Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LETM1_chr4_1806479_1861156	1860667	G G	GTGTGTAT others(11): Show GTGTGTATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp1 HG02257.hp2 HG03098.hp2 others(1): Show HG01168.hp1 HG02257.hp2 HG03098.hp2 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0003 a0001c0002 a0002c0003	a0001c0002t0004 a0001c0002t0017 a0002c0003t0009 a0001c0002t0004 a0001c0002t0017 a0002c0003t0009	a0001c0002t0004g0013 a0001c0002t0004g0014 a0001c0002t0017g0012 others(1): Show a0001c0002t0004g0013 a0001c0002t0004g0014 a0001c0002t0017g0012 a0002c0003t0009g0185	4	200	0.0200	18	c.-47 others(29): Show c.-4718_-4717insTATATATATATATACACA	LETM1	ENSG00000168924.15	transcript	ENST00000302787.3	protein_coding		4512		chr4	TogoVar
LEUTX_chr19_39773854_39791291	39789487	G G	GATATATA others(11): Show GATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00642.hp2 HG00738.hp2 HG01256.hp1 others(1): Show HG00642.hp2 HG00738.hp2 HG01256.hp1 NA20805.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0015 a0002c0002t0001g0015	4	476	0.0084	18	c.33 others(29): Show c.3352_*3353insATATATATATATATATAT	LEUTX	ENSG00000213921.8	transcript	ENST00000638280.2	protein_coding		3197		chr19	TogoVar
LFNG_chr7_2514774_2533429	2531235	G G	GCTTCTGA others(11): Show GCTTCTGAGCCAGCCCCAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18982.hp2 NA19089.hp1 NA18982.hp2 NA19089.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0030 a0001c0001t0001g0031	2	414	0.0048	18	c.40 others(29): Show c.4023_*4024insCTTCTGAGCCAGCCCCAC	LFNG	ENSG00000106003.14	transcript	ENST00000222725.10	protein_coding		2807		chr7	TogoVar
LGALS16_chr19_39650913_39665647	39663745	A A	ACCCTCTC others(11): Show ACCCTCTCTCTCTCTCTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18957.hp1 NA18957.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	442	0.0023	18	c.32 others(29): Show c.3225_*3226insCCCTCTCTCTCTCTCTCT	LGALS16	ENSG00000249861.4	transcript	ENST00000392051.4	protein_coding		3099		chr19	TogoVar
LGALS16_chr19_39650913_39665647	39663851	T T	TATATGTA others(11): Show TATATGTATGTATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0008 a0002c0002t0001g0008	1	442	0.0023	18	c.33 others(29): Show c.3331_*3332insATATGTATGTATATATAC	LGALS16	ENSG00000249861.4	transcript	ENST00000392051.4	protein_coding		3205		chr19	TogoVar
LGALS3BP_chr17_78966255_78984923	78966726	C C	CCACACAC others(11): Show CCACACACACACATGCGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19057.hp2 NA19057.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0009	1	456	0.0022	18	c.48 others(29): Show c.4849_*4850insCACGCATGTGTGTGTGTG	LGALS3BP	ENSG00000108679.13	transcript	ENST00000262776.8	protein_coding		4528		chr17	TogoVar
LGALS8_chr1_236518982_236557981	236538101	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00621.hp2 HG00642.hp2 others(49): Show HG00438.hp1 HG00621.hp2 HG00642.hp2 HG00735.hp1 HG00741.hp1 HG01099.hp2 HG01175.hp1 HG01175.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp2 HG01433.hp2 HG01943.hp1 HG01978.hp1 HG02004.hp1 HG02155.hp1 HG02165.hp1 HG02257.hp1 HG02300.hp1 HG02602.hp2 HG02683.hp1 HG03017.hp1 HG03654.hp2 HG03688.hp1 HG04199.hp2 NA18947.hp1 NA18949.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp2 NA18956.hp2 NA18966.hp1 NA18968.hp1 NA18968.hp2 NA18971.hp2 NA18974.hp1 NA18994.hp2 NA19001.hp1 NA19006.hp1 NA19007.hp2 NA19009.hp2 NA19011.hp2 NA19066.hp2 NA19077.hp2 NA19081.hp2 NA19083.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0001 a0001c0001t0010 a0001c0001t0030 others(1): Show a0001c0001t0001 a0001c0001t0010 a0001c0001t0030 a0001c0009t0001	a0001c0001t0001g0005 a0001c0001t0001g0010 a0001c0001t0001g0015 others(30): Show a0001c0001t0001g0005 a0001c0001t0001g0010 a0001c0001t0001g0015 a0001c0001t0001g0035 a0001c0001t0001g0038 a0001c0001t0001g0126 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0136 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0157 a0001c0001t0001g0161 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0166 a0001c0001t0001g0176 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0184 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0204 a0001c0001t0001g0271 a0001c0001t0010g0005 a0001c0001t0010g0175 a0001c0001t0030g0251 a0001c0009t0001g0134	52	450	0.1156	18	c.134 others(33): Show c.134+519_134+520insAAAAAAAAAAAAAAGAAA	LGALS8	ENSG00000116977.19	transcript	ENST00000366584.9	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
LGI1_chr10_93752936_93803159	93794968	C C	CCTTTTGG others(11): Show CCTTTTGGAATCCTCCTTT	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01358.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0174 a0001c0001t0001g0174	1	376	0.0027	18	c.838 others(35): Show c.838+1624_838+1641dupGGAATCCTCCTTTCTTTT	LGI1	ENSG00000108231.14	transcript	ENST00000371418.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr10	TogoVar
LGMN_chr14_92698809_92753627	92708856	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0096 a0001c0002t0002g0096	1	420	0.0024	18	c.102 others(35): Show c.1020+798_1020+815dupTTTTTTTTTTTTTTTTTT	LGMN	ENSG00000100600.15	transcript	ENST00000334869.9	protein_coding	11/13			chr14	TogoVar
LGR4_chr11_27360961_27477790	27362901	T T	TTCATCCA others(11): Show TTCATCCACGTCTTCCTCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0034 a0001c0002t0005g0034	1	244	0.0041	18	c.49 others(29): Show c.4948_*4965dupTGAGGAAGACGTGGATGA	LGR4	ENSG00000205213.14	transcript	ENST00000379214.9	protein_coding		3059		chr11	TogoVar
LGR4_chr11_27360961_27477790	27474121	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp2 HG01943.hp2 HG02080.hp2 others(2): Show HG00408.hp2 HG01943.hp2 HG02080.hp2 NA19009.hp1 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0008 a0001c0001t0002 a0001c0002t0008	a0001c0001t0002g0193 a0001c0002t0008g0189 a0001c0002t0008g0194 others(2): Show a0001c0001t0002g0193 a0001c0002t0008g0189 a0001c0002t0008g0194 a0001c0002t0008g0195 a0001c0002t0008g0228	5	244	0.0205	18	c.-18 others(29): Show c.-1820_-1819insTTTTTTTTTTTTTTTTTT	LGR4	ENSG00000205213.14	transcript	ENST00000379214.9	protein_coding		1332		chr11	TogoVar
LGR5_chr12_71434798_71591310	71448084	A A	AACACACA others(11): Show AACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0010 a0001c0002t0010	a0001c0002t0010g0184 a0001c0002t0010g0184	1	200	0.0050	18	c.212 others(35): Show c.212+7804_212+7821dupCACACACACACACACACA	LGR5	ENSG00000139292.13	transcript	ENST00000266674.10	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr12	TogoVar
LGR5_chr12_71434798_71591310	71565422	C C	CTATATAT others(11): Show CTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02723.hp1 HG03098.hp1 others(1): Show HG01496.hp2 HG02723.hp1 HG03098.hp1 HG03831.hp1	a0001 a0011 a0001 a0011	a0001c0002 a0001c0016 a0011c0014 a0001c0002 a0001c0016 a0011c0014	a0001c0002t0001 a0001c0002t0002 a0001c0016t0015 others(1): Show a0001c0002t0001 a0001c0002t0002 a0001c0016t0015 a0011c0014t0011	a0001c0002t0001g0196 a0001c0002t0002g0134 a0001c0016t0015g0056 others(1): Show a0001c0002t0001g0196 a0001c0002t0002g0134 a0001c0016t0015g0056 a0011c0014t0011g0200	4	200	0.0200	18	c.858 others(33): Show c.858-977_858-960dupTATATATATATATATATA	LGR5	ENSG00000139292.13	transcript	ENST00000266674.10	protein_coding	8/17		INFO_REALIGN_3_PRIME	chr12	TogoVar
LGR6_chr1_202188799_202324761	202204653	A A	ACCTCCAA others(11): Show ACCTCCAAACACACACACG	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00741.hp2 HG01256.hp1 others(11): Show HG00408.hp1 HG00741.hp2 HG01256.hp1 HG01361.hp1 HG01891.hp1 HG02155.hp1 HG02486.hp2 HG02559.hp1 HG03225.hp1 HG03225.hp2 HG03516.hp2 HG03688.hp2 NA19068.hp2 NA20129.hp2	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0007 a0008 a0010	a0001c0001 a0002c0002 a0002c0032 others(6): Show a0001c0001 a0002c0002 a0002c0032 a0003c0004 a0003c0031 a0004c0003 a0007c0009 a0008c0010 a0010c0017	a0001c0001t0001 a0002c0002t0002 a0002c0032t0002 others(6): Show a0001c0001t0001 a0002c0002t0002 a0002c0032t0002 a0003c0004t0001 a0003c0031t0001 a0004c0003t0003 a0007c0009t0004 a0008c0010t0001 a0010c0017t0002	a0001c0001t0001g0103 a0001c0001t0001g0138 a0001c0001t0001g0164 others(11): Show a0001c0001t0001g0103 a0001c0001t0001g0138 a0001c0001t0001g0164 a0002c0002t0002g0139 a0002c0002t0002g0163 a0002c0032t0002g0261 a0003c0004t0001g0110 a0003c0004t0001g0165 a0003c0031t0001g0137 a0004c0003t0003g0053 a0007c0009t0004g0018 a0007c0009t0004g0019 a0008c0010t0001g0104 a0010c0017t0002g0166	14	262	0.0534	18	c.212 others(37): Show c.212+10470_212+10487dupGCCTCCAAACACACACAC	LGR6	ENSG00000133067.18	transcript	ENST00000367278.8	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
LGR6_chr1_202188799_202324761	202205481	T T	TCAAACAC others(11): Show TCAAACACACACACACCTC	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0016 a0016	a0016c0019 a0016c0019	a0016c0019t0003 a0016c0019t0003	a0016c0019t0003g0021 a0016c0019t0003g0021	1	262	0.0038	18	c.212 others(37): Show c.212+11296_212+11297insTCCAAACACACACACACC	LGR6	ENSG00000133067.18	transcript	ENST00000367278.8	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
LGR6_chr1_202188799_202324761	202205969	A A	AACACACA others(11): Show AACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0056 a0001c0001t0004g0056	1	262	0.0038	18	c.212 others(37): Show c.212+11771_212+11788dupACACACACACACACACAC	LGR6	ENSG00000133067.18	transcript	ENST00000367278.8	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
LGSN_chr6_63270951_63324983	63281304	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0140 a0001c0001t0013g0140	1	312	0.0032	18	c.331 others(32): Show c.331-102_331-85dupATATATATATATATATAT	LGSN	ENSG00000146166.17	transcript	ENST00000370657.9	protein_coding	3/3			chr6	TogoVar
LHB_chr19_49010980_49022091	49012843	C C	CCACACAC others(11): Show CCACACACACACACACACA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02970.hp1 HG03041.hp2 HG02970.hp1 HG03041.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0003 a0001c0003t0001g0003	2	410	0.0049	18	c.32 others(29): Show c.3207_*3224dupTGTGTGTGTGTGTGTGTG	LHB	ENSG00000104826.15	transcript	ENST00000649238.3	protein_coding		3136		chr19	TogoVar
LHCGR_chr2_48681774_48760724	48717542	C C	CTTATTAT others(11): Show CTTATTATTATTATTATTA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00741.hp2 HG01515.hp1 others(5): Show HG00140.hp1 HG00741.hp2 HG01515.hp1 HG02071.hp1 HG02683.hp1 HG03654.hp1 HG04115.hp1 NA20905.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0006 a0004c0004 a0001c0001 a0001c0006 a0004c0004	a0001c0001t0001 a0001c0006t0001 a0004c0004t0001 a0001c0001t0001 a0001c0006t0001 a0004c0004t0001	a0001c0001t0001g0117 a0001c0001t0001g0154 a0001c0001t0001g0172 others(5): Show a0001c0001t0001g0117 a0001c0001t0001g0154 a0001c0001t0001g0172 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0282 a0001c0006t0001g0151 a0004c0004t0001g0337	8	374	0.0214	18	c.537 others(35): Show c.537-3506_537-3489dupTAATAATAATAATAATAA	LHCGR	ENSG00000138039.15	transcript	ENST00000294954.12	protein_coding	6/10			chr2	TogoVar
LHCGR_chr2_48681774_48760724	48752991	G G	GGGGGTGG others(11): Show GGGGGTGGGGGGGTGGGGT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG01081.hp1 HG01168.hp2 others(11): Show HG00280.hp1 HG01081.hp1 HG01168.hp2 HG01496.hp1 HG02273.hp2 HG02698.hp1 HG03130.hp2 HG03669.hp1 HG03927.hp2 HG04204.hp1 NA18522.hp1 NA18945.hp2 NA20752.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004	a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 others(2): Show a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 a0003c0003t0003 a0004c0004t0001	a0001c0001t0001g0305 a0001c0001t0001g0306 a0001c0001t0001g0309 others(11): Show a0001c0001t0001g0305 a0001c0001t0001g0306 a0001c0001t0001g0309 a0001c0001t0001g0312 a0001c0001t0001g0314 a0002c0002t0001g0315 a0002c0002t0002g0307 a0002c0002t0002g0308 a0002c0002t0002g0310 a0002c0002t0002g0311 a0002c0002t0002g0313 a0003c0003t0003g0343 a0004c0004t0001g0332 a0004c0004t0001g0344	14	374	0.0374	18	c.161 others(35): Show c.161+2519_161+2520insACCCCACCCCCCCACCCC	LHCGR	ENSG00000138039.15	transcript	ENST00000294954.12	protein_coding	1/10			chr2	TogoVar
LHCGR_chr2_48681774_48760724	48752991	G G	GGGGTGGG others(11): Show GGGGTGGGGGGGGTGGGGT	intron_variant intron_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0324 a0002c0002t0002g0324	1	374	0.0027	18	c.161 others(35): Show c.161+2519_161+2520insACCCCACCCCCCCCACCC	LHCGR	ENSG00000138039.15	transcript	ENST00000294954.12	protein_coding	1/10			chr2	TogoVar
LHFPL2_chr5_78480230_78653772	78490746	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	254	0.0039	18	c.431 others(35): Show c.431-1611_431-1594dupTTTTTTTTTTTTTTTTTT	LHFPL2	ENSG00000145685.14	transcript	ENST00000380345.7	protein_coding	4/4			chr5	TogoVar
LHFPL2_chr5_78480230_78653772	78641906	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG02027.hp1 HG02258.hp2 others(2): Show HG00642.hp2 HG02027.hp1 HG02258.hp2 HG02559.hp2 NA19002.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0018 others(1): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0018 a0001c0001t0025	a0001c0001t0001g0158 a0001c0001t0006g0198 a0001c0001t0006g0219 others(2): Show a0001c0001t0001g0158 a0001c0001t0006g0198 a0001c0001t0006g0219 a0001c0001t0018g0003 a0001c0001t0025g0169	5	254	0.0197	18	c.-35 others(37): Show c.-350+6575_-350+6592dupGTGTGTGTGTGTGTGTGT	LHFPL2	ENSG00000145685.14	transcript	ENST00000380345.7	protein_coding	1/4			chr5	TogoVar
LHFPL2_chr5_78480230_78653772	78651583	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01255.hp1 HG01255.hp2 HG01261.hp2 HG01255.hp1 HG01255.hp2 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0013 a0001c0001t0005 a0001c0001t0013	a0001c0001t0005g0068 a0001c0001t0005g0093 a0001c0001t0013g0092 a0001c0001t0005g0068 a0001c0001t0005g0093 a0001c0001t0013g0092	3	254	0.0118	18	c.-34 others(29): Show c.-3452_-3435dupTTTTTTTTTTTTTTTTTT	LHFPL2	ENSG00000145685.14	transcript	ENST00000380345.7	protein_coding		2812		chr5	TogoVar
LHFPL3_chr7_104323603_104913561	104585480	A A	AACACACA others(11): Show AACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01257.hp2 HG01258.hp1 HG01074.hp2 HG01257.hp2 HG01258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0071 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0071	3	86	0.0349	18	c.446 others(39): Show c.446-151170_446-151153dupACACACACACACACACAC	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL3_chr7_104323603_104913561	104614653	C C	CTTCTCTT others(11): Show CTTCTCTTCTCTCCTTCCT	intron_variant intron_variant	MODIFIER	HG02056.hp2 HG03239.hp2 HG02056.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0024 a0001c0001t0004g0027 a0001c0001t0003g0024 a0001c0001t0004g0027	2	86	0.0233	18	c.446 others(39): Show c.446-122021_446-122020insTCTCTTCTCTCCTTCCTT	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL3_chr7_104323603_104913561	104666512	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01168.hp2 HG01168.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0041	1	86	0.0116	18	c.446 others(37): Show c.446-70153_446-70136dupTTTTTTTTTTTTTTTTTT	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL4_chr3_9493361_9558822	9556116	T T	TCACACAC others(11): Show TCACACACACACACACACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp1 HG00438.hp1 HG00597.hp1 others(52): Show HG00408.hp1 HG00438.hp1 HG00597.hp1 HG00597.hp2 HG00621.hp2 HG00735.hp2 HG00738.hp2 HG01257.hp2 HG01258.hp2 HG01934.hp1 HG02074.hp2 HG02135.hp1 HG02280.hp2 HG02559.hp1 HG02615.hp2 HG02896.hp2 HG02897.hp1 HG02970.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03130.hp2 HG03491.hp2 HG04204.hp2 NA18612.hp1 NA18612.hp2 NA18942.hp2 NA18948.hp2 NA18949.hp1 NA18950.hp2 NA18951.hp1 NA18954.hp1 NA18964.hp1 NA18973.hp2 NA18975.hp2 NA18979.hp2 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA18993.hp2 NA18997.hp1 NA18999.hp2 NA19003.hp2 NA19005.hp1 NA19055.hp2 NA19058.hp1 NA19062.hp1 NA19064.hp2 NA19065.hp2 NA19070.hp2 NA19079.hp1 NA19081.hp2 NA19083.hp2 NA19088.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0014 a0001c0001t0037 a0001c0002t0002 a0001c0004t0007	a0001c0001t0001g0186 a0001c0001t0002g0026 a0001c0001t0002g0031 others(51): Show a0001c0001t0001g0186 a0001c0001t0002g0026 a0001c0001t0002g0031 a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0051 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0059 a0001c0001t0002g0061 a0001c0001t0002g0064 a0001c0001t0002g0065 a0001c0001t0002g0082 a0001c0001t0002g0083 a0001c0001t0002g0096 a0001c0001t0002g0100 a0001c0001t0002g0134 a0001c0001t0002g0147 a0001c0001t0003g0003 a0001c0001t0003g0015 a0001c0001t0003g0024 a0001c0001t0003g0030 a0001c0001t0003g0033 a0001c0001t0003g0034 a0001c0001t0003g0041 a0001c0001t0003g0043 a0001c0001t0003g0044 a0001c0001t0003g0045 a0001c0001t0003g0049 a0001c0001t0003g0052 a0001c0001t0003g0053 a0001c0001t0003g0063 a0001c0001t0003g0066 a0001c0001t0003g0067 a0001c0001t0003g0071 a0001c0001t0003g0072 a0001c0001t0003g0077 a0001c0001t0003g0080 a0001c0001t0003g0081 a0001c0001t0003g0090 a0001c0001t0003g0092 a0001c0001t0003g0093 a0001c0001t0006g0032 a0001c0001t0007g0133 a0001c0001t0008g0099 a0001c0001t0008g0101 a0001c0001t0008g0102 a0001c0001t0009g0337 a0001c0001t0010g0103 a0001c0001t0014g0153 a0001c0001t0037g0146 a0001c0002t0002g0109 a0001c0004t0007g0008	55	360	0.1528	18	c.-26 others(29): Show c.-2601_-2600insTGTGTGTGTGTGTGTGTG	LHFPL4	ENSG00000156959.9	transcript	ENST00000287585.8	protein_coding		2295		chr3	TogoVar
LHFPL4_chr3_9493361_9558822	9557473	G G	GAAAGAAA others(11): Show GAAAGAAAGAAAGAAAGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01071.hp1 HG01071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0325 a0001c0001t0016g0325	1	360	0.0028	18	c.-39 others(29): Show c.-3958_-3957insTTCTTTCTTTCTTTCTTT	LHFPL4	ENSG00000156959.9	transcript	ENST00000287585.8	protein_coding		3652		chr3	TogoVar
LHFPL5_chr6_35800352_35829070	35821449	T T	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0181 a0001c0001t0002g0181	1	386	0.0026	18	c.17 others(35): Show c.17-1505_*17-1488dupGTGTGTGTGTGTGTGTGT	LHFPL5	ENSG00000197753.11	transcript	ENST00000360215.3	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr6	TogoVar
LHFPL5_chr6_35800352_35829070	35821481	G G	GTGTGTGT others(11): Show GTGTGTGTGTGTGTGTGTA	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01934.hp1 HG01975.hp1 HG00735.hp2 HG01934.hp1 HG01975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0236 a0001c0001t0003g0245 a0001c0001t0003g0268 a0001c0001t0003g0236 a0001c0001t0003g0245 a0001c0001t0003g0268	3	386	0.0078	18	c.17 others(35): Show c.17-1488_*17-1487insGTGTATGTGTGTGTGTGT	LHFPL5	ENSG00000197753.11	transcript	ENST00000360215.3	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr6	TogoVar
LHFPL6_chr13_39337892_39608193	39345512	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0074 a0001c0001t0002g0074	1	242	0.0041	18	c.485 others(35): Show c.485-1476_485-1459dupTTTTTTTTTTTTTTTTTT	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	3/3			chr13	TogoVar
LHFPL6_chr13_39337892_39608193	39562417	C C	CATATACA others(11): Show CATATACATATATACATAT	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00597.hp2 HG00639.hp1 others(57): Show HG00544.hp2 HG00597.hp2 HG00639.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01081.hp1 HG01123.hp2 HG01167.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01261.hp2 HG01433.hp1 HG01981.hp1 HG02083.hp2 HG02132.hp1 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02451.hp1 HG02486.hp1 HG02559.hp1 HG02622.hp1 HG02630.hp1 HG02717.hp1 HG02717.hp2 HG02738.hp1 HG02809.hp2 HG02895.hp1 HG02897.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03486.hp2 HG03516.hp2 HG03540.hp2 HG04199.hp2 NA18906.hp2 NA18969.hp2 NA18984.hp2 NA19011.hp1 NA19043.hp2 NA19056.hp2 NA19068.hp1 NA19083.hp2 NA19088.hp2 NA19091.hp1 NA20129.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(18): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0001c0001t0023 a0001c0001t0026 a0001c0001t0031 a0001c0002t0001 a0001c0002t0007 a0001c0002t0009 a0001c0002t0011 a0001c0003t0003 a0001c0006t0002	a0001c0001t0001g0054 a0001c0001t0001g0066 a0001c0001t0001g0068 others(57): Show a0001c0001t0001g0054 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0072 a0001c0001t0001g0105 a0001c0001t0001g0110 a0001c0001t0001g0115 a0001c0001t0001g0120 a0001c0001t0001g0140 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0002g0060 a0001c0001t0002g0065 a0001c0001t0002g0067 a0001c0001t0002g0074 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0003g0004 a0001c0001t0003g0058 a0001c0001t0003g0059 a0001c0001t0003g0095 a0001c0001t0003g0097 a0001c0001t0003g0102 a0001c0001t0003g0132 a0001c0001t0003g0232 a0001c0001t0004g0100 a0001c0001t0004g0101 a0001c0001t0004g0187 a0001c0001t0005g0070 a0001c0001t0006g0096 a0001c0001t0006g0106 a0001c0001t0007g0126 a0001c0001t0007g0139 a0001c0001t0007g0186 a0001c0001t0007g0233 a0001c0001t0008g0229 a0001c0001t0010g0039 a0001c0001t0010g0071 a0001c0001t0010g0118 a0001c0001t0010g0220 a0001c0001t0011g0223 a0001c0001t0013g0094 a0001c0001t0014g0141 a0001c0001t0023g0061 a0001c0001t0026g0177 a0001c0001t0031g0237 a0001c0002t0001g0009 a0001c0002t0001g0012 a0001c0002t0007g0010 a0001c0002t0009g0007 a0001c0002t0011g0011 a0001c0002t0011g0019 a0001c0003t0003g0133 a0001c0006t0002g0228	60	242	0.2479	18	c.385 others(37): Show c.385+38397_385+38414dupATATGTATATATGTATAT	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	2/3			chr13	TogoVar
LHFPL6_chr13_39337892_39608193	39562443	T T	TACATATA others(11): Show TACATATATACATATATAC	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0091 a0001c0001t0002g0091	1	242	0.0041	18	c.385 others(37): Show c.385+38388_385+38389insGTATATATGTATATATGT	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	2/3			chr13	TogoVar
LHPP_chr10_124456823_124619141	124457265	T T	TTCTCTCT others(11): Show TTCTCTCTCTCTCTCCCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0008 a0003c0003t0008	a0003c0003t0008g0008 a0003c0003t0008g0008	1	260	0.0039	18	c.-45 others(29): Show c.-4598_-4597insTCTCTCTCTCTCTCCCTC	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding		4557		chr10	TogoVar
LHPP_chr10_124456823_124619141	124457275	T T	TTCTCTCT others(11): Show TTCTCTCTCTCTCTCCCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03490.hp2 NA18942.hp2 HG03490.hp2 NA18942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0175 a0001c0001t0001g0189 a0001c0001t0001g0175 a0001c0001t0001g0189	2	260	0.0077	18	c.-45 others(29): Show c.-4588_-4587insTCTCTCTCTCTCTCCCTC	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding		4547		chr10	TogoVar
LHPP_chr10_124456823_124619141	124471436	A A	ATTATATA others(11): Show ATTATATATATTTATATAT	intron_variant intron_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0207 a0001c0001t0003g0207	1	260	0.0039	18	c.125 others(35): Show c.125+9469_125+9486dupTATATATATTTATATATT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124471455	T T	TATATATA others(11): Show TATATATATTTATATATTA	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0007 a0003c0004t0007	a0003c0004t0007g0006 a0003c0004t0007g0006	1	260	0.0039	18	c.125 others(35): Show c.125+9468_125+9469insATATATATTTATATATTA	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	1/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124475030	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01258.hp2 HG04115.hp2 HG01257.hp1 HG01258.hp2 HG04115.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0135 a0001c0001t0001g0161 a0001c0001t0001g0203 a0001c0001t0001g0135 a0001c0001t0001g0161 a0001c0001t0001g0203	3	260	0.0115	18	c.126 others(35): Show c.126-9099_126-9098insTTTTTTTTTTTTTTTTTT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507062	A A	AGGCAGGA others(11): Show AGGCAGGATTTCAGGTCGG	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02559.hp1 HG01891.hp2 HG02559.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0005 a0003c0003t0005	a0003c0003t0005g0255 a0003c0003t0005g0256 a0003c0003t0005g0255 a0003c0003t0005g0256	2	260	0.0077	18	c.624 others(35): Show c.624+8936_624+8937insCAGGATTTCAGGTCGGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124572647	T T	TAAGAAAG others(11): Show TAAGAAAGGCAAGAAAGGA	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp1 HG00642.hp1 others(73): Show HG00280.hp2 HG00323.hp1 HG00642.hp1 HG00738.hp1 HG01070.hp2 HG01074.hp2 HG01167.hp1 HG01167.hp2 HG01169.hp2 HG01192.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp2 HG01433.hp1 HG01496.hp2 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01981.hp2 HG02015.hp2 HG02055.hp1 HG02055.hp2 HG02129.hp1 HG02132.hp2 HG02135.hp2 HG02145.hp1 HG02258.hp1 HG02258.hp2 HG02300.hp1 HG02451.hp2 HG02559.hp2 HG02683.hp1 HG02683.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG03041.hp1 HG03041.hp2 HG03139.hp1 HG03239.hp1 HG03688.hp1 HG03688.hp2 HG03704.hp1 HG03927.hp1 HG03927.hp2 HG04115.hp2 HG04184.hp2 HG04199.hp2 HG04228.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp2 NA18951.hp2 NA18961.hp1 NA18961.hp2 NA18962.hp1 NA18962.hp2 NA18965.hp1 NA18969.hp1 NA18971.hp2 NA18980.hp1 NA19000.hp2 NA19004.hp2 NA19011.hp2 NA19043.hp2 NA19065.hp2 NA19077.hp2 NA19090.hp1 NA19240.hp1 NA20752.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0001c0001t0003 a0001c0001t0011 others(5): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0002c0002t0001 a0003c0003t0002 a0003c0003t0009	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0015 others(73): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0033 a0001c0001t0001g0047 a0001c0001t0001g0051 a0001c0001t0001g0061 a0001c0001t0001g0063 a0001c0001t0001g0068 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0091 a0001c0001t0001g0095 a0001c0001t0001g0099 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0109 a0001c0001t0001g0111 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0131 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0150 a0001c0001t0001g0155 a0001c0001t0001g0158 a0001c0001t0001g0160 a0001c0001t0001g0166 a0001c0001t0001g0174 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0196 a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0220 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0243 a0001c0001t0001g0244 a0001c0001t0001g0253 a0001c0001t0003g0171 a0001c0001t0003g0177 a0001c0001t0003g0207 a0001c0001t0011g0093 a0001c0001t0013g0235 a0001c0001t0014g0096 a0002c0002t0001g0014 a0002c0002t0001g0031 a0002c0002t0001g0078 a0002c0002t0001g0121 a0002c0002t0001g0122 a0002c0002t0001g0198 a0002c0002t0001g0251 a0003c0003t0002g0010 a0003c0003t0002g0089 a0003c0003t0002g0260 a0003c0003t0009g0257	76	260	0.2923	18	c.717 others(37): Show c.717-40609_717-40608insCAAGAAAGGAAAGAAAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124572647	T T	TAAGAAAG others(11): Show TAAGAAAGGCAAGAAAGGC	intron_variant intron_variant	MODIFIER	NA18947.hp1 NA18947.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0041	1	260	0.0039	18	c.717 others(37): Show c.717-40609_717-40608insCAAGAAAGGCAAGAAAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHX4_chr1_180225264_180283984	180234169	T T	TTATATAT others(11): Show TTATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18987.hp2 NA18987.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0325 a0001c0001t0002g0325	1	402	0.0025	18	c.76+ others(33): Show c.76+3599_76+3616dupTATATATATATATATATA	LHX4	ENSG00000121454.6	transcript	ENST00000263726.4	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
LHX4_chr1_180225264_180283984	180264378	A A	AACACACA others(11): Show AACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG03669.hp1 HG01167.hp1 HG03669.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0009 a0001c0001t0008 a0001c0001t0009	a0001c0001t0008g0139 a0001c0001t0009g0266 a0001c0001t0008g0139 a0001c0001t0009g0266	2	402	0.0050	18	c.249 others(35): Show c.249-1996_249-1979dupCACACACACACACACACA	LHX4	ENSG00000121454.6	transcript	ENST00000263726.4	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
LHX5_chr12_113457033_113476871	113461038	C C	CTCTTTCT others(11): Show CTCTTTCTTTCTTTCTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0023 a0001c0001t0001g0023	1	396	0.0025	18	c.21 others(29): Show c.2151_*2152insAAGAGAAAGAAAGAAAGA	LHX5	ENSG00000089116.4	transcript	ENST00000261731.4	protein_coding		994		chr12	TogoVar
LIAS_chr4_39454056_39484506	39484270	A A	AACACACA others(11): Show AACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0143 a0001c0001t0018g0143	1	424	0.0024	18	c.71 others(29): Show c.7155_*7156insACACACACACACACACAC	LIAS	ENSG00000121897.15	transcript	ENST00000640888.2	protein_coding		4765		chr4	TogoVar
LIAT1_chr17_405325_419666	418281	A A	AGAAAGGG others(11): Show AGAAAGGGAGGAAGGAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0038 a0038	a0038c0030 a0038c0030	a0038c0030t0003 a0038c0030t0003	a0038c0030t0003g0002 a0038c0030t0003g0002	1	434	0.0023	18	c.41 others(29): Show c.4166_*4167insGAAAGGGAGGAAGGAAAG	LIAT1	ENSG00000187624.9	transcript	ENST00000360127.7	protein_coding		3616		chr17	TogoVar
LIFR_chr5_38469668_38561646	38517856	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02080.hp1 NA19063.hp1 HG02080.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0187 a0001c0001t0001g0201 a0001c0001t0001g0187 a0001c0001t0001g0201	2	374	0.0054	18	c.561 others(35): Show c.561+5545_561+5562dupTTTTTTTTTTTTTTTTTT	LIFR	ENSG00000113594.10	transcript	ENST00000453190.7	protein_coding	5/19			chr5	TogoVar
LIFR_chr5_38469668_38561646	38527947	T T	TGCCCCCA others(11): Show TGCCCCCATCAACTACCCA	intron_variant intron_variant	MODIFIER	NA18747.hp2 NA18747.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0157 a0002c0002t0003g0157	1	374	0.0027	18	c.258 others(33): Show c.258-654_258-653insTGGGTAGTTGATGGGGGC	LIFR	ENSG00000113594.10	transcript	ENST00000453190.7	protein_coding	3/19			chr5	TogoVar
LIFR_chr5_38469668_38561646	38553622	C C	CTATATAT others(11): Show CTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0073 a0001c0001t0006g0073	1	374	0.0027	18	c.-20 others(35): Show c.-20+2694_-20+2711dupTATATATATATATATATA	LIFR	ENSG00000113594.10	transcript	ENST00000453190.7	protein_coding	1/19			chr5	TogoVar

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