Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
LRRFIP1_chr2_237622587_237786643	237681678	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG01069.hp1 HG01099.hp2 others(38): Show HG00438.hp2 HG01069.hp1 HG01099.hp2 HG01109.hp1 HG01358.hp2 HG01433.hp1 HG01978.hp2 HG02004.hp1 HG02056.hp1 HG02083.hp1 HG02145.hp2 HG02622.hp1 HG02735.hp2 HG02738.hp2 HG02818.hp2 HG02970.hp1 HG02970.hp2 HG03195.hp2 HG03486.hp1 HG03579.hp1 HG04199.hp2 HG04204.hp1 NA18944.hp2 NA18949.hp2 NA18957.hp2 NA18965.hp2 NA18975.hp1 NA18989.hp1 NA18994.hp1 NA18999.hp1 NA19003.hp1 NA19003.hp2 NA19056.hp1 NA19066.hp1 NA19066.hp2 NA19077.hp1 NA19081.hp1 NA19081.hp2 NA19083.hp2 NA20300.hp2 NA20752.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0002c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(16): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0001t0016 a0001c0001t0028 a0001c0001t0031 a0001c0001t0037 a0001c0001t0039 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0008 a0001c0002t0009 a0001c0002t0010 a0001c0004t0029 a0002c0003t0001 a0002c0003t0006 a0002c0003t0027 a0002c0003t0045	a0001c0001t0001g0003 a0001c0001t0001g0051 a0001c0001t0001g0063 others(38): Show a0001c0001t0001g0003 a0001c0001t0001g0051 a0001c0001t0001g0063 a0001c0001t0001g0086 a0001c0001t0001g0093 a0001c0001t0001g0097 a0001c0001t0002g0123 a0001c0001t0002g0141 a0001c0001t0002g0155 a0001c0001t0002g0182 a0001c0001t0002g0188 a0001c0001t0002g0195 a0001c0001t0002g0234 a0001c0001t0002g0236 a0001c0001t0002g0251 a0001c0001t0002g0258 a0001c0001t0007g0208 a0001c0001t0007g0222 a0001c0001t0016g0109 a0001c0001t0016g0113 a0001c0001t0028g0233 a0001c0001t0031g0159 a0001c0001t0037g0062 a0001c0001t0039g0103 a0001c0002t0002g0197 a0001c0002t0003g0133 a0001c0002t0003g0138 a0001c0002t0003g0231 a0001c0002t0005g0054 a0001c0002t0005g0110 a0001c0002t0005g0118 a0001c0002t0008g0173 a0001c0002t0008g0246 a0001c0002t0009g0237 a0001c0002t0010g0229 a0001c0004t0029g0226 a0002c0003t0001g0070 a0002c0003t0006g0192 a0002c0003t0006g0194 a0002c0003t0027g0223 a0002c0003t0045g0203	41	276	0.1486	15	c.97- others(32): Show c.97-26861_97-26847dupTTTTTTTTTTTTTTT		LRRFIP1	ENSG00000124831.20	transcript	ENST00000308482.14	protein_coding	1/23					INFO_REALIGN_3_PRIME	chr2	TogoVar
LRRFIP2_chr3_37047626_37179582	37165795	G G	GAGAAAGA others(8): Show GAGAAAGAAAGAAAAA	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0017 a0001c0002t0004g0017	1	268	0.0037	15	c.-56 others(32): Show c.-56+8743_-56+8744insTTTTTCTTTCTTTCT		LRRFIP2	ENSG00000093167.18	transcript	ENST00000336686.9	protein_coding	1/27						chr3	TogoVar
LRRFIP2_chr3_37047626_37179582	37165846	A A	AAAGAAAG others(8): Show AAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	NA18974.hp1 NA18974.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0114 a0001c0001t0001g0114	1	268	0.0037	15	c.-56 others(32): Show c.-56+8692_-56+8693insCTTTCTTTCTTTCTT		LRRFIP2	ENSG00000093167.18	transcript	ENST00000336686.9	protein_coding	1/27						chr3	TogoVar
LRRIQ1_chr12_85031351_85250105	85086935	C C	CATTATTA others(8): Show CATTATTATTATTATT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02572.hp1 HG02258.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0088 a0001c0001t0001g0097 a0001c0001t0001g0088 a0001c0001t0001g0097	2	228	0.0088	15	c.288 others(36): Show c.2888-11408_2888-11394dupTATTATTATTATTAT		LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	11/26					INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85102949	A A	ATATATAT others(8): Show ATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0125 a0001c0001t0002g0125	1	228	0.0044	15	c.321 others(34): Show c.3210-1055_3210-1054insTATATATATATATAT		LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	13/26						chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85102951	A A	ATATATAT others(8): Show ATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0134 a0001c0001t0002g0134	1	228	0.0044	15	c.321 others(34): Show c.3210-1053_3210-1052insTATATATATATATAT		LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	13/26						chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85102959	A A	AAATATAT others(8): Show AAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0118 a0001c0005t0001g0118	1	228	0.0044	15	c.321 others(34): Show c.3210-1044_3210-1043insATATATATATATATA		LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	13/26					INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85102959	A A	ATATATAT others(8): Show ATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0015 a0015	a0015c0017 a0015c0017	a0015c0017t0001 a0015c0017t0001	a0015c0017t0001g0003 a0015c0017t0001g0003	1	228	0.0044	15	c.321 others(34): Show c.3210-1045_3210-1044insTATATATATATATAT		LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	13/26						chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85174701	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02145.hp1 HG02257.hp1 others(9): Show HG01192.hp1 HG02145.hp1 HG02257.hp1 HG02486.hp1 HG02572.hp2 HG02965.hp2 HG02976.hp2 HG03139.hp1 NA18906.hp2 NA19043.hp1 NA19240.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0009 a0001c0020 a0001c0001 a0001c0009 a0001c0020	a0001c0001t0001 a0001c0009t0001 a0001c0009t0004 others(1): Show a0001c0001t0001 a0001c0009t0001 a0001c0009t0004 a0001c0020t0001	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0073 others(9): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0073 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0116 a0001c0001t0001g0158 a0001c0001t0001g0225 a0001c0001t0001g0226 a0001c0009t0001g0219 a0001c0009t0004g0218 a0001c0020t0001g0112	12	228	0.0526	15	c.482 others(36): Show c.4822+13995_4822+14009dupAAAAAAAAAAAAAAA		LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	24/26					INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ3_chr1_74021015_74203176	74022362	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00735.hp1 NA19057.hp2 HG00735.hp1 NA19057.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0244 a0001c0001t0001g0245	2	274	0.0073	15	c.44 others(26): Show c.4450_*4451insTTTTTTTTTTTTTTT		LRRIQ3	ENSG00000162620.16	transcript	ENST00000354431.9	protein_coding					3652		chr1	TogoVar
LRRIQ3_chr1_74021015_74203176	74087381	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03486.hp1 NA19030.hp1 HG03486.hp1 NA19030.hp1	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0005 a0006c0006t0006 a0006c0006t0005 a0006c0006t0006	a0006c0006t0005g0271 a0006c0006t0006g0266 a0006c0006t0005g0271 a0006c0006t0006g0266	2	274	0.0073	15	c.868 others(34): Show c.868-12606_868-12592dupAAAAAAAAAAAAAAA		LRRIQ3	ENSG00000162620.16	transcript	ENST00000354431.9	protein_coding	5/7						chr1	TogoVar
LRRIQ3_chr1_74021015_74203176	74154240	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0058 a0001c0001t0002g0058	1	274	0.0037	15	c.707 others(32): Show c.707+1478_707+1492dupTTTTTTTTTTTTTTT		LRRIQ3	ENSG00000162620.16	transcript	ENST00000354431.9	protein_coding	4/7						chr1	TogoVar
LRRIQ4_chr3_169807870_169842773	169810444	A A	ATGCACTA others(8): Show ATGCACTAGTATTTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0027 a0003c0004t0001g0027	1	386	0.0026	15	c.-26 others(26): Show c.-2634_-2633insTGCACTAGTATTTCC		LRRIQ4	ENSG00000188306.7	transcript	ENST00000340806.7	protein_coding					2425		chr3	TogoVar
LRRIQ4_chr3_169807870_169842773	169830377	G G	GAAAAAAA others(8): Show GAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01884.hp1 HG02559.hp1 others(5): Show HG01358.hp2 HG01884.hp1 HG02559.hp1 HG02698.hp2 HG02886.hp2 HG03491.hp1 NA18906.hp1 NA18964.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0255 a0001c0001t0001g0279 others(4): Show a0001c0001t0001g0015 a0001c0001t0001g0255 a0001c0001t0001g0279 a0001c0001t0001g0291 a0001c0001t0001g0304 a0001c0001t0001g0329 a0001c0001t0001g0330	8	386	0.0207	15	c.119 others(30): Show c.1195-97_1195-83dupAAAAAAAAAAAAAAA		LRRIQ4	ENSG00000188306.7	transcript	ENST00000340806.7	protein_coding	3/5					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRIQ4_chr3_169807870_169842773	169835364	C C	CTTGTGTG others(8): Show CTTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18962.hp2 NA18978.hp2 NA18962.hp2 NA18978.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0217 a0001c0001t0001g0033 a0001c0001t0001g0217	2	386	0.0052	15	c.153 others(34): Show c.1531-2114_1531-2113insTGTGTGTGTGTGTGT		LRRIQ4	ENSG00000188306.7	transcript	ENST00000340806.7	protein_coding	5/5					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRK1_chr15_100914357_101083257	100951958	A A	AAATAATA others(8): Show AAATAATAATAATAAT	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0212 a0001c0007t0212	a0001c0007t0212g0075 a0001c0007t0212g0075	1	338	0.0030	15	c.98- others(32): Show c.98-21844_98-21843insTAATAATAATAATAA		LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	2/33					INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRK1_chr15_100914357_101083257	101051741	C C	CACTCATG others(8): Show CACTCATGGAGCAGTA	stop_gained others(1): Show stop_gained disruptive_inframe_insertion	HIGH	NA18977.hp1 NA18977.hp1	a0026 a0026	a0026c0116 a0026c0116	a0026c0116t0069 a0026c0116t0069	a0026c0116t0069g0262 a0026c0116t0069g0262	1	338	0.0030	15	c.347 others(24): Show c.3471_3485dupACTCATGGAGCAGTA	p.Gln others(30): Show p.Gln1161_Tyr1162insTerLeuMetGluGln	LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	24/34	3703/15674	3486/6048	1162/2015		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRK2_chr12_40219997_40374285	40220153	C C	CCATATAT others(8): Show CCATATATATAATGTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01192.hp1 HG01884.hp2 HG01934.hp1 others(6): Show HG01192.hp1 HG01884.hp2 HG01934.hp1 HG02155.hp2 HG03017.hp2 HG03471.hp1 HG06807.hp1 NA18747.hp2 NA19006.hp2	a0001 a0003 a0004 others(3): Show a0001 a0003 a0004 a0009 a0014 a0028	a0001c0005 a0003c0011 a0004c0006 others(4): Show a0001c0005 a0003c0011 a0004c0006 a0004c0054 a0009c0013 a0014c0026 a0028c0060	a0001c0005t0005 a0003c0011t0004 a0004c0006t0001 others(4): Show a0001c0005t0005 a0003c0011t0004 a0004c0006t0001 a0004c0054t0001 a0009c0013t0001 a0014c0026t0005 a0028c0060t0001	a0001c0005t0005g0207 a0003c0011t0004g0206 a0004c0006t0001g0209 others(6): Show a0001c0005t0005g0207 a0003c0011t0004g0206 a0004c0006t0001g0209 a0004c0054t0001g0210 a0009c0013t0001g0133 a0009c0013t0001g0135 a0014c0026t0005g0208 a0014c0026t0005g0211 a0028c0060t0001g0134	9	382	0.0236	15	c.-49 others(26): Show c.-4979_-4978insCATATATATAATGTA		LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding					4843		chr12	TogoVar
LRRK2_chr12_40219997_40374285	40242804	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02622.hp2 NA18941.hp2 NA19077.hp1 HG02622.hp2 NA18941.hp2 NA19077.hp1	a0001 a0003 a0025 a0001 a0003 a0025	a0001c0003 a0003c0014 a0025c0056 a0001c0003 a0003c0014 a0025c0056	a0001c0003t0003 a0003c0014t0010 a0025c0056t0004 a0001c0003t0003 a0003c0014t0010 a0025c0056t0004	a0001c0003t0003g0174 a0003c0014t0010g0173 a0025c0056t0004g0140 a0001c0003t0003g0174 a0003c0014t0010g0173 a0025c0056t0004g0140	3	382	0.0079	15	c.707 others(30): Show c.707-733_707-732insAAAAAAAAAAAAAAA		LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	6/50					INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK2_chr12_40219997_40374285	40280621	T T	TTAAAATA others(8): Show TTAAAATAAAATAAAA	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01934.hp1 HG02257.hp1 others(7): Show HG01175.hp2 HG01934.hp1 HG02257.hp1 HG02280.hp2 HG02630.hp2 HG03195.hp1 HG03516.hp1 HG06807.hp2 NA18960.hp2 NA18972.hp2	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0029	a0001c0002 a0001c0005 a0003c0011 others(4): Show a0001c0002 a0001c0005 a0003c0011 a0003c0025 a0004c0006 a0004c0055 a0029c0062	a0001c0002t0002 a0001c0002t0011 a0001c0005t0002 others(5): Show a0001c0002t0002 a0001c0002t0011 a0001c0005t0002 a0003c0011t0004 a0003c0025t0001 a0004c0006t0001 a0004c0055t0001 a0029c0062t0006	a0001c0002t0002g0070 a0001c0002t0002g0091 a0001c0002t0011g0304 others(7): Show a0001c0002t0002g0070 a0001c0002t0002g0091 a0001c0002t0011g0304 a0001c0002t0011g0305 a0001c0005t0002g0104 a0003c0011t0004g0206 a0003c0025t0001g0141 a0004c0006t0001g0355 a0004c0055t0001g0341 a0029c0062t0006g0317	10	382	0.0262	15	c.224 others(34): Show c.2241+2389_2241+2403dupAATAAAATAAAATAA		LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	18/50					INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK2_chr12_40219997_40374285	40282009	G G	GCTTCCCT others(8): Show GCTTCCCTTCCCTTCC	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02976.hp2 HG02257.hp1 HG02976.hp2	a0001 a0003 a0001 a0003	a0001c0002 a0003c0016 a0001c0002 a0003c0016	a0001c0002t0011 a0003c0016t0009 a0001c0002t0011 a0003c0016t0009	a0001c0002t0011g0304 a0003c0016t0009g0131 a0001c0002t0011g0304 a0003c0016t0009g0131	2	382	0.0052	15	c.224 others(34): Show c.2242-1801_2242-1787dupCCTTCCCTTCCCTTC		LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	18/50					INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK2_chr12_40219997_40374285	40352469	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00323.hp1 others(113): Show HG00099.hp2 HG00140.hp1 HG00323.hp1 HG00408.hp2 HG00438.hp2 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp1 HG01109.hp2 HG01123.hp1 HG01168.hp1 HG01192.hp2 HG01243.hp2 HG01255.hp2 HG01256.hp1 HG01358.hp2 HG01361.hp1 HG01516.hp1 HG01928.hp2 HG01978.hp2 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02040.hp2 HG02071.hp1 HG02135.hp1 HG02165.hp1 HG02280.hp1 HG02293.hp2 HG02300.hp1 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02559.hp1 HG02602.hp1 HG02622.hp2 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02886.hp2 HG02922.hp2 HG03017.hp1 HG03041.hp1 HG03098.hp2 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03942.hp2 HG04199.hp2 HG04204.hp2 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18747.hp2 NA18906.hp2 NA18943.hp1 NA18951.hp2 NA18955.hp1 NA18955.hp2 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18959.hp2 NA18962.hp1 NA18968.hp1 NA18968.hp2 NA18970.hp1 NA18971.hp2 NA18972.hp2 NA18974.hp1 NA18978.hp2 NA18983.hp1 NA18983.hp2 NA18986.hp2 NA18988.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp1 NA19000.hp1 NA19002.hp2 NA19003.hp1 NA19004.hp2 NA19005.hp1 NA19011.hp1 NA19054.hp1 NA19056.hp2 NA19057.hp1 NA19058.hp1 NA19060.hp2 NA19062.hp2 NA19066.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19072.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19082.hp2 NA19085.hp1 NA19085.hp2 NA19088.hp2 NA19089.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp2 NA21309.hp1	a0002 a0003 a0004 others(10): Show a0002 a0003 a0004 a0007 a0009 a0010 a0013 a0019 a0025 a0027 a0028 a0030 a0031	a0002c0001 a0002c0009 a0002c0039 others(19): Show a0002c0001 a0002c0009 a0002c0039 a0002c0047 a0003c0004 a0003c0011 a0003c0021 a0003c0043 a0004c0006 a0004c0034 a0004c0045 a0004c0054 a0007c0012 a0009c0013 a0010c0019 a0013c0023 a0019c0024 a0025c0056 a0027c0053 a0028c0060 a0030c0038 a0031c0044	a0002c0001t0001 a0002c0001t0004 a0002c0001t0018 others(23): Show a0002c0001t0001 a0002c0001t0004 a0002c0001t0018 a0002c0009t0001 a0002c0039t0001 a0002c0047t0001 a0003c0004t0001 a0003c0011t0004 a0003c0021t0001 a0003c0043t0001 a0004c0006t0001 a0004c0006t0008 a0004c0006t0019 a0004c0034t0001 a0004c0045t0001 a0004c0054t0001 a0007c0012t0005 a0009c0013t0001 a0010c0019t0001 a0013c0023t0001 a0019c0024t0001 a0025c0056t0004 a0027c0053t0020 a0028c0060t0001 a0030c0038t0001 a0031c0044t0001	a0002c0001t0001g0004 a0002c0001t0001g0005 a0002c0001t0001g0006 others(112): Show a0002c0001t0001g0004 a0002c0001t0001g0005 a0002c0001t0001g0006 a0002c0001t0001g0007 a0002c0001t0001g0008 a0002c0001t0001g0009 a0002c0001t0001g0010 a0002c0001t0001g0011 a0002c0001t0001g0012 a0002c0001t0001g0017 a0002c0001t0001g0019 a0002c0001t0001g0020 a0002c0001t0001g0021 a0002c0001t0001g0022 a0002c0001t0001g0024 a0002c0001t0001g0028 a0002c0001t0001g0033 a0002c0001t0001g0038 a0002c0001t0001g0042 a0002c0001t0001g0044 a0002c0001t0001g0045 a0002c0001t0001g0046 a0002c0001t0001g0047 a0002c0001t0001g0048 a0002c0001t0001g0049 a0002c0001t0001g0050 a0002c0001t0001g0051 a0002c0001t0001g0054 a0002c0001t0001g0056 a0002c0001t0001g0059 a0002c0001t0001g0060 a0002c0001t0001g0068 a0002c0001t0001g0069 a0002c0001t0001g0073 a0002c0001t0001g0074 a0002c0001t0001g0075 a0002c0001t0001g0078 a0002c0001t0001g0079 a0002c0001t0001g0080 a0002c0001t0001g0082 a0002c0001t0001g0084 a0002c0001t0001g0085 a0002c0001t0001g0087 a0002c0001t0001g0088 a0002c0001t0001g0089 a0002c0001t0001g0094 a0002c0001t0001g0095 a0002c0001t0001g0098 a0002c0001t0001g0099 a0002c0001t0001g0100 a0002c0001t0001g0113 a0002c0001t0001g0117 a0002c0001t0001g0124 a0002c0001t0001g0125 a0002c0001t0001g0126 a0002c0001t0001g0127 a0002c0001t0001g0150 a0002c0001t0001g0161 a0002c0001t0001g0163 a0002c0001t0001g0229 a0002c0001t0001g0245 a0002c0001t0001g0283 a0002c0001t0001g0322 a0002c0001t0001g0363 a0002c0001t0004g0146 a0002c0001t0018g0018 a0002c0009t0001g0015 a0002c0009t0001g0037 a0002c0009t0001g0041 a0002c0009t0001g0055 a0002c0009t0001g0130 a0002c0039t0001g0097 a0002c0047t0001g0081 a0003c0004t0001g0003 a0003c0011t0004g0333 a0003c0021t0001g0237 a0003c0021t0001g0238 a0003c0021t0001g0246 a0003c0043t0001g0086 a0004c0006t0001g0329 a0004c0006t0001g0330 a0004c0006t0001g0332 a0004c0006t0001g0337 a0004c0006t0001g0338 a0004c0006t0001g0339 a0004c0006t0001g0340 a0004c0006t0001g0342 a0004c0006t0001g0346 a0004c0006t0001g0347 a0004c0006t0001g0348 a0004c0006t0001g0349 a0004c0006t0001g0355 a0004c0006t0001g0358 a0004c0006t0008g0002 a0004c0006t0008g0351 a0004c0006t0008g0357 a0004c0006t0019g0360 a0004c0034t0001g0324 a0004c0034t0001g0325 a0004c0045t0001g0116 a0004c0054t0001g0210 a0007c0012t0005g0345 a0007c0012t0005g0350 a0007c0012t0005g0359 a0009c0013t0001g0166 a0009c0013t0001g0178 a0010c0019t0001g0026 a0013c0023t0001g0066 a0013c0023t0001g0077 a0019c0024t0001g0123 a0025c0056t0004g0140 a0027c0053t0020g0013 a0028c0060t0001g0134 a0030c0038t0001g0122 a0031c0044t0001g0109	116	382	0.3037	15	c.657 others(32): Show c.6576+746_6576+747insTTTTTTTTTTTTTTT		LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	44/50					INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRN2_chr1_204612170_204690738	204631256	C C	CAATCTAA others(8): Show CAATCTAATATATATA	intron_variant intron_variant	MODIFIER	HG03492.hp1 NA19012.hp1 HG03492.hp1 NA19012.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0002 a0001c0002t0001 a0001c0002t0002	a0001c0002t0001g0305 a0001c0002t0002g0270 a0001c0002t0001g0305 a0001c0002t0002g0270	2	328	0.0061	15	c.-22 others(36): Show c.-226-11039_-226-11038insTATATATATTAGATT		LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1						chr1	TogoVar
LRRTM1_chr2_80296878_80309752	80306375	C C	CTTTCTTT others(8): Show CTTTCTTTTCTTTTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp1 NA18962.hp2 NA18989.hp1 HG03225.hp1 NA18962.hp2 NA18989.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0004 a0002c0002t0001 a0001c0001t0004 a0002c0002t0001	a0001c0001t0004g0006 a0002c0002t0001g0002 a0001c0001t0004g0006 a0002c0002t0001g0002	3	418	0.0072	15	c.-22 others(26): Show c.-2298_-2284dupAGAAAAGAAAAGAAA		LRRTM1	ENSG00000162951.11	transcript	ENST00000295057.4	protein_coding					1624		chr2	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	AAAAAAAA others(8): Show AAAAAAAAAAATATAT	intron_variant intron_variant	MODIFIER	HG02071.hp1 HG02071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0074 a0001c0001t0002g0074	1	294	0.0034	15	c.153 others(36): Show c.1536+50101_1536+50102insAAAAAAAAATATATA		LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66996649	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG01884.hp2 HG02132.hp2 others(1): Show HG01361.hp1 HG01884.hp2 HG02132.hp2 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0138 a0001c0001t0001g0208 a0001c0001t0002g0107 others(1): Show a0001c0001t0001g0138 a0001c0001t0001g0208 a0001c0001t0002g0107 a0001c0001t0002g0122	4	294	0.0136	15	c.153 others(36): Show c.1536+68205_1536+68219dupAAAAAAAAAAAAAAA		LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	67005682	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00423.hp1 others(53): Show HG00280.hp1 HG00323.hp1 HG00423.hp1 HG00423.hp2 HG00621.hp2 HG00735.hp1 HG00741.hp1 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01099.hp1 HG01243.hp2 HG01255.hp2 HG01261.hp1 HG01496.hp2 HG01891.hp2 HG02027.hp2 HG02109.hp2 HG02280.hp1 HG02280.hp2 HG02615.hp1 HG02717.hp1 HG02723.hp1 HG02738.hp2 HG02818.hp2 HG02895.hp2 HG02896.hp2 HG02922.hp1 HG03017.hp2 HG03041.hp2 HG03471.hp2 HG03491.hp1 HG03704.hp1 HG03710.hp2 HG04228.hp1 HG04228.hp2 NA18612.hp2 NA18747.hp2 NA18941.hp2 NA18945.hp2 NA18962.hp2 NA18970.hp1 NA18978.hp1 NA18980.hp2 NA18983.hp1 NA18983.hp2 NA18992.hp2 NA18995.hp2 NA18999.hp2 NA19006.hp1 NA19057.hp1 NA19060.hp1 NA19070.hp1 NA19074.hp2 NA19076.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0001c0005 others(1): Show a0001c0001 a0001c0004 a0001c0005 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0022 a0001c0004t0002 a0001c0005t0006 a0002c0002t0008	a0001c0001t0001g0015 a0001c0001t0001g0025 a0001c0001t0001g0028 others(53): Show a0001c0001t0001g0015 a0001c0001t0001g0025 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0120 a0001c0001t0001g0178 a0001c0001t0001g0180 a0001c0001t0001g0190 a0001c0001t0001g0206 a0001c0001t0001g0231 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0240 a0001c0001t0001g0281 a0001c0001t0001g0283 a0001c0001t0002g0009 a0001c0001t0002g0013 a0001c0001t0002g0034 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0049 a0001c0001t0002g0055 a0001c0001t0002g0057 a0001c0001t0002g0064 a0001c0001t0002g0070 a0001c0001t0002g0076 a0001c0001t0002g0082 a0001c0001t0002g0085 a0001c0001t0002g0087 a0001c0001t0002g0095 a0001c0001t0002g0105 a0001c0001t0002g0107 a0001c0001t0002g0118 a0001c0001t0002g0140 a0001c0001t0002g0143 a0001c0001t0002g0145 a0001c0001t0002g0155 a0001c0001t0002g0167 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0188 a0001c0001t0002g0196 a0001c0001t0002g0221 a0001c0001t0002g0228 a0001c0001t0003g0249 a0001c0001t0003g0254 a0001c0001t0006g0258 a0001c0001t0022g0269 a0001c0004t0002g0123 a0001c0005t0006g0260 a0002c0002t0008g0071 a0002c0002t0008g0110	56	294	0.1905	15	c.153 others(36): Show c.1536+77237_1536+77251dupTTTTTTTTTTTTTTT		LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	67005687	T T	TTTTTTTT others(8): Show TTTTTTTTTTTTTTTG	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0124 a0001c0001t0001g0124	1	294	0.0034	15	c.153 others(36): Show c.1536+77249_1536+77250insGTTTTTTTTTTTTTT		LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	67030099	C C	CAAAATAA others(8): Show CAAAATAATCCTGTTT	intron_variant intron_variant	MODIFIER	NA18959.hp2 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0186 a0001c0001t0001g0186	1	294	0.0034	15	c.153 others(36): Show c.1537-67479_1537-67478insCTGTTTAAAATAATC		LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM4_chr2_76742685_77527376	76913543	A A	ATTTTTTT others(8): Show ATTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00621.hp1 HG00735.hp1 others(17): Show HG00438.hp1 HG00621.hp1 HG00735.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01496.hp1 HG01516.hp1 HG01884.hp2 HG02135.hp1 HG02145.hp1 HG02738.hp1 HG03139.hp1 HG03490.hp2 HG03704.hp2 NA18522.hp1 NA18961.hp1 NA18965.hp2 NA18966.hp1 NA18983.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0028 others(17): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0041 a0001c0001t0001g0057 a0001c0001t0001g0065 a0001c0001t0002g0007 a0001c0001t0002g0012 a0001c0001t0002g0029 a0001c0001t0002g0070 a0001c0001t0002g0077 a0001c0001t0002g0103 a0001c0001t0002g0127 a0001c0001t0003g0043 a0001c0001t0003g0060 a0001c0001t0003g0061 a0001c0001t0003g0093 a0001c0001t0004g0058 a0001c0001t0004g0073	20	128	0.1563	15	c.155 others(38): Show c.1552-164628_1552-164627insAAAAAAAAAAAAAAA		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76936954	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0104 a0001c0001t0001g0104	1	128	0.0078	15	c.155 others(38): Show c.1552-188053_1552-188039dupTTTTTTTTTTTTTTT		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76942705	T T	TGTGTGTG others(8): Show TGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0035 a0001c0001t0002g0035	1	128	0.0078	15	c.155 others(38): Show c.1552-193790_1552-193789insCACACACACACACAC		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77075914	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02135.hp1 HG02145.hp2 others(7): Show HG01261.hp1 HG02135.hp1 HG02145.hp2 HG02738.hp1 HG03098.hp1 HG03209.hp1 HG03579.hp1 HG03704.hp2 NA18951.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0030 others(7): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0030 a0001c0001t0001g0099 a0001c0001t0001g0125 a0001c0001t0002g0077 a0001c0001t0003g0112 a0001c0001t0004g0013 a0001c0001t0004g0073 a0001c0001t0006g0082	10	128	0.0781	15	c.155 others(38): Show c.1552-327013_1552-326999dupTTTTTTTTTTTTTTT		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77083783	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0093 a0001c0001t0003g0093	1	128	0.0078	15	c.155 others(38): Show c.1552-334882_1552-334868dupAAAAAAAAAAAAAAA		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77217440	A A	ATATATAT others(8): Show ATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00558.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0040 a0001c0001t0002g0040	1	128	0.0078	15	c.155 others(38): Show c.1551+300877_1551+300878insATATATATATATATA		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77306897	A A	ATTTTTTT others(8): Show ATTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02886.hp1 NA20129.hp1 HG02886.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0001 a0001c0001t0008	a0001c0001t0001g0113 a0001c0001t0008g0126 a0001c0001t0001g0113 a0001c0001t0008g0126	2	128	0.0156	15	c.155 others(38): Show c.1551+211406_1551+211420dupAAAAAAAAAAAAAAA		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77360476	T T	TGATACGA others(8): Show TGATACGATACGATAC	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG02809.hp1 NA19011.hp1 HG00438.hp1 HG02809.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0009 a0001c0001t0001 a0001c0001t0003 a0001c0001t0009	a0001c0001t0001g0102 a0001c0001t0003g0043 a0001c0001t0009g0055 a0001c0001t0001g0102 a0001c0001t0003g0043 a0001c0001t0009g0055	3	128	0.0234	15	c.155 others(38): Show c.1551+157827_1551+157841dupGTATCGTATCGTATC		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77407718	T T	TATATTAT others(8): Show TATATTATATATTATA	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01884.hp2 HG02258.hp2 others(7): Show HG01243.hp2 HG01884.hp2 HG02258.hp2 HG02280.hp2 HG02622.hp2 HG02723.hp1 HG03098.hp1 HG03486.hp1 HG03579.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006	a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0002g0015 others(7): Show a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0002g0015 a0001c0001t0002g0051 a0001c0001t0002g0059 a0001c0001t0002g0121 a0001c0001t0002g0127 a0001c0001t0003g0047 a0001c0001t0003g0090 a0001c0001t0006g0034	10	128	0.0781	15	c.155 others(38): Show c.1551+110599_1551+110600insTATAATATATAATAT		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRSAM1_chr9_127446510_127508499	127466504	A A	ATATATAT others(8): Show ATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp2 HG00280.hp1 HG00280.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0170 a0002c0002t0001g0177 a0002c0002t0001g0170 a0002c0002t0001g0177	2	340	0.0059	15	c.529 others(32): Show c.529-1235_529-1234insATATATATATATATT		LRSAM1	ENSG00000148356.15	transcript	ENST00000300417.11	protein_coding	9/25					INFO_REALIGN_3_PRIME	chr9	TogoVar
LRSAM1_chr9_127446510_127508499	127466504	A A	ATATATAT others(8): Show ATATATATATATATTT	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG01258.hp2 NA20300.hp1 HG01169.hp2 HG01258.hp2 NA20300.hp1	a0002 a0002	a0002c0002 a0002c0005 a0002c0002 a0002c0005	a0002c0002t0001 a0002c0005t0002 a0002c0002t0001 a0002c0005t0002	a0002c0002t0001g0049 a0002c0002t0001g0056 a0002c0005t0002g0028 a0002c0002t0001g0049 a0002c0002t0001g0056 a0002c0005t0002g0028	3	340	0.0088	15	c.529 others(32): Show c.529-1235_529-1234insATATATATATATTTT		LRSAM1	ENSG00000148356.15	transcript	ENST00000300417.11	protein_coding	9/25					INFO_REALIGN_3_PRIME	chr9	TogoVar
LRSAM1_chr9_127446510_127508499	127466504	A A	ATATTTTT others(8): Show ATATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0058 a0002c0002t0001g0058	1	340	0.0029	15	c.529 others(32): Show c.529-1235_529-1234insATTTTTTTTTTTTTT		LRSAM1	ENSG00000148356.15	transcript	ENST00000300417.11	protein_coding	9/25					INFO_REALIGN_3_PRIME	chr9	TogoVar
LRSAM1_chr9_127446510_127508499	127500358	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01175.hp2 HG00741.hp2 HG01175.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0096 a0001c0003t0001g0152 a0001c0003t0001g0096 a0001c0003t0001g0152	2	340	0.0059	15	c.191 others(32): Show c.1913-649_1913-635dupAAAAAAAAAAAAAAA		LRSAM1	ENSG00000148356.15	transcript	ENST00000300417.11	protein_coding	24/25					INFO_REALIGN_3_PRIME	chr9	TogoVar
LRTM2_chr12_1815565_1841753	1820246	C C	CGGCGGGG others(8): Show CGGCGGGGCGGGGGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02615.hp1 HG02818.hp2 HG02615.hp1 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0337 a0001c0001t0006g0340 a0001c0001t0003g0337 a0001c0001t0006g0340	2	462	0.0043	15	c.-82 others(24): Show c.-827_-826insGGCGGGGCGGGGGGG		LRTM2	ENSG00000166159.11	transcript	ENST00000299194.6	protein_coding					318		chr12	TogoVar
LSAMP_chr3_115797374_116450487	116011013	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG03098.hp1 HG03130.hp2 HG02818.hp1 HG03098.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0029 a0001c0001t0063 a0001c0001t0026 a0001c0001t0029 a0001c0001t0063	a0001c0001t0026g0089 a0001c0001t0029g0072 a0001c0001t0063g0096 a0001c0001t0026g0089 a0001c0001t0029g0072 a0001c0001t0063g0096	3	104	0.0289	15	c.514 others(32): Show c.514+8501_514+8502insAAAAAAAAAAAAAAA		LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	3/6						chr3	TogoVar
LSAMP_chr3_115797374_116450487	116057967	A A	ACACACAC others(8): Show ACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG04184.hp1 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0036 a0001c0001t0036	a0001c0001t0036g0080 a0001c0001t0036g0080	1	104	0.0096	15	c.388 others(34): Show c.388+28356_388+28357insGTGTGTGTGTGTGTG		LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	2/6						chr3	TogoVar
LSAMP_chr3_115797374_116450487	116222720	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02922.hp2 HG02809.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0067 a0001c0001t0003 a0001c0001t0067	a0001c0001t0003g0007 a0001c0001t0067g0064 a0001c0001t0003g0007 a0001c0001t0067g0064	2	104	0.0192	15	c.156 others(36): Show c.156-136179_156-136165dupAAAAAAAAAAAAAAA		LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6						chr3	TogoVar
LSAMP_chr3_115797374_116450487	116444392	A A	ACACACAC others(8): Show ACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02145.hp2 NA21309.hp1 HG02145.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0061 a0001c0001t0001 a0001c0001t0061	a0001c0001t0001g0016 a0001c0001t0061g0075 a0001c0001t0001g0016 a0001c0001t0061g0075	2	104	0.0192	15	c.155 others(30): Show c.155+484_155+485insGTGTGTGTGTGTGTG		LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6						chr3	TogoVar
LSG1_chr3_194635791_194677191	194667923	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01175.hp1 NA19076.hp1 HG00639.hp1 HG01175.hp1 NA19076.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0008 a0001c0003t0002 a0001c0003t0008	a0001c0003t0002g0162 a0001c0003t0002g0311 a0001c0003t0008g0196 a0001c0003t0002g0162 a0001c0003t0002g0311 a0001c0003t0008g0196	3	408	0.0074	15	c.227 others(32): Show c.227-1366_227-1352dupTTTTTTTTTTTTTTT		LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	2/13						chr3	TogoVar
LSG1_chr3_194635791_194677191	194667942	A A	AAAAAAAA others(8): Show AAAAAAAAAAAAAAAT	intron_variant intron_variant	MODIFIER	NA19084.hp1 NA19084.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0153 a0001c0003t0002g0153	1	408	0.0025	15	c.227 others(32): Show c.227-1371_227-1370insATTTTTTTTTTTTTT		LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	2/13						chr3	TogoVar
LSM10_chr1_36388436_36402908	36398656	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0016	1	432	0.0023	15	c.-91 others(24): Show c.-915_-914insTTTTTTTTTTTTTTT		LSM10	ENSG00000181817.6	transcript	ENST00000315732.3	protein_coding					749		chr1	TogoVar

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