Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LIG1_chr19_48110445_48175344	48142442	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00423.hp2 HG00597.hp2 others(37): Show HG00099.hp2 HG00423.hp2 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG01074.hp2 HG01167.hp2 HG01258.hp2 HG01891.hp1 HG01975.hp2 HG02015.hp2 HG02056.hp1 HG02129.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02897.hp1 HG03041.hp1 HG03654.hp1 HG03834.hp2 HG04228.hp1 NA18944.hp1 NA18948.hp1 NA18961.hp1 NA18966.hp2 NA18967.hp2 NA18969.hp1 NA18980.hp1 NA18994.hp2 NA18999.hp2 NA19002.hp1 NA19005.hp2 NA19012.hp2 NA19065.hp1 NA19074.hp2 NA19083.hp2 NA19091.hp1 NA20752.hp1 NA20752.hp2 homoSapiens_chm13v2.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0001c0002 a0008c0012 a0001c0001 a0001c0002 a0008c0012	a0001c0001t0001 a0001c0002t0001 a0008c0012t0001 a0001c0001t0001 a0001c0002t0001 a0008c0012t0001	a0001c0001t0001g0095 a0001c0001t0001g0221 a0001c0001t0001g0222 others(37): Show a0001c0001t0001g0095 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0001g0223 a0001c0001t0001g0225 a0001c0001t0001g0226 a0001c0001t0001g0234 a0001c0001t0001g0237 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0248 a0001c0001t0001g0251 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0259 a0001c0001t0001g0262 a0001c0001t0001g0272 a0001c0001t0001g0274 a0001c0001t0001g0277 a0001c0001t0001g0278 a0001c0001t0001g0280 a0001c0001t0001g0284 a0001c0001t0001g0288 a0001c0001t0001g0290 a0001c0001t0001g0296 a0001c0001t0001g0297 a0001c0001t0001g0298 a0001c0001t0001g0304 a0001c0001t0001g0306 a0001c0001t0001g0308 a0001c0001t0001g0309 a0001c0001t0001g0310 a0001c0001t0001g0315 a0001c0001t0001g0317 a0001c0001t0001g0319 a0001c0002t0001g0169 a0001c0002t0001g0170 a0001c0002t0001g0171 a0008c0012t0001g0244	40	330	0.1212	18	c.914 others(35): Show c.914+1100_914+1101insTTTTTTTTTTTTTTTTTT	LIG1	ENSG00000105486.15	transcript	ENST00000263274.12	protein_coding	11/27			chr19	TogoVar
LIG1_chr19_48110445_48175344	48142444	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02723.hp1 HG02818.hp2 others(4): Show HG02109.hp1 HG02723.hp1 HG02818.hp2 NA19043.hp1 NA19043.hp2 NA20129.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0007 a0001c0001 a0001c0004 a0001c0007	a0001c0001t0004 a0001c0004t0004 a0001c0007t0001 a0001c0001t0004 a0001c0004t0004 a0001c0007t0001	a0001c0001t0004g0322 a0001c0001t0004g0323 a0001c0001t0004g0324 others(4): Show a0001c0001t0004g0322 a0001c0001t0004g0323 a0001c0001t0004g0324 a0001c0004t0004g0327 a0001c0007t0001g0136 a0001c0007t0001g0137 a0001c0007t0001g0162	7	330	0.0212	18	c.914 others(35): Show c.914+1098_914+1099insGTTTTTTTTTTTTTTTTT	LIG1	ENSG00000105486.15	transcript	ENST00000263274.12	protein_coding	11/27			chr19	TogoVar
LIG1_chr19_48110445_48175344	48142445	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0134 a0001c0001t0001g0134	1	330	0.0030	18	c.914 others(35): Show c.914+1097_914+1098insGTTTTTTTTTTTTTTTTT	LIG1	ENSG00000105486.15	transcript	ENST00000263274.12	protein_coding	11/27			chr19	TogoVar
LIG1_chr19_48110445_48175344	48142457	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG02698.hp2 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0266 a0001c0001t0001g0266	1	330	0.0030	18	c.914 others(35): Show c.914+1085_914+1086insGTTTTTTTTTTTTTTTTT	LIG1	ENSG00000105486.15	transcript	ENST00000263274.12	protein_coding	11/27			chr19	TogoVar
LIG1_chr19_48110445_48175344	48153820	T T	TCACACAC others(11): Show TCACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG01167.hp2 HG02129.hp1 others(18): Show HG00597.hp2 HG01167.hp2 HG02129.hp1 HG02738.hp2 HG02809.hp1 HG03834.hp1 HG04115.hp1 NA18944.hp1 NA18947.hp2 NA18961.hp1 NA18965.hp2 NA18980.hp1 NA18983.hp1 NA18985.hp2 NA18990.hp1 NA18994.hp2 NA18999.hp2 NA19011.hp2 NA19056.hp2 NA19058.hp1 NA19087.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0004 a0005c0011 a0001c0001 a0001c0004 a0005c0011	a0001c0001t0001 a0001c0004t0003 a0005c0011t0003 a0001c0001t0001 a0001c0004t0003 a0005c0011t0003	a0001c0001t0001g0221 a0001c0001t0001g0241 a0001c0001t0001g0242 others(18): Show a0001c0001t0001g0221 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0269 a0001c0001t0001g0270 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0278 a0001c0001t0001g0279 a0001c0001t0001g0284 a0001c0001t0001g0285 a0001c0001t0001g0287 a0001c0001t0001g0291 a0001c0001t0001g0302 a0001c0001t0001g0304 a0001c0001t0001g0308 a0001c0001t0001g0315 a0001c0004t0003g0208 a0005c0011t0003g0201	21	330	0.0636	18	c.466 others(31): Show c.466+34_466+51dupTGTGTGTGTGTGTGTGTG	LIG1	ENSG00000105486.15	transcript	ENST00000263274.12	protein_coding	6/27			chr19	TogoVar
LIG4_chr13_108202442_108220536	108207175	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01255.hp1 HG01891.hp2 HG02258.hp1 others(5): Show HG01255.hp1 HG01891.hp2 HG02258.hp1 HG02280.hp1 HG02630.hp2 HG02809.hp1 HG03492.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0015 a0001c0001t0001 a0001c0001t0003 a0001c0001t0015	a0001c0001t0001g0001 a0001c0001t0001g0028 a0001c0001t0001g0085 others(4): Show a0001c0001t0001g0001 a0001c0001t0001g0028 a0001c0001t0001g0085 a0001c0001t0003g0004 a0001c0001t0003g0108 a0001c0001t0003g0180 a0001c0001t0015g0082	8	374	0.0214	18	c.13 others(29): Show c.1357_*1358insTTTTTTTTTTTTTTTTTT	LIG4	ENSG00000174405.15	transcript	ENST00000442234.6	protein_coding		266		chr13	TogoVar
LILRA5_chr19_54302070_54318166	54304741	T T	TTCTTTCT others(11): Show TTCTTTCTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01978.hp1 HG01978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	409	0.0024	18	c.26 others(29): Show c.2671_*2672insGAAAGAAAGAAAGAAAGA	LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding		2328		chr19	TogoVar
LILRA5_chr19_54302070_54318166	54304741	T T	TTTTTTCT others(11): Show TTTTTTCTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01257.hp1 HG02027.hp1 HG02135.hp2 others(2): Show HG01257.hp1 HG02027.hp1 HG02135.hp2 HG02145.hp1 HG03688.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0135 a0001c0001t0005g0002 a0001c0001t0001g0135 a0001c0001t0005g0002	5	409	0.0122	18	c.26 others(29): Show c.2671_*2672insGAAAGAAAGAAAGAAAAA	LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding		2328		chr19	TogoVar
LILRB5_chr19_54244421_54262273	54258277	T T	TATATATA others(11): Show TATATATATATATATACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0007 a0007	a0007c0011 a0007c0011	a0007c0011t0012 a0007c0011t0012	a0007c0011t0012g0165 a0007c0011t0012g0165	1	474	0.0021	18	c.-10 others(29): Show c.-1085_-1084insGTGTATATATATATATAT	LILRB5	ENSG00000105609.17	transcript	ENST00000449561.3	protein_coding		1005		chr19	TogoVar
LILRB5_chr19_54244421_54262273	54258277	T T	TATATATA others(11): Show TATATATATATATATATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03927.hp1 HG04228.hp1 HG03927.hp1 HG04228.hp1	a0006 a0006	a0006c0010 a0006c0010	a0006c0010t0013 a0006c0010t0051 a0006c0010t0013 a0006c0010t0051	a0006c0010t0013g0032 a0006c0010t0051g0074 a0006c0010t0013g0032 a0006c0010t0051g0074	2	474	0.0042	18	c.-10 others(29): Show c.-1085_-1084insGTATATATATATATATAT	LILRB5	ENSG00000105609.17	transcript	ENST00000449561.3	protein_coding		1005		chr19	TogoVar
LIMA1_chr12_50170788_50288520	50175363	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02559.hp1 HG03209.hp1 HG03471.hp2 HG02559.hp1 HG03209.hp1 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183	3	294	0.0102	18	c.17 others(29): Show c.1700_*1701insTTTTTTTTTTTTTTTTTT	LIMA1	ENSG00000050405.14	transcript	ENST00000341247.9	protein_coding		424		chr12	TogoVar
LIMA1_chr12_50170788_50288520	50214024	C C	CCACACAC others(11): Show CCACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0185 a0001c0001t0001g0185	1	294	0.0034	18	c.631 others(35): Show c.631-7974_631-7957dupTGTGTGTGTGTGTGTGTG	LIMA1	ENSG00000050405.14	transcript	ENST00000341247.9	protein_coding	4/10			chr12	TogoVar
LIMA1_chr12_50170788_50288520	50214051	C C	CACACACA others(11): Show CACACACACACACACACAT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00438.hp2 HG00544.hp1 others(66): Show HG00099.hp2 HG00438.hp2 HG00544.hp1 HG00673.hp2 HG00733.hp1 HG00735.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp2 HG01192.hp2 HG01255.hp1 HG01256.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp2 HG01433.hp2 HG01496.hp2 HG01515.hp1 HG01517.hp2 HG01928.hp2 HG01975.hp1 HG01978.hp2 HG02129.hp2 HG02132.hp2 HG02145.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02602.hp1 HG02615.hp1 HG02683.hp1 HG02818.hp2 HG02965.hp1 HG02970.hp2 HG03017.hp1 HG03017.hp2 HG03098.hp1 HG03209.hp2 HG03225.hp2 HG03239.hp2 HG03453.hp1 HG03490.hp1 HG03491.hp1 HG03579.hp1 HG03927.hp2 HG04115.hp2 HG04228.hp1 NA18942.hp2 NA18943.hp1 NA18945.hp1 NA18954.hp2 NA18959.hp1 NA18964.hp1 NA18965.hp2 NA18979.hp1 NA18981.hp1 NA18986.hp2 NA18992.hp1 NA18994.hp2 NA19000.hp2 NA19004.hp2 NA19058.hp1 NA19084.hp1 NA20752.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0010	a0001c0001t0001g0014 a0001c0001t0001g0020 a0001c0001t0001g0022 others(66): Show a0001c0001t0001g0014 a0001c0001t0001g0020 a0001c0001t0001g0022 a0001c0001t0001g0060 a0001c0001t0001g0072 a0001c0001t0001g0100 a0001c0001t0002g0006 a0001c0001t0002g0008 a0001c0001t0002g0009 a0001c0001t0002g0010 a0001c0001t0002g0012 a0001c0001t0002g0013 a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0017 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0033 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0043 a0001c0001t0002g0045 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0052 a0001c0001t0002g0055 a0001c0001t0002g0057 a0001c0001t0002g0061 a0001c0001t0002g0066 a0001c0001t0002g0073 a0001c0001t0002g0093 a0001c0001t0002g0094 a0001c0001t0002g0099 a0001c0001t0002g0176 a0001c0001t0003g0042 a0001c0001t0003g0056 a0001c0001t0003g0058 a0001c0001t0003g0063 a0001c0001t0003g0065 a0001c0001t0003g0068 a0001c0001t0003g0069 a0001c0001t0003g0077 a0001c0001t0003g0081 a0001c0001t0003g0082 a0001c0001t0003g0083 a0001c0001t0003g0084 a0001c0001t0003g0087 a0001c0001t0003g0088 a0001c0001t0003g0090 a0001c0001t0003g0092 a0001c0001t0003g0096 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0101 a0001c0001t0003g0184 a0001c0001t0005g0031 a0001c0001t0010g0091	69	294	0.2347	18	c.630 others(35): Show c.630+7969_630+7970insATGTGTGTGTGTGTGTGT	LIMA1	ENSG00000050405.14	transcript	ENST00000341247.9	protein_coding	4/10			chr12	TogoVar
LIMA1_chr12_50170788_50288520	50247604	A A	AATTATTA others(11): Show AATTATTATTATTATTATT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00408.hp1 HG00438.hp2 others(27): Show HG00099.hp2 HG00408.hp1 HG00438.hp2 HG00544.hp1 HG00673.hp2 HG01109.hp1 HG01123.hp2 HG01261.hp1 HG01361.hp2 HG01975.hp1 HG02071.hp2 HG02109.hp2 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02647.hp1 HG02922.hp2 HG02976.hp2 HG03098.hp1 HG03130.hp1 HG03130.hp2 HG03471.hp2 HG03491.hp1 HG04115.hp2 NA18945.hp1 NA18965.hp2 NA19000.hp2 NA19084.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0004t0003	a0001c0001t0001g0044 a0001c0001t0001g0060 a0001c0001t0001g0072 others(27): Show a0001c0001t0001g0044 a0001c0001t0001g0060 a0001c0001t0001g0072 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0177 a0001c0001t0001g0182 a0001c0001t0001g0185 a0001c0001t0002g0010 a0001c0001t0002g0012 a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0027 a0001c0001t0002g0033 a0001c0001t0002g0037 a0001c0001t0002g0041 a0001c0001t0002g0052 a0001c0001t0002g0179 a0001c0001t0003g0042 a0001c0001t0003g0063 a0001c0001t0003g0068 a0001c0001t0003g0080 a0001c0001t0003g0087 a0001c0001t0003g0088 a0001c0001t0003g0089 a0001c0001t0003g0101 a0001c0001t0003g0112 a0001c0001t0005g0110 a0001c0001t0005g0113 a0001c0004t0003g0085	30	294	0.1020	18	c.119 others(35): Show c.119+1011_119+1028dupAATAATAATAATAATAAT	LIMA1	ENSG00000050405.14	transcript	ENST00000341247.9	protein_coding	2/10			chr12	TogoVar
LIMCH1_chr4_41533157_41705044	41557546	C C	CTGTGTGT others(11): Show CTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01255.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0130 a0001c0001t0013g0130	1	154	0.0065	18	c.-24 others(39): Show c.-241+19208_-241+19225dupGTGTGTGTGTGTGTGTGT	LIMCH1	ENSG00000064042.18	transcript	ENST00000503057.6	protein_coding	1/31		INFO_REALIGN_3_PRIME	chr4	TogoVar
LIMCH1_chr4_41533157_41705044	41581805	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0009	1	154	0.0065	18	c.-24 others(39): Show c.-240-17107_-240-17090dupAAAAAAAAAAAAAAAAAA	LIMCH1	ENSG00000064042.18	transcript	ENST00000503057.6	protein_coding	1/31		INFO_REALIGN_3_PRIME	chr4	TogoVar
LIMCH1_chr4_41533157_41705044	41596048	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG02486.hp2 HG02922.hp2 others(1): Show HG01255.hp2 HG02486.hp2 HG02922.hp2 HG03579.hp2	a0001 a0006 a0007 a0001 a0006 a0007	a0001c0001 a0006c0008 a0007c0007 a0001c0001 a0006c0008 a0007c0007	a0001c0001t0013 a0006c0008t0011 a0007c0007t0012 a0001c0001t0013 a0006c0008t0011 a0007c0007t0012	a0001c0001t0013g0130 a0006c0008t0011g0125 a0007c0007t0012g0150 others(1): Show a0001c0001t0013g0130 a0006c0008t0011g0125 a0007c0007t0012g0150 a0007c0007t0012g0151	4	154	0.0260	18	c.-24 others(37): Show c.-240-2859_-240-2858insAAAAAAAAAAAAAAAAAA	LIMCH1	ENSG00000064042.18	transcript	ENST00000503057.6	protein_coding	1/31		INFO_REALIGN_3_PRIME	chr4	TogoVar
LIMD1_chr3_45589751_45691341	45663868	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00735.hp1 HG01243.hp1 others(15): Show HG00423.hp1 HG00735.hp1 HG01243.hp1 HG01257.hp2 HG01361.hp2 HG02056.hp1 HG02132.hp1 HG02523.hp1 HG02735.hp2 HG02965.hp1 HG02965.hp2 HG03831.hp2 NA18945.hp1 NA18947.hp2 NA18952.hp2 NA19054.hp1 NA19090.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0010 a0001c0001t0019 a0001c0001t0032 others(13): Show a0001c0001t0010 a0001c0001t0019 a0001c0001t0032 a0001c0001t0038 a0001c0001t0044 a0001c0001t0058 a0001c0001t0116 a0001c0001t0134 a0001c0001t0143 a0001c0001t0151 a0001c0001t0152 a0001c0001t0153 a0001c0001t0170 a0001c0002t0027 a0001c0002t0101 a0001c0002t0117	a0001c0001t0010g0050 a0001c0001t0019g0284 a0001c0001t0032g0144 others(15): Show a0001c0001t0010g0050 a0001c0001t0019g0284 a0001c0001t0032g0144 a0001c0001t0038g0264 a0001c0001t0038g0286 a0001c0001t0044g0098 a0001c0001t0044g0243 a0001c0001t0058g0147 a0001c0001t0116g0146 a0001c0001t0134g0277 a0001c0001t0143g0265 a0001c0001t0151g0283 a0001c0001t0152g0049 a0001c0001t0153g0270 a0001c0001t0170g0282 a0001c0002t0027g0336 a0001c0002t0101g0300 a0001c0002t0117g0337	18	358	0.0503	18	c.151 others(37): Show c.1511-1779_1511-1762dupTTTTTTTTTTTTTTTTTT	LIMD1	ENSG00000144791.10	transcript	ENST00000273317.5	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
LIMD1_chr3_45589751_45691341	45686636	A A	AATATATA others(11): Show AATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01123.hp2 HG01928.hp2 HG01934.hp1 others(1): Show HG01123.hp2 HG01928.hp2 HG01934.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0043 a0001c0001t0158 others(1): Show a0001c0001t0014 a0001c0001t0043 a0001c0001t0158 a0001c0001t0194	a0001c0001t0014g0038 a0001c0001t0043g0040 a0001c0001t0158g0037 others(1): Show a0001c0001t0014g0038 a0001c0001t0043g0040 a0001c0001t0158g0037 a0001c0001t0194g0246	4	358	0.0112	18	c.95 others(29): Show c.9577_*9578insATATATATATATATATAT	LIMD1	ENSG00000144791.10	transcript	ENST00000273317.5	protein_coding		296		chr3	TogoVar
LIMD1_chr3_45589751_45691341	45686663	A A	ATATATAT others(11): Show ATATATATATATATATATT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01168.hp1 HG01169.hp2 HG01168.hp1 HG01169.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0031 a0001c0002t0031	a0001c0002t0031g0332 a0001c0002t0031g0333 a0001c0002t0031g0332 a0001c0002t0031g0333	2	358	0.0056	18	c.96 others(29): Show c.9604_*9605insTATATATATATATATATT	LIMD1	ENSG00000144791.10	transcript	ENST00000273317.5	protein_coding		323		chr3	TogoVar
LIMD1_chr3_45589751_45691341	45686663	A A	ATATATAT others(11): Show ATATATATATATATATTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01943.hp2 HG01943.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0059 a0001c0002t0059	a0001c0002t0059g0327 a0001c0002t0059g0327	1	358	0.0028	18	c.96 others(29): Show c.9604_*9605insTATATATATATATATTTT	LIMD1	ENSG00000144791.10	transcript	ENST00000273317.5	protein_coding		323		chr3	TogoVar
LIMD1_chr3_45589751_45691341	45686663	A A	ATATATAT others(11): Show ATATATATATTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0077 a0001c0002t0077	a0001c0002t0077g0010 a0001c0002t0077g0010	1	358	0.0028	18	c.96 others(29): Show c.9604_*9605insTATATATATTTTTTTTTT	LIMD1	ENSG00000144791.10	transcript	ENST00000273317.5	protein_coding		323		chr3	TogoVar
LIMD1_chr3_45589751_45691341	45686663	A A	ATATATAT others(11): Show ATATATATTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0192 a0001c0001t0192	a0001c0001t0192g0290 a0001c0001t0192g0290	1	358	0.0028	18	c.96 others(29): Show c.9604_*9605insTATATATTTTTTTTTTTT	LIMD1	ENSG00000144791.10	transcript	ENST00000273317.5	protein_coding		323		chr3	TogoVar
LIME1_chr20_63731664_63744103	63732462	T T	TGCACGTG others(11): Show TGCACGTGTGTGGGTGAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02300.hp1 NA18971.hp2 HG02300.hp1 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0002	2	394	0.0051	18	c.-42 others(29): Show c.-4268_-4267insGCACGTGTGTGGGTGAGG	LIME1	ENSG00000203896.10	transcript	ENST00000309546.8	protein_coding		4201		chr20	TogoVar
LIMK2_chr22_31207298_31285080	31246179	G G	GCACACAC others(11): Show GCACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG02258.hp2 HG01099.hp1 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0282 a0001c0001t0001g0287 a0001c0001t0001g0282 a0001c0001t0001g0287	2	358	0.0056	18	c.117 others(37): Show c.117-12109_117-12108insACACACACACACACACAC	LIMK2	ENSG00000182541.18	transcript	ENST00000331728.9	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr22	TogoVar
LIMK2_chr22_31207298_31285080	31246183	G G	GCACACAC others(11): Show GCACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG01106.hp1 HG02056.hp1 others(4): Show HG00280.hp1 HG01106.hp1 HG02056.hp1 HG02698.hp2 HG03654.hp1 HG03831.hp2 NA20752.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0005 a0001c0001 a0004c0005	a0001c0001t0001 a0004c0005t0001 a0001c0001t0001 a0004c0005t0001	a0001c0001t0001g0280 a0001c0001t0001g0293 a0001c0001t0001g0301 others(4): Show a0001c0001t0001g0280 a0001c0001t0001g0293 a0001c0001t0001g0301 a0001c0001t0001g0302 a0001c0001t0001g0309 a0001c0001t0001g0322 a0004c0005t0001g0284	7	358	0.0196	18	c.117 others(37): Show c.117-12092_117-12075dupACACACACACACACACAC	LIMK2	ENSG00000182541.18	transcript	ENST00000331728.9	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr22	TogoVar
LIMK2_chr22_31207298_31285080	31247379	C C	CACCCCAG others(11): Show CACCCCAGGCCTTTTGGCA	intron_variant intron_variant	MODIFIER	NA18963.hp2 NA18963.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0055 a0001c0001t0002g0055	1	358	0.0028	18	c.117 others(37): Show c.117-10898_117-10897insGGCAACCCCAGGCCTTTT	LIMK2	ENSG00000182541.18	transcript	ENST00000331728.9	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr22	TogoVar
LIMS1_chr2_108529470_108692246	108552585	G G	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0018 a0002c0003t0018	a0002c0003t0018g0005 a0002c0003t0018g0005	1	246	0.0041	18	c.32+ others(35): Show c.32+18002_32+18019dupGTGTGTGTGTGTGTGTGT	LIMS1	ENSG00000169756.17	transcript	ENST00000544547.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIMS1_chr2_108529470_108692246	108612010	A A	AAAATATA others(11): Show AAAATATATATACATATAT	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG03041.hp2 HG02572.hp1 HG03041.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0018 a0002c0003t0026 a0002c0003t0018 a0002c0003t0026	a0002c0003t0018g0005 a0002c0003t0026g0219 a0002c0003t0018g0005 a0002c0003t0026g0219	2	246	0.0081	18	c.33- others(35): Show c.33-47595_33-47594insAAATATATATACATATAT	LIMS1	ENSG00000169756.17	transcript	ENST00000544547.6	protein_coding	1/9			chr2	TogoVar
LIMS2_chr2_127633426_127680530	127648948	A A	AGAGGAGG others(11): Show AGAGGAGGGGAGGGGAGGG	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG01358.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0264 a0001c0002t0001g0264	1	348	0.0029	18	c.359 others(35): Show c.359+5475_359+5476insCCCTCCCCTCCCCTCCTC	LIMS2	ENSG00000072163.20	transcript	ENST00000355119.9	protein_coding	4/9			chr2	TogoVar
LIMS2_chr2_127633426_127680530	127668668	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0299 a0001c0001t0002g0299	1	348	0.0029	18	c.11+ others(33): Show c.11+6328_11+6345dupTTTTTTTTTTTTTTTTTT	LIMS2	ENSG00000072163.20	transcript	ENST00000355119.9	protein_coding	1/9			chr2	TogoVar
LIN28B_chr6_104952107_105088332	105053714	C C	CATGTGTG others(11): Show CATGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG03516.hp2 HG02647.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0006 a0001c0002t0007 a0001c0001t0006 a0001c0002t0007	a0001c0001t0006g0172 a0001c0002t0007g0005 a0001c0001t0006g0172 a0001c0002t0007g0005	2	278	0.0072	18	c.384 others(37): Show c.384-24700_384-24699insATGTGTGTGTGTGTGTGT	LIN28B	ENSG00000187772.8	transcript	ENST00000345080.5	protein_coding	3/3			chr6	TogoVar
LIN28B_chr6_104952107_105088332	105070592	C C	CCACACAC others(11): Show CCACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG02145.hp2 HG02257.hp1 others(12): Show HG01167.hp1 HG02145.hp2 HG02257.hp1 HG02559.hp1 HG02647.hp2 HG02965.hp1 HG03098.hp2 HG03139.hp1 HG03239.hp1 HG03492.hp2 HG03704.hp2 NA18948.hp2 NA19240.hp1 NA19240.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(3): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008	a0001c0001t0001g0026 a0001c0001t0001g0098 a0001c0001t0001g0140 others(12): Show a0001c0001t0001g0026 a0001c0001t0001g0098 a0001c0001t0001g0140 a0001c0001t0001g0165 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0004g0029 a0001c0001t0004g0052 a0001c0001t0004g0245 a0001c0001t0005g0038 a0001c0001t0006g0172 a0001c0001t0006g0174 a0001c0001t0006g0175 a0001c0001t0007g0255 a0001c0001t0008g0132	15	278	0.0540	18	c.384 others(35): Show c.384-7790_384-7773dupACACACACACACACACAC	LIN28B	ENSG00000187772.8	transcript	ENST00000345080.5	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr6	TogoVar
LIN28B_chr6_104952107_105088332	105085777	C C	CCTCTCTC others(11): Show CCTCTCTCTCTCTCTCTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0004 a0001c0001t0004g0004	1	278	0.0036	18	c.69 others(29): Show c.6994_*6995insCTCTCTCTCTCTCTCTCT	LIN28B	ENSG00000187772.8	transcript	ENST00000345080.5	protein_coding		2446		chr6	TogoVar
LIN52_chr14_74079956_74206493	74130278	G G	GTTTGTTT others(11): Show GTTTGTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0203 a0001c0001t0014g0203	1	354	0.0028	18	c.283 others(37): Show c.283+29043_283+29044insGTTTTTTTTTTTTTTTTT	LIN52	ENSG00000205659.12	transcript	ENST00000555028.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LIN52_chr14_74079956_74206493	74130278	G G	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01081.hp2 HG01243.hp2 others(21): Show HG00639.hp1 HG01081.hp2 HG01243.hp2 HG01515.hp2 HG01516.hp2 HG02040.hp2 HG02451.hp1 HG02486.hp2 HG02559.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02735.hp2 HG02895.hp1 HG02895.hp2 HG02897.hp2 HG03471.hp2 HG03540.hp2 NA18522.hp2 NA18612.hp1 NA18984.hp1 NA19010.hp1 NA19067.hp2 NA19072.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0001t0012 a0001c0001t0021 a0001c0001t0023	a0001c0001t0001g0205 a0001c0001t0001g0227 a0001c0001t0001g0232 others(21): Show a0001c0001t0001g0205 a0001c0001t0001g0227 a0001c0001t0001g0232 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0251 a0001c0001t0001g0255 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0289 a0001c0001t0001g0290 a0001c0001t0002g0260 a0001c0001t0006g0211 a0001c0001t0006g0275 a0001c0001t0007g0247 a0001c0001t0012g0078 a0001c0001t0012g0083 a0001c0001t0021g0084 a0001c0001t0023g0343	24	354	0.0678	18	c.283 others(37): Show c.283+29041_283+29058dupTTTTTTTTTTTTTTTTTT	LIN52	ENSG00000205659.12	transcript	ENST00000555028.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LIN52_chr14_74079956_74206493	74175020	A A	AAATAATA others(11): Show AAATAATAATAATAATAAT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp2 HG00423.hp2 others(139): Show HG00099.hp1 HG00280.hp2 HG00423.hp2 HG00438.hp2 HG00544.hp2 HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp2 HG00673.hp2 HG00738.hp2 HG01069.hp1 HG01071.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01167.hp2 HG01175.hp1 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp2 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01358.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01516.hp2 HG01884.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp2 HG01943.hp2 HG01978.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp1 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02280.hp1 HG02572.hp1 HG02572.hp2 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp2 HG02735.hp2 HG02738.hp2 HG02809.hp2 HG02886.hp1 HG02895.hp2 HG02897.hp2 HG03017.hp2 HG03041.hp1 HG03130.hp2 HG03239.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp2 HG03492.hp1 HG03540.hp2 HG03669.hp2 HG03831.hp1 HG03942.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18940.hp1 NA18941.hp1 NA18942.hp2 NA18944.hp2 NA18946.hp2 NA18947.hp2 NA18948.hp1 NA18950.hp1 NA18953.hp2 NA18956.hp2 NA18957.hp2 NA18959.hp2 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18964.hp2 NA18975.hp2 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18988.hp1 NA18991.hp2 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19057.hp2 NA19062.hp1 NA19065.hp2 NA19067.hp2 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19075.hp1 NA19077.hp1 NA19079.hp2 NA19080.hp1 NA19082.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp2 NA19088.hp2 NA19090.hp1 NA19091.hp2 NA20129.hp2 NA20805.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(16): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0018 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0030 a0001c0001t0039 a0001c0001t0042	a0001c0001t0001g0205 a0001c0001t0001g0213 a0001c0001t0001g0214 others(139): Show a0001c0001t0001g0205 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0231 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0259 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0286 a0001c0001t0001g0290 a0001c0001t0001g0291 a0001c0001t0001g0292 a0001c0001t0001g0293 a0001c0001t0001g0294 a0001c0001t0001g0338 a0001c0001t0001g0339 a0001c0001t0001g0340 a0001c0001t0001g0341 a0001c0001t0002g0027 a0001c0001t0002g0073 a0001c0001t0002g0260 a0001c0001t0002g0261 a0001c0001t0003g0005 a0001c0001t0003g0007 a0001c0001t0003g0008 a0001c0001t0003g0012 a0001c0001t0003g0013 a0001c0001t0003g0015 a0001c0001t0003g0016 a0001c0001t0003g0017 a0001c0001t0003g0018 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0032 a0001c0001t0003g0034 a0001c0001t0003g0038 a0001c0001t0003g0040 a0001c0001t0003g0042 a0001c0001t0003g0045 a0001c0001t0003g0050 a0001c0001t0003g0052 a0001c0001t0003g0053 a0001c0001t0003g0054 a0001c0001t0003g0058 a0001c0001t0003g0059 a0001c0001t0003g0060 a0001c0001t0003g0061 a0001c0001t0003g0062 a0001c0001t0003g0064 a0001c0001t0003g0065 a0001c0001t0003g0068 a0001c0001t0003g0074 a0001c0001t0003g0076 a0001c0001t0003g0088 a0001c0001t0004g0006 a0001c0001t0004g0011 a0001c0001t0004g0014 a0001c0001t0004g0020 a0001c0001t0004g0021 a0001c0001t0004g0026 a0001c0001t0004g0029 a0001c0001t0004g0030 a0001c0001t0004g0036 a0001c0001t0004g0037 a0001c0001t0004g0043 a0001c0001t0004g0044 a0001c0001t0004g0047 a0001c0001t0004g0049 a0001c0001t0004g0057 a0001c0001t0004g0063 a0001c0001t0004g0066 a0001c0001t0004g0067 a0001c0001t0004g0070 a0001c0001t0004g0206 a0001c0001t0004g0208 a0001c0001t0004g0350 a0001c0001t0005g0299 a0001c0001t0005g0319 a0001c0001t0005g0330 a0001c0001t0006g0211 a0001c0001t0006g0275 a0001c0001t0007g0247 a0001c0001t0011g0204 a0001c0001t0012g0209 a0001c0001t0014g0198 a0001c0001t0014g0199 a0001c0001t0014g0200 a0001c0001t0014g0203 a0001c0001t0015g0039 a0001c0001t0015g0041 a0001c0001t0015g0090 a0001c0001t0016g0048 a0001c0001t0016g0051 a0001c0001t0016g0089 a0001c0001t0018g0271 a0001c0001t0022g0056 a0001c0001t0022g0075 a0001c0001t0023g0337 a0001c0001t0023g0343 a0001c0001t0024g0229 a0001c0001t0024g0230 a0001c0001t0030g0262 a0001c0001t0039g0031 a0001c0001t0042g0302	142	354	0.4011	18	c.284 others(37): Show c.284-23895_284-23878dupAATAATAATAATAATAAT	LIN52	ENSG00000205659.12	transcript	ENST00000555028.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LIN52_chr14_74079956_74206493	74175748	A A	ACACACAC others(11): Show ACACACACACACACACACC	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0100 a0001c0001t0006g0100	1	354	0.0028	18	c.284 others(37): Show c.284-23171_284-23170insACACACACACACACCCAC	LIN52	ENSG00000205659.12	transcript	ENST00000555028.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LIN54_chr4_82919603_83015823	82941149	G G	GATATATA others(11): Show GATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00423.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	304	0.0033	18	c.116 others(37): Show c.1169-1205_1169-1188dupATATATATATATATATAT	LIN54	ENSG00000189308.11	transcript	ENST00000340417.8	protein_coding	5/12			chr4	TogoVar
LIN7A_chr12_80787520_80942934	80807063	G G	GTTTTTTT others(11): Show GTTTTTTTTTGTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG02451.hp1 HG02647.hp2 others(3): Show HG00140.hp1 HG02451.hp1 HG02647.hp2 NA18984.hp1 NA18995.hp2 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0022 a0001c0001t0001 a0001c0001t0006 a0001c0001t0022	a0001c0001t0001g0144 a0001c0001t0001g0150 a0001c0001t0001g0238 others(3): Show a0001c0001t0001g0144 a0001c0001t0001g0150 a0001c0001t0001g0238 a0001c0001t0006g0011 a0001c0001t0006g0014 a0001c0001t0022g0172	6	292	0.0206	18	c.702 others(35): Show c.702+4401_702+4402insAAAAAAAACAAAAAAAAA	LIN7A	ENSG00000111052.8	transcript	ENST00000552864.6	protein_coding	5/5			chr12	TogoVar
LIN7A_chr12_80787520_80942934	80820630	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG01099.hp1 HG01261.hp1 others(5): Show HG00280.hp1 HG01099.hp1 HG01261.hp1 HG01346.hp2 HG02004.hp2 HG03017.hp1 HG03927.hp1 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0100 others(5): Show a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0100 a0001c0001t0001g0105 a0001c0001t0001g0116 a0001c0001t0001g0121 a0001c0001t0001g0149 a0001c0001t0002g0085	8	292	0.0274	18	c.484 others(35): Show c.484-8965_484-8948dupGTGTGTGTGTGTGTGTGT	LIN7A	ENSG00000111052.8	transcript	ENST00000552864.6	protein_coding	4/5			chr12	TogoVar
LIN7C_chr11_27489418_27511769	27501617	T T	TGAAGTTA others(11): Show TGAAGTTAAAATTTCAGGC	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00280.hp1 HG00280.hp2 others(226): Show HG00099.hp2 HG00280.hp1 HG00280.hp2 HG00408.hp1 HG00423.hp1 HG00423.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp2 HG01069.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp2 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01361.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01952.hp2 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02004.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp2 HG02056.hp2 HG02071.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02273.hp1 HG02273.hp2 HG02293.hp2 HG02451.hp2 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02896.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG03017.hp1 HG03017.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 NA18612.hp1 NA18747.hp2 NA18939.hp2 NA18941.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp2 NA18944.hp2 NA18945.hp1 NA18946.hp1 NA18951.hp1 NA18952.hp1 NA18954.hp1 NA18956.hp2 NA18957.hp1 NA18959.hp2 NA18960.hp2 NA18961.hp2 NA18962.hp1 NA18965.hp1 NA18965.hp2 NA18966.hp2 NA18967.hp1 NA18968.hp1 NA18969.hp1 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18972.hp1 NA18973.hp1 NA18975.hp1 NA18975.hp2 NA18979.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp2 NA18985.hp1 NA18986.hp1 NA18986.hp2 NA18987.hp1 NA18989.hp2 NA18991.hp2 NA18992.hp2 NA18993.hp2 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp2 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19004.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19054.hp1 NA19058.hp1 NA19058.hp2 NA19060.hp1 NA19062.hp2 NA19066.hp1 NA19066.hp2 NA19067.hp1 NA19068.hp1 NA19070.hp2 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19075.hp2 NA19076.hp1 NA19076.hp2 NA19077.hp1 NA19077.hp2 NA19078.hp1 NA19081.hp2 NA19082.hp2 NA19085.hp1 NA19085.hp2 NA19240.hp2 NA20752.hp1 NA20752.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0002c0002 a0003c0006 others(1): Show a0001c0001 a0002c0002 a0003c0006 a0004c0004	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(32): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0021 a0001c0001t0025 a0001c0001t0030 a0001c0001t0031 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0047 a0001c0001t0048 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054 a0001c0001t0059 a0001c0001t0060 a0002c0002t0001 a0002c0002t0018 a0002c0002t0050 a0003c0006t0004 a0004c0004t0001	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0022 others(49): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0022 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0094 a0001c0001t0001g0101 a0001c0001t0004g0003 a0001c0001t0004g0065 a0001c0001t0004g0070 a0001c0001t0004g0088 a0001c0001t0004g0095 a0001c0001t0005g0011 a0001c0001t0005g0014 a0001c0001t0005g0019 a0001c0001t0006g0006 a0001c0001t0006g0102 a0001c0001t0007g0008 a0001c0001t0007g0089 a0001c0001t0009g0012 a0001c0001t0012g0017 a0001c0001t0013g0016 a0001c0001t0014g0015 a0001c0001t0017g0023 a0001c0001t0018g0045 a0001c0001t0019g0040 a0001c0001t0019g0049 a0001c0001t0021g0029 a0001c0001t0025g0031 a0001c0001t0030g0032 a0001c0001t0031g0033 a0001c0001t0040g0066 a0001c0001t0041g0067 a0001c0001t0042g0062 a0001c0001t0043g0034 a0001c0001t0044g0035 a0001c0001t0045g0036 a0001c0001t0046g0037 a0001c0001t0047g0038 a0001c0001t0048g0039 a0001c0001t0052g0041 a0001c0001t0053g0042 a0001c0001t0054g0064 a0001c0001t0059g0068 a0001c0001t0060g0069 a0002c0002t0001g0104 a0002c0002t0018g0105 a0002c0002t0050g0103 a0003c0006t0004g0071 a0004c0004t0001g0043	229	406	0.5640	18	c.157 others(31): Show c.157-69_157-52dupGCCTGAAATTTTAACTTC	LIN7C	ENSG00000148943.12	transcript	ENST00000278193.7	protein_coding	2/4			chr11	TogoVar
LINGO2_chr9_27932617_29218601	27981534	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19060.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0049 a0001c0001t0003g0049	1	62	0.0161	18	c.-35 others(37): Show c.-35-30829_-35-30828insTTTTTTTTTTTTTTTTTT	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	6/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28384329	C C	CTATATAT others(11): Show CTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0025	a0001c0001t0025g0055 a0001c0001t0025g0055	1	62	0.0161	18	c.-22 others(39): Show c.-227-11479_-227-11462dupTATATATATATATATATA	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	4/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28433943	C C	CTATATAT others(11): Show CTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0034	a0001c0001t0034g0061 a0001c0001t0034g0061	1	62	0.0161	18	c.-22 others(39): Show c.-228+41996_-228+41997insTATATATATATATATATA	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	4/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28433949	C C	CTATATAT others(11): Show CTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0015 a0001c0001t0018g0015	1	62	0.0161	18	c.-22 others(39): Show c.-228+41973_-228+41990dupTATATATATATATATATA	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	4/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28506515	T T	TATATATA others(11): Show TATATATATAGATATATAG	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0050 a0002c0002t0001g0050	1	62	0.0161	18	c.-31 others(39): Show c.-313-30491_-313-30490insCTATATATCTATATATAT	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	3/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28675905	G G	GTATATAT others(11): Show GTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02809.hp1 NA19074.hp1 HG02809.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0003 a0001c0003t0009 a0001c0001t0003 a0001c0003t0009	a0001c0001t0003g0034 a0001c0003t0009g0036 a0001c0001t0003g0034 a0001c0003t0009g0036	2	62	0.0323	18	c.-39 others(37): Show c.-394-5643_-394-5626dupTATATATATATATATATA	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	2/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28744609	C C	CGTGTGTG others(11): Show CGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01261.hp1 HG01071.hp1 HG01261.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0047 a0001c0001t0004g0022 a0001c0001t0001g0047 a0001c0001t0004g0022	2	62	0.0323	18	c.-39 others(39): Show c.-394-74347_-394-74330dupACACACACACACACACAC	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	2/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28797349	T T	TAGAGAGA others(11): Show TAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA18995.hp1 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0044 a0001c0001t0002g0044	1	62	0.0161	18	c.-39 others(41): Show c.-394-127070_-394-127069insCTCTCTCTCTCTCTCTCT	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	2/6			chr9	TogoVar

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