Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

Chr

Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Samplehapid

No_hapid

No_samplehapid

Start

End

Minac

Maxac

Minlen

Maxlen

Sort By

Order by

view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZYG11B_chr1_52721453_52832336	52773627	A A	ATATATAT others(4): Show ATATATATATTT	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG01255.hp2 HG04204.hp1 others(3): Show HG00597.hp1 HG01255.hp2 HG04204.hp1 NA18943.hp2 NA18991.hp1 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0018 a0001c0001t0019 others(2): Show a0001c0001t0001 a0001c0001t0018 a0001c0001t0019 a0001c0001t0030 a0001c0001t0057	a0001c0001t0001g0061 a0001c0001t0001g0092 a0001c0001t0018g0141 others(3): Show a0001c0001t0001g0061 a0001c0001t0001g0092 a0001c0001t0018g0141 a0001c0001t0019g0128 a0001c0001t0030g0070 a0001c0001t0057g0172	6	161	0.0373	11	c.951 others(28): Show c.951+1854_951+1855insATATATATTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52773627	A A	ATATATAT others(4): Show ATATATATTTTT	intron_variant intron_variant	MODIFIER	HG02683.hp2 NA18964.hp2 NA18984.hp1 HG02683.hp2 NA18964.hp2 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0075 a0001c0001t0001g0080 a0001c0001t0001g0142 a0001c0001t0001g0075 a0001c0001t0001g0080 a0001c0001t0001g0142	3	158	0.0190	11	c.951 others(28): Show c.951+1854_951+1855insATATATTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52773628	T T	TATATATA others(4): Show TATATATATATA	intron_variant intron_variant	MODIFIER	HG04228.hp2 NA18989.hp2 NA19000.hp2 others(1): Show HG04228.hp2 NA18989.hp2 NA19000.hp2 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0018 a0001c0001t0056 a0001c0001t0001 a0001c0001t0018 a0001c0001t0056	a0001c0001t0001g0074 a0001c0001t0001g0146 a0001c0001t0018g0079 others(1): Show a0001c0001t0001g0074 a0001c0001t0001g0146 a0001c0001t0018g0079 a0001c0001t0056g0057	4	306	0.0131	11	c.951 others(28): Show c.951+1854_951+1855insATATATATATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13						chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52776229	A A	AAAAATAT others(4): Show AAAAATATATAT	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0297 a0001c0001t0002g0297	1	9	0.1111	11	c.952 others(28): Show c.952-3623_952-3622insAAATATATATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52776229	A A	AAATATAT others(4): Show AAATATATATAT	intron_variant intron_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0190 a0001c0001t0005g0190	1	9	0.1111	11	c.952 others(28): Show c.952-3623_952-3622insATATATATATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52783805	T T	TACACCAC others(4): Show TACACCACACAC	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01069.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0152 a0001c0001t0011g0152	1	83	0.0120	11	c.109 others(30): Show c.1093-1068_1093-1067insCACACACACAC		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	4/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52793901	T T	TTCCTTCC others(4): Show TTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG01516.hp2 HG01516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0153 a0001c0001t0011g0153	1	334	0.0030	11	c.133 others(30): Show c.1335-2390_1335-2389insCCTTCCTTCCT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	6/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYX_chr7_143376345_143396111	143385660	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01167.hp2 NA18949.hp2 NA19005.hp2 others(4): Show HG01167.hp2 NA18949.hp2 NA19005.hp2 NA19066.hp1 NA19083.hp2 NA20905.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0046 a0001c0001t0001g0016 a0001c0001t0001g0046	7	106	0.0660	11	c.102 others(30): Show c.1023+2354_1023+2364dupTTTTTTTTTTT		ZYX	ENSG00000159840.16	transcript	ENST00000322764.10	protein_coding	5/9					INFO_REALIGN_3_PRIME	chr7	TogoVar
	ZYX_chr7_143376345_143396111	143390626	C C	CCCCTGGA others(4): Show CCCCTGGACGGT	frameshift_variant frameshift_variant	HIGH	NA19076.hp2 NA19076.hp2	a0011 a0011	a0011c0013 a0011c0013	a0011c0013t0001 a0011c0013t0001	a0011c0013t0001g0096 a0011c0013t0001g0096	1	452	0.0022	11	c.166 others(20): Show c.1665_1675dupCCTGGACGGTC	p.His others(5): Show p.His559fs	ZYX	ENSG00000159840.16	transcript	ENST00000322764.10	protein_coding	10/10	1756/2228	1676/1719	559/572		INFO_REALIGN_3_PRIME	chr7	TogoVar
	ZZEF1_chr17_3999445_4148030	4024186	G G	GTTTTTTT others(4): Show GTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01256.hp1 HG01258.hp1 others(4): Show HG01168.hp1 HG01256.hp1 HG01258.hp1 HG02109.hp2 HG03579.hp2 NA18906.hp1 NA19240.hp2	a0002 a0005 a0002 a0005	a0002c0002 a0005c0009 a0005c0025 others(1): Show a0002c0002 a0005c0009 a0005c0025 a0005c0063	a0002c0002t0014 a0005c0009t0003 a0005c0025t0003 others(1): Show a0002c0002t0014 a0005c0009t0003 a0005c0025t0003 a0005c0063t0003	a0002c0002t0014g0003 a0002c0002t0014g0004 a0005c0009t0003g0002 others(3): Show a0002c0002t0014g0003 a0002c0002t0014g0004 a0005c0009t0003g0002 a0005c0009t0003g0225 a0005c0025t0003g0228 a0005c0063t0003g0233	7	124	0.0565	11	c.709 others(28): Show c.7092+722_7092+732dupAAAAAAAAAAA		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	43/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4027286	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG02630.hp2 HG02895.hp1 others(4): Show HG00673.hp2 HG02630.hp2 HG02895.hp1 HG02922.hp1 HG03453.hp2 NA20129.hp1 NA20300.hp2	a0004 a0005 a0007 others(2): Show a0004 a0005 a0007 a0008 a0013	a0004c0005 a0005c0011 a0007c0006 others(2): Show a0004c0005 a0005c0011 a0007c0006 a0008c0007 a0013c0018	a0004c0005t0011 a0005c0011t0003 a0007c0006t0005 others(2): Show a0004c0005t0011 a0005c0011t0003 a0007c0006t0005 a0008c0007t0008 a0013c0018t0016	a0004c0005t0011g0248 a0004c0005t0011g0249 a0005c0011t0003g0251 others(4): Show a0004c0005t0011g0248 a0004c0005t0011g0249 a0005c0011t0003g0251 a0007c0006t0005g0195 a0007c0006t0005g0201 a0008c0007t0008g0120 a0013c0018t0016g0246	7	89	0.0787	11	c.689 others(30): Show c.6893-2179_6893-2169dupAAAAAAAAAAA		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	42/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4076137	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02922.hp2 HG03041.hp1 others(4): Show HG02257.hp1 HG02922.hp2 HG03041.hp1 HG03130.hp1 NA18522.hp2 NA18946.hp1 NA18955.hp1	a0002 a0005 a0006 others(1): Show a0002 a0005 a0006 a0010	a0002c0002 a0002c0004 a0005c0056 others(2): Show a0002c0002 a0002c0004 a0005c0056 a0006c0019 a0010c0045	a0002c0002t0002 a0002c0004t0002 a0005c0056t0003 others(2): Show a0002c0002t0002 a0002c0004t0002 a0005c0056t0003 a0006c0019t0003 a0010c0045t0003	a0002c0002t0002g0163 a0002c0004t0002g0151 a0005c0056t0003g0220 others(4): Show a0002c0002t0002g0163 a0002c0004t0002g0151 a0005c0056t0003g0220 a0006c0019t0003g0221 a0006c0019t0003g0222 a0006c0019t0003g0223 a0010c0045t0003g0041	7	122	0.0574	11	c.323 others(28): Show c.3234+489_3234+499dupAAAAAAAAAAA		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	21/54						chr17	TogoVar