Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

Chr

Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Samplehapid

No_hapid

No_samplehapid

Start

End

Minac

Maxac

Minlen

Maxlen

Sort By

Order by

regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ZSCAN5A_chr19_56216303_56319839	56216953	T T	TTTCTTTT others(10): Show TTTCTTTTCTCCCCCCCC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01978.hp1 HG01978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0354 a0001c0001t0001g0354	1	324	0.0031	17	c.46 others(28): Show c.4621_*4622insGGGGGGGGAGAAAAGAA	ZSCAN5A	ENSG00000131848.10	transcript	ENST00000683990.1	protein_coding		4349		chr19	TogoVar
ZSCAN5A_chr19_56216303_56319839	56292451	G G	GTTTTTAC others(10): Show GTTTTTACTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01069.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0068 a0001c0001t0001g0068	1	305	0.0033	17	c.-12 others(38): Show c.-128+20815_-128+20831dupAAAAAAAAAAGTAAAAA	ZSCAN5A	ENSG00000131848.10	transcript	ENST00000683990.1	protein_coding	2/5			chr19	TogoVar
ZSWIM2_chr2_186822475_186854170	186837612	G G	GTATATAT others(10): Show GTATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0006 a0002c0006t0006	a0002c0006t0006g0041 a0002c0006t0006g0041	1	176	0.0057	17	c.495 others(30): Show c.495-75_495-59dupATATATATATATATATA	ZSWIM2	ENSG00000163012.4	transcript	ENST00000295131.3	protein_coding	4/8			chr2	TogoVar
ZSWIM4_chr19_13790443_13837254	13794438	T T	TAAAAAAA others(10): Show TAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp2 HG00609.hp2 HG00639.hp2 others(9): Show HG00423.hp2 HG00609.hp2 HG00639.hp2 HG01496.hp2 HG03239.hp1 NA18966.hp1 NA19000.hp1 NA19004.hp1 NA19011.hp1 NA19012.hp2 NA19054.hp1 NA19081.hp1	a0001 a0001	a0001c0001 a0001c0022 a0001c0001 a0001c0022	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0022t0003	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0135 others(9): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0135 a0001c0001t0001g0166 a0001c0001t0001g0230 a0001c0001t0001g0237 a0001c0001t0001g0241 a0001c0001t0003g0238 a0001c0001t0004g0032 a0001c0001t0007g0175 a0001c0001t0007g0180 a0001c0022t0003g0157	12	19	0.6316	17	c.-12 others(28): Show c.-1211_-1210insAAAAAAAAAAAAAAAAA	ZSWIM4	ENSG00000132003.10	transcript	ENST00000590508.6	protein_coding		1004		chr19	TogoVar
ZSWIM5_chr1_45011399_45211605	45160989	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG02071.hp1 HG02083.hp1 others(7): Show HG01069.hp2 HG02071.hp1 HG02083.hp1 HG02109.hp2 HG02145.hp2 NA18944.hp1 NA18950.hp1 NA18956.hp2 NA19000.hp1 NA19082.hp2	a0001 a0001	a0001c0002 a0001c0008 a0001c0002 a0001c0008	a0001c0002t0001 a0001c0002t0002 a0001c0008t0010 a0001c0002t0001 a0001c0002t0002 a0001c0008t0010	a0001c0002t0001g0044 a0001c0002t0002g0042 a0001c0002t0002g0043 others(7): Show a0001c0002t0001g0044 a0001c0002t0002g0042 a0001c0002t0002g0043 a0001c0002t0002g0048 a0001c0002t0002g0050 a0001c0002t0002g0051 a0001c0002t0002g0052 a0001c0002t0002g0071 a0001c0008t0010g0061 a0001c0008t0010g0062	10	174	0.0575	17	c.595 others(36): Show c.595+44750_595+44766dupAAAAAAAAAAAAAAAAA	ZSWIM5	ENSG00000162415.7	transcript	ENST00000359600.6	protein_coding	1/13			chr1	TogoVar
ZSWIM7_chr17_15971560_16004704	15976067	G G	GAAAAAAA others(10): Show GAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03017.hp2 HG03195.hp2 NA19063.hp1 HG03017.hp2 HG03195.hp2 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0113 a0001c0001t0001g0139 a0001c0001t0001g0147 a0001c0001t0001g0113 a0001c0001t0001g0139 a0001c0001t0001g0147	3	270	0.0111	17	c.19 others(28): Show c.1979_*1980insTTTTTTTTTTTTTTTTT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		492		chr17	TogoVar
ZSWIM7_chr17_15971560_16004704	15976098	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAAAAAAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01981.hp1 HG01981.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0136 a0001c0001t0001g0136	1	185	0.0054	17	c.19 others(28): Show c.1948_*1949insATTTTTTTTTTTTTTTT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		461		chr17	TogoVar
ZSWIM7_chr17_15971560_16004704	15976098	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAAAATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01099.hp1 NA19062.hp2 HG01099.hp1 NA19062.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0124 a0001c0001t0001g0155 a0001c0001t0001g0124 a0001c0001t0001g0155	2	186	0.0108	17	c.19 others(28): Show c.1948_*1949insATATTTTTTTTTTTTTT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		461		chr17	TogoVar
ZSWIM7_chr17_15971560_16004704	15976098	A A	AAAAAAAA others(10): Show AAAAAAAAAAATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03490.hp2 HG03490.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0028 a0001c0001t0001g0028	1	185	0.0054	17	c.19 others(28): Show c.1948_*1949insATATATATTTTTTTTTT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		461		chr17	TogoVar
ZSWIM8_chr10_73780606_73806793	73785604	G G	GCAGCCGC others(10): Show GCAGCCGCCTAGAGGCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0073 a0001c0001t0001g0073	1	312	0.0032	17	c.-27 others(26): Show c.-275_-274insCAGCCGCCTAGAGGCCC	ZSWIM8	ENSG00000214655.11	transcript	ENST00000604729.6	protein_coding		1		chr10	TogoVar
ZSWIM9_chr19_48165680_48202620	48192476	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02976.hp1 HG02886.hp2 HG02976.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0002 a0001c0004t0001 a0001c0002t0002 a0001c0004t0001	a0001c0002t0002g0036 a0001c0004t0001g0342 a0001c0002t0002g0036 a0001c0004t0001g0342	2	145	0.0138	17	c.589 others(34): Show c.589-2177_589-2176insTATATATATATATATAT	ZSWIM9	ENSG00000185453.13	transcript	ENST00000614654.2	protein_coding	3/3			chr19	TogoVar
ZSWIM9_chr19_48165680_48202620	48192478	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0246 a0001c0004t0001g0246	1	123	0.0081	17	c.589 others(34): Show c.589-2175_589-2174insTATATATATATATATAT	ZSWIM9	ENSG00000185453.13	transcript	ENST00000614654.2	protein_coding	3/3			chr19	TogoVar
ZSWIM9_chr19_48165680_48202620	48192480	A A	AAATATAT others(10): Show AAATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19060.hp2 NA19060.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0071 a0001c0002t0001g0071	1	49	0.0204	17	c.589 others(34): Show c.589-2172_589-2171insATATATATATATATATA	ZSWIM9	ENSG00000185453.13	transcript	ENST00000614654.2	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr19	TogoVar
ZWILCH_chr15_66500326_66555130	66544722	T T	TGTGTGTG others(10): Show TGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG01934.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0005 a0003c0003t0005	a0003c0003t0005g0303 a0003c0003t0005g0303	1	368	0.0027	17	c.168 others(36): Show c.1688-1869_1688-1868insGTGTGTGTGTGTGTGTG	ZWILCH	ENSG00000174442.12	transcript	ENST00000307897.10	protein_coding	17/18			chr15	TogoVar
ZXDB_chrX_57587011_57602477	57598640	A A	ATGATTTC others(10): Show ATGATTTCAAATATCAGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02165.hp1 HG02165.hp2 HG02165.hp1 HG02165.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	2	295	0.0068	17	c.41 others(28): Show c.4180_*4181insTGATTTCAAATATCAGG	ZXDB	ENSG00000198455.5	transcript	ENST00000374888.3	protein_coding		1164		chrX	TogoVar
ZYG11A_chr1_52837760_52899998	52891848	T T	TTGTACAT others(10): Show TTGTACATTTATTTATAA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01891.hp1 HG02055.hp1 others(17): Show HG01884.hp2 HG01891.hp1 HG02055.hp1 HG02109.hp2 HG02486.hp1 HG02572.hp2 HG02622.hp1 HG02630.hp1 HG02647.hp2 HG02723.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02970.hp2 HG03486.hp2 HG03516.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0020 a0001c0001t0004 a0001c0001t0020	a0001c0001t0004g0001 a0001c0001t0004g0026 a0001c0001t0004g0027 others(16): Show a0001c0001t0004g0001 a0001c0001t0004g0026 a0001c0001t0004g0027 a0001c0001t0004g0028 a0001c0001t0004g0029 a0001c0001t0004g0030 a0001c0001t0004g0031 a0001c0001t0004g0032 a0001c0001t0004g0039 a0001c0001t0004g0040 a0001c0001t0004g0041 a0001c0001t0004g0042 a0001c0001t0004g0043 a0001c0001t0004g0044 a0001c0001t0004g0045 a0001c0001t0004g0046 a0001c0001t0004g0047 a0001c0001t0004g0049 a0001c0001t0020g0033	20	288	0.0694	17	c.210 others(34): Show c.2105-926_2105-925insTATTTATAATGTACATT	ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52773627	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03516.hp1 NA18971.hp1 NA19065.hp2 others(1): Show HG03516.hp1 NA18971.hp1 NA19065.hp2 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0010 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0010 a0001c0001t0021	a0001c0001t0001g0091 a0001c0001t0004g0025 a0001c0001t0010g0264 others(1): Show a0001c0001t0001g0091 a0001c0001t0004g0025 a0001c0001t0010g0264 a0001c0001t0021g0053	4	159	0.0252	17	c.951 others(34): Show c.951+1854_951+1855insATATATATATATATATT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52773627	A A	ATATATAT others(10): Show ATATATATATATATATTT	intron_variant intron_variant	MODIFIER	NA18959.hp2 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	156	0.0064	17	c.951 others(34): Show c.951+1854_951+1855insATATATATATATATTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52773627	A A	ATATATAT others(10): Show ATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	NA18975.hp1 NA18975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0085	1	156	0.0064	17	c.951 others(34): Show c.951+1854_951+1855insATATATATATATTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52773628	T T	TATATATA others(10): Show TATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0100 a0001c0001t0001g0100	1	303	0.0033	17	c.951 others(34): Show c.951+1854_951+1855insATATATATATATATATA	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13			chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52776229	A A	AAAAAAAT others(10): Show AAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG02135.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0069 a0001c0001t0001g0069	1	9	0.1111	17	c.952 others(34): Show c.952-3623_952-3622insAAAAATATATATATATA	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYX_chr7_143376345_143396111	143385660	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00642.hp1 NA18973.hp1 HG00642.hp1 NA18973.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0130 a0001c0001t0001g0138 a0001c0001t0001g0130 a0001c0001t0001g0138	2	101	0.0198	17	c.102 others(36): Show c.1023+2348_1023+2364dupTTTTTTTTTTTTTTTTT	ZYX	ENSG00000159840.16	transcript	ENST00000322764.10	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr7	TogoVar

Search by Variant

Search

Search Results