Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GPALPP1_chr13_44984538_45035305	44995169	A A	AACACACA others(11): Show AACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02040.hp2 HG02129.hp1 others(10): Show HG00639.hp2 HG02040.hp2 HG02129.hp1 HG03098.hp2 HG03225.hp1 HG03942.hp1 NA18948.hp1 NA18950.hp2 NA18955.hp1 NA18959.hp2 NA18966.hp2 NA19085.hp2 NA19088.hp1	a0001 a0006 a0001 a0006	a0001c0001 a0006c0007 a0001c0001 a0006c0007	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0010 a0001c0001t0013 a0006c0007t0010	a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0003g0246 others(10): Show a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0003g0246 a0001c0001t0003g0247 a0001c0001t0003g0248 a0001c0001t0003g0249 a0001c0001t0003g0260 a0001c0001t0004g0302 a0001c0001t0006g0303 a0001c0001t0006g0304 a0001c0001t0010g0215 a0001c0001t0013g0214 a0006c0007t0010g0217	13	348	0.0374	18	c.88+ others(33): Show c.88+5444_88+5461dupACACACACACACACACAC	GPALPP1	ENSG00000133114.18	transcript	ENST00000379151.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPAT2_chr2_96016946_96039916	96037026	T T	TTCTCTCT others(11): Show TTCTCTCTCTCTCTCTCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0089 a0001c0003t0001g0089	1	422	0.0024	18	c.-22 others(29): Show c.-2252_-2235dupGAGAGAGAGAGAGAGAGA	GPAT2	ENSG00000186281.13	transcript	ENST00000434632.6	protein_coding		2111		chr2	TogoVar
GPAT3_chr4_83531108_83610875	83549711	T T	TTTATTAT others(11): Show TTTATTATTATTATTATTA	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02922.hp1 HG02976.hp1 others(3): Show HG02055.hp1 HG02922.hp1 HG02976.hp1 HG03130.hp2 HG03139.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 others(1): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0015	a0001c0001t0002g0232 a0001c0001t0002g0233 a0001c0001t0002g0234 others(3): Show a0001c0001t0002g0232 a0001c0001t0002g0233 a0001c0001t0002g0234 a0001c0001t0004g0228 a0001c0001t0005g0319 a0001c0001t0015g0003	6	334	0.0180	18	c.208 others(35): Show c.208+5126_208+5127insATTATTATTATTATTATT	GPAT3	ENSG00000138678.11	transcript	ENST00000264409.5	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GPAT3_chr4_83531108_83610875	83551813	A A	AAAATCTA others(11): Show AAAATCTATCTATCTATCT	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01109.hp1 HG01168.hp2 others(22): Show HG01070.hp2 HG01109.hp1 HG01168.hp2 HG01243.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01433.hp2 HG01517.hp1 HG01981.hp2 HG02004.hp2 HG02486.hp1 HG02735.hp1 HG02809.hp2 HG02922.hp2 HG02965.hp2 HG03139.hp1 HG03491.hp2 HG03831.hp2 NA18906.hp2 NA18975.hp1 NA19010.hp2 NA19030.hp1 NA19077.hp2 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0010 a0001c0001t0011	a0001c0001t0001g0298 a0001c0001t0001g0301 a0001c0001t0002g0185 others(22): Show a0001c0001t0001g0298 a0001c0001t0001g0301 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0217 a0001c0001t0002g0218 a0001c0001t0002g0254 a0001c0001t0002g0256 a0001c0001t0002g0258 a0001c0001t0002g0272 a0001c0001t0002g0273 a0001c0001t0002g0274 a0001c0001t0002g0300 a0001c0001t0002g0312 a0001c0001t0002g0315 a0001c0001t0002g0323 a0001c0001t0003g0299 a0001c0001t0003g0302 a0001c0001t0004g0187 a0001c0001t0004g0188 a0001c0001t0004g0307 a0001c0001t0005g0220 a0001c0001t0010g0246 a0001c0001t0010g0268 a0001c0001t0011g0275	25	334	0.0749	18	c.208 others(35): Show c.208+7212_208+7213insAATCTATCTATCTATCTA	GPAT3	ENSG00000138678.11	transcript	ENST00000264409.5	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GPAT3_chr4_83531108_83610875	83574624	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19006.hp1 NA19006.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0329 a0001c0001t0002g0329	1	334	0.0030	18	c.209 others(35): Show c.209-6902_209-6885dupTTTTTTTTTTTTTTTTTT	GPAT3	ENSG00000138678.11	transcript	ENST00000264409.5	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GPATCH2L_chr14_76146922_76219343	76194484	A A	AGTGTGTG others(11): Show AGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02897.hp1 HG02897.hp2 others(2): Show HG02559.hp2 HG02897.hp1 HG02897.hp2 HG04199.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0013 a0001c0001t0026 a0001c0001t0040 others(1): Show a0001c0001t0013 a0001c0001t0026 a0001c0001t0040 a0001c0003t0006	a0001c0001t0013g0135 a0001c0001t0013g0144 a0001c0001t0026g0163 others(2): Show a0001c0001t0013g0135 a0001c0001t0013g0144 a0001c0001t0026g0163 a0001c0001t0040g0154 a0001c0003t0006g0118	5	402	0.0124	18	c.119 others(37): Show c.1194-1390_1194-1373dupTGTGTGTGTGTGTGTGTG	GPATCH2L	ENSG00000089916.18	transcript	ENST00000261530.12	protein_coding	8/9		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPATCH2_chr1_217421992_217636090	217529699	T T	TGTTCCTC others(11): Show TGTTCCTCCACCAATGTAC	intron_variant intron_variant	MODIFIER	NA18994.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0039 a0001c0001t0003g0039	1	188	0.0053	18	c.109 others(39): Show c.1099-14828_1099-14811dupGTACATTGGTGGAGGAAC	GPATCH2	ENSG00000092978.11	transcript	ENST00000366935.8	protein_coding	5/9			chr1	TogoVar
GPATCH8_chr17_44390281_44508406	44429647	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02132.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0305 a0001c0002t0001g0305	1	326	0.0031	18	c.349 others(35): Show c.349-5156_349-5155insGTGTGTGTGTGTGTGTGT	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	5/7			chr17	TogoVar
GPATCH8_chr17_44390281_44508406	44429649	A A	AACACACA others(11): Show AACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00408.hp1 HG00621.hp1 others(25): Show HG00099.hp2 HG00408.hp1 HG00621.hp1 HG01106.hp2 HG01168.hp1 HG01243.hp1 HG01496.hp2 HG01884.hp2 HG01952.hp2 HG01978.hp2 HG01993.hp2 HG02004.hp1 HG02015.hp2 HG02071.hp2 HG02451.hp2 HG02523.hp2 HG02965.hp2 HG03710.hp1 HG04204.hp2 NA18941.hp1 NA18944.hp1 NA18964.hp1 NA18967.hp1 NA19003.hp1 NA19043.hp1 NA19064.hp2 NA20129.hp2 NA21309.hp1	a0001 a0004 a0001 a0004	a0001c0002 a0001c0004 a0004c0015 a0001c0002 a0001c0004 a0004c0015	a0001c0002t0001 a0001c0002t0006 a0001c0002t0009 others(3): Show a0001c0002t0001 a0001c0002t0006 a0001c0002t0009 a0001c0002t0014 a0001c0004t0001 a0004c0015t0001	a0001c0002t0001g0167 a0001c0002t0001g0198 a0001c0002t0001g0206 others(25): Show a0001c0002t0001g0167 a0001c0002t0001g0198 a0001c0002t0001g0206 a0001c0002t0001g0207 a0001c0002t0001g0208 a0001c0002t0001g0215 a0001c0002t0001g0234 a0001c0002t0001g0245 a0001c0002t0001g0246 a0001c0002t0001g0249 a0001c0002t0001g0255 a0001c0002t0001g0256 a0001c0002t0001g0262 a0001c0002t0001g0263 a0001c0002t0001g0265 a0001c0002t0001g0281 a0001c0002t0001g0284 a0001c0002t0001g0286 a0001c0002t0001g0287 a0001c0002t0001g0292 a0001c0002t0001g0293 a0001c0002t0001g0294 a0001c0002t0001g0304 a0001c0002t0006g0272 a0001c0002t0009g0278 a0001c0002t0014g0254 a0001c0004t0001g0219 a0004c0015t0001g0200	28	326	0.0859	18	c.349 others(35): Show c.349-5175_349-5158dupGTGTGTGTGTGTGTGTGT	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	5/7			chr17	TogoVar
GPATCH8_chr17_44390281_44508406	44453490	G G	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00099.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0262 a0001c0002t0001g0262	1	326	0.0031	18	c.193 others(37): Show c.193+10981_193+10982insACACACACACACACACAC	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	3/7			chr17	TogoVar
GPATCH8_chr17_44390281_44508406	44453494	G G	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG02040.hp2 HG02896.hp1 others(8): Show HG01496.hp1 HG02040.hp2 HG02896.hp1 HG04204.hp2 NA18612.hp2 NA18939.hp1 NA18951.hp1 NA18986.hp2 NA19070.hp2 NA19081.hp1 NA20752.hp2	a0001 a0003 a0001 a0003	a0001c0002 a0001c0003 a0001c0004 others(1): Show a0001c0002 a0001c0003 a0001c0004 a0003c0006	a0001c0002t0001 a0001c0003t0001 a0001c0004t0001 others(1): Show a0001c0002t0001 a0001c0003t0001 a0001c0004t0001 a0003c0006t0001	a0001c0002t0001g0231 a0001c0002t0001g0236 a0001c0002t0001g0241 others(8): Show a0001c0002t0001g0231 a0001c0002t0001g0236 a0001c0002t0001g0241 a0001c0002t0001g0245 a0001c0002t0001g0259 a0001c0002t0001g0275 a0001c0002t0001g0316 a0001c0002t0001g0317 a0001c0003t0001g0175 a0001c0004t0001g0285 a0003c0006t0001g0239	11	326	0.0337	18	c.193 others(37): Show c.193+10977_193+10978insACACACACACACACACAC	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	3/7			chr17	TogoVar
GPATCH8_chr17_44390281_44508406	44483154	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01943.hp1 HG06807.hp2 NA18973.hp1 HG01943.hp1 HG06807.hp2 NA18973.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0084 a0001c0001t0001g0091 a0001c0001t0001g0195 a0001c0001t0001g0084 a0001c0001t0001g0091 a0001c0001t0001g0195	3	326	0.0092	18	c.46- others(33): Show c.46-8269_46-8252dupTTTTTTTTTTTTTTTTTT	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	1/7			chr17	TogoVar
GPATCH8_chr17_44390281_44508406	44483176	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAAAAAAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01928.hp2 HG02622.hp1 HG00642.hp1 HG01928.hp2 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0079 a0001c0001t0001g0131 a0001c0002t0001g0224 a0001c0001t0001g0079 a0001c0001t0001g0131 a0001c0002t0001g0224	3	326	0.0092	18	c.46- others(33): Show c.46-8274_46-8273insATTTTTTTTTTTTTTTTT	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	1/7			chr17	TogoVar
GPATCH8_chr17_44390281_44508406	44483176	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAAAATAT	intron_variant intron_variant	MODIFIER	HG01975.hp2 HG02896.hp2 HG01975.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0129 a0001c0001t0001g0040 a0001c0001t0001g0129	2	326	0.0061	18	c.46- others(33): Show c.46-8274_46-8273insATATTTTTTTTTTTTTTT	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	1/7			chr17	TogoVar
GPATCH8_chr17_44390281_44508406	44483176	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAATATAT	intron_variant intron_variant	MODIFIER	NA19005.hp1 NA19005.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0283 a0001c0002t0001g0283	1	326	0.0031	18	c.46- others(33): Show c.46-8274_46-8273insATATATTTTTTTTTTTTT	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	1/7			chr17	TogoVar
GPATCH8_chr17_44390281_44508406	44483176	A A	AAAAAAAA others(11): Show AAAAAAAAAAAATATATAT	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG02015.hp2 NA18968.hp1 others(1): Show HG00280.hp2 HG02015.hp2 NA18968.hp1 NA19066.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0025 a0001c0001t0001g0037 a0001c0002t0001g0248 others(1): Show a0001c0001t0001g0025 a0001c0001t0001g0037 a0001c0002t0001g0248 a0001c0002t0001g0249	4	326	0.0123	18	c.46- others(33): Show c.46-8274_46-8273insATATATATTTTTTTTTTT	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	1/7			chr17	TogoVar
GPATCH8_chr17_44390281_44508406	44483176	A A	AAAAAAAA others(11): Show AAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG01358.hp2 NA19043.hp1 others(2): Show HG01169.hp2 HG01358.hp2 NA19043.hp1 NA19057.hp1 NA19085.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0006 a0001c0002t0001 a0001c0002t0006	a0001c0002t0001g0267 a0001c0002t0001g0308 a0001c0002t0001g0320 others(2): Show a0001c0002t0001g0267 a0001c0002t0001g0308 a0001c0002t0001g0320 a0001c0002t0001g0322 a0001c0002t0006g0272	5	326	0.0153	18	c.46- others(33): Show c.46-8274_46-8273insATATATATATTTTTTTTT	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	1/7			chr17	TogoVar
GPATCH8_chr17_44390281_44508406	44483176	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0214 a0001c0002t0001g0214	1	326	0.0031	18	c.46- others(33): Show c.46-8291_46-8274dupATATATATATATATATAT	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	1/7			chr17	TogoVar
GPBAR1_chr2_218256015_218268861	218266215	A A	ATCCTAAC others(11): Show ATCCTAACTGGCTCTGTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0003 a0001c0001t0003g0003	1	406	0.0025	18	c.24 others(29): Show c.2498_*2499insTCCTAACTGGCTCTGTCT	GPBAR1	ENSG00000179921.15	transcript	ENST00000519574.2	protein_coding		2355		chr2	TogoVar
GPBP1L1_chr1_45622304_45691533	45641453	T T	TACACATA others(11): Show TACACATAAACACACACAC	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0010 a0001c0001t0003g0010	1	292	0.0034	18	c.550 others(33): Show c.550+956_550+973dupGTGTGTGTGTTTATGTGT	GPBP1L1	ENSG00000159592.11	transcript	ENST00000355105.8	protein_coding	7/12			chr1	TogoVar
GPBP1_chr5_57169059_57269673	57211576	T T	TTTGTTGT others(11): Show TTTGTTGTTGTTGTTGTTG	intron_variant intron_variant	MODIFIER	HG02148.hp1 HG02630.hp2 HG02148.hp1 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0204 a0001c0001t0002g0225 a0001c0001t0002g0204 a0001c0001t0002g0225	2	290	0.0069	18	c.-57 others(35): Show c.-57-2488_-57-2471dupTTGTTGTTGTTGTTGTTG	GPBP1	ENSG00000062194.16	transcript	ENST00000506184.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
GPC1_chr2_240430663_240473076	240460642	T T	TCTGCTGC others(11): Show TCTGCTGCCCTCTGGAAGC	intron_variant intron_variant	MODIFIER	NA19072.hp1 NA19072.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0208 a0001c0003t0003g0208	1	398	0.0025	18	c.325 others(35): Show c.325+1457_325+1474dupGCTGCCCTCTGGAAGCCT	GPC1	ENSG00000063660.9	transcript	ENST00000264039.7	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr2	TogoVar
GPC2_chr7_100164606_100182381	100168003	G G	GACACACA others(11): Show GACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0011 a0001c0004t0003g0011	1	400	0.0025	18	c.22 others(29): Show c.2226_*2227insGTGTGTGTGTGTGTGTGT	GPC2	ENSG00000213420.8	transcript	ENST00000292377.4	protein_coding		1602		chr7	TogoVar
GPC3_chrX_133530745_133990594	133530880	T T	TACACACA others(11): Show TACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp1 HG02055.hp1 HG02109.hp1 others(8): Show HG00280.hp1 HG02055.hp1 HG02109.hp1 HG02257.hp2 NA18960.hp1 NA18966.hp1 NA18985.hp1 NA18989.hp1 NA18994.hp1 NA19000.hp1 NA19076.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0002t0002	a0001c0001t0001g0023 a0001c0001t0001g0052 a0001c0001t0001g0064 others(8): Show a0001c0001t0001g0023 a0001c0001t0001g0052 a0001c0001t0001g0064 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0078 a0001c0001t0001g0086 a0001c0001t0003g0100 a0001c0001t0006g0148 a0001c0002t0002g0126 a0001c0002t0002g0146	11	152	0.0724	18	c.52 others(29): Show c.5243_*5244insGTGTGTGTGTGTGTGTGT	GPC3	ENSG00000147257.16	transcript	ENST00000370818.8	protein_coding		4864		chrX	TogoVar
GPC3_chrX_133530745_133990594	133841215	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01261.hp1 HG01433.hp1 others(2): Show HG00140.hp1 HG01261.hp1 HG01433.hp1 HG01928.hp1 HG02300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 others(2): Show a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0123 a0001c0001t0001g0150	5	152	0.0329	18	c.338 others(37): Show c.338-87057_338-87040dupAAAAAAAAAAAAAAAAAA	GPC3	ENSG00000147257.16	transcript	ENST00000370818.8	protein_coding	2/7			chrX	TogoVar
GPC3_chrX_133530745_133990594	133855530	G G	GATATATA others(11): Show GATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG02056.hp1 HG02572.hp1 others(6): Show HG00673.hp1 HG02056.hp1 HG02572.hp1 HG02965.hp1 HG03471.hp1 HG03704.hp1 HG06807.hp1 NA18965.hp1 NA19076.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0006 a0001c0002t0002 others(1): Show a0001c0001t0001 a0001c0001t0006 a0001c0002t0002 a0001c0002t0005	a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0130 others(6): Show a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0130 a0001c0001t0001g0139 a0001c0001t0001g0145 a0001c0001t0006g0148 a0001c0002t0002g0061 a0001c0002t0002g0129 a0001c0002t0005g0060	9	152	0.0592	18	c.337 others(37): Show c.337+97502_337+97519dupATATATATATATATATAT	GPC3	ENSG00000147257.16	transcript	ENST00000370818.8	protein_coding	2/7			chrX	TogoVar
GPC4_chrX_133295103_133420489	133344191	G G	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0214 a0001c0001t0023g0214	1	221	0.0045	18	c.161 others(35): Show c.161-4868_161-4851dupAAAAAAAAAAAAAAAAAA	GPC4	ENSG00000076716.9	transcript	ENST00000370828.4	protein_coding	1/8			chrX	TogoVar
GPC4_chrX_133295103_133420489	133404866	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0015 a0001c0004t0015	a0001c0004t0015g0006 a0001c0004t0015g0006	1	221	0.0045	18	c.160 others(35): Show c.160+9939_160+9940insCTTTTTTTTTTTTTTTTT	GPC4	ENSG00000076716.9	transcript	ENST00000370828.4	protein_coding	1/8			chrX	TogoVar
GPC5_chr13_91393621_92872237	91432184	A A	ACTGCTGC others(11): Show ACTGCTGCTGCTGCTGCTG	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0027 a0001c0001t0001g0027	1	42	0.0238	18	c.164 others(37): Show c.164-16573_164-16556dupCTGCTGCTGCTGCTGCTG	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	91478822	T T	TATATATA others(11): Show TATATATATATATACACAC	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0011 a0001c0001t0001g0011	1	42	0.0238	18	c.325 others(37): Show c.325+29901_325+29902insTATATATATATACACACA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	91478822	T T	TATATATA others(11): Show TATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0029 a0001c0001t0001g0029	1	42	0.0238	18	c.325 others(37): Show c.325+29901_325+29902insTATATATATATATACACA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	91650750	G G	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0026 a0002c0002t0004g0026	1	42	0.0238	18	c.326 others(37): Show c.326-42432_326-42415dupTTTTTTTTTTTTTTTTTT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	91907503	T T	TTATATAT others(11): Show TTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0021	1	42	0.0238	18	c.128 others(35): Show c.1281-429_1281-412dupTATATATATATATATATA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92004458	T T	TTATATAT others(11): Show TTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	42	0.0238	18	c.140 others(39): Show c.1401+96416_1401+96433dupTATATATATATATATATA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92009253	C C	CGTGTGTG others(11): Show CGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0004 a0001c0001t0003g0004	1	42	0.0238	18	c.140 others(41): Show c.1401+101211_1401+101228dupGTGTGTGTGTGTGTGTGT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92257546	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02809.hp2 HG02922.hp1 others(2): Show HG02280.hp2 HG02809.hp2 HG02922.hp1 HG03041.hp1 HG03239.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0003 a0002c0002t0004 a0001c0001t0001 a0001c0001t0003 a0002c0002t0004	a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0033 others(2): Show a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0033 a0001c0001t0003g0003 a0002c0002t0004g0026	5	42	0.1191	18	c.156 others(41): Show c.1561+112561_1561+112578dupTTTTTTTTTTTTTTTTTT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92398428	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG03486.hp2 HG02622.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0022 a0001c0001t0002g0036 a0001c0001t0001g0022 a0001c0001t0002g0036	2	42	0.0476	18	c.156 others(41): Show c.1561+253444_1561+253461dupAAAAAAAAAAAAAAAAAA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92421698	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02622.hp2 HG02615.hp2 HG02622.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0006 a0001c0001 a0004c0006	a0001c0001t0002 a0004c0006t0001 a0001c0001t0002 a0004c0006t0001	a0001c0001t0002g0034 a0004c0006t0001g0028 a0001c0001t0002g0034 a0004c0006t0001g0028	2	42	0.0476	18	c.156 others(41): Show c.1561+276714_1561+276731dupAAAAAAAAAAAAAAAAAA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92632463	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0020	1	42	0.0238	18	c.156 others(41): Show c.1562-233813_1562-233796dupTATATATATATATATATA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92692754	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0013	1	42	0.0238	18	c.156 others(41): Show c.1562-173523_1562-173506dupTTTTTTTTTTTTTTTTTT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92751302	T T	TAAAAAAA others(11): Show TAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02615.hp1 HG02896.hp1 others(1): Show HG02145.hp2 HG02615.hp1 HG02896.hp1 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0030 others(1): Show a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0030 a0001c0001t0003g0002	4	42	0.0952	18	c.156 others(41): Show c.1562-114980_1562-114979insAAAAAAAAAAAAAAAAAA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7			chr13	TogoVar
GPC6_chr13_93221807_94413020	93295290	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG02922.hp2 HG01981.hp1 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0036 a0001c0001t0013 a0001c0001t0036	a0001c0001t0013g0055 a0001c0001t0036g0001 a0001c0001t0013g0055 a0001c0001t0036g0001	2	76	0.0263	18	c.160 others(37): Show c.160+67680_160+67697dupAAAAAAAAAAAAAAAAAA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93324587	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0028 a0002c0002t0028	a0002c0002t0028g0004 a0002c0002t0028g0004	1	76	0.0132	18	c.160 others(37): Show c.160+96979_160+96996dupTATATATATATATATATA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93895222	A A	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG03486.hp1 HG02886.hp2 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0001 a0001c0001t0013	a0001c0001t0001g0029 a0001c0001t0013g0030 a0001c0001t0001g0029 a0001c0001t0013g0030	2	76	0.0263	18	c.711 others(37): Show c.711+64690_711+64691insGTGTGTGTGTGTGTGTGT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93930275	G G	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0070 a0001c0001t0004g0070	1	76	0.0132	18	c.712 others(37): Show c.712-97441_712-97440insTTTTTTTTTTTTTTTTTT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93997581	A A	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0036 a0001c0001t0015g0036	1	76	0.0132	18	c.712 others(37): Show c.712-30139_712-30122dupTGTGTGTGTGTGTGTGTG	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94150814	G G	GTATATAT others(11): Show GTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG02895.hp2 HG03209.hp2 others(1): Show HG01975.hp1 HG02895.hp2 HG03209.hp2 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0015 a0001c0001t0001 a0001c0001t0009 a0001c0001t0015	a0001c0001t0001g0026 a0001c0001t0001g0075 a0001c0001t0009g0038 others(1): Show a0001c0001t0001g0026 a0001c0001t0001g0075 a0001c0001t0009g0038 a0001c0001t0015g0048	4	76	0.0526	18	c.877 others(39): Show c.877+122937_877+122938insATATATATATATATATAT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94288940	T T	TTTGTTAT others(11): Show TTTGTTATATATATAACAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02451.hp1 HG02647.hp1 others(2): Show HG01884.hp1 HG02451.hp1 HG02647.hp1 HG02886.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0009 a0001c0001t0011 others(2): Show a0001c0001t0005 a0001c0001t0009 a0001c0001t0011 a0001c0001t0016 a0001c0001t0019	a0001c0001t0005g0050 a0001c0001t0009g0038 a0001c0001t0011g0010 others(2): Show a0001c0001t0005g0050 a0001c0001t0009g0038 a0001c0001t0011g0010 a0001c0001t0016g0018 a0001c0001t0019g0074	5	76	0.0658	18	c.100 others(37): Show c.1008+2461_1008+2462insTTGTTATATATATAACAA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	5/8			chr13	TogoVar
GPCPD1_chr20_5539439_5616006	5559359	G G	GAAGCTCA others(11): Show GAAGCTCACTTGAGCCTAA	intron_variant intron_variant	MODIFIER	NA18985.hp1 NA18985.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0314 a0001c0001t0004g0314	1	386	0.0026	18	c.153 others(35): Show c.1533-558_1533-541dupTTAGGCTCAAGTGAGCTT	GPCPD1	ENSG00000125772.14	transcript	ENST00000379019.7	protein_coding	17/19			chr20	TogoVar
GPCPD1_chr20_5539439_5616006	5581814	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0359 a0002c0002t0006g0359	1	386	0.0026	18	c.350 others(35): Show c.350-1701_350-1684dupAAAAAAAAAAAAAAAAAA	GPCPD1	ENSG00000125772.14	transcript	ENST00000379019.7	protein_coding	6/19			chr20	TogoVar

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