Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZZEF1_chr17_3999445_4148030	4112033	AATATATA others(1): Show AATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01243.hp1 HG01261.hp1 others(6): Show HG01106.hp2 HG01243.hp1 HG01261.hp1 HG01928.hp1 HG02615.hp1 HG02976.hp2 HG04115.hp1 NA18941.hp2 NA18982.hp1	a0001 a0003 a0019 others(2): Show a0001 a0003 a0019 a0021 a0024	a0001c0001 a0001c0050 a0003c0003 others(3): Show a0001c0001 a0001c0050 a0003c0003 a0019c0037 a0021c0053 a0024c0047	a0001c0001t0001 a0001c0050t0003 a0003c0003t0013 others(3): Show a0001c0001t0001 a0001c0050t0003 a0003c0003t0013 a0019c0037t0010 a0021c0053t0001 a0024c0047t0003	a0001c0001t0001g0089 a0001c0001t0001g0129 a0001c0001t0001g0137 others(6): Show a0001c0001t0001g0089 a0001c0001t0001g0129 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0050t0003g0119 a0003c0003t0013g0281 a0019c0037t0010g0266 a0021c0053t0001g0069 a0024c0047t0003g0038	9	296	0.0304	-8	c.106 others(25): Show c.1066+568_1066+575delATATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4123268	CATATATA others(1): Show CATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02280.hp2 NA18906.hp2 NA20129.hp2 others(2): Show HG02280.hp2 NA18906.hp2 NA20129.hp2 NA20300.hp2 NA20805.hp1	a0002 a0003 a0004 others(1): Show a0002 a0003 a0004 a0020	a0002c0054 a0003c0044 a0004c0005 others(2): Show a0002c0054 a0003c0044 a0004c0005 a0004c0064 a0020c0043	a0002c0054t0003 a0003c0044t0004 a0004c0005t0011 others(2): Show a0002c0054t0003 a0003c0044t0004 a0004c0005t0011 a0004c0064t0005 a0020c0043t0009	a0002c0054t0003g0028 a0003c0044t0004g0280 a0004c0005t0011g0250 others(2): Show a0002c0054t0003g0028 a0003c0044t0004g0280 a0004c0005t0011g0250 a0004c0064t0005g0239 a0020c0043t0009g0212	5	296	0.0169	-8	c.499 others(23): Show c.499+631_499+638delATATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	2/54						chr17	TogoVar
	ZZZ3_chr1_77557416_77687658	77589412	TTTTATTT others(1): Show TTTTATTTA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00323.hp1 HG00544.hp2 others(74): Show HG00099.hp1 HG00323.hp1 HG00544.hp2 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00642.hp2 HG00733.hp1 HG00735.hp1 HG01069.hp2 HG01071.hp1 HG01074.hp1 HG01123.hp2 HG01168.hp2 HG01169.hp2 HG01175.hp2 HG01256.hp2 HG01516.hp2 HG01884.hp1 HG01934.hp1 HG01952.hp1 HG02055.hp1 HG02071.hp1 HG02083.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp2 HG02165.hp2 HG02273.hp1 HG02280.hp2 HG02615.hp1 HG02630.hp2 HG02809.hp1 HG02896.hp2 HG02922.hp1 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp2 HG03130.hp1 HG03471.hp2 HG03669.hp2 HG03831.hp1 HG03942.hp1 NA18906.hp1 NA18941.hp1 NA18945.hp2 NA18952.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18965.hp1 NA18969.hp1 NA18972.hp1 NA18973.hp1 NA18982.hp1 NA18984.hp2 NA18993.hp1 NA18999.hp1 NA19002.hp2 NA19005.hp1 NA19005.hp2 NA19010.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp2 NA19063.hp1 NA19065.hp2 NA19066.hp1 NA19075.hp2 NA19088.hp2 NA19091.hp1 NA19240.hp2 homoSapiens_chm13v2.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0008c0011 a0001c0001 a0008c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0011 a0001c0001t0012 a0001c0001t0015 a0008c0011t0001	a0001c0001t0001g0003 a0001c0001t0001g0047 a0001c0001t0001g0048 others(73): Show a0001c0001t0001g0003 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0120 a0001c0001t0001g0134 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0142 a0001c0001t0001g0147 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0248 a0001c0001t0002g0196 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0221 a0001c0001t0003g0257 a0001c0001t0003g0258 a0001c0001t0003g0259 a0001c0001t0003g0326 a0001c0001t0003g0331 a0001c0001t0003g0332 a0001c0001t0003g0333 a0001c0001t0003g0342 a0001c0001t0011g0064 a0001c0001t0012g0105 a0001c0001t0015g0260 a0008c0011t0001g0148	77	348	0.2213	-8	c.150 others(27): Show c.1506-4765_1506-4758delTAAATAAA		ZZZ3	ENSG00000036549.13	transcript	ENST00000370801.8	protein_coding	5/14						chr1	TogoVar
	ZZZ3_chr1_77557416_77687658	77620484	TGGAAGGA others(1): Show TGGAAGGAA	T T	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00639.hp2 HG01070.hp2 others(67): Show HG00544.hp1 HG00639.hp2 HG01070.hp2 HG01099.hp1 HG01123.hp1 HG01257.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp2 HG01952.hp2 HG01981.hp1 HG02004.hp1 HG02027.hp2 HG02071.hp2 HG02080.hp2 HG02083.hp1 HG02132.hp2 HG02135.hp1 HG02155.hp1 HG02451.hp1 HG02451.hp2 HG02572.hp2 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp1 HG02735.hp1 HG02738.hp1 HG03225.hp2 HG03490.hp1 HG03492.hp1 HG03579.hp1 HG03579.hp2 HG03654.hp2 HG03704.hp2 HG03831.hp2 HG04115.hp1 HG04115.hp2 HG06807.hp2 NA18940.hp1 NA18943.hp1 NA18945.hp1 NA18955.hp2 NA18956.hp1 NA18960.hp1 NA18961.hp2 NA18964.hp2 NA18965.hp2 NA18967.hp1 NA18968.hp1 NA18972.hp2 NA18984.hp1 NA18990.hp2 NA18992.hp2 NA18994.hp1 NA19002.hp1 NA19007.hp1 NA19010.hp1 NA19012.hp1 NA19030.hp1 NA19056.hp1 NA19062.hp2 NA19067.hp2 NA19074.hp2 NA19075.hp1 NA19079.hp2 NA19084.hp2 NA19088.hp1 NA19091.hp2 NA20805.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0010	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0010c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0001c0001t0016 a0002c0002t0001 a0003c0003t0001 a0010c0009t0002	a0001c0001t0001g0001 a0001c0001t0001g0017 a0001c0001t0001g0018 others(66): Show a0001c0001t0001g0001 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0056 a0001c0001t0001g0130 a0001c0001t0001g0132 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0165 a0001c0001t0001g0166 a0001c0001t0001g0191 a0001c0001t0001g0248 a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0266 a0001c0001t0001g0273 a0001c0001t0001g0340 a0001c0001t0002g0006 a0001c0001t0002g0007 a0001c0001t0002g0008 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0206 a0001c0001t0002g0210 a0001c0001t0002g0211 a0001c0001t0002g0213 a0001c0001t0002g0214 a0001c0001t0002g0220 a0001c0001t0002g0228 a0001c0001t0002g0233 a0001c0001t0002g0234 a0001c0001t0002g0237 a0001c0001t0002g0250 a0001c0001t0002g0251 a0001c0001t0002g0263 a0001c0001t0002g0264 a0001c0001t0002g0284 a0001c0001t0002g0285 a0001c0001t0002g0295 a0001c0001t0002g0296 a0001c0001t0002g0297 a0001c0001t0002g0301 a0001c0001t0002g0322 a0001c0001t0004g0010 a0001c0001t0006g0283 a0001c0001t0006g0287 a0001c0001t0016g0167 a0002c0002t0001g0035 a0002c0002t0001g0121 a0002c0002t0001g0124 a0002c0002t0001g0125 a0003c0003t0001g0180 a0003c0003t0001g0267 a0003c0003t0001g0272 a0010c0009t0002g0229	70	348	0.2012	-8	c.150 others(29): Show c.1505+11358_1505+11365delTTCCTTCC		ZZZ3	ENSG00000036549.13	transcript	ENST00000370801.8	protein_coding	5/14						chr1	TogoVar
	ZZZ3_chr1_77557416_77687658	77634171	AAAATAAA others(1): Show AAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG02165.hp1 NA18612.hp1 NA18973.hp2 others(3): Show HG02165.hp1 NA18612.hp1 NA18973.hp2 NA19004.hp1 NA19009.hp2 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0164 a0001c0001t0001g0185 others(3): Show a0001c0001t0001g0009 a0001c0001t0001g0164 a0001c0001t0001g0185 a0001c0001t0001g0265 a0001c0001t0001g0274 a0001c0001t0001g0275	6	348	0.0172	-8	c.-51 others(23): Show c.-51-774_-51-767delATTTATTT		ZZZ3	ENSG00000036549.13	transcript	ENST00000370801.8	protein_coding	4/14						chr1	TogoVar