1 HG02451.hp1 others(7): Show |
a0001a0013 | a0001c0001a0001c0003a0001c0005others(3): Show | a0001c0001t0009a0001c0003t0003a0001c0003t0010others(7): Show | a0001c0001t0009g0233a0001c0003t0003g0255a0001c0003t0010g0259others(7): Show | 10 | 272 | 0.0368 | -3 | c.109 others(22): Show |
COL5A1 | ENSG00000130635.17 | transcript | ENST00000371817.8 | protein_coding | 1/65 | chr9 | TogoVar | ||||||
COL5A1_chr9_134636803_134849843 | 134666387 | CCTT | C | intron_variant | MODIFIER | HG00099.hp1 HG00140.hp2 HG00408.hp2 others(70): Show |
a0001a0002a0005others(4): Show | a0001c0001a0001c0002a0001c0003others(20): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(54): Show | a0001c0001t0001g0041a0001c0001t0002g0023a0001c0001t0002g0111others(70): Show | 73 | 272 | 0.2684 | -3 | c.109 others(22): Show |
COL5A1 | ENSG00000130635.17 | transcript | ENST00000371817.8 | protein_coding | 1/65 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | |||||
COL5A1_chr9_134636803_134849843 | 134703627 | GTTT | G | intron_variant | MODIFIER | HG00140.hp2 HG00280.hp2 HG00323.hp1 others(52): Show |
a0001a0002a0004others(1): Show | a0001c0001a0001c0002a0001c0003others(16): Show | a0001c0001t0004a0001c0001t0005a0001c0001t0009others(34): Show | a0001c0001t0004g0102a0001c0001t0005g0119a0001c0001t0009g0109others(52): Show | 55 | 272 | 0.2022 | -3 | c.654 others(20): Show |
COL5A1 | ENSG00000130635.17 | transcript | ENST00000371817.8 | protein_coding | 4/65 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | |||||
COL5A1_chr9_134636803_134849843 | 134712241 | CCTT | C | intron_variant | MODIFIER | HG00741.hp2 HG01257.hp1 HG01934.hp1 others(1): Show |
a0001a0010 | a0001c0001a0001c0003a0001c0004others(1): Show | a0001c0001t0005a0001c0003t0001a0001c0004t0002others(1): Show | a0001c0001t0005g0119a0001c0003t0001g0123a0001c0004t0002g0228others(1): Show | 4 | 272 | 0.0147 | -3 | c.654 others(22): Show |
COL5A1 | ENSG00000130635.17 | transcript | ENST00000371817.8 | protein_coding | 4/65 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | |||||
COL5A1_chr9_134636803_134849843 | 134715977 | CTGG | C | intron_variant | MODIFIER | HG00099.hp2 HG00140.hp2 HG00280.hp2 others(155): Show |
a0001a0002a0004others(4): Show | a0001c0001a0001c0002a0001c0003others(35): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(88): Show | a0001c0001t0001g0033a0001c0001t0001g0212a0001c0001t0002g0023others(154): Show | 158 | 272 | 0.5809 | -3 | c.655 others(22): Show |
COL5A1 | ENSG00000130635.17 | transcript | ENST00000371817.8 | protein_coding | 4/65 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | |||||
COL5A1_chr9_134636803_134849843 | 134752419 | CGGG | C | intron_variant | MODIFIER | HG00140.hp1 HG00741.hp1 HG01167.hp2 others(20): Show |
a0001a0012 | a0001c0001a0001c0003a0001c0004others(10): Show | a0001c0001t0001a0001c0001t0004a0001c0001t0059others(19): Show | a0001c0001t0001g0147a0001c0001t0004g0102a0001c0001t0059g0093others(20): Show | 23 | 272 | 0.0846 | -3 | c.166 others(20): Show |
COL5A1 | ENSG00000130635.17 | transcript | ENST00000371817.8 | protein_coding | 13/65 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | |||||
COL5A1_chr9_134636803_134849843 | 134760399 | CCCA | C | intron_variant | MODIFIER | HG01884.hp2 HG02165.hp2 HG02717.hp1 others(7): Show |
a0001 | a0001c0002a0001c0005a0001c0007others(2): Show | a0001c0002t0001a0001c0005t0022a0001c0005t0050others(7): Show | a0001c0002t0001g0018a0001c0005t0022g0085a0001c0005t0050g0271others(7): Show | 10 | 272 | 0.0368 | -3 | c.193 others(22): Show |
COL5A1 | ENSG00000130635.17 | transcript | ENST00000371817.8 | protein_coding | 18/65 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | |||||
COL5A1_chr9_134636803_134849843 | 134810865 | CCTT | C | intron_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00323.hp2 others(21): Show |
a0001a0002 | a0001c0003a0001c0005a0001c0006others(11): Show | a0001c0003t0001a0001c0003t0003a0001c0003t0004others(20): Show | a0001c0003t0001g0205a0001c0003t0003g0201a0001c0003t0004g0262others(21): Show | 24 | 272 | 0.0882 | -3 | c.352 others(20): Show |
COL5A1 | ENSG00000130635.17 | transcript | ENST00000371817.8 | protein_coding | 44/65 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | |||||
COL5A1_chr9_134636803_134849843 | 134826851 | TGGG | T | intron_variant | MODIFIER | HG02145.hp1 HG02572.hp1 HG02723.hp1 others(1): Show |
a0001 | a0001c0001a0001c0005a0001c0007others(1): Show | a0001c0001t0009a0001c0005t0022a0001c0007t0017others(1): Show | a0001c0001t0009g0233a0001c0005t0022g0085a0001c0007t0017g0241others(1): Show | 4 | 272 | 0.0147 | -3 | c.506 others(20): Show |
COL5A1 | ENSG00000130635.17 | transcript | ENST00000371817.8 | protein_coding | 63/65 | chr9 | TogoVar | ||||||
COL5A1_chr9_134636803_134849843 | 134831274 | CATT | C | intron_variant | MODIFIER | NA18966.hp2 NA18971.hp1 NA19011.hp1 |
a0001 | a0001c0014 | a0001c0014t0002 | a0001c0014t0002g0066a0001c0014t0002g0067a0001c0014t0002g0161 | 3 | 272 | 0.0110 | -3 | c.513 others(22): Show |
COL5A1 | ENSG00000130635.17 | transcript | ENST00000371817.8 | protein_coding | 64/65 | chr9 | TogoVar | ||||||
COL5A1_chr9_134636803_134849843 | 134837925 | ATTC | A | intron_variant | MODIFIER | HG02886.hp1 HG02976.hp1 NA20129.hp1 |
a0001 | a0001c0018a0001c0025 | a0001c0018t0008a0001c0025t0008 | a0001c0018t0008g0179a0001c0018t0008g0182a0001c0025t0008g0203 | 3 | 272 | 0.0110 | -3 | c.537 others(22): Show |
COL5A1 | ENSG00000130635.17 | transcript | ENST00000371817.8 | protein_coding | 65/65 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | |||||
COL5A2_chr2_189026898_189184761 | 189048397 | CAGA | C | intron_variant | MODIFIER | HG01106.hp1 HG01167.hp2 HG01169.hp2 others(18): Show |
a0001 | a0001c0003a0001c0027 | a0001c0003t0001a0001c0003t0011a0001c0027t0001 | a0001c0003t0001g0150a0001c0003t0001g0164a0001c0003t0001g0175others(18): Show | 21 | 248 | 0.0847 | -3 | c.314 others(20): Show |
COL5A2 | ENSG00000204262.14 | transcript | ENST00000374866.9 | protein_coding | 44/53 | chr2 | TogoVar | ||||||
COL5A2_chr2_189026898_189184761 | 189080363 | TATC | T | intron_variant | MODIFIER | HG01081.hp2 HG01192.hp2 HG04199.hp1 others(1): Show |
a0002a0009 | a0002c0006a0009c0016 | a0002c0006t0005a0002c0006t0017a0009c0016t0006 | a0002c0006t0005g0131a0002c0006t0005g0132a0002c0006t0017g0136others(1): Show | 4 | 248 | 0.0161 | -3 | c.907 others(18): Show |
COL5A2 | ENSG00000204262.14 | transcript | ENST00000374866.9 | protein_coding | 13/53 | chr2 | TogoVar | ||||||
COL5A2_chr2_189026898_189184761 | 189117732 | CTTT | C | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00280.hp2 others(150): Show |
a0001a0002a0003others(11): Show | a0001c0001a0001c0002a0001c0004others(18): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(29): Show | a0001c0001t0001g0001a0001c0001t0001g0010a0001c0001t0001g0011others(146): Show | 153 | 248 | 0.6169 | -3 | c.98- others(18): Show |
COL5A2 | ENSG00000204262.14 | transcript | ENST00000374866.9 | protein_coding | 1/53 | chr2 | TogoVar | ||||||
COL5A2_chr2_189026898_189184761 | 189121736 | CAAA | C | intron_variant | MODIFIER | HG02280.hp1 HG02622.hp2 HG02818.hp2 others(3): Show |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0001a0001c0001t0001g0062a0001c0001t0001g0124 | 6 | 248 | 0.0242 | -3 | c.98- others(20): Show |
COL5A2 | ENSG00000204262.14 | transcript | ENST00000374866.9 | protein_coding | 1/53 | chr2 | TogoVar | ||||||
COL5A2_chr2_189026898_189184761 | 189133114 | CTTT | C | intron_variant | MODIFIER | HG00099.hp1 HG00597.hp1 HG01081.hp2 others(30): Show |
a0001a0002a0006others(2): Show | a0001c0001a0001c0002a0001c0004others(4): Show | a0001c0001t0001a0001c0001t0003a0001c0002t0002others(7): Show | a0001c0001t0001g0018a0001c0001t0001g0026a0001c0001t0001g0030others(30): Show | 33 | 248 | 0.1331 | -3 | c.98- others(20): Show |
COL5A2 | ENSG00000204262.14 | transcript | ENST00000374866.9 | protein_coding | 1/53 | chr2 | TogoVar | ||||||
COL5A3_chr19_9954561_10015504 | 9979791 | GAAA | G | intron_variant | MODIFIER | HG01884.hp2 HG01891.hp2 HG02109.hp2 others(20): Show |
a0001a0003a0006others(8): Show | a0001c0033a0003c0009a0006c0082others(8): Show | a0001c0033t0011a0003c0009t0003a0006c0082t0007others(8): Show | a0001c0033t0011g0154a0001c0033t0011g0168a0003c0009t0003g0077others(20): Show | 23 | 412 | 0.0558 | -3 | c.271 others(18): Show |
COL5A3 | ENSG00000080573.7 | transcript | ENST00000264828.4 | protein_coding | 37/66 | chr19 | TogoVar | ||||||
COL5A3_chr19_9954561_10015504 | 9983675 | AAAG | A | intron_variant | MODIFIER | HG00639.hp1 HG01074.hp1 HG01168.hp1 others(23): Show |
a0012a0013a0020others(7): Show | a0012c0087a0013c0008a0020c0035others(9): Show | a0012c0087t0001a0013c0008t0001a0020c0035t0002others(9): Show | a0012c0087t0001g0041a0013c0008t0001g0044a0013c0008t0001g0045others(22): Show | 26 | 412 | 0.0631 | -3 | c.240 others(22): Show |
COL5A3 | ENSG00000080573.7 | transcript | ENST00000264828.4 | protein_coding | 31/66 | chr19 | TogoVar | ||||||
COL5A3_chr19_9954561_10015504 | 9983721 | AAAG | A | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp1 HG00423.hp2 others(18): Show |
a0001a0004a0034others(3): Show | a0001c0040a0004c0010a0004c0013others(5): Show | a0001c0040t0005a0004c0010t0001a0004c0010t0004others(8): Show | a0001c0040t0005g0127a0001c0040t0005g0158a0004c0010t0001g0267others(18): Show | 21 | 412 | 0.0510 | -3 | c.240 others(22): Show |
COL5A3 | ENSG00000080573.7 | transcript | ENST00000264828.4 | protein_coding | 31/66 | chr19 | TogoVar | ||||||
COL5A3_chr19_9954561_10015504 | 9984942 | ATTT | A | intron_variant | MODIFIER | HG01167.hp1 HG01192.hp2 HG01256.hp1 others(10): Show |
a0002a0003a0006others(4): Show | a0002c0002a0002c0020a0002c0126others(8): Show | a0002c0002t0001a0002c0002t0002a0002c0020t0001others(9): Show | a0002c0002t0001g0315a0002c0002t0002g0078a0002c0002t0002g0364others(10): Show | 13 | 412 | 0.0316 | -3 | c.240 others(20): Show |
COL5A3 | ENSG00000080573.7 | transcript | ENST00000264828.4 | protein_coding | 31/66 | chr19 | TogoVar | ||||||
COL5A3_chr19_9954561_10015504 | 10000452 | CTTT | C | intron_variant | MODIFIER | HG01884.hp1 HG01952.hp2 HG02055.hp1 others(12): Show |
a0012a0014a0017others(6): Show | a0012c0087a0014c0012a0017c0120others(6): Show | a0012c0087t0001a0014c0012t0001a0017c0120t0002others(6): Show | a0012c0087t0001g0041a0014c0012t0001g0200a0014c0012t0001g0201others(12): Show | 15 | 412 | 0.0364 | -3 | c.111 others(22): Show |
COL5A3 | ENSG00000080573.7 | transcript | ENST00000264828.4 | protein_coding | 8/66 | chr19 | TogoVar | ||||||
COL5A3_chr19_9954561_10015504 | 10009162 | GTGT | G | intron_variant | MODIFIER | HG02280.hp2 HG02965.hp1 HG03098.hp2 |
a0067a0068a0069 | a0067c0100a0068c0101a0069c0099 | a0067c0100t0001a0068c0101t0004a0069c0099t0002 | a0067c0100t0001g0038a0068c0101t0004g0039a0069c0099t0002g0040 | 3 | 412 | 0.0073 | -3 | c.88+ others(18): Show |
COL5A3 | ENSG00000080573.7 | transcript | ENST00000264828.4 | protein_coding | 1/66 | chr19 | TogoVar | ||||||
COL5A3_chr19_9954561_10015504 | 10009163 | TGTG | T | intron_variant | MODIFIER | HG00642.hp2 HG00735.hp2 HG03831.hp1 others(1): Show |
a0008a0018 | a0008c0004a0018c0018 | a0008c0004t0001a0018c0018t0003a0018c0018t0006 | a0008c0004t0001g0008a0018c0018t0003g0010a0018c0018t0003g0011others(1): Show | 4 | 412 | 0.0097 | -3 | c.88+ others(18): Show |
COL5A3 | ENSG00000080573.7 | transcript | ENST00000264828.4 | protein_coding | 1/66 | chr19 | TogoVar | ||||||
COL6A1_chr21_45976770_46010048 | 45980160 | GATA | G | upstream_gene_variant | MODIFIER | HG00280.hp1 HG00323.hp1 HG00323.hp2 others(57): Show |
a0001a0002a0003others(9): Show | a0001c0001a0001c0003a0001c0017others(14): Show | a0001c0001t0002a0001c0001t0003a0001c0001t0016others(19): Show | a0001c0001t0002g0003a0001c0001t0002g0004a0001c0001t0002g0007others(57): Show | 60 | 128 | 0.4688 | -3 | c.-16 others(14): Show |
COL6A1 | ENSG00000142156.16 | transcript | ENST00000361866.8 | protein_coding | 1609 | chr21 | TogoVar | ||||||
COL6A1_chr21_45976770_46010048 | 45980178 | AAGG | A | upstream_gene_variant | MODIFIER | HG00733.hp2 HG01123.hp1 HG01255.hp2 others(29): Show |
a0001a0002a0004others(4): Show | a0001c0003a0001c0010a0001c0012others(9): Show | a0001c0003t0001a0001c0003t0007a0001c0010t0005others(13): Show | a0001c0003t0001g0115a0001c0003t0007g0108a0001c0010t0005g0072others(29): Show | 32 | 128 | 0.2500 | -3 | c.-16 others(14): Show |
COL6A1 | ENSG00000142156.16 | transcript | ENST00000361866.8 | protein_coding | 1591 | chr21 | TogoVar | ||||||
COL6A2_chr21_46093112_46134801 | 46099889 | CTTT | C | intron_variant | MODIFIER | HG00140.hp2 HG00735.hp2 HG00738.hp1 others(9): Show |
a0001 | a0001c0001a0001c0002a0001c0011 | a0001c0001t0001a0001c0002t0002a0001c0002t0009others(1): Show | a0001c0001t0001g0337a0001c0002t0002g0270a0001c0002t0002g0271others(8): Show | 12 | 372 | 0.0323 | -3 | c.-28 others(20): Show |
COL6A2 | ENSG00000142173.17 | transcript | ENST00000397763.6 | protein_coding | 1/27 | INFO_REALIGN_3_PRIME | chr21 | TogoVar | |||||
COL6A2_chr21_46093112_46134801 | 46101847 | ATTT | A | intron_variant | MODIFIER | HG00099.hp2 HG01433.hp1 HG02145.hp1 others(6): Show |
a0001a0002a0003 | a0001c0006a0002c0003a0002c0008others(1): Show | a0001c0006t0005a0002c0003t0003a0002c0003t0008others(2): Show | a0001c0006t0005g0057a0001c0006t0005g0058a0001c0006t0005g0059others(6): Show | 9 | 372 | 0.0242 | -3 | c.-28 others(20): Show |
COL6A2 | ENSG00000142173.17 | transcript | ENST00000397763.6 | protein_coding | 1/27 | INFO_REALIGN_3_PRIME | chr21 | TogoVar | |||||
COL6A2_chr21_46093112_46134801 | 46120122 | GGCC | G | intron_variant | MODIFIER | HG00140.hp1 HG00140.hp2 HG00280.hp1 others(155): Show |
a0001a0002a0003others(3): Show | a0001c0001a0001c0002a0001c0006others(20): Show | a0001c0001t0001a0001c0002t0002a0001c0002t0005others(32): Show | a0001c0001t0001g0011a0001c0001t0001g0041a0001c0001t0001g0105others(137): Show | 158 | 372 | 0.4247 | -3 | c.133 others(20): Show |
COL6A2 | ENSG00000142173.17 | transcript | ENST00000397763.6 | protein_coding | 15/27 | chr21 | TogoVar | ||||||
COL6A2_chr21_46093112_46134801 | 46123887 | GTCA | G | intron_variant | MODIFIER | HG00609.hp1 HG01099.hp1 HG01261.hp2 others(38): Show |
a0001a0002a0005others(1): Show | a0001c0001a0001c0005a0001c0006others(7): Show | a0001c0001t0001a0001c0005t0001a0001c0006t0005others(8): Show | a0001c0001t0001g0037a0001c0001t0001g0109a0001c0001t0001g0134others(38): Show | 41 | 372 | 0.1102 | -3 | c.167 others(20): Show |
COL6A2 | ENSG00000142173.17 | transcript | ENST00000397763.6 | protein_coding | 21/27 | chr21 | TogoVar | ||||||
COL6A2_chr21_46093112_46134801 | 46134603 | GTCA | G | downstream_gene_variant | MODIFIER | NA18951.hp2 NA19060.hp1 NA19070.hp2 others(1): Show |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0002a0001c0001t0001g0007a0001c0001t0001g0116others(1): Show | 4 | 372 | 0.0108 | -3 | c.*51 others(14): Show |
COL6A2 | ENSG00000142173.17 | transcript | ENST00000397763.6 | protein_coding | 4803 | chr21 | TogoVar | ||||||
COL6A2_chr21_46093112_46137848 | 46099889 | CTTT | C | intron_variant | MODIFIER | HG00140.hp2 HG00735.hp2 HG00738.hp1 others(9): Show |
a0001 | a0001c0001a0001c0002a0001c0009others(1): Show | a0001c0001t0011a0001c0002t0002a0001c0009t0001others(1): Show | a0001c0001t0011g0334a0001c0002t0002g0267a0001c0002t0002g0268others(8): Show | 12 | 364 | 0.0330 | -3 | c.-28 others(20): Show |
COL6A2 | ENSG00000142173.17 | transcript | ENST00000300527.9 | protein_coding | 1/27 | INFO_REALIGN_3_PRIME | chr21 | TogoVar | |||||
COL6A2_chr21_46093112_46137848 | 46101847 | ATTT | A | intron_variant | MODIFIER | HG00099.hp2 HG01433.hp1 HG02145.hp1 others(6): Show |
a0001a0002a0003 | a0001c0007a0002c0003a0002c0012others(3): Show | a0001c0007t0005a0002c0003t0001a0002c0012t0001others(3): Show | a0001c0007t0005g0059a0001c0007t0005g0060a0001c0007t0005g0061others(6): Show | 9 | 364 | 0.0247 | -3 | c.-28 others(20): Show |
COL6A2 | ENSG00000142173.17 | transcript | ENST00000300527.9 | protein_coding | 1/27 | INFO_REALIGN_3_PRIME | chr21 | TogoVar | |||||
COL6A2_chr21_46093112_46137848 | 46120122 | GGCC | G | intron_variant | MODIFIER | HG00140.hp1 HG00140.hp2 HG00280.hp1 others(153): Show |
a0001a0002a0003others(3): Show | a0001c0001a0001c0002a0001c0006others(29): Show | a0001c0001t0001a0001c0001t0006a0001c0001t0011others(40): Show | a0001c0001t0001g0009a0001c0001t0001g0011a0001c0001t0001g0043others(137): Show | 156 | 364 | 0.4286 | -3 | c.133 others(20): Show |
COL6A2 | ENSG00000142173.17 | transcript | ENST00000300527.9 | protein_coding | 15/27 | chr21 | TogoVar | ||||||
COL6A2_chr21_46093112_46137848 | 46123887 | GTCA | G | intron_variant | MODIFIER | HG00609.hp1 HG01099.hp1 HG01261.hp2 others(36): Show |
a0001a0002a0009others(1): Show | a0001c0001a0001c0006a0001c0007others(11): Show | a0001c0001t0001a0001c0006t0001a0001c0007t0003others(12): Show | a0001c0001t0001g0038a0001c0001t0001g0109a0001c0001t0001g0135others(36): Show | 39 | 364 | 0.1071 | -3 | c.167 others(20): Show |
COL6A2 | ENSG00000142173.17 | transcript | ENST00000300527.9 | protein_coding | 21/27 | chr21 | TogoVar | ||||||
COL6A2_chr21_46093112_46137848 | 46134603 | GTCA | G | downstream_gene_variant | MODIFIER | NA18951.hp2 NA18969.hp1 NA19060.hp1 others(2): Show |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0002a0001c0001t0001g0005a0001c0001t0001g0009others(2): Show | 5 | 364 | 0.0137 | -3 | c.*20 others(14): Show |
COL6A2 | ENSG00000142173.17 | transcript | ENST00000300527.9 | protein_coding | 1756 | chr21 | TogoVar | ||||||
COL6A2_chr21_46093112_46137848 | 46136165 | ATCT | A | downstream_gene_variant | MODIFIER | HG00140.hp2 HG00735.hp2 HG00738.hp1 others(4): Show |
a0001 | a0001c0009 | a0001c0009t0001 | a0001c0009t0001g0021a0001c0009t0001g0253a0001c0009t0001g0259others(3): Show | 7 | 364 | 0.0192 | -3 | c.*36 others(14): Show |
COL6A2 | ENSG00000142173.17 | transcript | ENST00000300527.9 | protein_coding | 3318 | chr21 | TogoVar | ||||||
COL6A3_chr2_237319018_237419164 | 237336220 | TGCA | T | disruptive_inframe_deletion | MODERATE | HG00140.hp2 HG00438.hp2 HG01243.hp2 others(6): Show |
a0007a0063a0068 | a0007c0011a0007c0030a0063c0057others(1): Show | a0007c0011t0001a0007c0030t0001a0063c0057t0002others(1): Show | a0007c0011t0001g0003a0007c0011t0001g0291a0007c0011t0001g0292others(5): Show | 9 | 322 | 0.0280 | -3 | c.887 others(12): Show |
p.Ala others(7): Show |
COL6A3 | ENSG00000163359.17 | transcript | ENST00000295550.9 | protein_coding | 40/44 | 9121/10532 | 8877/9534 | 2959/3177 | chr2 | TogoVar | ||
COL6A3_chr2_237319018_237419164 | 237415344 | AGAG | A | upstream_gene_variant | MODIFIER | HG00140.hp1 HG00140.hp2 HG00408.hp1 others(107): Show |
a0001a0002a0003others(27): Show | a0001c0002a0001c0004a0001c0014others(52): Show | a0001c0002t0001a0001c0002t0002a0001c0002t0003others(64): Show | a0001c0002t0001g0115a0001c0002t0001g0287a0001c0002t0002g0203others(105): Show | 110 | 322 | 0.3416 | -3 | c.-14 others(14): Show |
COL6A3 | ENSG00000163359.17 | transcript | ENST00000295550.9 | protein_coding | 1181 | chr2 | TogoVar | ||||||
COL6A5_chr3_130340672_130489846 | 130354961 | CATT | C | intron_variant | MODIFIER | HG00140.hp2 HG01361.hp2 HG02738.hp1 others(2): Show |
a0013 | a0013c0016a0013c0075 | a0013c0016t0010a0013c0075t0016 | a0013c0016t0010g0013a0013c0016t0010g0014a0013c0016t0010g0015others(2): Show | 5 | 292 | 0.0171 | -3 | c.-29 others(20): Show |
COL6A5 | ENSG00000172752.16 | transcript | ENST00000373157.9 | protein_coding | 1/40 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | |||||
COL6A5_chr3_130340672_130489846 | 130362326 | ATTT | A | intron_variant | MODIFIER | HG00438.hp2 HG03688.hp1 NA18947.hp1 others(4): Show |
a0002a0004a0021others(3): Show | a0002c0002a0002c0047a0004c0003others(4): Show | a0002c0002t0001a0002c0047t0001a0004c0003t0001others(4): Show | a0002c0002t0001g0110a0002c0047t0001g0111a0004c0003t0001g0022others(4): Show | 7 | 292 | 0.0240 | -3 | c.-28 others(22): Show |
COL6A5 | ENSG00000172752.16 | transcript | ENST00000373157.9 | protein_coding | 1/40 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | |||||
COL6A5_chr3_130340672_130489846 | 130379070 | CGAT | C | intron_variant | MODIFIER | HG00140.hp2 HG00408.hp2 HG00544.hp1 others(125): Show |
a0002a0003a0007others(44): Show | a0002c0002a0002c0047a0003c0004others(50): Show | a0002c0002t0001a0002c0002t0002a0002c0047t0001others(60): Show | a0002c0002t0001g0004a0002c0002t0001g0103a0002c0002t0001g0110others(121): Show | 128 | 292 | 0.4384 | -3 | c.668 others(18): Show |
COL6A5 | ENSG00000172752.16 | transcript | ENST00000373157.9 | protein_coding | 3/40 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | |||||
COL6A5_chr3_130340672_130489846 | 130379072 | ATGG | A | intron_variant | MODIFIER | HG02280.hp2 HG02622.hp1 HG02647.hp1 others(1): Show |
a0037a0071a0072 | a0037c0032a0071c0071a0072c0072 | a0037c0032t0001a0037c0032t0005a0071c0071t0001others(1): Show | a0037c0032t0001g0181a0037c0032t0005g0057a0071c0071t0001g0180others(1): Show | 4 | 292 | 0.0137 | -3 | c.668 others(18): Show |
COL6A5 | ENSG00000172752.16 | transcript | ENST00000373157.9 | protein_coding | 3/40 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | |||||
COL6A5_chr3_130340672_130489846 | 130450069 | CAGA | C | intron_variant | MODIFIER | HG03041.hp1 HG03453.hp2 NA19240.hp1 |
a0030a0077 | a0030c0035a0077c0065 | a0030c0035t0001a0077c0065t0001 | a0030c0035t0001g0217a0030c0035t0001g0218a0077c0065t0001g0161 | 3 | 292 | 0.0103 | -3 | c.657 others(22): Show |
COL6A5 | ENSG00000172752.16 | transcript | ENST00000373157.9 | protein_coding | 36/40 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | |||||
COL6A6_chr3_130512177_130682042 | 130527890 | CTTT | C | intron_variant | MODIFIER | HG01884.hp2 HG02055.hp2 HG02074.hp1 others(26): Show |
a0003a0007a0010others(7): Show | a0003c0027a0007c0017a0007c0032others(16): Show | a0003c0027t0004a0007c0017t0006a0007c0032t0003others(19): Show | a0003c0027t0004g0213a0003c0027t0004g0214a0007c0017t0006g0078others(25): Show | 29 | 264 | 0.1099 | -3 | c.-32 others(22): Show |
COL6A6 | ENSG00000206384.11 | transcript | ENST00000358511.11 | protein_coding | 1/36 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | |||||
COL6A6_chr3_130512177_130682042 | 130552822 | CCGT | C | intron_variant | MODIFIER | HG00280.hp2 HG00408.hp2 HG00597.hp1 others(175): Show |
a0001a0002a0003others(38): Show | a0001c0001a0001c0056a0002c0002others(66): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(109): Show | a0001c0001t0001g0011a0001c0001t0001g0114a0001c0001t0001g0121others(173): Show | 178 | 264 | 0.6742 | -3 | c.-31 others(20): Show |
COL6A6 | ENSG00000206384.11 | transcript | ENST00000358511.11 | protein_coding | 1/36 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | |||||
COL6A6_chr3_130512177_130682042 | 130561634 | CTTT | C | intron_variant | MODIFIER | HG00621.hp2 HG02055.hp2 HG02717.hp1 others(11): Show |
a0007a0010a0025 | a0007c0018a0007c0032a0007c0040others(5): Show | a0007c0018t0003a0007c0018t0007a0007c0032t0003others(8): Show | a0007c0018t0003g0015a0007c0018t0007g0245a0007c0032t0003g0128others(11): Show | 14 | 264 | 0.0530 | -3 | c.64+ others(18): Show |
COL6A6 | ENSG00000206384.11 | transcript | ENST00000358511.11 | protein_coding | 2/36 | INFO_REALIGN_3_PRIME | chr3 | TogoVar |