Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PLK3_chr1_44795377_44810990	44797983	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp2 HG00735.hp1 NA20752.hp1 HG00280.hp2 HG00735.hp1 NA20752.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0002 a0001c0002t0001g0002	3	384	0.0078	18	c.-24 others(29): Show c.-2481_-2480insAAAAAAAAAAAAATATAT	PLK3	ENSG00000173846.13	transcript	ENST00000372201.5	protein_coding		2393		chr1	TogoVar
PLK3_chr1_44795377_44810990	44797983	A A	AATATATA others(11): Show AATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp1 HG03486.hp2 HG03225.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	384	0.0052	18	c.-24 others(29): Show c.-2481_-2480insATATATATATATATATAT	PLK3	ENSG00000173846.13	transcript	ENST00000372201.5	protein_coding		2393		chr1	TogoVar
PLK4_chr4_127875893_127904224	127897824	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0214 a0001c0001t0001g0214	1	364	0.0028	18	c.281 others(35): Show c.2811-598_2811-581dupTTTTTTTTTTTTTTTTTT	PLK4	ENSG00000142731.11	transcript	ENST00000270861.10	protein_coding	15/15		INFO_REALIGN_3_PRIME	chr4	TogoVar
PLK5_chr19_1519077_1541046	1528607	G G	GCCTCCCA others(11): Show GCCTCCCACCTGCCCACGC	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0188 a0001c0001t0009g0188	1	430	0.0023	18	c.328 others(33): Show c.328+181_328+182insTCCCACCTGCCCACGCCC	PLK5	ENSG00000185988.15	transcript	ENST00000454744.7	protein_coding	8/13		INFO_REALIGN_3_PRIME	chr19	TogoVar
PLOD1_chr1_11929717_11980537	11954937	T T	TAGGAGAA others(11): Show TAGGAGAATTCCAGGCAGG	intron_variant intron_variant	MODIFIER	NA19078.hp1 NA19078.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0284 a0002c0003t0001g0284	1	380	0.0026	18	c.643 others(31): Show c.643+48_643+49insGAATTCCAGGCAGGAGGA	PLOD1	ENSG00000083444.17	transcript	ENST00000196061.5	protein_coding	6/18		INFO_REALIGN_3_PRIME	chr1	TogoVar
PLOD1_chr1_11929717_11980537	11967593	G G	GTATATAT others(11): Show GTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03579.hp1 HG03516.hp2 HG03579.hp1	a0004 a0004	a0004c0011 a0004c0011	a0004c0011t0001 a0004c0011t0001	a0004c0011t0001g0305 a0004c0011t0001g0306 a0004c0011t0001g0305 a0004c0011t0001g0306	2	380	0.0053	18	c.175 others(35): Show c.1755+503_1755+504insATATATATATATATATAT	PLOD1	ENSG00000083444.17	transcript	ENST00000196061.5	protein_coding	16/18		INFO_REALIGN_3_PRIME	chr1	TogoVar
PLOD2_chr3_146064440_146166184	146067648	A A	ACACACAC others(11): Show ACACACACGCACACTTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02083.hp1 HG02083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0186 a0001c0001t0003g0186	1	366	0.0027	18	c.30 others(29): Show c.3068_*3069insCACAAGTGTGCGTGTGTG	PLOD2	ENSG00000152952.14	transcript	ENST00000282903.10	protein_coding		1791		chr3	TogoVar
PLP1_chrX_103771840_103797619	103783933	G G	GTATATAT others(11): Show GTATATATACATATATTTA	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00735.hp2 HG01070.hp1 others(16): Show HG00733.hp2 HG00735.hp2 HG01070.hp1 HG01071.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp2 HG01884.hp1 HG02109.hp2 HG02615.hp2 HG02818.hp1 HG02886.hp2 HG02965.hp1 HG03041.hp1 HG03453.hp1 HG03471.hp1 NA18522.hp1 NA19030.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0014 a0001c0001t0001 a0001c0001t0014	a0001c0001t0001g0003 a0001c0001t0001g0050 a0001c0001t0001g0062 others(1): Show a0001c0001t0001g0003 a0001c0001t0001g0050 a0001c0001t0001g0062 a0001c0001t0014g0003	19	317	0.0599	18	c.5-1 others(31): Show c.5-1636_5-1619dupTATTTATATATATACATA	PLP1	ENSG00000123560.14	transcript	ENST00000621218.5	protein_coding	1/6		INFO_REALIGN_3_PRIME	chrX	TogoVar
PLP2_chrX_49166898_49180235	49169081	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01261.hp1 HG02647.hp1 HG02886.hp1 others(8): Show HG01261.hp1 HG02647.hp1 HG02886.hp1 NA18906.hp2 NA18940.hp1 NA18966.hp1 NA18990.hp1 NA19005.hp1 NA19012.hp1 NA19058.hp1 NA19082.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0023 a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0023	11	260	0.0423	18	c.-29 others(29): Show c.-2920_-2919insAAAAAAAAAAAAAAAAAA	PLP2	ENSG00000102007.11	transcript	ENST00000376327.6	protein_coding		2816		chrX	TogoVar
PLPP1_chr5_55419854_55539964	55443192	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAAAATAT	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG02135.hp2 HG02698.hp1 HG01346.hp2 HG02135.hp2 HG02698.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0153 a0001c0001t0001g0157 a0001c0001t0001g0159 a0001c0001t0001g0153 a0001c0001t0001g0157 a0001c0001t0001g0159	3	294	0.0102	18	c.492 others(35): Show c.492-1285_492-1284insATATTTTTTTTTTTTTTT	PLPP1	ENSG00000067113.17	transcript	ENST00000307259.9	protein_coding	3/5			chr5	TogoVar
PLPP1_chr5_55419854_55539964	55443192	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01256.hp1 HG01258.hp2 others(4): Show HG01106.hp1 HG01256.hp1 HG01258.hp2 HG01358.hp2 HG02080.hp2 HG03017.hp1 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0010 a0001c0004t0001 a0001c0001t0001 a0001c0001t0010 a0001c0004t0001	a0001c0001t0001g0138 a0001c0001t0001g0144 a0001c0001t0001g0156 others(4): Show a0001c0001t0001g0138 a0001c0001t0001g0144 a0001c0001t0001g0156 a0001c0001t0001g0158 a0001c0001t0001g0160 a0001c0001t0010g0143 a0001c0004t0001g0141	7	294	0.0238	18	c.492 others(35): Show c.492-1285_492-1284insATATATTTTTTTTTTTTT	PLPP1	ENSG00000067113.17	transcript	ENST00000307259.9	protein_coding	3/5			chr5	TogoVar
PLPP1_chr5_55419854_55539964	55443192	A A	AAAAAAAA others(11): Show AAAAAAAAAAAATATATAT	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03669.hp2 HG03579.hp1 HG03669.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0209 a0001c0001t0001g0212 a0001c0001t0001g0209 a0001c0001t0001g0212	2	294	0.0068	18	c.492 others(35): Show c.492-1285_492-1284insATATATATTTTTTTTTTT	PLPP1	ENSG00000067113.17	transcript	ENST00000307259.9	protein_coding	3/5			chr5	TogoVar
PLPP1_chr5_55419854_55539964	55443192	A A	AAAAAAAA others(11): Show AAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0218 a0001c0001t0001g0218	1	294	0.0034	18	c.492 others(35): Show c.492-1285_492-1284insATATATATATTTTTTTTT	PLPP1	ENSG00000067113.17	transcript	ENST00000307259.9	protein_coding	3/5			chr5	TogoVar
PLPP1_chr5_55419854_55539964	55443192	A A	AAAATATA others(11): Show AAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00621.hp2 NA19009.hp1 HG00621.hp2 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0032 a0001c0001t0001g0034 a0001c0001t0001g0032 a0001c0001t0001g0034	2	294	0.0068	18	c.492 others(35): Show c.492-1285_492-1284insATATATATATATATATTT	PLPP1	ENSG00000067113.17	transcript	ENST00000307259.9	protein_coding	3/5			chr5	TogoVar
PLPP1_chr5_55419854_55539964	55443192	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02559.hp2 HG02055.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0069 a0001c0001t0001g0098 a0001c0001t0001g0069 a0001c0001t0001g0098	2	294	0.0068	18	c.492 others(35): Show c.492-1302_492-1285dupATATATATATATATATAT	PLPP1	ENSG00000067113.17	transcript	ENST00000307259.9	protein_coding	3/5			chr5	TogoVar
PLPP1_chr5_55419854_55539964	55444740	A A	AGTGTGTG others(11): Show AGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03486.hp1 HG03041.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0178 a0001c0001t0001g0180 a0001c0001t0001g0178 a0001c0001t0001g0180	2	294	0.0068	18	c.492 others(35): Show c.492-2833_492-2832insACACACACACACACACAC	PLPP1	ENSG00000067113.17	transcript	ENST00000307259.9	protein_coding	3/5			chr5	TogoVar
PLPP1_chr5_55419854_55539964	55444741	T T	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01099.hp1 HG01168.hp2 others(27): Show HG00140.hp2 HG01099.hp1 HG01168.hp2 HG01255.hp1 HG01255.hp2 HG01358.hp1 HG01358.hp2 HG02027.hp1 HG02145.hp2 HG02451.hp1 HG02622.hp1 HG03130.hp1 HG03491.hp1 HG03491.hp2 HG03654.hp2 HG04115.hp2 HG04184.hp1 NA18941.hp1 NA18949.hp1 NA18957.hp2 NA18960.hp2 NA18969.hp1 NA18979.hp1 NA18988.hp1 NA18994.hp2 NA19012.hp1 NA19030.hp1 NA19056.hp1 NA19063.hp1 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0010 a0001c0001t0001 a0001c0001t0010	a0001c0001t0001g0043 a0001c0001t0001g0048 a0001c0001t0001g0053 others(27): Show a0001c0001t0001g0043 a0001c0001t0001g0048 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0062 a0001c0001t0001g0065 a0001c0001t0001g0070 a0001c0001t0001g0079 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0105 a0001c0001t0001g0109 a0001c0001t0001g0120 a0001c0001t0001g0127 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0145 a0001c0001t0001g0164 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0263 a0001c0001t0001g0269 a0001c0001t0001g0285 a0001c0001t0010g0143	30	294	0.1020	18	c.492 others(35): Show c.492-2834_492-2833insCACACACACACACACACA	PLPP1	ENSG00000067113.17	transcript	ENST00000307259.9	protein_coding	3/5			chr5	TogoVar
PLPP1_chr5_55419854_55539964	55487729	T T	TAAAACAA others(11): Show TAAAACAAACAAATCTACC	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0006 a0001c0001t0005g0006	1	294	0.0034	18	c.59- others(35): Show c.59-12297_59-12280dupGGTAGATTTGTTTGTTTT	PLPP1	ENSG00000067113.17	transcript	ENST00000307259.9	protein_coding	1/5			chr5	TogoVar
PLPP3_chr1_56489761_56584563	56538959	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00673.hp2 HG01358.hp1 others(31): Show HG00639.hp2 HG00673.hp2 HG01358.hp1 HG01993.hp1 HG02040.hp2 HG02129.hp1 HG02559.hp2 HG02622.hp2 HG02738.hp2 HG02809.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02970.hp1 HG02976.hp2 HG03130.hp2 HG03195.hp2 HG03540.hp1 HG03710.hp1 HG03927.hp2 NA18939.hp2 NA18952.hp2 NA18964.hp1 NA18970.hp2 NA18979.hp1 NA18994.hp2 NA19001.hp2 NA19005.hp2 NA19011.hp2 NA19057.hp1 NA19072.hp2 NA19081.hp2 NA19090.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0003 a0001c0002t0001 a0001c0002t0002 others(4): Show a0001c0001t0003 a0001c0002t0001 a0001c0002t0002 a0001c0002t0006 a0001c0002t0007 a0001c0002t0015 a0001c0003t0004	a0001c0001t0003g0022 a0001c0001t0003g0054 a0001c0001t0003g0060 others(30): Show a0001c0001t0003g0022 a0001c0001t0003g0054 a0001c0001t0003g0060 a0001c0001t0003g0082 a0001c0001t0003g0155 a0001c0002t0001g0001 a0001c0002t0001g0044 a0001c0002t0001g0083 a0001c0002t0001g0088 a0001c0002t0001g0089 a0001c0002t0001g0090 a0001c0002t0001g0091 a0001c0002t0001g0116 a0001c0002t0001g0119 a0001c0002t0001g0142 a0001c0002t0001g0145 a0001c0002t0001g0146 a0001c0002t0001g0147 a0001c0002t0001g0158 a0001c0002t0001g0159 a0001c0002t0001g0203 a0001c0002t0001g0209 a0001c0002t0001g0245 a0001c0002t0001g0250 a0001c0002t0001g0254 a0001c0002t0001g0282 a0001c0002t0001g0304 a0001c0002t0001g0334 a0001c0002t0002g0316 a0001c0002t0006g0262 a0001c0002t0007g0136 a0001c0002t0015g0247 a0001c0003t0004g0261	34	336	0.1012	18	c.140 others(35): Show c.140-1848_140-1847insTTTTTTTTTTTTTTTTTT	PLPP3	ENSG00000162407.9	transcript	ENST00000371250.4	protein_coding	1/5			chr1	TogoVar
PLPP3_chr1_56489761_56584563	56538959	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAACAAA	intron_variant intron_variant	MODIFIER	HG02129.hp2 NA18961.hp2 HG02129.hp2 NA18961.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0019 a0001c0002t0005 a0001c0002t0019	a0001c0002t0005g0202 a0001c0002t0019g0211 a0001c0002t0005g0202 a0001c0002t0019g0211	2	336	0.0060	18	c.140 others(35): Show c.140-1848_140-1847insTTTGTTTTTTTTTTTTTT	PLPP3	ENSG00000162407.9	transcript	ENST00000371250.4	protein_coding	1/5			chr1	TogoVar
PLPP3_chr1_56489761_56584563	56538960	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAACAAAC	intron_variant intron_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0255 a0001c0002t0001g0255	1	336	0.0030	18	c.140 others(35): Show c.140-1849_140-1848insGTTTGTTTTTTTTTTTTT	PLPP3	ENSG00000162407.9	transcript	ENST00000371250.4	protein_coding	1/5			chr1	TogoVar
PLPP3_chr1_56489761_56584563	56557008	A A	AAGAAAGA others(11): Show AAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0266 a0001c0001t0002g0266	1	336	0.0030	18	c.140 others(37): Show c.140-19897_140-19896insCTTTCTTTCTTTCTTTCT	PLPP3	ENSG00000162407.9	transcript	ENST00000371250.4	protein_coding	1/5			chr1	TogoVar
PLPP3_chr1_56489761_56584563	56557008	A A	AAGAAAGA others(11): Show AAGAAAGAAAGAAAGAGAG	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02559.hp1 HG02071.hp2 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0248 a0001c0001t0003g0226 a0001c0001t0002g0248 a0001c0001t0003g0226	2	336	0.0060	18	c.140 others(37): Show c.140-19897_140-19896insCTCTCTTTCTTTCTTTCT	PLPP3	ENSG00000162407.9	transcript	ENST00000371250.4	protein_coding	1/5			chr1	TogoVar
PLPP4_chr10_120452227_120597065	120538052	C C	CTCTCTCT others(11): Show CTCTCTCTCTCTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02738.hp1 NA18978.hp1 HG02738.hp1 NA18978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	a0001c0001t0002g0240 a0001c0001t0005g0317 a0001c0001t0002g0240 a0001c0001t0005g0317	2	328	0.0061	18	c.445 others(37): Show c.445+16958_445+16959insCTCTCTCTCTGTGTGTGT	PLPP4	ENSG00000203805.11	transcript	ENST00000398250.6	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
PLPP4_chr10_120452227_120597065	120580678	C C	CACACACA others(11): Show CACACACACACACACACAA	intron_variant intron_variant	MODIFIER	HG02451.hp2 NA18522.hp2 NA18943.hp2 others(2): Show HG02451.hp2 NA18522.hp2 NA18943.hp2 NA18952.hp1 NA19076.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0003t0009 a0001c0003t0015 others(1): Show a0001c0001t0001 a0001c0003t0009 a0001c0003t0015 a0001c0004t0012	a0001c0001t0001g0153 a0001c0003t0009g0198 a0001c0003t0009g0199 others(2): Show a0001c0001t0001g0153 a0001c0003t0009g0198 a0001c0003t0009g0199 a0001c0003t0015g0111 a0001c0004t0012g0007	5	328	0.0152	18	c.616 others(35): Show c.616+5379_616+5380insACACACACACACACAAAC	PLPP4	ENSG00000203805.11	transcript	ENST00000398250.6	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
PLPPR1_chr9_101023727_101330135	101078087	G G	GAGGAGAA others(11): Show GAGGAGAAGGAGAAGGAGA	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00639.hp2 HG01256.hp1 others(9): Show HG00323.hp1 HG00639.hp2 HG01256.hp1 HG01978.hp1 HG02055.hp2 HG02145.hp1 HG02818.hp2 HG02922.hp1 NA18942.hp2 NA18980.hp2 NA19043.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0002t0003 a0001c0002t0013	a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0139 others(9): Show a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0002g0118 a0001c0001t0002g0121 a0001c0001t0002g0152 a0001c0001t0002g0180 a0001c0001t0006g0113 a0001c0001t0006g0185 a0001c0002t0003g0085 a0001c0002t0013g0091	12	203	0.0591	18	c.-46 others(37): Show c.-46+48988_-46+49005dupGAGAAGGAGAAGGAGAAG	PLPPR1	ENSG00000148123.15	transcript	ENST00000374874.8	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr9	TogoVar
PLPPR1_chr9_101023727_101330135	101167141	G G	GGGGTGTG others(11): Show GGGGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	NA18983.hp2 NA18983.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0066 a0001c0001t0001g0066	1	203	0.0049	18	c.-45 others(37): Show c.-45-18308_-45-18307insGGTGTGTGTGTGTGTGTG	PLPPR1	ENSG00000148123.15	transcript	ENST00000374874.8	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr9	TogoVar
PLPPR1_chr9_101023727_101330135	101167141	G G	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00741.hp1 HG01071.hp1 others(10): Show HG00099.hp2 HG00741.hp1 HG01071.hp1 HG01891.hp2 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG03209.hp1 HG03710.hp2 HG04115.hp1 NA18966.hp2 NA19060.hp1 NA19070.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0002t0008 a0001c0003t0001	a0001c0001t0001g0037 a0001c0001t0001g0057 a0001c0001t0001g0169 others(10): Show a0001c0001t0001g0037 a0001c0001t0001g0057 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0181 a0001c0001t0002g0031 a0001c0001t0002g0061 a0001c0001t0002g0138 a0001c0001t0004g0197 a0001c0001t0007g0096 a0001c0002t0008g0004 a0001c0002t0008g0005 a0001c0003t0001g0119	13	203	0.0640	18	c.-45 others(37): Show c.-45-18284_-45-18267dupGTGTGTGTGTGTGTGTGT	PLPPR1	ENSG00000148123.15	transcript	ENST00000374874.8	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr9	TogoVar
PLPPR1_chr9_101023727_101330135	101237979	C C	CTATATAT others(11): Show CTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02723.hp1 HG03130.hp2 others(1): Show HG01891.hp1 HG02723.hp1 HG03130.hp2 HG03710.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0019 a0001c0001t0024 others(1): Show a0001c0001t0001 a0001c0001t0019 a0001c0001t0024 a0001c0002t0003	a0001c0001t0001g0054 a0001c0001t0019g0098 a0001c0001t0024g0006 others(1): Show a0001c0001t0001g0054 a0001c0001t0019g0098 a0001c0001t0024g0006 a0001c0002t0003g0007	4	203	0.0197	18	c.64- others(35): Show c.64-31893_64-31876dupATATATATATATATATAT	PLPPR1	ENSG00000148123.15	transcript	ENST00000374874.8	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr9	TogoVar
PLPPR1_chr9_101023727_101330135	101316616	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG06807.hp1 HG02809.hp2 HG06807.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0008 a0001c0002t0008	a0001c0002t0008g0135 a0001c0002t0008g0148 a0001c0002t0008g0135 a0001c0002t0008g0148	2	203	0.0099	18	c.814 others(33): Show c.814-737_814-736insAAAAAAAAAAAAAAAAAA	PLPPR1	ENSG00000148123.15	transcript	ENST00000374874.8	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr9	TogoVar
PLPPR4_chr1_99259492_99314584	99271943	T T	TGTGTGTG others(11): Show TGTGTGTGTGTGTGTGTGA	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02809.hp2 HG02630.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0086 a0001c0001t0001g0149 a0001c0001t0001g0086 a0001c0001t0001g0149	2	384	0.0052	18	c.78+ others(33): Show c.78+7273_78+7274insTGTGTGTGTGTGTGTGAG	PLPPR4	ENSG00000117600.14	transcript	ENST00000370185.9	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
PLPPR5_chr1_98885245_99009861	98928548	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02109.hp1 NA18522.hp1 NA18951.hp2 others(1): Show HG02109.hp1 NA18522.hp1 NA18951.hp2 NA18968.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0007 a0001c0001t0003 a0001c0001t0007	a0001c0001t0003g0187 a0001c0001t0003g0228 a0001c0001t0003g0238 others(1): Show a0001c0001t0003g0187 a0001c0001t0003g0228 a0001c0001t0003g0238 a0001c0001t0007g0094	4	280	0.0143	18	c.622 others(35): Show c.622-6508_622-6491dupATATATATATATATATAT	PLPPR5	ENSG00000117598.14	transcript	ENST00000263177.5	protein_coding	3/5			chr1	TogoVar
PLPPR5_chr1_98885245_99009861	98950219	C C	CTTTTACC others(11): Show CTTTTACCCATTTAAGTGG	intron_variant intron_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0081 a0001c0001t0041g0081	1	280	0.0036	18	c.621 others(35): Show c.621+2850_621+2851insCCACTTAAATGGGTAAAA	PLPPR5	ENSG00000117598.14	transcript	ENST00000263177.5	protein_coding	3/5			chr1	TogoVar
PLPPR5_chr1_98885245_99009861	99001671	G G	GATAGATA others(11): Show GATAGATAGATAGATATAT	intron_variant intron_variant	MODIFIER	HG02074.hp1 NA18961.hp1 HG02074.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0003 a0001c0001t0003 a0001c0002t0003	a0001c0001t0003g0210 a0001c0002t0003g0190 a0001c0001t0003g0210 a0001c0002t0003g0190	2	280	0.0071	18	c.237 others(35): Show c.237+2763_237+2764insATATATCTATCTATCTAT	PLPPR5	ENSG00000117598.14	transcript	ENST00000263177.5	protein_coding	1/5			chr1	TogoVar
PLPPR5_chr1_98885245_99009861	99001671	G G	GATAGATA others(11): Show GATAGATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19091.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0231 a0001c0001t0003g0231	1	280	0.0036	18	c.237 others(35): Show c.237+2763_237+2764insATATATATATATATCTAT	PLPPR5	ENSG00000117598.14	transcript	ENST00000263177.5	protein_coding	1/5			chr1	TogoVar
PLPPR5_chr1_98885245_99009861	99001671	G G	GATATATA others(11): Show GATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG01358.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0034	a0001c0001t0034g0277 a0001c0001t0034g0277	1	280	0.0036	18	c.237 others(35): Show c.237+2746_237+2763dupATATATATATATATATAT	PLPPR5	ENSG00000117598.14	transcript	ENST00000263177.5	protein_coding	1/5			chr1	TogoVar
PLRG1_chr4_154530005_154555400	154533394	A A	AAAAAAAA others(11): Show AAAAAAAAAATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0009 a0001c0002t0009	a0001c0002t0009g0006 a0001c0002t0009g0006	1	430	0.0023	18	c.32 others(29): Show c.3290_*3291insATATATATATTTTTTTTT	PLRG1	ENSG00000171566.12	transcript	ENST00000499023.7	protein_coding		1610		chr4	TogoVar
PLS1_chr3_142591393_142718664	142600916	A A	ATATATAT others(11): Show ATATATATATATTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0110 a0001c0001t0002g0110	1	276	0.0036	18	c.-37 others(35): Show c.-37+4408_-37+4409insATATATATATTTTTTTTT	PLS1	ENSG00000120756.13	transcript	ENST00000457734.7	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
PLS1_chr3_142591393_142718664	142630938	A A	AACACACA others(11): Show AACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02922.hp1 HG06807.hp2 HG02630.hp2 HG02922.hp1 HG06807.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0004 a0001c0001t0008 a0003c0005t0012 a0001c0001t0004 a0001c0001t0008 a0003c0005t0012	a0001c0001t0004g0113 a0001c0001t0008g0130 a0003c0005t0012g0133 a0001c0001t0004g0113 a0001c0001t0008g0130 a0003c0005t0012g0133	3	276	0.0109	18	c.-36 others(37): Show c.-36-33246_-36-33229dupCACACACACACACACACA	PLS1	ENSG00000120756.13	transcript	ENST00000457734.7	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
PLVAP_chr19_17346455_17382342	17349152	T T	TTCTCTCT others(11): Show TTCTCTCTCTCTCTCTCTC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19084.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0159 a0001c0001t0003g0159	1	436	0.0023	18	c.32 others(29): Show c.3209_*3210insGAGAGAGAGAGAGAGAGA	PLVAP	ENSG00000130300.9	transcript	ENST00000252590.9	protein_coding		2302		chr19	TogoVar
PLVAP_chr19_17346455_17382342	17382276	A A	AAGAAAGA others(11): Show AAGAAAGAAAGAAAGAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01346.hp1 HG02300.hp1 HG04184.hp2 HG01346.hp1 HG02300.hp1 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0279 a0001c0001t0004g0063 a0001c0001t0004g0064 a0001c0001t0001g0279 a0001c0001t0004g0063 a0001c0001t0004g0064	3	436	0.0069	18	c.-49 others(29): Show c.-4989_-4988insCTTTCTTTCTTTCTTTCT	PLVAP	ENSG00000130300.9	transcript	ENST00000252590.9	protein_coding		4935		chr19	TogoVar
PLVAP_chr19_17346455_17382342	17382280	A A	AAGAAAGA others(11): Show AAGAAAGAAAGAAAGAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00438.hp1 HG04115.hp2 HG00438.hp1 HG04115.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0006c0007 a0001c0001 a0006c0007	a0001c0001t0002 a0006c0007t0002 a0001c0001t0002 a0006c0007t0002	a0001c0001t0002g0132 a0006c0007t0002g0117 a0001c0001t0002g0132 a0006c0007t0002g0117	2	436	0.0046	18	c.-49 others(29): Show c.-4993_-4992insCTTTCTTTCTTTCTTTCT	PLVAP	ENSG00000130300.9	transcript	ENST00000252590.9	protein_coding		4939		chr19	TogoVar
PLXDC1_chr17_39058313_39156637	39102705	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0079 a0001c0001t0027g0079	1	320	0.0031	18	c.811 others(35): Show c.811+3131_811+3148dupGTGTGTGTGTGTGTGTGT	PLXDC1	ENSG00000161381.14	transcript	ENST00000315392.9	protein_coding	7/13			chr17	TogoVar
PLXDC1_chr17_39058313_39156637	39128107	A A	ATATATAT others(11): Show ATATATATACATATATATG	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0243 a0001c0001t0016g0243	1	320	0.0031	18	c.255 others(37): Show c.255+11546_255+11547insCATATATATGTATATATA	PLXDC1	ENSG00000161381.14	transcript	ENST00000315392.9	protein_coding	2/13			chr17	TogoVar
PLXDC1_chr17_39058313_39156637	39128117	A A	ATATATAT others(11): Show ATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01884.hp1 HG02622.hp1 others(4): Show HG01109.hp2 HG01884.hp1 HG02622.hp1 HG02717.hp2 HG02818.hp1 NA19043.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0054 a0001c0001t0003 a0001c0001t0054	a0001c0001t0003g0010 a0001c0001t0003g0011 a0001c0001t0003g0098 others(4): Show a0001c0001t0003g0010 a0001c0001t0003g0011 a0001c0001t0003g0098 a0001c0001t0003g0244 a0001c0001t0003g0246 a0001c0001t0003g0247 a0001c0001t0054g0280	7	320	0.0219	18	c.255 others(37): Show c.255+11536_255+11537insCATATATATATATATATA	PLXDC1	ENSG00000161381.14	transcript	ENST00000315392.9	protein_coding	2/13			chr17	TogoVar
PLXDC1_chr17_39058313_39156637	39128117	A A	ATATATAT others(11): Show ATATATATATATATGTATG	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG02257.hp1 HG03831.hp2 others(2): Show HG00323.hp1 HG02257.hp1 HG03831.hp2 NA19060.hp2 NA19091.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0001t0004 a0001c0001t0010 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0010 a0001c0002t0035 a0002c0003t0006	a0001c0001t0001g0264 a0001c0001t0004g0133 a0001c0001t0010g0137 others(2): Show a0001c0001t0001g0264 a0001c0001t0004g0133 a0001c0001t0010g0137 a0001c0002t0035g0136 a0002c0003t0006g0158	5	320	0.0156	18	c.255 others(37): Show c.255+11536_255+11537insCATACATATATATATATA	PLXDC1	ENSG00000161381.14	transcript	ENST00000315392.9	protein_coding	2/13			chr17	TogoVar
PLXDC1_chr17_39058313_39156637	39153334	G G	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03704.hp1 HG03704.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0021	1	320	0.0031	18	c.-19 others(29): Show c.-1915_-1898dupACACACACACACACACAC	PLXDC1	ENSG00000161381.14	transcript	ENST00000315392.9	protein_coding		1698		chr17	TogoVar
PLXDC2_chr10_19811432_20294856	19883884	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01109.hp1 HG01168.hp1 others(14): Show HG01106.hp1 HG01109.hp1 HG01168.hp1 HG01169.hp1 HG01891.hp1 HG02145.hp1 HG03098.hp2 HG03453.hp1 HG03453.hp2 HG03516.hp1 HG04115.hp1 NA18747.hp2 NA18945.hp1 NA18961.hp2 NA18973.hp1 NA19030.hp1 NA19090.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0005 a0002c0002 others(1): Show a0001c0001 a0001c0005 a0002c0002 a0003c0003	a0001c0001t0004 a0001c0001t0010 a0001c0001t0012 others(12): Show a0001c0001t0004 a0001c0001t0010 a0001c0001t0012 a0001c0001t0015 a0001c0001t0045 a0001c0001t0055 a0001c0001t0094 a0001c0005t0119 a0002c0002t0006 a0002c0002t0007 a0002c0002t0052 a0003c0003t0018 a0003c0003t0079 a0003c0003t0105 a0003c0003t0107	a0001c0001t0004g0128 a0001c0001t0010g0063 a0001c0001t0012g0028 others(14): Show a0001c0001t0004g0128 a0001c0001t0010g0063 a0001c0001t0012g0028 a0001c0001t0012g0176 a0001c0001t0015g0164 a0001c0001t0045g0061 a0001c0001t0055g0024 a0001c0001t0094g0105 a0001c0005t0119g0042 a0002c0002t0006g0012 a0002c0002t0006g0075 a0002c0002t0007g0058 a0002c0002t0052g0174 a0003c0003t0018g0091 a0003c0003t0079g0090 a0003c0003t0105g0087 a0003c0003t0107g0070	17	180	0.0944	18	c.112 others(37): Show c.112+66703_112+66720dupTTTTTTTTTTTTTTTTTT	PLXDC2	ENSG00000120594.17	transcript	ENST00000377252.5	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr10	TogoVar
PLXDC2_chr10_19811432_20294856	19937544	G G	GTATATAT others(11): Show GTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02559.hp2 NA19030.hp2 HG02559.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0071 a0001c0001t0001 a0001c0001t0071	a0001c0001t0001g0133 a0001c0001t0071g0074 a0001c0001t0001g0133 a0001c0001t0071g0074	2	180	0.0111	18	c.113 others(37): Show c.113-64209_113-64192dupATATATATATATATATAT	PLXDC2	ENSG00000120594.17	transcript	ENST00000377252.5	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr10	TogoVar
PLXDC2_chr10_19811432_20294856	20098357	A A	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0077 a0004c0004t0077	a0004c0004t0077g0079 a0004c0004t0077g0079	1	180	0.0056	18	c.541 others(37): Show c.541+30128_541+30145dupGTGTGTGTGTGTGTGTGT	PLXDC2	ENSG00000120594.17	transcript	ENST00000377252.5	protein_coding	4/13		INFO_REALIGN_3_PRIME	chr10	TogoVar

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