Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
NKD2_chr5_1003802_1043943	1004195	GGTGTGTG others(1): Show GGTGTGTGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02683.hp2 HG03669.hp1 HG04228.hp2 others(3): Show HG02683.hp2 HG03669.hp1 HG04228.hp2 NA18972.hp1 NA20752.hp2 NA21309.hp1	a0001 a0005 a0008 a0001 a0005 a0008	a0001c0001 a0005c0009 a0008c0011 a0001c0001 a0005c0009 a0008c0011	a0001c0001t0002 a0005c0009t0002 a0008c0011t0016 a0001c0001t0002 a0005c0009t0002 a0008c0011t0016	a0001c0001t0002g0026 a0001c0001t0002g0141 a0001c0001t0002g0247 others(3): Show a0001c0001t0002g0026 a0001c0001t0002g0141 a0001c0001t0002g0247 a0001c0001t0002g0261 a0005c0009t0002g0249 a0008c0011t0016g0263	6	319	0.0188	-8	c.-48 others(19): Show c.-4862_-4855delGTGTGTGT	NKD2	ENSG00000145506.14	transcript	ENST00000296849.10	protein_coding		4606		chr5	TogoVar
NKD2_chr5_1003802_1043943	1009108	AGGGCGGG others(1): Show AGGGCGGGC	A A	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00323.hp2 HG01175.hp2 others(4): Show HG00099.hp2 HG00323.hp2 HG01175.hp2 HG02148.hp2 HG02735.hp2 HG03834.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0265 a0001c0001t0006g0266 a0001c0001t0006g0267 others(4): Show a0001c0001t0006g0265 a0001c0001t0006g0266 a0001c0001t0006g0267 a0001c0001t0006g0268 a0001c0001t0006g0269 a0001c0001t0006g0270 a0001c0001t0006g0271	7	319	0.0219	-8	c.25+ others(19): Show c.25+36_25+43delGGCGGGCG	NKD2	ENSG00000145506.14	transcript	ENST00000296849.10	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr5	TogoVar
NKD2_chr5_1003802_1043943	1035294	ATGAATGA others(1): Show ATGAATGAG	A A	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02055.hp2 HG02258.hp1 others(6): Show HG01243.hp2 HG02055.hp2 HG02258.hp1 HG02486.hp2 HG02572.hp2 HG02965.hp2 HG03098.hp2 HG03195.hp1 NA18522.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0009 a0001c0001 a0005c0009	a0001c0001t0003 a0001c0001t0004 a0001c0001t0010 others(1): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0010 a0005c0009t0010	a0001c0001t0003g0004 a0001c0001t0003g0112 a0001c0001t0003g0113 others(4): Show a0001c0001t0003g0004 a0001c0001t0003g0112 a0001c0001t0003g0113 a0001c0001t0004g0057 a0001c0001t0004g0058 a0001c0001t0010g0004 a0005c0009t0010g0111	9	319	0.0282	-8	c.575 others(21): Show c.575-91_575-84delATGAGTGA	NKD2	ENSG00000145506.14	transcript	ENST00000296849.10	protein_coding	7/9		INFO_REALIGN_3_PRIME	chr5	TogoVar
NKTR_chr3_42595686_42653735	42603360	TAAAAAAA others(1): Show TAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG03139.hp1 HG03453.hp1 others(4): Show HG00639.hp2 HG03139.hp1 HG03453.hp1 NA18906.hp1 NA19030.hp2 NA19076.hp1 NA19080.hp1	a0001 a0002 a0001 a0002	a0001c0008 a0002c0004 a0001c0008 a0002c0004	a0001c0008t0024 a0002c0004t0015 a0002c0004t0047 a0001c0008t0024 a0002c0004t0015 a0002c0004t0047	a0001c0008t0024g0293 a0001c0008t0024g0294 a0002c0004t0015g0055 others(4): Show a0001c0008t0024g0293 a0001c0008t0024g0294 a0002c0004t0015g0055 a0002c0004t0015g0056 a0002c0004t0015g0057 a0002c0004t0015g0059 a0002c0004t0047g0058	7	352	0.0199	-8	c.58+ others(23): Show c.58+2314_58+2321delAAAAAAAA	NKTR	ENSG00000114857.19	transcript	ENST00000232978.13	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr3	TogoVar
NKX1-2_chr10_124440243_124455035	124440530	CTTTTTTT others(1): Show CTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp2 HG00323.hp2 HG00438.hp2 others(26): Show HG00099.hp2 HG00323.hp2 HG00438.hp2 HG01109.hp1 HG01257.hp2 HG01258.hp2 HG01261.hp2 HG01952.hp1 HG02015.hp2 HG02523.hp1 HG02602.hp2 HG02735.hp2 HG02886.hp1 NA18943.hp2 NA18960.hp2 NA18961.hp2 NA18970.hp1 NA18970.hp2 NA18973.hp2 NA18977.hp2 NA19002.hp2 NA19057.hp2 NA19058.hp1 NA19065.hp2 NA19079.hp2 NA19087.hp2 NA19090.hp2 NA20752.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0015 a0001c0001 a0001c0015	a0001c0001t0002 a0001c0015t0002 a0001c0001t0002 a0001c0015t0002	a0001c0001t0002g0002 a0001c0001t0002g0036 a0001c0015t0002g0035 a0001c0001t0002g0002 a0001c0001t0002g0036 a0001c0015t0002g0035	29	446	0.0650	-8	c.68 others(19): Show c.6891_*6898delAAAAAAAA	NKX1-2	ENSG00000229544.9	transcript	ENST00000451024.5	protein_coding		4712		chr10	TogoVar
NKX2-2_chr20_21506017_21519064	21506665	AGTGTGTG others(1): Show AGTGTGTGT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp1 HG00544.hp2 HG00609.hp2 others(93): Show HG00438.hp1 HG00544.hp2 HG00609.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01106.hp2 HG01167.hp1 HG01168.hp2 HG01169.hp2 HG01257.hp2 HG01261.hp2 HG01361.hp1 HG01433.hp1 HG01891.hp2 HG01934.hp1 HG01952.hp1 HG01952.hp2 HG01978.hp2 HG01993.hp1 HG02015.hp2 HG02040.hp2 HG02055.hp1 HG02074.hp1 HG02109.hp2 HG02148.hp2 HG02165.hp1 HG02280.hp1 HG02293.hp1 HG02486.hp1 HG02559.hp2 HG02572.hp2 HG02622.hp1 HG02647.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp2 HG02886.hp1 HG02895.hp2 HG02922.hp1 HG02965.hp1 HG02970.hp2 HG03017.hp2 HG03041.hp1 HG03098.hp2 HG03195.hp1 HG03239.hp1 HG03453.hp1 HG03471.hp1 HG03471.hp2 HG03491.hp1 HG03516.hp2 HG03579.hp1 HG04199.hp1 NA18522.hp1 NA18747.hp2 NA18906.hp2 NA18940.hp1 NA18943.hp2 NA18947.hp2 NA18950.hp2 NA18959.hp1 NA18960.hp1 NA18966.hp2 NA18973.hp2 NA18977.hp2 NA18980.hp2 NA18981.hp1 NA18982.hp1 NA18992.hp2 NA18993.hp2 NA18999.hp1 NA18999.hp2 NA19007.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp2 NA19056.hp1 NA19057.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19074.hp2 NA19077.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19088.hp2 NA19090.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0004 a0001c0001 a0005c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0019 a0001c0001t0023 a0005c0004t0001	a0001c0001t0001g0001 a0001c0001t0002g0002 a0001c0001t0004g0005 others(3): Show a0001c0001t0001g0001 a0001c0001t0002g0002 a0001c0001t0004g0005 a0001c0001t0019g0026 a0001c0001t0023g0029 a0005c0004t0001g0020	96	394	0.2437	-8	c.52 others(19): Show c.5250_*5257delACACACAC	NKX2-2	ENSG00000125820.6	transcript	ENST00000377142.5	protein_coding		4351		chr20	TogoVar
NKX2-6_chr8_23696740_23711756	23710263	GGTGTGTG others(1): Show GGTGTGTGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp2 HG01106.hp1 HG01168.hp2 others(13): Show HG00738.hp2 HG01106.hp1 HG01168.hp2 HG01255.hp1 HG01516.hp2 HG01517.hp2 HG01934.hp2 HG02257.hp1 HG02683.hp1 HG03098.hp2 HG03490.hp2 HG03491.hp2 HG03704.hp1 HG04228.hp1 NA19072.hp1 NA19078.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0010 a0001c0001 a0001c0002 a0001c0010	a0001c0001t0003 a0001c0002t0004 a0001c0010t0003 a0001c0001t0003 a0001c0002t0004 a0001c0010t0003	a0001c0001t0003g0003 a0001c0002t0004g0004 a0001c0010t0003g0050 a0001c0001t0003g0003 a0001c0002t0004g0004 a0001c0010t0003g0050	16	434	0.0369	-8	c.-36 others(19): Show c.-3673_-3666delACACACAC	NKX2-6	ENSG00000180053.8	transcript	ENST00000325017.4	protein_coding		3508		chr8	TogoVar
NKX3-2_chr4_13535830_13549508	13538372	TTTTCTTT others(1): Show TTTTCTTTC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp2 HG00609.hp2 HG01069.hp1 others(38): Show HG00280.hp2 HG00609.hp2 HG01069.hp1 HG01071.hp1 HG01109.hp1 HG01168.hp2 HG01257.hp2 HG01258.hp1 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01884.hp2 HG01928.hp1 HG01928.hp2 HG01943.hp1 HG01943.hp2 HG01978.hp2 HG01981.hp2 HG01993.hp1 HG02074.hp1 HG02155.hp2 HG02717.hp2 HG03942.hp1 HG04184.hp1 HG04204.hp2 NA18747.hp1 NA18939.hp1 NA18942.hp2 NA18943.hp1 NA18946.hp2 NA18956.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18988.hp2 NA19054.hp1 NA19063.hp2 NA19090.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp1	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0001c0002 a0002c0011 others(1): Show a0001c0001 a0001c0002 a0002c0011 a0008c0005	a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 others(2): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 a0002c0011t0001 a0008c0005t0001	a0001c0001t0001g0001 a0001c0001t0001g0006 a0001c0002t0001g0004 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0006 a0001c0002t0001g0004 a0001c0002t0003g0003 a0002c0011t0001g0030 a0008c0005t0001g0016	41	390	0.1051	-8	c.36 others(19): Show c.3613_*3620delGAAAGAAA	NKX3-2	ENSG00000109705.8	transcript	ENST00000382438.6	protein_coding		2457		chr4	TogoVar
NKX6-1_chr4_84486985_84504292	84489018	CGTGTGTG others(1): Show CGTGTGTGT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00609.hp1 HG00642.hp2 HG00673.hp1 others(25): Show HG00609.hp1 HG00642.hp2 HG00673.hp1 HG00735.hp1 HG01884.hp1 HG02145.hp2 HG02155.hp1 HG02258.hp2 HG02559.hp1 HG02809.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG03139.hp2 HG03195.hp1 HG03453.hp1 HG03704.hp2 NA18959.hp2 NA18962.hp2 NA18982.hp1 NA18990.hp1 NA18995.hp1 NA18999.hp1 NA19001.hp2 NA19006.hp1 NA19043.hp2 NA19079.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0027	a0001c0001t0001g0001 a0001c0001t0002g0002 a0001c0001t0002g0006 others(10): Show a0001c0001t0001g0001 a0001c0001t0002g0002 a0001c0001t0002g0006 a0001c0001t0002g0025 a0001c0001t0002g0040 a0001c0001t0002g0043 a0001c0001t0004g0004 a0001c0001t0004g0062 a0001c0001t0005g0005 a0001c0001t0005g0016 a0001c0001t0006g0030 a0001c0001t0009g0078 a0001c0001t0027g0087	28	436	0.0642	-8	c.42 others(19): Show c.4263_*4270delACACACAC	NKX6-1	ENSG00000163623.10	transcript	ENST00000295886.5	protein_coding		2966		chr4	TogoVar
NKX6-1_chr4_84486985_84504292	84489646	CCACACAC others(1): Show CCACACACA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01192.hp1 HG01943.hp2 HG02273.hp1 others(18): Show HG01192.hp1 HG01943.hp2 HG02273.hp1 HG02280.hp1 HG02615.hp2 HG02630.hp1 HG02738.hp1 HG03139.hp1 HG03471.hp1 HG03579.hp1 NA18948.hp1 NA18948.hp2 NA18963.hp1 NA18983.hp1 NA18985.hp1 NA18989.hp1 NA18992.hp1 NA19006.hp2 NA19043.hp1 NA19058.hp1 NA19090.hp2	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0002c0004 a0006c0007 a0001c0001 a0002c0004 a0006c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0002c0004t0006 a0006c0007t0002	a0001c0001t0001g0001 a0001c0001t0002g0002 a0001c0001t0002g0018 others(6): Show a0001c0001t0001g0001 a0001c0001t0002g0002 a0001c0001t0002g0018 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0003g0003 a0001c0001t0004g0064 a0002c0004t0006g0029 a0006c0007t0002g0047	21	436	0.0482	-8	c.36 others(19): Show c.3635_*3642delTGTGTGTG	NKX6-1	ENSG00000163623.10	transcript	ENST00000295886.5	protein_coding		2338		chr4	TogoVar
NKX6-3_chr8_41640177_41655817	41643132	TTTTCTTT others(1): Show TTTTCTTTC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00408.hp1 others(62): Show HG00140.hp1 HG00140.hp2 HG00408.hp1 HG00642.hp1 HG00733.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp2 HG01074.hp1 HG01081.hp1 HG01167.hp1 HG01167.hp2 HG01192.hp2 HG01261.hp1 HG01261.hp2 HG01515.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp2 HG02040.hp2 HG02129.hp2 HG02886.hp2 HG02896.hp1 HG03017.hp2 HG03139.hp1 HG03239.hp2 HG04204.hp2 NA18942.hp1 NA18945.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp2 NA18953.hp1 NA18953.hp2 NA18959.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp2 NA18972.hp1 NA18975.hp1 NA18980.hp2 NA18981.hp2 NA18982.hp1 NA18986.hp2 NA18987.hp2 NA18988.hp1 NA18988.hp2 NA18993.hp2 NA18997.hp2 NA18998.hp2 NA18999.hp1 NA19009.hp1 NA19009.hp2 NA19066.hp1 NA19067.hp2 NA19070.hp1 NA19070.hp2 NA19077.hp2 NA19083.hp1 NA19085.hp2 NA19088.hp1 NA20129.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0011 a0001c0001t0013 a0001c0001t0016 a0001c0001t0019 a0003c0003t0003	a0001c0001t0001g0001 a0001c0001t0002g0004 a0001c0001t0002g0006 others(15): Show a0001c0001t0001g0001 a0001c0001t0002g0004 a0001c0001t0002g0006 a0001c0001t0002g0016 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0047 a0001c0001t0002g0059 a0001c0001t0002g0061 a0001c0001t0003g0002 a0001c0001t0003g0035 a0001c0001t0005g0008 a0001c0001t0005g0010 a0001c0001t0011g0020 a0001c0001t0013g0033 a0001c0001t0016g0026 a0001c0001t0019g0063 a0003c0003t0003g0024	65	434	0.1498	-8	c.33 others(19): Show c.3309_*3316delGAAAGAAA	NKX6-3	ENSG00000165066.13	transcript	ENST00000518699.4	protein_coding		2044		chr8	TogoVar
NLE1_chr17_35123730_35147303	35143163	CAATAAAT others(1): Show CAATAAATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(159): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp2 HG00733.hp2 HG00735.hp2 HG01069.hp2 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp2 HG01256.hp2 HG01358.hp1 HG01358.hp2 HG01433.hp2 HG01516.hp1 HG01517.hp1 HG01517.hp2 HG01891.hp1 HG01943.hp1 HG01978.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp2 HG02056.hp1 HG02083.hp1 HG02129.hp1 HG02129.hp2 HG02145.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02293.hp2 HG02300.hp1 HG02300.hp2 HG02523.hp1 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02809.hp2 HG02922.hp2 HG03017.hp1 HG03195.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp2 HG03654.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp2 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp2 HG04115.hp2 HG04199.hp1 HG04204.hp2 NA18612.hp2 NA18906.hp1 NA18940.hp1 NA18941.hp1 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18944.hp2 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18956.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18967.hp2 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18973.hp1 NA18977.hp1 NA18980.hp1 NA18981.hp2 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18986.hp1 NA18988.hp1 NA18988.hp2 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA18998.hp2 NA19000.hp1 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19006.hp1 NA19006.hp2 NA19009.hp1 NA19010.hp1 NA19058.hp1 NA19058.hp2 NA19060.hp2 NA19064.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp2 NA19086.hp1 NA19087.hp2 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA21309.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0008	a0001c0001 a0001c0004 a0001c0006 others(5): Show a0001c0001 a0001c0004 a0001c0006 a0001c0014 a0002c0002 a0002c0015 a0003c0003 a0008c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0010 a0001c0001t0014 a0001c0004t0001 a0001c0006t0001 a0001c0014t0001 a0002c0002t0002 a0002c0015t0022 a0003c0003t0003 a0008c0011t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(44): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0029 a0001c0001t0001g0046 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0065 a0001c0001t0001g0069 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0086 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0098 a0001c0001t0002g0016 a0001c0001t0004g0013 a0001c0001t0004g0022 a0001c0001t0004g0038 a0001c0001t0004g0078 a0001c0001t0005g0028 a0001c0001t0005g0108 a0001c0001t0006g0030 a0001c0001t0008g0023 a0001c0001t0010g0063 a0001c0001t0014g0077 a0001c0004t0001g0012 a0001c0006t0001g0040 a0001c0014t0001g0067 a0002c0002t0002g0003 a0002c0002t0002g0026 a0002c0002t0002g0084 a0002c0002t0002g0092 a0002c0015t0022g0085 a0003c0003t0003g0005 a0003c0003t0003g0007 a0003c0003t0003g0014 a0003c0003t0003g0093 a0008c0011t0001g0059	162	400	0.4050	-8	c.-89 others(17): Show c.-896_-889delTATTTATT	NLE1	ENSG00000073536.18	transcript	ENST00000442241.9	protein_coding		861		chr17	TogoVar
NLGN1_chr3_173392744_174299372	173470332	CCATCATA others(1): Show CCATCATAT	C C	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG02717.hp2 HG02922.hp2 others(4): Show HG02602.hp1 HG02717.hp2 HG02922.hp2 HG03098.hp2 HG03486.hp1 NA18906.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 others(4): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0020 a0001c0001t0033 a0001c0002t0010	a0001c0001t0003g0043 a0001c0001t0005g0033 a0001c0001t0006g0008 others(4): Show a0001c0001t0003g0043 a0001c0001t0005g0033 a0001c0001t0006g0008 a0001c0001t0009g0028 a0001c0001t0020g0034 a0001c0001t0033g0044 a0001c0002t0010g0010	7	44	0.1591	-8	c.-32 others(29): Show c.-321+72278_-321+72285delCATCATAT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173517750	TTATCTAT others(1): Show TTATCTATC	T T	intron_variant intron_variant	MODIFIER	HG03139.hp1 NA18906.hp1 HG03139.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0008 a0001c0007t0027 a0001c0001t0008 a0001c0007t0027	a0001c0001t0008g0042 a0001c0007t0027g0020 a0001c0001t0008g0042 a0001c0007t0027g0020	2	44	0.0455	-8	c.-32 others(29): Show c.-320-86484_-320-86477delTATCTATC	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173539633	CACATATA others(1): Show CACATATAT	C C	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02818.hp1 NA18522.hp2 HG02615.hp2 HG02818.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0036 a0001c0001t0038 a0001c0001t0018 a0001c0001t0036 a0001c0001t0038	a0001c0001t0018g0004 a0001c0001t0036g0035 a0001c0001t0038g0019 a0001c0001t0018g0004 a0001c0001t0036g0035 a0001c0001t0038g0019	3	44	0.0682	-8	c.-32 others(29): Show c.-320-64636_-320-64629delCATATATA	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173598425	TATCTAAT others(1): Show TATCTAATC	T T	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03098.hp2 HG03486.hp1 others(2): Show HG03041.hp2 HG03098.hp2 HG03486.hp1 NA19240.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0031 a0001c0001t0033 others(2): Show a0001c0001t0003 a0001c0001t0031 a0001c0001t0033 a0001c0001t0034 a0001c0002t0032	a0001c0001t0003g0043 a0001c0001t0031g0001 a0001c0001t0033g0044 others(2): Show a0001c0001t0003g0043 a0001c0001t0031g0001 a0001c0001t0033g0044 a0001c0001t0034g0025 a0001c0002t0032g0013	5	44	0.1136	-8	c.-32 others(27): Show c.-320-5849_-320-5842delAATCATCT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173600192	CATGTGTG others(1): Show CATGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03098.hp2 HG03486.hp1 others(1): Show HG03041.hp2 HG03098.hp2 HG03486.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0031 a0001c0001t0033 others(1): Show a0001c0001t0003 a0001c0001t0031 a0001c0001t0033 a0001c0001t0034	a0001c0001t0003g0043 a0001c0001t0031g0001 a0001c0001t0033g0044 others(1): Show a0001c0001t0003g0043 a0001c0001t0031g0001 a0001c0001t0033g0044 a0001c0001t0034g0025	4	44	0.0909	-8	c.-32 others(27): Show c.-320-4085_-320-4078delTGTGTGTA	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173762965	TACACACA others(1): Show TACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02615.hp2 HG02109.hp1 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0039 a0001c0001t0038 a0001c0001t0039	a0001c0001t0038g0019 a0001c0001t0039g0006 a0001c0001t0038g0019 a0001c0001t0039g0006	2	44	0.0455	-8	c.554 others(27): Show c.554-44687_554-44680delCACACACA	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173765052	ATGTGTGT others(1): Show ATGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02922.hp2 NA20129.hp1 HG02572.hp1 HG02922.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0025 a0001c0001t0034 a0001c0001t0009 a0001c0001t0025 a0001c0001t0034	a0001c0001t0009g0028 a0001c0001t0025g0002 a0001c0001t0034g0025 a0001c0001t0009g0028 a0001c0001t0025g0002 a0001c0001t0034g0025	3	44	0.0682	-8	c.554 others(27): Show c.554-42588_554-42581delGTGTGTGT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173777631	GTCTATCT others(1): Show GTCTATCTA	G G	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02717.hp2 HG02723.hp1 others(1): Show HG01255.hp1 HG02717.hp2 HG02723.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0018 a0001c0001t0002 a0001c0001t0006 a0001c0001t0018	a0001c0001t0002g0007 a0001c0001t0002g0039 a0001c0001t0006g0008 others(1): Show a0001c0001t0002g0007 a0001c0001t0002g0039 a0001c0001t0006g0008 a0001c0001t0018g0004	4	44	0.0909	-8	c.554 others(27): Show c.554-30010_554-30003delTATCTATC	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173785006	TATATAGA others(1): Show TATATAGAC	T T	intron_variant intron_variant	MODIFIER	HG02055.hp2 NA18522.hp2 HG02055.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0036 a0001c0001t0021 a0001c0001t0036	a0001c0001t0021g0036 a0001c0001t0036g0035 a0001c0001t0021g0036 a0001c0001t0036g0035	2	44	0.0455	-8	c.554 others(27): Show c.554-22672_554-22665delTATAGACA	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173816070	TATATTTA others(1): Show TATATTTAA	T T	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp2 HG02055.hp1 others(15): Show HG01192.hp1 HG01192.hp2 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02451.hp2 HG02602.hp1 HG02615.hp1 HG02723.hp1 HG02818.hp2 HG02922.hp1 HG03041.hp1 HG03098.hp2 HG03139.hp2 HG03486.hp1 HG04184.hp2 NA18906.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0016 a0001c0001t0017 a0001c0001t0019 a0001c0001t0020 a0001c0001t0026 a0001c0001t0033 a0001c0001t0037 a0001c0001t0039 a0001c0001t0040 a0001c0002t0010 a0001c0002t0012 a0001c0002t0024 a0001c0005t0035	a0001c0001t0001g0032 a0001c0001t0002g0039 a0001c0001t0003g0043 others(15): Show a0001c0001t0001g0032 a0001c0001t0002g0039 a0001c0001t0003g0043 a0001c0001t0004g0024 a0001c0001t0005g0033 a0001c0001t0016g0031 a0001c0001t0017g0023 a0001c0001t0019g0003 a0001c0001t0020g0034 a0001c0001t0026g0012 a0001c0001t0033g0044 a0001c0001t0037g0009 a0001c0001t0039g0006 a0001c0001t0040g0005 a0001c0002t0010g0010 a0001c0002t0012g0015 a0001c0002t0024g0037 a0001c0005t0035g0016	18	44	0.4091	-8	c.706 others(25): Show c.706+8241_706+8248delATTTAAAT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173829564	GTGTGTGT others(1): Show GTGTGTGTT	G G	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02055.hp2 HG02523.hp1 others(4): Show HG01255.hp1 HG02055.hp2 HG02523.hp1 HG02572.hp1 HG03098.hp1 HG04184.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0014 a0001c0001t0015 others(4): Show a0001c0001t0002 a0001c0001t0014 a0001c0001t0015 a0001c0001t0021 a0001c0001t0025 a0001c0001t0036 a0001c0002t0013	a0001c0001t0002g0007 a0001c0001t0014g0030 a0001c0001t0015g0027 others(4): Show a0001c0001t0002g0007 a0001c0001t0014g0030 a0001c0001t0015g0027 a0001c0001t0021g0036 a0001c0001t0025g0002 a0001c0001t0036g0035 a0001c0002t0013g0018	7	44	0.1591	-8	c.706 others(27): Show c.706+21740_706+21747delTTGTGTGT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173861515	CGTGTGTG others(1): Show CGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp2 HG02055.hp1 others(8): Show HG01192.hp1 HG01192.hp2 HG02055.hp1 HG02451.hp2 HG02572.hp1 HG02615.hp1 HG03139.hp2 HG03486.hp1 HG04184.hp2 NA19240.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0016 others(8): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0016 a0001c0001t0019 a0001c0001t0025 a0001c0001t0034 a0001c0001t0037 a0001c0001t0040 a0001c0002t0010 a0001c0002t0012 a0001c0005t0035	a0001c0001t0001g0032 a0001c0001t0003g0043 a0001c0001t0016g0031 others(8): Show a0001c0001t0001g0032 a0001c0001t0003g0043 a0001c0001t0016g0031 a0001c0001t0019g0003 a0001c0001t0025g0002 a0001c0001t0034g0025 a0001c0001t0037g0009 a0001c0001t0040g0005 a0001c0002t0010g0010 a0001c0002t0012g0015 a0001c0005t0035g0016	11	44	0.2500	-8	c.706 others(27): Show c.706+53718_706+53725delGTGTGTGT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173881107	TTTTTTTT others(1): Show TTTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02818.hp1 HG03041.hp2 others(1): Show HG02717.hp1 HG02818.hp1 HG03041.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0018 a0001c0001t0028 others(1): Show a0001c0001t0008 a0001c0001t0018 a0001c0001t0028 a0001c0001t0031	a0001c0001t0008g0042 a0001c0001t0018g0004 a0001c0001t0028g0029 others(1): Show a0001c0001t0008g0042 a0001c0001t0018g0004 a0001c0001t0028g0029 a0001c0001t0031g0001	4	44	0.0909	-8	c.706 others(27): Show c.706+73276_706+73283delTTTTTTTG	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6			chr3	TogoVar
NLGN1_chr3_173392744_174299372	173918696	GTGTGTGT others(1): Show GTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG02523.hp1 HG02523.hp2 HG02818.hp2 others(7): Show HG02523.hp1 HG02523.hp2 HG02818.hp2 HG02922.hp1 HG02922.hp2 HG03098.hp2 HG04184.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0004 a0001c0001t0009 others(7): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0009 a0001c0001t0015 a0001c0001t0033 a0001c0001t0034 a0001c0002t0010 a0001c0002t0013 a0001c0002t0024 a0001c0003t0023	a0001c0001t0001g0022 a0001c0001t0004g0024 a0001c0001t0009g0028 others(7): Show a0001c0001t0001g0022 a0001c0001t0004g0024 a0001c0001t0009g0028 a0001c0001t0015g0027 a0001c0001t0033g0044 a0001c0001t0034g0025 a0001c0002t0010g0010 a0001c0002t0013g0018 a0001c0002t0024g0037 a0001c0003t0023g0011	10	44	0.2273	-8	c.706 others(29): Show c.706+110866_706+110873delGTGTGTAT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173993654	TGATAGAT others(1): Show TGATAGATA	T T	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02818.hp1 HG02717.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0028 a0001c0001t0018 a0001c0001t0028	a0001c0001t0018g0004 a0001c0001t0028g0029 a0001c0001t0018g0004 a0001c0001t0028g0029	2	44	0.0455	-8	c.706 others(29): Show c.706+185856_706+185863delATAGATAG	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174007949	AGTGTGTG others(1): Show AGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02109.hp1 HG02523.hp1 others(8): Show HG01255.hp1 HG02109.hp1 HG02523.hp1 HG02523.hp2 HG02615.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG03098.hp1 HG03098.hp2 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0014 a0001c0001t0015 a0001c0001t0030 a0001c0001t0033 a0001c0001t0038 a0001c0001t0039 a0001c0002t0013	a0001c0001t0001g0022 a0001c0001t0002g0007 a0001c0001t0002g0039 others(8): Show a0001c0001t0001g0022 a0001c0001t0002g0007 a0001c0001t0002g0039 a0001c0001t0006g0008 a0001c0001t0014g0030 a0001c0001t0015g0027 a0001c0001t0030g0040 a0001c0001t0033g0044 a0001c0001t0038g0019 a0001c0001t0039g0006 a0001c0002t0013g0018	11	44	0.2500	-8	c.706 others(29): Show c.706+200144_706+200151delGTGTGTGT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174066516	GTCTCTCT others(1): Show GTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG03041.hp1 HG04184.hp1 HG02602.hp1 HG03041.hp1 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0005 a0001c0001t0017 a0001c0002t0013 a0001c0001t0005 a0001c0001t0017 a0001c0002t0013	a0001c0001t0005g0033 a0001c0001t0017g0023 a0001c0002t0013g0018 a0001c0001t0005g0033 a0001c0001t0017g0023 a0001c0002t0013g0018	3	44	0.0682	-8	c.707 others(29): Show c.707-208757_707-208750delCTCTCTCT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174076679	TAGAGAGA others(1): Show TAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02922.hp1 HG03098.hp2 others(1): Show HG02055.hp1 HG02922.hp1 HG03098.hp2 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0033 a0001c0002t0013 a0001c0002t0024 others(1): Show a0001c0001t0033 a0001c0002t0013 a0001c0002t0024 a0001c0005t0035	a0001c0001t0033g0044 a0001c0002t0013g0018 a0001c0002t0024g0037 others(1): Show a0001c0001t0033g0044 a0001c0002t0013g0018 a0001c0002t0024g0037 a0001c0005t0035g0016	4	44	0.0909	-8	c.707 others(29): Show c.707-198597_707-198590delAGAGAGAG	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174088230	AAGGTTCA others(1): Show AAGGTTCAG	A A	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02572.hp1 HG02602.hp1 others(5): Show HG02109.hp1 HG02572.hp1 HG02602.hp1 HG02717.hp2 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0005 a0001c0001t0006 a0001c0001t0014 others(5): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0014 a0001c0001t0017 a0001c0001t0025 a0001c0001t0033 a0001c0001t0039 a0001c0002t0013	a0001c0001t0005g0033 a0001c0001t0006g0008 a0001c0001t0014g0030 others(5): Show a0001c0001t0005g0033 a0001c0001t0006g0008 a0001c0001t0014g0030 a0001c0001t0017g0023 a0001c0001t0025g0002 a0001c0001t0033g0044 a0001c0001t0039g0006 a0001c0002t0013g0018	8	44	0.1818	-8	c.707 others(29): Show c.707-187083_707-187076delGGTTCAGA	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174088757	AAAATAAA others(1): Show AAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02818.hp1 HG02723.hp2 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0030 a0001c0001t0018 a0001c0001t0030	a0001c0001t0018g0004 a0001c0001t0030g0040 a0001c0001t0018g0004 a0001c0001t0030g0040	2	44	0.0455	-8	c.707 others(29): Show c.707-186514_707-186507delTAAATAAA	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174107011	CACACACA others(1): Show CACACACAG	C C	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02572.hp2 HG01192.hp1 HG02572.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0012 a0001c0001t0003 a0001c0002t0012	a0001c0001t0003g0026 a0001c0002t0012g0015 a0001c0001t0003g0026 a0001c0002t0012g0015	2	44	0.0455	-8	c.707 others(29): Show c.707-168302_707-168295delCACACAGA	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174107017	CAGAGAGA others(1): Show CAGAGAGAG	C C	intron_variant intron_variant	MODIFIER	HG03139.hp2 NA18522.hp2 NA19240.hp2 HG03139.hp2 NA18522.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0036 a0001c0001t0037 a0001c0002t0010 a0001c0001t0036 a0001c0001t0037 a0001c0002t0010	a0001c0001t0036g0035 a0001c0001t0037g0009 a0001c0002t0010g0010 a0001c0001t0036g0035 a0001c0001t0037g0009 a0001c0002t0010g0010	3	44	0.0682	-8	c.707 others(29): Show c.707-168270_707-168263delGAGAGAGA	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174146093	TTTCCTTC others(1): Show TTTCCTTCC	T T	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01255.hp1 HG03139.hp2 HG01192.hp2 HG01255.hp1 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0037 a0001c0001t0001 a0001c0001t0002 a0001c0001t0037	a0001c0001t0001g0032 a0001c0001t0002g0007 a0001c0001t0037g0009 a0001c0001t0001g0032 a0001c0001t0002g0007 a0001c0001t0037g0009	3	44	0.0682	-8	c.707 others(29): Show c.707-129168_707-129161delTCCTTCCT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174201346	TGAAGGAA others(1): Show TGAAGGAAG	T T	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02615.hp2 HG03486.hp1 HG01255.hp1 HG02615.hp2 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0038 a0001c0001t0002 a0001c0001t0003 a0001c0001t0038	a0001c0001t0002g0007 a0001c0001t0003g0043 a0001c0001t0038g0019 a0001c0001t0002g0007 a0001c0001t0003g0043 a0001c0001t0038g0019	3	44	0.0682	-8	c.707 others(27): Show c.707-73945_707-73938delGGAAGGAA	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174234985	CTTTTTTT others(1): Show CTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02451.hp2 HG02717.hp2 others(5): Show HG02109.hp2 HG02451.hp2 HG02717.hp2 HG02723.hp1 HG02818.hp2 HG02922.hp2 NA19240.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 others(5): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0001c0001t0009 a0001c0001t0026 a0001c0001t0040 a0001c0002t0010 a0001c0003t0023	a0001c0001t0002g0039 a0001c0001t0004g0024 a0001c0001t0006g0008 others(5): Show a0001c0001t0002g0039 a0001c0001t0004g0024 a0001c0001t0006g0008 a0001c0001t0009g0028 a0001c0001t0026g0012 a0001c0001t0040g0005 a0001c0002t0010g0010 a0001c0003t0023g0011	8	44	0.1818	-8	c.707 others(27): Show c.707-40307_707-40300delTTTTTTTT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174265904	GTGTATAT others(1): Show GTGTATATA	G G	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG03098.hp2 HG04184.hp1 HG01192.hp1 HG03098.hp2 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0033 a0001c0002t0012 a0001c0002t0013 a0001c0001t0033 a0001c0002t0012 a0001c0002t0013	a0001c0001t0033g0044 a0001c0002t0012g0015 a0001c0002t0013g0018 a0001c0001t0033g0044 a0001c0002t0012g0015 a0001c0002t0013g0018	3	44	0.0682	-8	c.707 others(25): Show c.707-9391_707-9384delATATATGT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174272646	TATGGATG others(1): Show TATGGATGG	T T	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG02451.hp1 HG02922.hp2 HG01255.hp2 HG02451.hp1 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0006 a0001c0001 a0001c0004 a0001c0006	a0001c0001t0009 a0001c0004t0007 a0001c0006t0022 a0001c0001t0009 a0001c0004t0007 a0001c0006t0022	a0001c0001t0009g0028 a0001c0004t0007g0041 a0001c0006t0022g0021 a0001c0001t0009g0028 a0001c0004t0007g0041 a0001c0006t0022g0021	3	44	0.0682	-8	c.707 others(25): Show c.707-2654_707-2647delGGATGGAT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174289961	ATATATAT others(1): Show ATATATATG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02055.hp2 HG02523.hp1 HG03098.hp1 others(3): Show HG02055.hp2 HG02523.hp1 HG03098.hp1 HG03098.hp2 NA18522.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0015 a0001c0001t0020 others(3): Show a0001c0001t0014 a0001c0001t0015 a0001c0001t0020 a0001c0001t0021 a0001c0001t0033 a0001c0001t0036	a0001c0001t0014g0030 a0001c0001t0015g0027 a0001c0001t0020g0034 others(3): Show a0001c0001t0014g0030 a0001c0001t0015g0027 a0001c0001t0020g0034 a0001c0001t0021g0036 a0001c0001t0033g0044 a0001c0001t0036g0035	6	44	0.1364	-8	c.86 others(19): Show c.8666_*8673delGTATATAT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	7/7	8666	INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN2_chr17_7402845_7424860	7424547	TTTCCTTC others(1): Show TTTCCTTCC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00408.hp1 HG00408.hp2 HG00438.hp2 others(58): Show HG00408.hp1 HG00408.hp2 HG00438.hp2 HG00558.hp1 HG00597.hp2 HG01106.hp1 HG01167.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01433.hp2 HG01928.hp1 HG01993.hp2 HG02559.hp2 HG02615.hp2 HG02630.hp1 HG02735.hp1 HG02735.hp2 HG02809.hp1 HG02818.hp2 HG02922.hp2 HG03041.hp2 HG03098.hp2 HG03486.hp1 HG03492.hp2 HG03831.hp1 HG03831.hp2 HG04184.hp2 HG04204.hp2 NA18612.hp1 NA18940.hp1 NA18945.hp1 NA18945.hp2 NA18948.hp1 NA18948.hp2 NA18959.hp1 NA18959.hp2 NA18960.hp2 NA18964.hp2 NA18965.hp2 NA18970.hp1 NA18974.hp2 NA18975.hp1 NA18989.hp1 NA19001.hp1 NA19010.hp1 NA19011.hp1 NA19011.hp2 NA19066.hp1 NA19066.hp2 NA19068.hp1 NA19070.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp1 NA19090.hp2 NA19240.hp1 NA20129.hp2 NA20300.hp2 NA20805.hp1	a0000 a0001 a0000 a0001	a0000c0008 a0001c0001 a0001c0002 others(7): Show a0000c0008 a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0012 a0001c0013 a0001c0015	a0000c0008t0001 a0001c0001t0001 a0001c0001t0003 others(18): Show a0000c0008t0001 a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0009 a0001c0002t0002 a0001c0002t0006 a0001c0002t0024 a0001c0002t0045 a0001c0003t0004 a0001c0003t0050 a0001c0004t0001 a0001c0004t0006 a0001c0004t0057 a0001c0005t0002 a0001c0005t0046 a0001c0006t0008 a0001c0006t0018 a0001c0012t0010 a0001c0013t0005 a0001c0015t0001	a0000c0008t0001g0003 a0001c0001t0001g0001 a0001c0001t0001g0003 others(38): Show a0000c0008t0001g0003 a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0018 a0001c0001t0001g0023 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0044 a0001c0001t0001g0093 a0001c0001t0003g0001 a0001c0001t0003g0023 a0001c0001t0003g0116 a0001c0001t0006g0019 a0001c0001t0009g0001 a0001c0001t0009g0015 a0001c0002t0002g0013 a0001c0002t0002g0020 a0001c0002t0002g0106 a0001c0002t0002g0108 a0001c0002t0002g0113 a0001c0002t0006g0020 a0001c0002t0024g0020 a0001c0002t0045g0089 a0001c0003t0004g0004 a0001c0003t0050g0119 a0001c0004t0001g0001 a0001c0004t0001g0003 a0001c0004t0006g0041 a0001c0004t0057g0003 a0001c0005t0002g0010 a0001c0005t0002g0045 a0001c0005t0046g0002 a0001c0006t0008g0016 a0001c0006t0008g0054 a0001c0006t0008g0070 a0001c0006t0018g0042 a0001c0012t0010g0110 a0001c0013t0005g0031 a0001c0015t0001g0003	61	418	0.1459	-8	c.67 others(19): Show c.6749_*6756delTTCCTTCC	NLGN2	ENSG00000169992.10	transcript	ENST00000302926.7	protein_coding		4688		chr17	TogoVar
NLGN3_chrX_71139841_71176201	71146124	TTCTCTCT others(1): Show TTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0114 a0001c0001t0001g0114	1	278	0.0036	-8	c.-20 others(27): Show c.-201+1183_-201+1190delTCTCTCTC	NLGN3	ENSG00000196338.15	transcript	ENST00000358741.4	protein_coding	1/7		INFO_REALIGN_3_PRIME	chrX	TogoVar
NLGN3_chrX_71139841_71176201	71146149	TCTCTCAC others(1): Show TCTCTCACA	T T	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02723.hp2 HG02630.hp1 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0002 a0001c0003t0001 a0001c0001t0002 a0001c0003t0001	a0001c0001t0002g0135 a0001c0003t0001g0136 a0001c0001t0002g0135 a0001c0003t0001g0136	2	278	0.0072	-8	c.-20 others(27): Show c.-201+1187_-201+1194delTCTCACAC	NLGN3	ENSG00000196338.15	transcript	ENST00000358741.4	protein_coding	1/7		INFO_REALIGN_3_PRIME	chrX	TogoVar
NLGN3_chrX_71139841_71176201	71146151	TCTCACAC others(1): Show TCTCACACA	T T	intron_variant intron_variant	MODIFIER	NA18999.hp1 NA18999.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0139 a0001c0001t0001g0139	1	278	0.0036	-8	c.-20 others(27): Show c.-201+1189_-201+1196delTCACACAC	NLGN3	ENSG00000196338.15	transcript	ENST00000358741.4	protein_coding	1/7		INFO_REALIGN_3_PRIME	chrX	TogoVar
NLGN3_chrX_71139841_71176201	71146164	CACACACA others(1): Show CACACACAG	C C	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01168.hp2 HG01169.hp1 others(14): Show HG00639.hp2 HG01168.hp2 HG01169.hp1 HG01361.hp2 HG01943.hp1 HG01993.hp2 HG02080.hp1 HG02165.hp2 HG02273.hp1 HG02273.hp2 HG02293.hp2 HG02818.hp1 NA18945.hp1 NA18953.hp1 NA18970.hp1 NA19058.hp1 NA19076.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0001 a0001c0001t0002 a0001c0001t0004	a0001c0001t0001g0161 a0001c0001t0001g0167 a0001c0001t0001g0240 others(11): Show a0001c0001t0001g0161 a0001c0001t0001g0167 a0001c0001t0001g0240 a0001c0001t0002g0003 a0001c0001t0002g0162 a0001c0001t0002g0236 a0001c0001t0002g0237 a0001c0001t0002g0238 a0001c0001t0002g0239 a0001c0001t0002g0243 a0001c0001t0004g0003 a0001c0001t0004g0018 a0001c0001t0004g0241 a0001c0001t0004g0242	17	278	0.0612	-8	c.-20 others(27): Show c.-201+1208_-201+1215delGACACACA	NLGN3	ENSG00000196338.15	transcript	ENST00000358741.4	protein_coding	1/7		INFO_REALIGN_3_PRIME	chrX	TogoVar
NLGN3_chrX_71139841_71176201	71146172	GACACACA others(1): Show GACACACAC	G G	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02109.hp2 NA19012.hp1 HG01978.hp2 HG02109.hp2 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 a0001c0001t0001 a0001c0001t0005 a0001c0001t0006	a0001c0001t0001g0098 a0001c0001t0005g0194 a0001c0001t0006g0195 a0001c0001t0001g0098 a0001c0001t0005g0194 a0001c0001t0006g0195	3	278	0.0108	-8	c.-20 others(27): Show c.-201+1250_-201+1257delCACACACA	NLGN3	ENSG00000196338.15	transcript	ENST00000358741.4	protein_coding	1/7		INFO_REALIGN_3_PRIME	chrX	TogoVar
NLGN3_chrX_71139841_71176201	71157287	CTTATTTA others(1): Show CTTATTTAT	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02572.hp1 HG02896.hp1 others(5): Show HG02055.hp1 HG02572.hp1 HG02896.hp1 HG02897.hp2 HG03130.hp1 HG03195.hp2 HG03209.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 others(5): Show a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0179 a0001c0001t0001g0191 a0001c0001t0001g0193 a0001c0001t0001g0196	8	278	0.0288	-8	c.727 others(25): Show c.727+1954_727+1961delTATTTATT	NLGN3	ENSG00000196338.15	transcript	ENST00000358741.4	protein_coding	5/7		INFO_REALIGN_3_PRIME	chrX	TogoVar
NLGN3_chrX_71139841_71176201	71168817	AAAAAAAA others(1): Show AAAAAAAAG	A A	intron_variant intron_variant	MODIFIER	HG02735.hp1 NA19084.hp1 HG02735.hp1 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0051 a0001c0001t0001g0057 a0001c0001t0001g0051 a0001c0001t0001g0057	2	278	0.0072	-8	c.170 others(25): Show c.1704-433_1704-426delAAAAGAAA	NLGN3	ENSG00000196338.15	transcript	ENST00000358741.4	protein_coding	7/7		INFO_REALIGN_3_PRIME	chrX	TogoVar
NLGN3_chrX_71139841_71176201	71168821	AAAAGAAA others(1): Show AAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02818.hp1 NA18943.hp1 others(1): Show HG02056.hp1 HG02818.hp1 NA18943.hp1 NA18960.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0030 a0001c0001t0001g0055 a0001c0001t0001g0167 others(1): Show a0001c0001t0001g0030 a0001c0001t0001g0055 a0001c0001t0001g0167 a0001c0001t0001g0209	4	278	0.0144	-8	c.170 others(25): Show c.1704-391_1704-384delAAGAAAGA	NLGN3	ENSG00000196338.15	transcript	ENST00000358741.4	protein_coding	7/7		INFO_REALIGN_3_PRIME	chrX	TogoVar
NLGN4X_chrX_5885042_6233867	5913045	GGGAGGGA others(1): Show GGGAGGGAA	G G	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0008 a0001c0003t0008	a0001c0003t0008g0052 a0001c0003t0008g0052	1	128	0.0078	-8	c.626 others(25): Show c.626-3814_626-3807delTTCCCTCC	NLGN4X	ENSG00000146938.16	transcript	ENST00000381095.8	protein_coding	3/5			chrX	TogoVar

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