Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LUC7L_chr16_183990_234449	186646	G G	GGGAACAG others(11): Show GGGAACAGCGACACGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0179 a0001c0001t0001g0179	1	350	0.0029	18	c.25 others(29): Show c.2551_*2552insTCCCCGTGTCGCTGTTCC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2343		chr16	TogoVar
LUC7L_chr16_183990_234449	186748	G G	GGGAACAG others(11): Show GGGAACAGCGACACGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02698.hp2 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0194 a0001c0001t0001g0194	1	350	0.0029	18	c.24 others(29): Show c.2449_*2450insTCCCCGTGTCGCTGTTCC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2241		chr16	TogoVar
LUC7L_chr16_183990_234449	188349	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01106.hp1 HG01243.hp1 HG03130.hp1 others(2): Show HG01106.hp1 HG01243.hp1 HG03130.hp1 HG03471.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0145 a0001c0001t0001g0210 a0001c0001t0001g0313 others(2): Show a0001c0001t0001g0145 a0001c0001t0001g0210 a0001c0001t0001g0313 a0001c0001t0001g0314 a0001c0001t0001g0319	5	350	0.0143	18	c.84 others(27): Show c.848_*849insTTTTTTTTTTTTTTTTTT	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		640		chr16	TogoVar
LURAP1L_chr9_12770020_12828060	12786547	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp2 HG00597.hp1 others(19): Show HG00140.hp1 HG00280.hp2 HG00597.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG02145.hp2 HG02165.hp2 HG02572.hp2 HG02698.hp2 HG02735.hp2 HG03098.hp1 HG03453.hp1 HG03654.hp1 HG04204.hp2 NA18939.hp1 NA18939.hp2 NA18975.hp2 NA19000.hp2 NA19002.hp2 NA19003.hp1 NA20905.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0002c0002 a0003c0003 others(2): Show a0001c0001 a0002c0002 a0003c0003 a0003c0009 a0004c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0002c0002t0001 a0002c0002t0002 a0002c0002t0003 a0002c0002t0005 a0003c0003t0001 a0003c0003t0002 a0003c0009t0001 a0004c0004t0017	a0001c0001t0001g0015 a0001c0001t0001g0086 a0001c0001t0001g0150 others(19): Show a0001c0001t0001g0015 a0001c0001t0001g0086 a0001c0001t0001g0150 a0001c0001t0001g0365 a0001c0001t0001g0415 a0001c0001t0002g0187 a0001c0001t0002g0226 a0001c0001t0004g0281 a0001c0001t0004g0320 a0001c0001t0007g0282 a0002c0002t0001g0008 a0002c0002t0001g0346 a0002c0002t0001g0355 a0002c0002t0002g0060 a0002c0002t0003g0038 a0002c0002t0003g0366 a0002c0002t0005g0134 a0003c0003t0001g0007 a0003c0003t0001g0333 a0003c0003t0002g0280 a0003c0009t0001g0326 a0004c0004t0017g0416	22	418	0.0526	18	c.312 others(37): Show c.312+10538_312+10555dupTATATATATATATATATA	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr9	TogoVar
LURAP1L_chr9_12770020_12828060	12786581	T T	TATATATA others(11): Show TATATATATATATATAAAC	intron_variant intron_variant	MODIFIER	HG02040.hp1 NA18982.hp2 HG02040.hp1 NA18982.hp2	a0001 a0008 a0001 a0008	a0001c0001 a0008c0013 a0001c0001 a0008c0013	a0001c0001t0002 a0008c0013t0006 a0001c0001t0002 a0008c0013t0006	a0001c0001t0002g0165 a0008c0013t0006g0033 a0001c0001t0002g0165 a0008c0013t0006g0033	2	418	0.0048	18	c.312 others(37): Show c.312+10555_312+10556insTATATATATATATAAACA	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr9	TogoVar
LURAP1L_chr9_12770020_12828060	12788189	A A	AAGAAAGA others(11): Show AAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00621.hp1 HG01496.hp1 others(25): Show HG00423.hp1 HG00621.hp1 HG01496.hp1 HG02027.hp1 HG02165.hp1 HG02523.hp1 NA18947.hp1 NA18949.hp2 NA18950.hp2 NA18951.hp2 NA18961.hp1 NA18964.hp2 NA18966.hp2 NA18983.hp1 NA18991.hp1 NA18991.hp2 NA19002.hp2 NA19054.hp2 NA19057.hp1 NA19060.hp1 NA19074.hp1 NA19074.hp2 NA19077.hp2 NA19080.hp2 NA19085.hp1 NA19086.hp2 NA19088.hp1 NA19088.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0002c0002t0001 a0002c0002t0002 a0002c0002t0006	a0001c0001t0001g0001 a0001c0001t0001g0079 a0001c0001t0001g0101 others(25): Show a0001c0001t0001g0001 a0001c0001t0001g0079 a0001c0001t0001g0101 a0001c0001t0001g0114 a0001c0001t0001g0161 a0001c0001t0001g0166 a0001c0001t0001g0171 a0001c0001t0001g0181 a0001c0001t0001g0221 a0001c0001t0002g0177 a0001c0001t0002g0199 a0001c0001t0002g0214 a0001c0001t0002g0226 a0001c0001t0002g0243 a0001c0001t0003g0213 a0001c0001t0004g0287 a0002c0002t0001g0001 a0002c0002t0001g0018 a0002c0002t0001g0173 a0002c0002t0001g0198 a0002c0002t0001g0344 a0002c0002t0002g0013 a0002c0002t0002g0047 a0002c0002t0002g0052 a0002c0002t0002g0053 a0002c0002t0002g0054 a0002c0002t0002g0058 a0002c0002t0006g0220	28	418	0.0670	18	c.312 others(37): Show c.312+12167_312+12168insGAAAGAAAGAAAGAGAAA	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr9	TogoVar
LURAP1L_chr9_12770020_12828060	12807094	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02523.hp1 HG02132.hp1 HG02523.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0177 a0001c0001t0002g0190 a0001c0001t0002g0177 a0001c0001t0002g0190	2	418	0.0048	18	c.313 others(37): Show c.313-14285_313-14268dupATATATATATATATATAT	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr9	TogoVar
LURAP1_chr1_46198334_46226256	46202920	G G	GTGGTGTG others(11): Show GTGGTGTGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG03139.hp1 HG00544.hp2 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0004 a0001c0001t0005	a0001c0001t0004g0227 a0001c0001t0005g0217 a0001c0001t0004g0227 a0001c0001t0005g0217	2	356	0.0056	18	c.-50 others(27): Show c.-507_-506insTGGTGTGTGTGTGTGTGT	LURAP1	ENSG00000171357.6	transcript	ENST00000371980.4	protein_coding		413		chr1	TogoVar
LURAP1_chr1_46198334_46226256	46211439	G G	GCACACAT others(11): Show GCACACATACACACACACA	intron_variant intron_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0071 a0001c0001t0001g0071	1	356	0.0028	18	c.198 others(35): Show c.198+7821_198+7822insTACACACACACACACACA	LURAP1	ENSG00000171357.6	transcript	ENST00000371980.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr1	TogoVar
LURAP1_chr1_46198334_46226256	46222303	A A	AGGGGACG others(11): Show AGGGGACGGTCCCAGAGAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02135.hp1 HG02523.hp2 NA18969.hp2 others(2): Show HG02135.hp1 HG02523.hp2 NA18969.hp2 NA18994.hp1 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 others(2): Show a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0075 a0001c0001t0001g0129	5	356	0.0140	18	c.20 others(29): Show c.2083_*2084insGGGGACGGTCCCAGAGAT	LURAP1	ENSG00000171357.6	transcript	ENST00000371980.4	protein_coding		1048		chr1	TogoVar
LUZP1_chr1_23079030_23173856	23117454	C C	CCTCTCTC others(11): Show CCTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0128 a0001c0001t0001g0128	1	322	0.0031	18	c.-22 others(37): Show c.-225-8345_-225-8328dupAGAGAGAGAGAGAGAGAG	LUZP1	ENSG00000169641.15	transcript	ENST00000302291.9	protein_coding	1/3			chr1	TogoVar
LUZP2_chr11_24492053_25087638	24531039	T T	TTTATTAT others(11): Show TTTATTATTATTATTATTA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp2 HG02451.hp2 others(3): Show HG01891.hp1 HG01891.hp2 HG02451.hp2 HG03041.hp1 HG03453.hp2 NA18522.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 others(3): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0010 a0001c0003t0012 a0002c0002t0009	a0001c0001t0002g0040 a0001c0001t0003g0024 a0001c0001t0006g0035 others(3): Show a0001c0001t0002g0040 a0001c0001t0003g0024 a0001c0001t0006g0035 a0001c0001t0010g0037 a0001c0003t0012g0046 a0002c0002t0009g0005	6	116	0.0517	18	c.62+ others(35): Show c.62+33743_62+33760dupATTATTATTATTATTATT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24561816	T T	TATAATAA others(11): Show TATAATAATAATAATAATA	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG01975.hp1 HG02451.hp1 others(6): Show HG00423.hp1 HG01975.hp1 HG02451.hp1 HG02896.hp2 HG02970.hp2 HG03041.hp1 HG03540.hp2 HG06807.hp2 NA19240.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0003 a0002c0002 others(1): Show a0001c0001 a0001c0003 a0002c0002 a0003c0004	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(5): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0014 a0001c0003t0012 a0002c0002t0008 a0003c0004t0018	a0001c0001t0002g0025 a0001c0001t0002g0106 a0001c0001t0003g0114 others(6): Show a0001c0001t0002g0025 a0001c0001t0002g0106 a0001c0001t0003g0114 a0001c0001t0004g0085 a0001c0001t0005g0006 a0001c0001t0014g0002 a0001c0003t0012g0046 a0002c0002t0008g0021 a0003c0004t0018g0098	9	116	0.0776	18	c.62+ others(35): Show c.62+64525_62+64526insAATAATAATAATAATAAT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24561828	A A	AATAATAA others(11): Show AATAATAATAATAATAATG	intron_variant intron_variant	MODIFIER	HG02080.hp2 HG02080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0099 a0001c0001t0002g0099	1	116	0.0086	18	c.62+ others(35): Show c.62+64525_62+64526insAATAATAATAATAATGAT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24601877	C C	CATGTATA others(11): Show CATGTATATATGTATATAT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG03453.hp2 HG06807.hp2 others(2): Show HG02145.hp1 HG03453.hp2 HG06807.hp2 NA18906.hp2 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0001c0001t0005 a0001c0001t0011 others(2): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0011 a0002c0002t0001 a0002c0002t0009	a0001c0001t0002g0040 a0001c0001t0005g0006 a0001c0001t0011g0082 others(2): Show a0001c0001t0002g0040 a0001c0001t0005g0006 a0001c0001t0011g0082 a0002c0002t0001g0045 a0002c0002t0009g0043	5	116	0.0431	18	c.62+ others(37): Show c.62+104573_62+104590dupATGTATATATGTATATAT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24742057	T T	TTTTATAT others(11): Show TTTTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0090 a0001c0001t0038g0090	1	116	0.0086	18	c.333 others(35): Show c.333+3756_333+3757insTTATATATATATATATAT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	4/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24774362	C C	CTCTCTCT others(11): Show CTCTCTCTCTATATATATA	intron_variant intron_variant	MODIFIER	NA18981.hp1 NA18981.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0066 a0002c0002t0001g0066	1	116	0.0086	18	c.396 others(37): Show c.396+11055_396+11056insCTCTCTCTATATATATAT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24774362	C C	CTCTCTCT others(11): Show CTCTCTCTCTCTATATATA	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0083 a0002c0002t0001g0083	1	116	0.0086	18	c.396 others(37): Show c.396+11055_396+11056insCTCTCTCTCTATATATAT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24826190	A A	AAAATATA others(11): Show AAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02083.hp2 HG03579.hp2 HG02055.hp2 HG02083.hp2 HG03579.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0016 a0002c0002t0001 a0002c0002t0024 a0001c0001t0016 a0002c0002t0001 a0002c0002t0024	a0001c0001t0016g0033 a0002c0002t0001g0011 a0002c0002t0024g0089 a0001c0001t0016g0033 a0002c0002t0001g0011 a0002c0002t0024g0089	3	116	0.0259	18	c.396 others(37): Show c.396+62883_396+62884insAATATATATATATATATA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24926345	G G	GTATATAT others(11): Show GTATATATATACGTGTGTA	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01106.hp1 HG01256.hp2 others(27): Show HG01071.hp1 HG01106.hp1 HG01256.hp2 HG01261.hp1 HG01516.hp1 HG01884.hp2 HG01891.hp1 HG01943.hp2 HG02055.hp1 HG02080.hp2 HG02083.hp1 HG02165.hp2 HG02273.hp2 HG02280.hp1 HG02451.hp1 HG02683.hp2 HG03017.hp2 HG03098.hp1 HG03130.hp1 HG03209.hp2 HG03225.hp2 HG03239.hp1 HG03486.hp1 HG03834.hp1 NA18612.hp2 NA19030.hp1 NA19070.hp2 NA20129.hp2 NA20752.hp1 NA20752.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0003 a0002c0002 others(1): Show a0001c0001 a0001c0003 a0002c0002 a0004c0005	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(11): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0033 a0001c0001t0034 a0001c0003t0019 a0002c0002t0001 a0002c0002t0008 a0002c0002t0023 a0004c0005t0002	a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0016 others(27): Show a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0016 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0027 a0001c0001t0002g0028 a0001c0001t0002g0065 a0001c0001t0002g0073 a0001c0001t0002g0099 a0001c0001t0003g0024 a0001c0001t0003g0031 a0001c0001t0003g0032 a0001c0001t0003g0041 a0001c0001t0003g0042 a0001c0001t0003g0114 a0001c0001t0005g0102 a0001c0001t0007g0012 a0001c0001t0010g0038 a0001c0001t0010g0080 a0001c0001t0011g0107 a0001c0001t0013g0051 a0001c0001t0033g0112 a0001c0001t0034g0053 a0001c0003t0019g0096 a0002c0002t0001g0013 a0002c0002t0001g0074 a0002c0002t0008g0116 a0002c0002t0023g0022 a0004c0005t0002g0087	30	116	0.2586	18	c.522 others(37): Show c.522+11834_522+11851dupTACGTGTGTATATATATA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24926356	C C	CGTGTGTA others(11): Show CGTGTGTATATATATACGT	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0084 a0001c0001t0003g0084	1	116	0.0086	18	c.522 others(37): Show c.522+11833_522+11834insCGTGTGTGTATATATATA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24984524	T T	TTATATAT others(11): Show TTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG00621.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0027 a0002c0002t0027	a0002c0002t0027g0100 a0002c0002t0027g0100	1	116	0.0086	18	c.765 others(35): Show c.765+1240_765+1257dupTATATATATATATATATA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24984549	T T	TATATATA others(11): Show TATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01256.hp2 HG02896.hp2 others(5): Show HG00621.hp1 HG01256.hp2 HG02896.hp2 HG02965.hp2 HG03471.hp2 HG03540.hp2 NA19030.hp1 NA19043.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0003 a0002c0002 others(2): Show a0001c0001 a0001c0003 a0002c0002 a0003c0004 a0004c0005	a0001c0001t0002 a0001c0001t0003 a0001c0001t0020 others(4): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0020 a0001c0003t0019 a0002c0002t0001 a0003c0004t0018 a0004c0005t0002	a0001c0001t0002g0025 a0001c0001t0003g0081 a0001c0001t0003g0084 others(5): Show a0001c0001t0002g0025 a0001c0001t0003g0081 a0001c0001t0003g0084 a0001c0001t0020g0097 a0001c0003t0019g0096 a0002c0002t0001g0014 a0003c0004t0018g0098 a0004c0005t0002g0087	8	116	0.0690	18	c.765 others(35): Show c.765+1257_765+1258insTATATATATATATATAAA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	25040343	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0050 a0001c0003t0004g0050	1	116	0.0086	18	c.766 others(35): Show c.766-9692_766-9675dupTTTTTTTTTTTTTTTTTT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LVRN_chr5_115957475_116032606	115961323	A A	AACACACA others(11): Show AACACACACACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18998.hp2 NA19010.hp1 NA18998.hp2 NA19010.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0183 a0001c0001t0001g0340 a0001c0001t0001g0183 a0001c0001t0001g0340	2	418	0.0048	18	c.-12 others(29): Show c.-1295_-1294insACACACACACACACACAC	LVRN	ENSG00000172901.21	transcript	ENST00000357872.9	protein_coding		1151		chr5	TogoVar
LVRN_chr5_115957475_116032606	115961358	A A	ACACACAC others(11): Show ACACACACACACACACACG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19054.hp1 NA19054.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0185 a0001c0001t0001g0185	1	418	0.0024	18	c.-12 others(29): Show c.-1260_-1259insCACACACACACACACACG	LVRN	ENSG00000172901.21	transcript	ENST00000357872.9	protein_coding		1116		chr5	TogoVar
LVRN_chr5_115957475_116032606	115961358	A A	ACACACAC others(11): Show ACACACACGCGCGCGCGCG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0237 a0001c0004t0001g0237	1	418	0.0024	18	c.-12 others(29): Show c.-1260_-1259insCACACACGCGCGCGCGCG	LVRN	ENSG00000172901.21	transcript	ENST00000357872.9	protein_coding		1116		chr5	TogoVar
LVRN_chr5_115957475_116032606	115961358	A A	ACACACGC others(11): Show ACACACGCGCGCGCGCGCG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp1 HG03540.hp1 HG02922.hp1 HG03540.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0002 a0001c0004t0001 a0001c0002t0002 a0001c0004t0001	a0001c0002t0002g0235 a0001c0004t0001g0288 a0001c0002t0002g0235 a0001c0004t0001g0288	2	418	0.0048	18	c.-12 others(29): Show c.-1260_-1259insCACACGCGCGCGCGCGCG	LVRN	ENSG00000172901.21	transcript	ENST00000357872.9	protein_coding		1116		chr5	TogoVar
LY6G6C_chr6_31713648_31726746	31718320	C C	CCTGAGAG others(11): Show CCTGAGAGAAACTGAAGAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0030 a0001c0002t0002g0030	1	399	0.0025	18	c.77 others(27): Show c.775_*776insTTCTTCAGTTTCTCTCAG	LY6G6C	ENSG00000204421.3	transcript	ENST00000375819.3	protein_coding		327		chr6	TogoVar
LY6G6D_chr6_31710348_31722919	31718320	C C	CCTGAGAG others(11): Show CCTGAGAGAAACTGAAGAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0018 a0001c0001t0001g0018	1	401	0.0025	18	c.51 others(27): Show c.516_*517insCTGAGAGAAACTGAAGAA	LY6G6D	ENSG00000244355.8	transcript	ENST00000375825.8	protein_coding		402		chr6	TogoVar
LY75_chr2_159798355_159909756	159840005	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG02559.hp1 HG03927.hp2 others(7): Show HG01361.hp2 HG02559.hp1 HG03927.hp2 HG03942.hp1 NA18747.hp1 NA18964.hp1 NA18979.hp2 NA19000.hp1 NA19090.hp2 NA20752.hp1	a0001 a0003 a0004 others(3): Show a0001 a0003 a0004 a0008 a0014 a0016	a0001c0003 a0001c0015 a0003c0065 others(4): Show a0001c0003 a0001c0015 a0003c0065 a0004c0010 a0008c0009 a0014c0041 a0016c0027	a0001c0003t0001 a0001c0003t0003 a0001c0015t0002 others(5): Show a0001c0003t0001 a0001c0003t0003 a0001c0015t0002 a0003c0065t0003 a0004c0010t0001 a0008c0009t0002 a0014c0041t0003 a0016c0027t0001	a0001c0003t0001g0269 a0001c0003t0003g0259 a0001c0003t0003g0283 others(7): Show a0001c0003t0001g0269 a0001c0003t0003g0259 a0001c0003t0003g0283 a0001c0003t0003g0305 a0001c0015t0002g0297 a0003c0065t0003g0044 a0004c0010t0001g0116 a0008c0009t0002g0295 a0014c0041t0003g0052 a0016c0027t0001g0280	10	330	0.0303	18	c.350 others(35): Show c.3507+723_3507+724insTTTTTTTTTTTTTTTTTT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	25/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159850773	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19083.hp2 NA19083.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0072 a0002c0002t0002g0072	1	330	0.0030	18	c.288 others(35): Show c.2884-324_2884-307dupATATATATATATATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	21/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159850789	T T	TATATATA others(11): Show TATATATATATATATAAAA	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0011 a0011	a0011c0066 a0011c0066	a0011c0066t0004 a0011c0066t0004	a0011c0066t0004g0115 a0011c0066t0004g0115	1	330	0.0030	18	c.288 others(35): Show c.2884-323_2884-322insTTTTATATATATATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	21/34			chr2	TogoVar
LY86_chr6_6583720_6659982	6585671	T T	TTATATAT others(11): Show TTATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18986.hp1 NA18986.hp2 NA19012.hp1 others(1): Show NA18986.hp1 NA18986.hp2 NA19012.hp1 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0131 others(1): Show a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0131 a0001c0001t0001g0363	4	424	0.0094	18	c.-30 others(29): Show c.-3064_-3063insTATATATATATATATATA	LY86	ENSG00000112799.9	transcript	ENST00000230568.5	protein_coding		3048		chr6	TogoVar
LY96_chr8_73986392_74034079	73992836	C C	CTGTGTGT others(11): Show CTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01981.hp2 HG02293.hp1 others(1): Show HG01261.hp1 HG01981.hp2 HG02293.hp1 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0255 others(1): Show a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0256	4	314	0.0127	18	c.112 others(35): Show c.112+1305_112+1322dupTGTGTGTGTGTGTGTGTG	LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
LY96_chr8_73986392_74034079	73996374	T T	TTCCTTCC others(11): Show TTCCTTCCTTCCTTCCTTC	intron_variant intron_variant	MODIFIER	HG03490.hp2 HG03490.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0204 a0001c0001t0001g0204	1	314	0.0032	18	c.112 others(35): Show c.112+4821_112+4822insCCTTCCTTCCTTCCTTCT	LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
LY96_chr8_73986392_74034079	74002093	T T	TTCTTTCT others(11): Show TTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02257.hp2 NA18979.hp1 NA19011.hp2 HG02257.hp2 NA18979.hp1 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0019 a0001c0001t0001g0046 a0001c0001t0001g0075 a0001c0001t0001g0019 a0001c0001t0001g0046 a0001c0001t0001g0075	3	314	0.0096	18	c.113 others(35): Show c.113-2700_113-2699insTTCTTTCTTTCTTTCTCT	LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
LY96_chr8_73986392_74034079	74002095	C C	CTTTATTT others(11): Show CTTTATTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0260 a0001c0001t0001g0260	1	314	0.0032	18	c.113 others(35): Show c.113-2700_113-2699insTTATTTCTTTCTTTCTTT	LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
LY96_chr8_73986392_74034079	74002095	C C	CTTTCTTT others(11): Show CTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00423.hp2 NA18959.hp1 HG00423.hp2 NA18959.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0042 a0001c0001t0001g0012 a0001c0001t0001g0042	2	314	0.0064	18	c.113 others(35): Show c.113-2700_113-2699insTTCTTTCTTTCTTTCTTT	LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
LY9_chr1_160791174_160833255	160821151	T T	TAAAAAAA others(11): Show TAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01109.hp1 NA18949.hp2 NA19066.hp1 others(1): Show HG01109.hp1 NA18949.hp2 NA19066.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0091 a0001c0001t0001g0111 a0001c0001t0001g0126 others(1): Show a0001c0001t0001g0091 a0001c0001t0001g0111 a0001c0001t0001g0126 a0001c0001t0003g0195	4	394	0.0102	18	c.149 others(37): Show c.1498+1778_1498+1795dupAAAAAAAAAAAAAAAAAA	LY9	ENSG00000122224.18	transcript	ENST00000263285.11	protein_coding	7/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
LYAR_chr4_4262701_4295154	4294872	C C	CGTGTATG others(11): Show CGTGTATGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG00609.hp2 HG03831.hp2 others(2): Show HG00544.hp2 HG00609.hp2 HG03831.hp2 NA18950.hp1 NA18961.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0002 a0001c0001t0003g0029 a0001c0001t0003g0056 a0001c0001t0003g0002 a0001c0001t0003g0029 a0001c0001t0003g0056	5	436	0.0115	18	c.-49 others(29): Show c.-4945_-4944insACACACACACACATACAC	LYAR	ENSG00000145220.14	transcript	ENST00000343470.9	protein_coding		4719		chr4	TogoVar
LYL1_chr19_13094033_13107858	13100314	A A	ATGGCTGT others(11): Show ATGGCTGTGGTCTTGTGGC	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01243.hp2 NA18522.hp1 HG01192.hp2 HG01243.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0003 a0001c0004t0003 a0001c0001t0003 a0001c0004t0003	a0001c0001t0003g0026 a0001c0004t0003g0016 a0001c0001t0003g0026 a0001c0004t0003g0016	3	366	0.0082	18	c.427 others(33): Show c.427+325_427+342dupGCCACAAGACCACAGCCA	LYL1	ENSG00000104903.5	transcript	ENST00000264824.5	protein_coding	3/3			chr19	TogoVar
LYN_chr8_55874835_56019169	55887575	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG01361.hp2 HG01433.hp2 others(7): Show HG00438.hp2 HG01361.hp2 HG01433.hp2 HG01943.hp1 HG01943.hp2 HG01993.hp2 HG02630.hp1 HG04204.hp1 NA18747.hp2 NA19070.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0031 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0031 a0001c0002t0017	a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0098 others(7): Show a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0098 a0001c0001t0001g0115 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0122 a0001c0001t0002g0278 a0001c0001t0031g0116 a0001c0002t0017g0062	10	288	0.0347	18	c.-6+ others(33): Show c.-6+7484_-6+7501dupCACACACACACACACACA	LYN	ENSG00000254087.8	transcript	ENST00000519728.6	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr8	TogoVar
LYN_chr8_55874835_56019169	55887575	T T	TATATACA others(11): Show TATATACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0029 a0001c0001t0001g0029	1	288	0.0035	18	c.-6+ others(33): Show c.-6+7473_-6+7474insTATACACACACACACACA	LYN	ENSG00000254087.8	transcript	ENST00000519728.6	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr8	TogoVar
LYN_chr8_55874835_56019169	55939462	A A	AAGAGAGA others(11): Show AAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG03139.hp2 HG01167.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0014 a0001c0001t0001 a0001c0002t0014	a0001c0001t0001g0003 a0001c0002t0014g0232 a0001c0001t0001g0003 a0001c0002t0014g0232	2	288	0.0069	18	c.-5- others(33): Show c.-5-2385_-5-2368dupGAGAGAGAGAGAGAGAGA	LYN	ENSG00000254087.8	transcript	ENST00000519728.6	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr8	TogoVar
LYPD1_chr2_132638286_132675205	132668242	A A	AACTCTTC others(11): Show AACTCTTCATTTTCCCAGC	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0121 a0001c0001t0001g0121	1	354	0.0028	18	c.190 others(33): Show c.190+140_190+157dupGCTGGGAAAATGAAGAGT	LYPD1	ENSG00000150551.11	transcript	ENST00000397463.3	protein_coding	2/2			chr2	TogoVar
LYPD1_chr2_132638286_132675205	132671550	C C	CCTCCCTC others(11): Show CCTCCCTCCCTCTCCCCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0049 a0001c0001t0011g0049	1	354	0.0028	18	c.-16 others(29): Show c.-1636_-1619dupAGGGGGAGAGGGAGGGAG	LYPD1	ENSG00000150551.11	transcript	ENST00000397463.3	protein_coding		1346		chr2	TogoVar
LYPD4_chr19_41832074_41849683	41836287	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp2 HG02300.hp1 NA18970.hp2 others(4): Show HG02280.hp2 HG02300.hp1 NA18970.hp2 NA18987.hp1 NA18989.hp2 NA18993.hp2 NA19087.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0014 a0001c0002t0002g0016 a0001c0002t0002g0036 others(4): Show a0001c0002t0002g0014 a0001c0002t0002g0016 a0001c0002t0002g0036 a0001c0002t0002g0084 a0001c0002t0002g0095 a0001c0002t0002g0105 a0001c0002t0002g0115	7	428	0.0164	18	c.85 others(27): Show c.855_*856insTTTTTTTTTTTTTTTTTT	LYPD4	ENSG00000273111.6	transcript	ENST00000609812.6	protein_coding		786		chr19	TogoVar
LYPD6B_chr2_149033699_149220262	149147906	C C	CTGTGTGT others(11): Show CTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG02559.hp2 HG02683.hp2 others(4): Show HG01175.hp1 HG02559.hp2 HG02683.hp2 HG02970.hp2 HG03225.hp2 HG03710.hp1 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0086 others(4): Show a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0086 a0001c0001t0001g0115 a0001c0001t0001g0125 a0001c0001t0001g0141 a0001c0001t0001g0144	7	264	0.0265	18	c.6-1 others(33): Show c.6-12840_6-12823dupGTGTGTGTGTGTGTGTGT	LYPD6B	ENSG00000150556.17	transcript	ENST00000409642.8	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
LYPD6B_chr2_149033699_149220262	149175061	C C	CTCTCTCT others(11): Show CTCTCTCTCTCTCTGTGTG	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00621.hp1 HG02293.hp1 others(1): Show HG00438.hp2 HG00621.hp1 HG02293.hp1 NA18989.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0074 a0001c0001t0001g0218 others(1): Show a0001c0001t0001g0033 a0001c0001t0001g0074 a0001c0001t0001g0218 a0001c0001t0001g0224	4	264	0.0152	18	c.77+ others(35): Show c.77+14227_77+14228insCTCTCTCTCTCTGTGTGT	LYPD6B	ENSG00000150556.17	transcript	ENST00000409642.8	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr2	TogoVar

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