Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZZEF1_chr17_3999445_4148030	4036817	ACTCTCT ACTCTCT	A A	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01169.hp2 HG02015.hp2 others(4): Show HG01168.hp1 HG01169.hp2 HG02015.hp2 HG02145.hp2 HG02630.hp1 NA19054.hp2 NA21309.hp1	a0002 a0005 a0006 a0002 a0005 a0006	a0002c0002 a0002c0012 a0005c0009 others(3): Show a0002c0002 a0002c0012 a0005c0009 a0005c0025 a0006c0008 a0006c0024	a0002c0002t0002 a0002c0012t0002 a0005c0009t0003 others(3): Show a0002c0002t0002 a0002c0012t0002 a0005c0009t0003 a0005c0025t0003 a0006c0008t0002 a0006c0024t0003	a0002c0002t0002g0168 a0002c0012t0002g0218 a0005c0009t0003g0228 others(4): Show a0002c0002t0002g0168 a0002c0012t0002g0218 a0005c0009t0003g0228 a0005c0025t0003g0229 a0005c0025t0003g0230 a0006c0008t0002g0243 a0006c0024t0003g0241	7	296	0.0237	-6	c.630 others(25): Show c.6307-2531_6307-2526delAGAGAG		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	39/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4112033	AATATAT AATATAT	A A	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00673.hp2 HG01109.hp2 others(16): Show HG00597.hp2 HG00673.hp2 HG01109.hp2 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01934.hp1 HG02040.hp1 HG02486.hp1 HG02622.hp2 HG02738.hp2 HG03130.hp2 HG03239.hp2 HG03492.hp2 HG03579.hp1 HG03942.hp1 NA18942.hp2 NA19057.hp2 NA19074.hp1	a0001 a0003 a0004 others(4): Show a0001 a0003 a0004 a0006 a0008 a0012 a0022	a0001c0001 a0001c0016 a0001c0049 others(6): Show a0001c0001 a0001c0016 a0001c0049 a0003c0003 a0004c0005 a0006c0027 a0008c0007 a0012c0013 a0022c0056	a0001c0001t0001 a0001c0001t0026 a0001c0016t0001 others(7): Show a0001c0001t0001 a0001c0001t0026 a0001c0016t0001 a0001c0049t0001 a0003c0003t0004 a0004c0005t0006 a0006c0027t0003 a0008c0007t0008 a0012c0013t0003 a0022c0056t0001	a0001c0001t0001g0031 a0001c0001t0001g0039 a0001c0001t0001g0044 others(16): Show a0001c0001t0001g0031 a0001c0001t0001g0039 a0001c0001t0001g0044 a0001c0001t0001g0049 a0001c0001t0001g0079 a0001c0001t0001g0084 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0123 a0001c0001t0026g0047 a0001c0016t0001g0134 a0001c0049t0001g0080 a0003c0003t0004g0263 a0004c0005t0006g0005 a0004c0005t0006g0007 a0006c0027t0003g0257 a0008c0007t0008g0121 a0012c0013t0003g0071 a0022c0056t0001g0033	19	296	0.0642	-6	c.106 others(23): Show c.1066+570_1066+575delATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4123268	CATATAT CATATAT	C C	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG03139.hp2 HG03492.hp2 others(3): Show HG01192.hp1 HG03139.hp2 HG03492.hp2 NA18971.hp2 NA18977.hp1 NA19030.hp2	a0001 a0004 a0006 others(1): Show a0001 a0004 a0006 a0029	a0001c0001 a0004c0005 a0006c0027 others(1): Show a0001c0001 a0004c0005 a0006c0027 a0029c0034	a0001c0001t0001 a0004c0005t0006 a0006c0027t0003 others(1): Show a0001c0001t0001 a0004c0005t0006 a0006c0027t0003 a0029c0034t0022	a0001c0001t0001g0044 a0001c0001t0001g0095 a0004c0005t0006g0004 others(3): Show a0001c0001t0001g0044 a0001c0001t0001g0095 a0004c0005t0006g0004 a0004c0005t0006g0011 a0006c0027t0003g0257 a0029c0034t0022g0143	6	296	0.0203	-6	c.499 others(21): Show c.499+633_499+638delATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	2/54						chr17	TogoVar