Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZZEF1_chr17_3999445_4148030	4117648	C C	CAAAAAAA others(3): Show CAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG03130.hp1 NA18522.hp2 HG02922.hp2 HG03130.hp1 NA18522.hp2	a0006 a0010 a0006 a0010	a0006c0019 a0010c0045 a0006c0019 a0010c0045	a0006c0019t0003 a0010c0045t0003 a0006c0019t0003 a0010c0045t0003	a0006c0019t0003g0222 a0006c0019t0003g0223 a0010c0045t0003g0061 a0006c0019t0003g0222 a0006c0019t0003g0223 a0010c0045t0003g0061	3	296	0.0101	10	c.500 others(25): Show c.500-492_500-483dupTTTTTTTTTT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	2/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4123268	C C	CATATATA others(3): Show CATATATATAT	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG01168.hp1 HG01169.hp2 HG00673.hp1 HG01168.hp1 HG01169.hp2	a0003 a0005 a0003 a0005	a0003c0003 a0005c0025 a0003c0003 a0005c0025	a0003c0003t0004 a0005c0025t0003 a0003c0003t0004 a0005c0025t0003	a0003c0003t0004g0288 a0005c0025t0003g0229 a0005c0025t0003g0230 a0003c0003t0004g0288 a0005c0025t0003g0229 a0005c0025t0003g0230	3	296	0.0101	10	c.499 others(25): Show c.499+629_499+638dupATATATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	2/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4127500	C C	CTCTCTCT others(3): Show CTCTCTCTCAA	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0004 a0003c0003t0004	a0003c0003t0004g0264 a0003c0003t0004g0264	1	296	0.0034	10	c.355 others(27): Show c.355-3450_355-3449insTTGAGAGAGA		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	1/54						chr17	TogoVar