Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
LDB2_chr4_16496541_16903645	16897895	AATATATA others(45): Show AATATATATATATATATATATATATATATATATATATATATATACACATA TGT	A A	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01109.hp2 HG01169.hp2 others(14): Show HG00741.hp1 HG01109.hp2 HG01169.hp2 HG01243.hp1 HG02055.hp1 HG02055.hp2 HG02615.hp1 HG02818.hp2 HG02897.hp2 HG03098.hp1 HG03195.hp2 HG03225.hp1 HG03453.hp2 HG06807.hp2 NA18522.hp1 NA19030.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 a0001c0001t0001 a0001c0001t0003 a0001c0002t0001	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0146 others(14): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0003g0003 a0001c0001t0003g0152 a0001c0001t0003g0157 a0001c0002t0001g0156	17	162	0.1049	-52	c.132 others(67): Show c.132+407_132+458delACATATGTGTATATATATATATATATATAT ATATATATATATATATATATAT		LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	1/7						chr4	TogoVar
LDLRAD4_chr18_13213760_13657751	13288622	GCAGACCG others(45): Show GCAGACCGTGGTCACTCTGCAAGGTGAGTCACGGGGCCACGGTAGCAGCC CCA	G G	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0032	a0001c0001t0032g0122 a0001c0001t0032g0122	1	178	0.0056	-52	c.-38 others(73): Show c.-383+10521_-383+10572delGCCACGGTAGCAGCCCCACAGACC GTGGTCACTCTGCAAGGTGAGTCACGGG		LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding	2/6					INFO_REALIGN_3_PRIME	chr18	TogoVar
LETM1_chr4_1806479_1861156	1828499	GGGGGGCT others(45): Show GGGGGGCTGACCCCCCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCG GGC	G G	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01069.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0067 a0001c0001t0001g0067	1	200	0.0050	-52	c.108 others(71): Show c.1081-2868_1081-2817delGCCCGGCCAGCCGCCCCGTCCGGGAG GGAGGTGGGGGGGGGGGTCAGCCCCC		LETM1	ENSG00000168924.15	transcript	ENST00000302787.3	protein_coding	6/13						chr4	TogoVar
LETM1_chr4_1806479_1861156	1828955	ACCTCCCG others(45): Show ACCTCCCGGACGGGGCGGCTGGCCGGGCAGGGGGGCTGACCCCCCCCCAC CTC	A A	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0148 a0001c0001t0001g0148	1	200	0.0050	-52	c.108 others(71): Show c.1081-3324_1081-3273delGAGGTGGGGGGGGGTCAGCCCCCCTG CCCGGCCAGCCGCCCCGTCCGGGAGG		LETM1	ENSG00000168924.15	transcript	ENST00000302787.3	protein_coding	6/13						chr4	TogoVar
LHFPL3_chr7_104323603_104913561	104833284	TATATATA others(45): Show TATATATATATTATATATATAATAGGATATATATATATTATATATATAAT AGG	T T	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0072 a0001c0001t0001g0072	1	86	0.0116	-52	c.683 others(71): Show c.683-72892_683-72841delTATATATATAATAGGATATATATATA TTATATATATAATAGGATATATATAT		LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL3_chr7_104323603_104913561	104833311	TATATATA others(45): Show TATATATATATTATATATATAATAGGATATATATATATTATATATATAAT AGG	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00323.hp1 HG00621.hp1 others(14): Show HG00099.hp2 HG00323.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00733.hp1 HG01123.hp2 HG01257.hp1 HG01258.hp2 HG01517.hp2 HG02300.hp1 HG02451.hp2 HG03239.hp2 NA18947.hp2 NA18972.hp1 NA18994.hp2 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006	a0001c0001t0001g0084 a0001c0001t0002g0037 a0001c0001t0002g0050 others(14): Show a0001c0001t0001g0084 a0001c0001t0002g0037 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0059 a0001c0001t0002g0061 a0001c0001t0002g0067 a0001c0001t0002g0074 a0001c0001t0003g0044 a0001c0001t0004g0027 a0001c0001t0004g0033 a0001c0001t0004g0045 a0001c0001t0004g0073 a0001c0001t0004g0075 a0001c0001t0006g0013 a0001c0001t0006g0014 a0001c0001t0006g0018	17	86	0.1977	-52	c.683 others(71): Show c.683-72865_683-72814delTATATATATAATAGGATATATATATA TTATATATATAATAGGATATATATAT		LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL6_chr13_39337892_39608193	39352920	TATAAATG others(45): Show TATAAATGTATATATATGTGTGTATATATATATACATACATACACACACA CAC	T T	intron_variant intron_variant	MODIFIER	HG00738.hp2 NA18989.hp1 HG00738.hp2 NA18989.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0004 a0001c0001t0005	a0001c0001t0004g0215 a0001c0001t0005g0148 a0001c0001t0004g0215 a0001c0001t0005g0148	2	242	0.0083	-52	c.485 others(69): Show c.485-8918_485-8867delGTGTGTGTGTGTATGTATGTATATATAT ATACACACATATATATACATTTAT		LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	3/3						chr13	TogoVar
LINGO2_chr9_27932617_29218601	28057559	ATATATAC others(45): Show ATATATACATATATATACACATATATGTATATACATATATATACACATAT ATG	A A	intron_variant intron_variant	MODIFIER	NA19060.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0049 a0001c0001t0003g0049	1	62	0.0161	-52	c.-35 others(73): Show c.-35-106905_-35-106854delCATATATGTGTATATATATGTATA TACATATATGTGTATATATATGTATATA		LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	6/6						chr9	TogoVar
LIPC_chr15_58426991_58574844	58567294	CATATATA others(45): Show CATATATATATACATATATATGTATATGTGTATATATATATATATGTATA TGT	C C	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18960.hp2 NA18975.hp2 others(5): Show NA18943.hp1 NA18960.hp2 NA18975.hp2 NA18985.hp2 NA18995.hp1 NA19000.hp1 NA19074.hp2 NA19086.hp1	a0004 a0007 a0010 a0004 a0007 a0010	a0004c0008 a0007c0023 a0010c0026 a0004c0008 a0007c0023 a0010c0026	a0004c0008t0002 a0007c0023t0002 a0010c0026t0002 a0004c0008t0002 a0007c0023t0002 a0010c0026t0002	a0004c0008t0002g0119 a0004c0008t0002g0126 a0004c0008t0002g0127 others(5): Show a0004c0008t0002g0119 a0004c0008t0002g0126 a0004c0008t0002g0127 a0004c0008t0002g0128 a0004c0008t0002g0130 a0004c0008t0002g0331 a0007c0023t0002g0132 a0010c0026t0002g0293	8	358	0.0224	-52	c.138 others(71): Show c.1389-1410_1389-1359delCATATATATGTATATGTGTATATATA TATATATGTATATGTATATATATATA		LIPC	ENSG00000166035.11	transcript	ENST00000299022.10	protein_coding	8/8					INFO_REALIGN_3_PRIME	chr15	TogoVar
LMAN2_chr5_177326567_177356668	177326833	GAAAGAAA others(45): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAA GAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03491.hp1 HG06807.hp2 HG03491.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0184 a0001c0001t0003g0245 a0001c0001t0001g0184 a0001c0001t0003g0245	2	376	0.0053	-52	c.52 others(63): Show c.5201_*5252delTTCTTTCTTTCTTTCTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCTTTCTTT		LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding					4733		chr5	TogoVar
LMAN2_chr5_177326567_177356668	177326837	GAAAGAAA others(45): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAA GAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02572.hp2 NA19030.hp2 HG02572.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0098 a0001c0001t0001g0227 a0001c0001t0001g0098 a0001c0001t0001g0227	2	376	0.0053	-52	c.51 others(63): Show c.5197_*5248delTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTTTCT TTCTTTCTTTCTTTCTTT		LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding					4729		chr5	TogoVar
LMAN2_chr5_177326567_177356668	177326841	GAAAGAAA others(45): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAA GAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	376	0.0027	-52	c.51 others(63): Show c.5193_*5244delTTCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCT TTCTTTCTTTCTTTCTTT		LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding					4725		chr5	TogoVar
LMAN2_chr5_177326567_177356668	177326845	GAAAGAAA others(45): Show GAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAA GAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp2 HG00423.hp2 HG01069.hp2 others(11): Show HG00280.hp2 HG00423.hp2 HG01069.hp2 HG01071.hp1 HG01106.hp1 HG01123.hp2 HG01255.hp2 HG01346.hp1 HG01346.hp2 HG02602.hp1 NA18949.hp1 NA18968.hp1 NA18977.hp2 NA18979.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0167 others(11): Show a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0167 a0001c0001t0001g0175 a0001c0001t0001g0180 a0001c0001t0001g0188 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0196 a0001c0001t0001g0198 a0001c0001t0001g0199 a0001c0001t0001g0203 a0001c0001t0001g0205 a0001c0001t0001g0211	14	376	0.0372	-52	c.51 others(63): Show c.5189_*5240delTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTTTCT TTCTTTCTTTCTTTCTTT		LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding					4721		chr5	TogoVar
LMAN2_chr5_177326567_177356668	177326857	GAAAGAAA others(45): Show GAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA GAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp2 HG01167.hp1 HG01169.hp1 HG00140.hp2 HG01167.hp1 HG01169.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0034 a0001c0001t0001g0172 a0001c0001t0001g0034 a0001c0001t0001g0172	3	376	0.0080	-52	c.51 others(63): Show c.5177_*5228delTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTCTTTCTTTCTTT		LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding					4709		chr5	TogoVar
LMLN_chr3_197955217_198048720	197977833	CACACACG others(45): Show CACACACGTTAAATCTGGATACATATAAAAATCATCAAACAATCTGGAAG TAT	C C	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03540.hp1 HG03471.hp1 HG03540.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0009 a0002c0002t0009	a0002c0002t0009g0045 a0002c0002t0009g0046 a0002c0002t0009g0045 a0002c0002t0009g0046	2	258	0.0078	-52	c.525 others(69): Show c.525+1130_525+1181delATCTGGATACATATAAAAATCATCAAAC AATCTGGAAGTATACACACGTTAA		LMLN	ENSG00000185621.11	transcript	ENST00000420910.7	protein_coding	5/16					INFO_REALIGN_3_PRIME	chr3	TogoVar
LMLN_chr3_197955217_198048720	198003729	ACATCTAT others(45): Show ACATCTATCTATATATCATCTATACAGATACATATCATACGTAGTAAGTT TGC	A A	intron_variant intron_variant	MODIFIER	NA19003.hp1 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0139 a0001c0001t0001g0139	1	258	0.0039	-52	c.131 others(69): Show c.1319+864_1319+915delCCATCTATCTATATATCATCTATACAGA TACATATCATACGTAGTAAGTTTG		LMLN	ENSG00000185621.11	transcript	ENST00000420910.7	protein_coding	12/16					INFO_REALIGN_3_PRIME	chr3	TogoVar
LMLN_chr3_197955217_198048720	198003989	CCATCTAT others(45): Show CCATCTATCTATATATCATCTATACAGATACATATCATACGTAGTAAGTT TGA	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02145.hp2 HG02280.hp1 others(3): Show HG01884.hp1 HG02145.hp2 HG02280.hp1 HG03139.hp2 HG03225.hp2 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0058 a0002c0002t0002 a0002c0002t0034 others(2): Show a0001c0001t0058 a0002c0002t0002 a0002c0002t0034 a0002c0002t0035 a0002c0002t0055	a0001c0001t0058g0123 a0002c0002t0002g0044 a0002c0002t0002g0066 others(3): Show a0001c0001t0058g0123 a0002c0002t0002g0044 a0002c0002t0002g0066 a0002c0002t0034g0101 a0002c0002t0035g0100 a0002c0002t0055g0016	6	258	0.0233	-52	c.131 others(69): Show c.1319+916_1319+967delACATCTATCTATATATCATCTATACAGA TACATATCATACGTAGTAAGTTTG		LMLN	ENSG00000185621.11	transcript	ENST00000420910.7	protein_coding	12/16					INFO_REALIGN_3_PRIME	chr3	TogoVar
LMLN_chr3_197955217_198048720	198004973	ACATCTAT others(45): Show ACATCTATCTATATATCATCTATACAGATACATATCATACGTAGTAAGTT TGC	A A	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG02040.hp2 HG02055.hp1 others(6): Show HG00597.hp1 HG02040.hp2 HG02055.hp1 HG02155.hp1 HG02486.hp2 HG02630.hp1 HG02717.hp1 HG03579.hp1 NA19084.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0004 a0001c0001 a0002c0002 a0003c0004	a0001c0001t0001 a0001c0001t0018 a0001c0001t0025 others(3): Show a0001c0001t0001 a0001c0001t0018 a0001c0001t0025 a0001c0001t0047 a0002c0002t0006 a0003c0004t0001	a0001c0001t0001g0038 a0001c0001t0001g0082 a0001c0001t0001g0134 others(6): Show a0001c0001t0001g0038 a0001c0001t0001g0082 a0001c0001t0001g0134 a0001c0001t0018g0047 a0001c0001t0018g0049 a0001c0001t0025g0130 a0001c0001t0047g0050 a0002c0002t0006g0131 a0003c0004t0001g0132	9	258	0.0349	-52	c.131 others(71): Show c.1319+1900_1319+1951delCCATCTATCTATATATCATCTATACA GATACATATCATACGTAGTAAGTTTG		LMLN	ENSG00000185621.11	transcript	ENST00000420910.7	protein_coding	12/16					INFO_REALIGN_3_PRIME	chr3	TogoVar
LMLN_chr3_197955217_198048720	198005025	CCATCTAT others(45): Show CCATCTATCTATATATCATCTATACAGATACATATCATACGTAGTAAGTT TGA	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01884.hp2 HG02622.hp2 others(16): Show HG00642.hp2 HG01884.hp2 HG02622.hp2 HG02647.hp2 HG02895.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG03130.hp2 HG03195.hp2 HG03471.hp1 HG03490.hp2 HG03492.hp2 HG03579.hp2 HG03669.hp2 HG03927.hp2 NA18906.hp2 NA19043.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0002c0002t0006 others(11): Show a0001c0001t0001 a0002c0002t0002 a0002c0002t0006 a0002c0002t0009 a0002c0002t0012 a0002c0002t0014 a0002c0002t0016 a0002c0002t0020 a0002c0002t0022 a0002c0002t0024 a0002c0002t0043 a0002c0002t0046 a0002c0002t0054 a0002c0002t0056	a0001c0001t0001g0217 a0002c0002t0002g0075 a0002c0002t0006g0023 others(16): Show a0001c0001t0001g0217 a0002c0002t0002g0075 a0002c0002t0006g0023 a0002c0002t0006g0026 a0002c0002t0006g0051 a0002c0002t0009g0039 a0002c0002t0009g0046 a0002c0002t0012g0073 a0002c0002t0012g0074 a0002c0002t0014g0058 a0002c0002t0016g0011 a0002c0002t0020g0056 a0002c0002t0022g0014 a0002c0002t0022g0015 a0002c0002t0024g0017 a0002c0002t0043g0034 a0002c0002t0046g0043 a0002c0002t0054g0022 a0002c0002t0056g0028	19	258	0.0736	-52	c.131 others(71): Show c.1319+2148_1319+2199delGTAGTAAGTTTGACATCTATCTATAT ATCATCTATACAGATACATATCATAC		LMLN	ENSG00000185621.11	transcript	ENST00000420910.7	protein_coding	12/16					INFO_REALIGN_3_PRIME	chr3	TogoVar
LNPEP_chr5_96931080_97042513	96954697	TATATACA others(45): Show TATATACATATATACACATATATATACATATATATATACATATATATATA CAC	T T	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02896.hp1 HG02976.hp1 others(1): Show HG02559.hp1 HG02896.hp1 HG02976.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0179 a0001c0001t0020g0180 a0001c0001t0020g0181 others(1): Show a0001c0001t0020g0179 a0001c0001t0020g0180 a0001c0001t0020g0181 a0001c0001t0020g0182	4	352	0.0114	-52	c.19+ others(69): Show c.19+18529_19+18580delCATATATACACATATATATACATATATA TATACATATATATATACACATATA		LNPEP	ENSG00000113441.16	transcript	ENST00000231368.10	protein_coding	1/17					INFO_REALIGN_3_PRIME	chr5	TogoVar
LOC128462377_chr16_89312046_89423292	89328603	AGAGGCCC others(45): Show AGAGGCCCCTGCTGAGTGAGTGGACACACCCAGGAGCACGGGCGAAATCA GCG	A A	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02572.hp1 HG02809.hp2 HG02109.hp1 HG02572.hp1 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0009 a0001c0001t0000g0011 a0001c0001t0000g0012 a0001c0001t0000g0009 a0001c0001t0000g0011 a0001c0001t0000g0012	3	366	0.0082	-52	c.10- others(69): Show c.10-11580_10-11529delCGCTGATTTCGCCCGTGCTCCTGGGTGT GTCCACTCACTCAGCAGGGGCCTC		LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1						chr16	TogoVar
LOC128462377_chr16_89312046_89423292	89328809	CGGAGGCC others(45): Show CGGAGGCCCCTGCTGAGTGAGTGGACATACCCAGGAGCACGGGCGAAATC AGT	C C	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01243.hp1 HG02258.hp1 others(11): Show HG01081.hp2 HG01243.hp1 HG02258.hp1 HG02559.hp2 HG02723.hp2 HG02896.hp1 HG03041.hp1 HG03139.hp2 HG03453.hp2 HG03486.hp2 HG03540.hp1 HG03579.hp2 NA20129.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0020 a0001c0001t0000g0021 a0001c0001t0000g0022 others(11): Show a0001c0001t0000g0020 a0001c0001t0000g0021 a0001c0001t0000g0022 a0001c0001t0000g0023 a0001c0001t0000g0024 a0001c0001t0000g0025 a0001c0001t0000g0026 a0001c0001t0000g0040 a0001c0001t0000g0302 a0001c0001t0000g0303 a0001c0001t0000g0320 a0001c0001t0000g0362 a0001c0001t0000g0363 a0001c0001t0000g0366	14	366	0.0383	-52	c.10- others(69): Show c.10-11786_10-11735delACTGATTTCGCCCGTGCTCCTGGGTATG TCCACTCACTCAGCAGGGGCCTCC		LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1						chr16	TogoVar
LPA_chr6_160526482_160669275	160576366	ACATATAT others(45): Show ACATATATATATATATATATATATGTATATATATATATATATATATATAT GGG	A A	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02970.hp1 HG02647.hp1 HG02970.hp1	a0010 a0010	a0010c0043 a0010c0044 a0010c0043 a0010c0044	a0010c0043t0001 a0010c0044t0001 a0010c0043t0001 a0010c0044t0001	a0010c0043t0001g0108 a0010c0044t0001g0107 a0010c0043t0001g0108 a0010c0044t0001g0107	2	148	0.0135	-52	c.463 others(69): Show c.4631+718_4631+769delCCCATATATATATATATATATATATATA CATATATATATATATATATATATG		LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	28/38						chr6	TogoVar
LRBA_chr4_150259435_151020284	150639739	ATATATAT others(45): Show ATATATATATATATATATATATATATATATATATATATATATATGTGTGT GTG	A A	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00735.hp1 HG02074.hp2 others(6): Show HG00733.hp2 HG00735.hp1 HG02074.hp2 HG02135.hp1 HG03491.hp2 HG03540.hp2 NA18948.hp2 NA18950.hp2 NA18994.hp2	a0001 a0003 a0007 others(1): Show a0001 a0003 a0007 a0018	a0001c0001 a0003c0004 a0003c0042 others(2): Show a0001c0001 a0003c0004 a0003c0042 a0007c0009 a0018c0031	a0001c0001t0001 a0001c0001t0002 a0003c0004t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0003c0004t0003 a0003c0042t0003 a0007c0009t0003 a0018c0031t0002	a0001c0001t0001g0117 a0001c0001t0002g0031 a0001c0001t0002g0043 others(6): Show a0001c0001t0001g0117 a0001c0001t0002g0031 a0001c0001t0002g0043 a0003c0004t0003g0155 a0003c0004t0003g0162 a0003c0042t0003g0180 a0007c0009t0003g0007 a0007c0009t0003g0008 a0018c0031t0002g0039	9	180	0.0500	-52	c.592 others(73): Show c.5922-40660_5922-40609delCACACACACATATATATATATATA TATATATATATATATATATATATATATA		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56						chr4	TogoVar
LRFN5_chr14_41601876_41909549	41673370	GGGGCGGC others(45): Show GGGGCGGCTGGCCGGGCAGGGGGCTGACCCGCCCCCCACCTCACTGCCGG ACC	G G	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02109.hp1 HG02257.hp1 others(8): Show HG01261.hp1 HG02109.hp1 HG02257.hp1 HG02258.hp1 HG02809.hp2 HG03225.hp2 HG03471.hp1 HG03486.hp2 HG03579.hp2 NA18906.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0004 a0001c0001t0005 a0001c0001t0022 others(2): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0022 a0001c0002t0004 a0001c0005t0023	a0001c0001t0004g0033 a0001c0001t0004g0034 a0001c0001t0004g0035 others(8): Show a0001c0001t0004g0033 a0001c0001t0004g0034 a0001c0001t0004g0035 a0001c0001t0004g0036 a0001c0001t0004g0223 a0001c0001t0005g0001 a0001c0001t0005g0002 a0001c0001t0005g0004 a0001c0001t0022g0003 a0001c0002t0004g0224 a0001c0005t0023g0126	11	280	0.0393	-52	c.-19 others(73): Show c.-197+64825_-197+64876delAGGGGGCTGACCCGCCCCCCACCT CACTGCCGGACCGGGCGGCTGGCCGGGC		LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRGUK_chr7_134122340_134269595	134231580	CTCCCTCC others(45): Show CTCCCTCCCTTCCTCCCTTCCTTCCTCCCTCCGTCCCTCTCTTCCTCCCT CCG	C C	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00438.hp2 HG00621.hp2 others(42): Show HG00408.hp1 HG00438.hp2 HG00621.hp2 HG01099.hp1 HG01123.hp1 HG01261.hp2 HG01358.hp2 HG01361.hp2 HG01952.hp2 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02080.hp1 HG02129.hp2 HG02135.hp2 HG02155.hp1 HG02273.hp2 HG02523.hp2 HG02602.hp1 HG02735.hp2 HG03490.hp1 HG04228.hp1 NA18941.hp2 NA18946.hp1 NA18948.hp2 NA18951.hp2 NA18964.hp2 NA18965.hp2 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18970.hp2 NA18979.hp2 NA18990.hp2 NA18999.hp2 NA19004.hp2 NA19054.hp2 NA19060.hp1 NA19062.hp2 NA19067.hp2 NA19070.hp1 NA19075.hp2 NA19079.hp2 NA19084.hp2 NA19090.hp1	a0002 a0005 a0014 others(2): Show a0002 a0005 a0014 a0015 a0016	a0002c0002 a0002c0024 a0005c0006 others(3): Show a0002c0002 a0002c0024 a0005c0006 a0014c0025 a0015c0023 a0016c0026	a0002c0002t0001 a0002c0002t0002 a0002c0024t0003 others(4): Show a0002c0002t0001 a0002c0002t0002 a0002c0024t0003 a0005c0006t0001 a0014c0025t0001 a0015c0023t0002 a0016c0026t0001	a0002c0002t0001g0014 a0002c0002t0001g0015 a0002c0002t0001g0016 others(42): Show a0002c0002t0001g0014 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0042 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0046 a0002c0002t0001g0047 a0002c0002t0001g0048 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0051 a0002c0002t0001g0052 a0002c0002t0001g0053 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0056 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0062 a0002c0002t0001g0063 a0002c0002t0001g0064 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0070 a0002c0002t0001g0073 a0002c0002t0001g0074 a0002c0002t0001g0075 a0002c0002t0001g0150 a0002c0002t0001g0204 a0002c0002t0002g0019 a0002c0002t0002g0061 a0002c0024t0003g0219 a0005c0006t0001g0152 a0005c0006t0001g0153 a0005c0006t0001g0181 a0005c0006t0001g0182 a0005c0006t0001g0183 a0014c0025t0001g0057 a0015c0023t0002g0072 a0016c0026t0001g0069	45	220	0.2046	-52	c.198 others(71): Show c.1983+9743_1983+9794delTCCGTCCCTCTCTTCCTCCCTCCGTC CCTCCCTTCCTCCCTTCCTTCCTCCC		LRGUK	ENSG00000155530.4	transcript	ENST00000285928.3	protein_coding	16/19					INFO_REALIGN_3_PRIME	chr7	TogoVar
LRP2_chr2_169122109_169367534	169299070	GGAAAGAA others(45): Show GGAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG AAA	G G	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG04199.hp2 HG03139.hp1 HG04199.hp2	a0012 a0025 a0012 a0025	a0012c0077 a0025c0147 a0012c0077 a0025c0147	a0012c0077t0001 a0025c0147t0002 a0012c0077t0001 a0025c0147t0002	a0012c0077t0001g0012 a0025c0147t0002g0065 a0012c0077t0001g0012 a0025c0147t0002g0065	2	250	0.0080	-52	c.428 others(69): Show c.428-4412_428-4361delTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCCTTCTTTCTTTCTTTC		LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	4/78						chr2	TogoVar
LRP5_chr11_68307591_68454275	68390682	CGTGGACG others(45): Show CGTGGACGCAGCCTCGCCCTGCCGCTGTGGTCGGGTTTCAGTGGCCTCGT CCT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00558.hp2 HG00621.hp1 others(44): Show HG00140.hp2 HG00558.hp2 HG00621.hp1 HG01070.hp2 HG01074.hp1 HG01081.hp2 HG01167.hp1 HG01169.hp1 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01433.hp2 HG01884.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG02015.hp1 HG02055.hp2 HG02071.hp1 HG02109.hp2 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02258.hp1 HG02615.hp2 HG02818.hp1 HG02965.hp2 HG03130.hp2 HG03139.hp1 HG03209.hp2 HG03225.hp1 HG03516.hp2 HG03579.hp2 NA18906.hp2 NA18941.hp1 NA18942.hp1 NA18946.hp2 NA18952.hp2 NA18955.hp1 NA18966.hp2 NA18983.hp1 NA18998.hp1 NA19079.hp1 NA19084.hp2 NA19088.hp2 NA20752.hp2	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0009 a0015	a0001c0001 a0001c0002 a0001c0004 others(15): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0007 a0001c0009 a0001c0030 a0001c0043 a0001c0046 a0002c0003 a0002c0037 a0003c0006 a0003c0011 a0003c0014 a0003c0016 a0004c0008 a0009c0048 a0015c0039	a0001c0001t0001 a0001c0002t0001 a0001c0004t0001 others(15): Show a0001c0001t0001 a0001c0002t0001 a0001c0004t0001 a0001c0005t0001 a0001c0007t0001 a0001c0009t0001 a0001c0030t0001 a0001c0043t0001 a0001c0046t0001 a0002c0003t0001 a0002c0037t0001 a0003c0006t0001 a0003c0011t0001 a0003c0014t0001 a0003c0016t0001 a0004c0008t0001 a0009c0048t0001 a0015c0039t0001	a0001c0001t0001g0088 a0001c0001t0001g0096 a0001c0001t0001g0097 others(44): Show a0001c0001t0001g0088 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0100 a0001c0001t0001g0104 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0175 a0001c0002t0001g0009 a0001c0002t0001g0013 a0001c0002t0001g0182 a0001c0002t0001g0183 a0001c0002t0001g0184 a0001c0002t0001g0187 a0001c0002t0001g0188 a0001c0002t0001g0189 a0001c0002t0001g0191 a0001c0002t0001g0192 a0001c0002t0001g0195 a0001c0004t0001g0098 a0001c0004t0001g0099 a0001c0004t0001g0112 a0001c0005t0001g0014 a0001c0007t0001g0015 a0001c0007t0001g0016 a0001c0007t0001g0101 a0001c0007t0001g0102 a0001c0007t0001g0152 a0001c0009t0001g0146 a0001c0030t0001g0010 a0001c0043t0001g0179 a0001c0046t0001g0137 a0002c0003t0001g0012 a0002c0037t0001g0168 a0003c0006t0001g0023 a0003c0006t0001g0024 a0003c0011t0001g0151 a0003c0014t0001g0006 a0003c0016t0001g0027 a0004c0008t0001g0066 a0004c0008t0001g0141 a0004c0008t0001g0196 a0004c0008t0001g0197 a0004c0008t0001g0198 a0004c0008t0001g0200 a0009c0048t0001g0185 a0015c0039t0001g0190	47	212	0.2217	-52	c.158 others(69): Show c.1584+682_1584+733delTGTGGACGCAGCCTCGCCCTGCCGCTGT GGTCGGGTTTCAGTGGCCTCGTCC		LRP5	ENSG00000162337.12	transcript	ENST00000294304.12	protein_coding	7/22					INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC14_chr8_144512992_144530172	144522160	TGCCGGCC others(45): Show TGCCGGCCAGTCCTTGCTCTTCCCACCTTTCGGAGGCCCAAGATCCTACT GTG	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18947.hp2 NA18947.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0051 a0001c0002t0051	a0001c0002t0051g0001 a0001c0002t0051g0001	1	414	0.0024	-52	c.69 others(61): Show c.692_*743delTCCTTGCTCTTCCCACCTTTCGGAGGCCCAAGATCC TACTGTGGCCGGCCAG		LRRC14	ENSG00000160959.8	transcript	ENST00000292524.6	protein_coding	4/4				692	INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRC24_chr8_144517388_144532033	144522160	TGCCGGCC others(45): Show TGCCGGCCAGTCCTTGCTCTTCCCACCTTTCGGAGGCCCAAGATCCTACT GTG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18947.hp2 NA18947.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	398	0.0025	-52	c.26 others(61): Show c.263_*314delCACAGTAGGATCTTGGGCCTCCGAAAGGTGGGAAGA GCAAGGACTGGCCGGC		LRRC24	ENSG00000254402.7	transcript	ENST00000529415.7	protein_coding					227		chr8	TogoVar
LRRC27_chr10_132327193_132386508	132358783	GTGGTGGA others(45): Show GTGGTGGAGTGTGGGGAGGAGCCGAGGTGGTGGAGCGTGGGAAGGAGCCG AGC	G G	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02723.hp1 HG02886.hp1 others(3): Show HG02145.hp2 HG02723.hp1 HG02886.hp1 HG02886.hp2 HG03098.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0002 a0001c0001t0045 a0001c0003t0006 a0001c0001t0002 a0001c0001t0045 a0001c0003t0006	a0001c0001t0002g0004 a0001c0001t0002g0007 a0001c0001t0002g0119 others(3): Show a0001c0001t0002g0004 a0001c0001t0002g0007 a0001c0001t0002g0119 a0001c0001t0002g0120 a0001c0001t0045g0121 a0001c0003t0006g0080	6	290	0.0207	-52	c.117 others(71): Show c.1171-2665_1171-2614delTGTGGGGAGGAGCCGAGGTGGTGGAG CGTGGGAAGGAGCCGAGCTGGTGGAG		LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132358931	CAGTGTGG others(45): Show CAGTGTGGGGAGGAGCCAAGGTGGTGGAGTGTGGGGAGGAGCCGAGGTGG TGG	C C	intron_variant intron_variant	MODIFIER	NA18947.hp2 NA19009.hp2 NA18947.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0076 a0001c0001t0001g0077	2	290	0.0069	-52	c.117 others(71): Show c.1171-2523_1171-2472delTGTGGGGAGGAGCCAAGGTGGTGGAG TGTGGGGAGGAGCCGAGGTGGTGGAG		LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132358940	GAGGAGCC others(45): Show GAGGAGCCAAGGTGGTGGAGTGTGGGGAGGAGCCGAGGTGGTGGAGCGTG GGA	G G	intron_variant intron_variant	MODIFIER	HG03942.hp1 NA19011.hp2 NA19082.hp2 HG03942.hp1 NA19011.hp2 NA19082.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0037 a0001c0001t0001 a0001c0001t0002 a0001c0001t0037	a0001c0001t0001g0141 a0001c0001t0002g0185 a0001c0001t0037g0217 a0001c0001t0001g0141 a0001c0001t0002g0185 a0001c0001t0037g0217	3	290	0.0103	-52	c.117 others(71): Show c.1171-2509_1171-2458delAAGGTGGTGGAGTGTGGGGAGGAGCC GAGGTGGTGGAGCGTGGGAAGGAGCC		LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132358948	AAGGTGGT others(45): Show AAGGTGGTGGAGTGTGGGGAGGAGCCGAGGTGGTGGAGCGTGGGAAGGAG CCG	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 NA18966.hp1 NA19000.hp2 others(2): Show HG00099.hp1 NA18966.hp1 NA19000.hp2 NA19005.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0054 a0001c0002t0001 a0001c0002t0003 a0001c0001t0054 a0001c0002t0001 a0001c0002t0003	a0001c0001t0054g0019 a0001c0002t0001g0260 a0001c0002t0001g0263 others(2): Show a0001c0001t0054g0019 a0001c0002t0001g0260 a0001c0002t0001g0263 a0001c0002t0003g0230 a0001c0002t0003g0246	5	290	0.0172	-52	c.117 others(71): Show c.1171-2497_1171-2446delTGTGGGGAGGAGCCGAGGTGGTGGAG CGTGGGAAGGAGCCGAGGTGGTGGAG		LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364748	GCCCACAC others(45): Show GCCCACACTTACACTCATGCTTACATCTACCTCCACGCCCACACTCACAC CCA	G G	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0203 a0001c0001t0009g0203	1	290	0.0035	-52	c.129 others(69): Show c.1290-662_1290-611delTCATGCTTACATCTACCTCCACGCCCAC ACTCACACCCACCCACACTTACAC		LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC7_chr1_69562922_70149364	69614006	GTGATAAT others(45): Show GTGATAATTATCATTCATAAAGTTTCAGACATTTGAAAATTATCATTTAT GAA	G G	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02630.hp2 HG02486.hp2 HG02630.hp2	a0001 a0001	a0001c0003 a0001c0017 a0001c0003 a0001c0017	a0001c0003t0031 a0001c0017t0052 a0001c0003t0031 a0001c0017t0052	a0001c0003t0031g0034 a0001c0017t0052g0017 a0001c0003t0031g0034 a0001c0017t0052g0017	2	108	0.0185	-52	c.2+4 others(67): Show c.2+45400_2+45451delAAAATTATCATTTATGAATGATAATTATCA TTCATAAAGTTTCAGACATTTG		LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69717790	GAAAGAAA others(45): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA AAA	G G	intron_variant intron_variant	MODIFIER	HG03942.hp2 HG03942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0086 a0001c0001t0086	a0001c0001t0086g0092 a0001c0001t0086g0092	1	108	0.0093	-52	c.100 others(71): Show c.100+39315_100+39366delAGAAAGAAAGAAAGAAAGAAAGAAAG AAAGAAAGAAAGAAAGAAAGAAAAAA		LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69717801	AGAAAGAA others(45): Show AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAGAAAGA AAG	A A	intron_variant intron_variant	MODIFIER	NA18968.hp1 NA18968.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0036 a0001c0002t0036	a0001c0002t0036g0030 a0001c0002t0036g0030	1	108	0.0093	-52	c.100 others(71): Show c.100+39350_100+39401delAAGAAAGAAAGAAAAAAGAAAGAAAG GAAAGAAAGAAAGAAAGAAAGAAAGA		LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC9_chr14_59915144_60071817	59975099	ATACATAT others(45): Show ATACATATATATATGTATATATATATATGTATATATATATACATATATAT ATG	A A	intron_variant intron_variant	MODIFIER	HG01952.hp1 HG02559.hp2 HG03139.hp2 others(6): Show HG01952.hp1 HG02559.hp2 HG03139.hp2 HG03516.hp1 NA18939.hp1 NA18956.hp2 NA19002.hp1 NA19057.hp1 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0011 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0011 a0001c0001t0019 a0001c0001t0041 a0001c0001t0045	a0001c0001t0001g0077 a0001c0001t0001g0237 a0001c0001t0001g0299 others(6): Show a0001c0001t0001g0077 a0001c0001t0001g0237 a0001c0001t0001g0299 a0001c0001t0003g0170 a0001c0001t0011g0021 a0001c0001t0011g0097 a0001c0001t0019g0083 a0001c0001t0041g0229 a0001c0001t0045g0232	9	322	0.0280	-52	c.163 others(69): Show c.1639+394_1639+445delCATATATATATGTATATATATATATGTA TATATATATACATATATATATGTA		LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding	13/32					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC9_chr14_59915144_60071817	59975102	CATATATA others(45): Show CATATATATATGTATATATATATATGTATATATATATACATATATATATG TAT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG03579.hp1 HG01243.hp1 HG03579.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0017 a0001c0002t0002 a0001c0002t0017	a0001c0002t0002g0145 a0001c0002t0017g0174 a0001c0002t0002g0145 a0001c0002t0017g0174	2	322	0.0062	-52	c.163 others(69): Show c.1639+418_1639+469delTGTATATATATATACATATATATATGTA TATATATATATGTATATATATATA		LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding	13/32					INFO_REALIGN_3_PRIME	chr14	TogoVar
LSG1_chr3_194635791_194677191	194645523	CACACACA others(45): Show CACACACAGACAGACACACACACACACACACACACACACACACACACAGA CAG	C C	intron_variant intron_variant	MODIFIER	HG02258.hp2 NA18955.hp1 NA18977.hp1 others(5): Show HG02258.hp2 NA18955.hp1 NA18977.hp1 NA18983.hp2 NA18994.hp2 NA18998.hp1 NA19011.hp2 NA19077.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0002c0002t0001 a0002c0002t0009 a0001c0001t0003 a0002c0002t0001 a0002c0002t0009	a0001c0001t0003g0246 a0002c0002t0001g0010 a0002c0002t0001g0011 others(2): Show a0001c0001t0003g0246 a0002c0002t0001g0010 a0002c0002t0001g0011 a0002c0002t0001g0012 a0002c0002t0009g0344	8	408	0.0196	-52	c.162 others(69): Show c.1623+589_1623+640delCTGTCTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTCTGTCTGTGTGT		LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13						chr3	TogoVar
LSG1_chr3_194635791_194677191	194645531	GACAGACA others(45): Show GACAGACACACACACACACACACACACACACACACACACAGACAGACACA CAC	G G	intron_variant intron_variant	MODIFIER	NA19012.hp1 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0075 a0001c0001t0075	a0001c0001t0075g0272 a0001c0001t0075g0272	1	408	0.0025	-52	c.162 others(69): Show c.1623+581_1623+632delGTGTGTGTCTGTCTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTCTGT		LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13						chr3	TogoVar
LSM8_chr7_118179164_118209035	118206968	TTATATAT others(45): Show TTATATATATATATATATATATATATATATATATATATATATATATATAT ATA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp1 HG01070.hp2 HG01071.hp2 others(45): Show HG00323.hp1 HG01070.hp2 HG01071.hp2 HG01346.hp2 HG01496.hp2 HG01516.hp1 HG01517.hp2 HG01952.hp1 HG01975.hp1 HG02109.hp2 HG02132.hp2 HG02135.hp2 HG02293.hp2 HG02615.hp2 HG02723.hp2 HG02738.hp1 HG02895.hp2 HG02897.hp2 HG02965.hp1 HG03017.hp2 HG03041.hp2 HG03195.hp2 HG03225.hp1 HG03486.hp2 HG03491.hp1 HG03492.hp2 HG03669.hp1 HG03942.hp2 NA18943.hp2 NA18947.hp1 NA18951.hp2 NA18952.hp1 NA18954.hp1 NA18964.hp1 NA18972.hp2 NA18977.hp2 NA18982.hp2 NA18989.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19011.hp1 NA19012.hp2 NA19057.hp1 NA19064.hp1 NA19068.hp1 NA19072.hp2 NA19083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0009 a0001c0001t0023 others(10): Show a0001c0001t0004 a0001c0001t0009 a0001c0001t0023 a0001c0001t0037 a0001c0001t0038 a0001c0001t0048 a0001c0001t0094 a0001c0001t0095 a0001c0001t0096 a0001c0001t0097 a0001c0001t0098 a0001c0001t0099 a0001c0001t0100	a0001c0001t0004g0005 a0001c0001t0004g0028 a0001c0001t0004g0029 others(15): Show a0001c0001t0004g0005 a0001c0001t0004g0028 a0001c0001t0004g0029 a0001c0001t0004g0059 a0001c0001t0004g0060 a0001c0001t0009g0007 a0001c0001t0009g0030 a0001c0001t0023g0017 a0001c0001t0037g0031 a0001c0001t0038g0007 a0001c0001t0048g0028 a0001c0001t0094g0005 a0001c0001t0095g0007 a0001c0001t0096g0007 a0001c0001t0097g0061 a0001c0001t0098g0027 a0001c0001t0099g0027 a0001c0001t0100g0005	48	414	0.1159	-52	c.14 others(65): Show c.14967_*15018delTATATATATATATATATATATATATATATATA TATATATATATATATATATA		LSM8	ENSG00000128534.8	transcript	ENST00000249299.7	protein_coding					2934		chr7	TogoVar
LTBP1_chr2_32941953_33404509	33135520	AACGTGGA others(45): Show AACGTGGATTTGGGGAAGACAGACTGGTAGATTACTCTCAGTACTCCTTT TTT	A A	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG03017.hp1 HG03831.hp1 HG00738.hp1 HG03017.hp1 HG03831.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0004 a0001c0003t0005 a0001c0002t0004 a0001c0003t0005	a0001c0002t0004g0104 a0001c0002t0004g0120 a0001c0003t0005g0146 a0001c0002t0004g0104 a0001c0002t0004g0120 a0001c0003t0005g0146	3	164	0.0183	-52	c.120 others(69): Show c.1201+610_1201+661delTTTACGTGGATTTGGGGAAGACAGACTG GTAGATTACTCTCAGTACTCCTTT		LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	5/33					INFO_REALIGN_3_PRIME	chr2	TogoVar
LY96_chr8_73986392_74034079	73996364	CCTTCATT others(45): Show CCTTCATTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00639.hp1 HG01255.hp2 others(4): Show HG00099.hp1 HG00639.hp1 HG01255.hp2 HG01433.hp1 HG02559.hp2 NA18942.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0283 a0001c0001t0001g0284 a0001c0001t0001g0285 others(4): Show a0001c0001t0001g0283 a0001c0001t0001g0284 a0001c0001t0001g0285 a0001c0001t0001g0286 a0001c0001t0001g0287 a0001c0001t0001g0288 a0001c0001t0001g0289	7	314	0.0223	-52	c.112 others(69): Show c.112+4814_112+4865delCATTCCTTTCTTTCTTTCTTTCTTTCTT TCTTTCTTTCTTTCTTTCTTTCTT		LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4					INFO_REALIGN_3_PRIME	chr8	TogoVar
LY96_chr8_73986392_74034079	73996368	CATTCCTT others(45): Show CATTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTT	C C	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG01175.hp2 HG01261.hp1 others(8): Show HG00733.hp1 HG01175.hp2 HG01261.hp1 HG01346.hp1 HG01981.hp2 HG01993.hp2 HG02040.hp2 HG02148.hp2 HG02293.hp1 HG04115.hp1 NA19005.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0249 a0001c0001t0001g0250 others(7): Show a0001c0001t0001g0003 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0257	11	314	0.0350	-52	c.112 others(69): Show c.112+4815_112+4866delATTCCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTTCTTTCTTTCTTTCTTT		LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4						chr8	TogoVar
LYNX1_chr8_142766202_142782202	142777431	CCCCGCCT others(45): Show CCCCGCCTCCTGGGCACCCGCCGAGCCGAGTTCACCGCAGGCCCCGCCCC GGA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp2 HG01884.hp1 HG01884.hp2 others(43): Show HG01109.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01975.hp2 HG02040.hp1 HG02056.hp1 HG02145.hp1 HG02300.hp1 HG02451.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp2 HG02735.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02965.hp1 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03139.hp2 HG03209.hp1 HG03471.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 NA18906.hp1 NA18967.hp1 NA18982.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19067.hp2 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0001t0012 a0001c0001t0014 a0001c0001t0018 a0001c0001t0021 a0001c0001t0037 a0001c0001t0043 a0001c0001t0056 a0002c0002t0024	a0001c0001t0001g0001 a0001c0001t0001g0020 a0001c0001t0001g0031 others(21): Show a0001c0001t0001g0001 a0001c0001t0001g0020 a0001c0001t0001g0031 a0001c0001t0001g0043 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0103 a0001c0001t0002g0104 a0001c0001t0003g0004 a0001c0001t0004g0005 a0001c0001t0005g0010 a0001c0001t0008g0015 a0001c0001t0008g0076 a0001c0001t0012g0016 a0001c0001t0014g0037 a0001c0001t0014g0106 a0001c0001t0018g0046 a0001c0001t0018g0047 a0001c0001t0018g0062 a0001c0001t0021g0029 a0001c0001t0037g0056 a0001c0001t0043g0107 a0001c0001t0056g0064 a0002c0002t0024g0027	46	444	0.1036	-52	c.-54 others(61): Show c.-542_-491delTCCGGGGCGGGGCCTGCGGTGAACTCGGCTCGGCGG GTGCCCAGGAGGCGGG		LYNX1	ENSG00000180155.20	transcript	ENST00000652477.1	protein_coding					230		chr8	TogoVar
LYSMD3_chr5_90510626_90534584	90530018	GCATCTCG others(45): Show GCATCTCGAATTTTCTTTAGGGTGGGAAAGGACACCTCAAAAACACTGTT GAC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0087 a0001c0001t0003g0087	1	410	0.0024	-52	c.-63 others(61): Show c.-634_-583delGTCAACAGTGTTTTTGAGGTGTCCTTTCCCACCCTA AAGAAAATTCGAGATG		LYSMD3	ENSG00000176018.13	transcript	ENST00000315948.11	protein_coding					435		chr5	TogoVar
MAGI2_chr7_78012055_79458667	79324619	AATATATA others(45): Show AATATATATATTATATATATATAAAATATATATATATTATATATATATAA AAT	A A	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01261.hp2 HG02897.hp2 others(3): Show HG00738.hp1 HG01261.hp2 HG02897.hp2 HG03041.hp2 HG03130.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0011 others(1): Show a0001c0001 a0001c0003 a0001c0011 a0001c0012	a0001c0001t0001 a0001c0003t0003 a0001c0003t0004 others(2): Show a0001c0001t0001 a0001c0003t0003 a0001c0003t0004 a0001c0011t0001 a0001c0012t0001	a0001c0001t0001g0015 a0001c0001t0001g0036 a0001c0003t0003g0001 others(3): Show a0001c0001t0001g0015 a0001c0001t0001g0036 a0001c0003t0003g0001 a0001c0003t0004g0002 a0001c0011t0001g0023 a0001c0012t0001g0022	6	40	0.1500	-52	c.301 others(73): Show c.301+128349_301+128400delATTTTATATATATATAATATATAT ATATTTTATATATATATAATATATATAT		MAGI2	ENSG00000187391.23	transcript	ENST00000354212.9	protein_coding	1/21						chr7	TogoVar
MANEAL_chr1_37788847_37806133	37800046	AGTGGCAC others(45): Show AGTGGCACGAGGGCACCCAGATTGAGAAGGCCATTCCCAAGAAGACACCC ACC	A A	frameshift_variant frameshift_variant	HIGH	HG03209.hp2 HG03209.hp2	a0007 a0007	a0007c0008 a0007c0008	a0007c0008t0001 a0007c0008t0001	a0007c0008t0001g0039 a0007c0008t0001g0039	1	438	0.0023	-52	c.121 others(61): Show c.1218_1269delGTGGCACGAGGGCACCCAGATTGAGAAGGCCATTCC CAAGAAGACACCCACC	p.Glu others(5): Show p.Glu406fs	MANEAL	ENSG00000185090.15	transcript	ENST00000373045.11	protein_coding	4/4	1554/2640	1218/1374	406/457			chr1	TogoVar

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