Joint Open Genome and Omics Platform (JoGo)

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Snpeff haplotype class

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Snpeff annotation impact detail

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Samplehapid

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZZZ3_chr1_77557416_77687658	77634171	AAAATAAA others(1): Show AAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG02165.hp1 NA18612.hp1 NA18973.hp2 others(3): Show HG02165.hp1 NA18612.hp1 NA18973.hp2 NA19004.hp1 NA19009.hp2 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0165 a0001c0001t0001g0186 others(3): Show a0001c0001t0001g0010 a0001c0001t0001g0165 a0001c0001t0001g0186 a0001c0001t0001g0264 a0001c0001t0001g0273 a0001c0001t0001g0274	6	346	0.0173	-8	c.-51 others(23): Show c.-51-774_-51-767delATTTATTT		ZZZ3	ENSG00000036549.13	transcript	ENST00000370801.8	protein_coding	4/14						chr1	TogoVar