Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SNX10_chr7_26286862_26379383	26325306	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00558.hp2 HG00621.hp2 others(14): Show HG00099.hp1 HG00558.hp2 HG00621.hp2 HG00735.hp2 HG01167.hp1 HG01884.hp1 HG02055.hp2 HG02135.hp1 HG02486.hp2 HG02738.hp1 HG03239.hp1 HG03471.hp1 HG03540.hp1 NA18952.hp2 NA19009.hp2 NA19070.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0012 a0001c0001t0013 a0001c0001t0017	a0001c0001t0001g0007 a0001c0001t0001g0104 a0001c0001t0001g0149 others(14): Show a0001c0001t0001g0007 a0001c0001t0001g0104 a0001c0001t0001g0149 a0001c0001t0001g0162 a0001c0001t0001g0331 a0001c0001t0001g0350 a0001c0001t0001g0355 a0001c0001t0001g0356 a0001c0001t0001g0359 a0001c0001t0002g0090 a0001c0001t0002g0101 a0001c0001t0003g0269 a0001c0001t0012g0091 a0001c0001t0012g0092 a0001c0001t0013g0372 a0001c0001t0017g0353 a0001c0001t0017g0354	17	390	0.0436	18	c.-23 others(37): Show c.-23-21109_-23-21092dupATATATATATATATATAT	SNX10	ENSG00000086300.17	transcript	ENST00000338523.9	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr7	TogoVar
SNX10_chr7_26286862_26379383	26358805	G G	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG01071.hp1 HG02572.hp1 others(3): Show HG00438.hp2 HG01071.hp1 HG02572.hp1 HG03098.hp1 NA18947.hp1 NA18973.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0365 a0001c0001t0001g0367 a0001c0001t0004g0117 others(3): Show a0001c0001t0001g0365 a0001c0001t0001g0367 a0001c0001t0004g0117 a0001c0001t0004g0207 a0001c0001t0004g0211 a0001c0001t0004g0214	6	390	0.0154	18	c.25- others(33): Show c.25-2168_25-2151dupTTTTTTTTTTTTTTTTTT	SNX10	ENSG00000086300.17	transcript	ENST00000338523.9	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr7	TogoVar
SNX11_chr17_48102766_48128601	48105324	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp2 HG03209.hp1 HG01069.hp2 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0016	2	416	0.0048	18	c.-25 others(29): Show c.-2528_-2527insTTTTTTTTTTTTTTTTTT	SNX11	ENSG00000002919.15	transcript	ENST00000359238.7	protein_coding		2441		chr17	TogoVar
SNX12_chrX_71054247_71073334	71070675	A A	ATACACTA others(11): Show ATACACTAGATCGCGTGTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18967.hp1 NA18967.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0032 a0001c0001t0002g0032	1	309	0.0032	18	c.-23 others(29): Show c.-2370_-2369insAACACGCGATCTAGTGTA	SNX12	ENSG00000147164.12	transcript	ENST00000374274.8	protein_coding		2342		chrX	TogoVar
SNX13_chr7_17785761_17945494	17801009	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19004.hp1 NA19004.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0200 a0001c0002t0001g0200	1	338	0.0030	18	c.229 others(35): Show c.2298+561_2298+578dupATATATATATATATATAT	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	22/25			chr7	TogoVar
SNX13_chr7_17785761_17945494	17801018	A A	ATATATAT others(11): Show ATATATATATATATATACG	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0192 a0001c0001t0012g0192	1	338	0.0030	18	c.229 others(35): Show c.2298+569_2298+570insCGTATATATATATATATA	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	22/25			chr7	TogoVar
SNX13_chr7_17785761_17945494	17805211	T T	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG02280.hp2 HG03486.hp2 HG01074.hp1 HG02280.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0001 a0001c0001t0008 a0001c0007t0025 a0001c0001t0001 a0001c0001t0008 a0001c0007t0025	a0001c0001t0001g0229 a0001c0001t0008g0004 a0001c0007t0025g0003 a0001c0001t0001g0229 a0001c0001t0008g0004 a0001c0007t0025g0003	3	338	0.0089	18	c.206 others(37): Show c.2065-1649_2065-1632dupCACACACACACACACACA	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	20/25			chr7	TogoVar
SNX13_chr7_17785761_17945494	17805250	T T	TGTGCGTG others(11): Show TGTGCGTGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG02273.hp2 NA18945.hp2 HG00741.hp2 HG02273.hp2 NA18945.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0009 a0001c0002t0006 a0001c0002t0009	a0001c0002t0006g0266 a0001c0002t0009g0263 a0001c0002t0009g0331 a0001c0002t0006g0266 a0001c0002t0009g0263 a0001c0002t0009g0331	3	338	0.0089	18	c.206 others(37): Show c.2065-1671_2065-1670insGCGCGCGCGCGCACGCAC	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	20/25			chr7	TogoVar
SNX13_chr7_17785761_17945494	17805250	T T	TGTGTGTG others(11): Show TGTGTGTGTGTGTGTGTGC	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0145 a0001c0001t0019g0145	1	338	0.0030	18	c.206 others(37): Show c.2065-1671_2065-1670insGCACACACACACACACAC	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	20/25			chr7	TogoVar
SNX13_chr7_17785761_17945494	17841553	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03491.hp1 HG03492.hp2 HG03491.hp1 HG03492.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0026 a0001c0001t0001g0027	2	338	0.0059	18	c.116 others(37): Show c.1166-1571_1166-1554dupGTGTGTGTGTGTGTGTGT	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	12/25			chr7	TogoVar
SNX15_chr11_65022439_65045572	65025779	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp2 HG01884.hp1 HG02486.hp1 others(3): Show HG00642.hp2 HG01884.hp1 HG02486.hp1 HG03209.hp2 NA18955.hp1 NA19043.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0007 others(1): Show a0001c0001 a0001c0002 a0002c0007 a0003c0004	a0001c0001t0004 a0001c0002t0004 a0002c0007t0007 others(1): Show a0001c0001t0004 a0001c0002t0004 a0002c0007t0007 a0003c0004t0003	a0001c0001t0004g0028 a0001c0001t0004g0128 a0001c0002t0004g0145 others(3): Show a0001c0001t0004g0028 a0001c0001t0004g0128 a0001c0002t0004g0145 a0002c0007t0007g0049 a0003c0004t0003g0005 a0003c0004t0003g0083	6	338	0.0178	18	c.-17 others(29): Show c.-1759_-1758insTTTTTTTTTTTTTTTTTT	SNX15	ENSG00000110025.13	transcript	ENST00000377244.8	protein_coding		1659		chr11	TogoVar
SNX15_chr11_65022439_65045572	65039029	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03209.hp2 NA18906.hp1 others(1): Show HG03041.hp2 HG03209.hp2 NA18906.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0002t0004 a0001c0001t0004 a0001c0002t0004	a0001c0001t0004g0028 a0001c0001t0004g0065 a0001c0002t0004g0028 a0001c0001t0004g0028 a0001c0001t0004g0065 a0001c0002t0004g0028	4	338	0.0118	18	c.922 others(33): Show c.922+202_922+219dupTTTTTTTTTTTTTTTTTT	SNX15	ENSG00000110025.13	transcript	ENST00000377244.8	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr11	TogoVar
SNX16_chr8_81794583_81847185	81822964	A A	ATATATAT others(11): Show ATATATATATATGTATATG	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01106.hp1 HG02055.hp2 others(9): Show HG00733.hp2 HG01106.hp1 HG02055.hp2 HG02280.hp1 HG02717.hp2 HG02723.hp2 HG03490.hp1 HG03669.hp1 HG03710.hp2 HG03834.hp1 HG06807.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0006 a0001c0001t0015 a0001c0001t0005 a0001c0001t0006 a0001c0001t0015	a0001c0001t0005g0030 a0001c0001t0005g0158 a0001c0001t0005g0159 others(8): Show a0001c0001t0005g0030 a0001c0001t0005g0158 a0001c0001t0005g0159 a0001c0001t0005g0160 a0001c0001t0005g0163 a0001c0001t0005g0194 a0001c0001t0006g0185 a0001c0001t0006g0186 a0001c0001t0006g0189 a0001c0001t0006g0190 a0001c0001t0015g0198	12	306	0.0392	18	c.611 others(33): Show c.611+827_611+828insCATATACATATATATATA	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding	4/7			chr8	TogoVar
SNX19_chr11_130861250_130921479	130905207	C C	CCTGGAAG others(11): Show CCTGGAAGGCAAAATTGCT	intron_variant intron_variant	MODIFIER	HG03704.hp1 HG03704.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0247 a0001c0001t0006g0247	1	414	0.0024	18	c.244 others(35): Show c.2443+728_2443+745dupAGCAATTTTGCCTTCCAG	SNX19	ENSG00000120451.11	transcript	ENST00000265909.9	protein_coding	7/10			chr11	TogoVar
SNX1_chr15_64090982_64149231	64124147	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02109.hp1 HG02559.hp1 others(4): Show HG02055.hp1 HG02109.hp1 HG02559.hp1 HG02723.hp2 HG02895.hp2 NA18957.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0013 a0001c0001t0027 a0001c0001t0080 others(3): Show a0001c0001t0013 a0001c0001t0027 a0001c0001t0080 a0001c0002t0015 a0001c0002t0073 a0001c0002t0083	a0001c0001t0013g0137 a0001c0001t0027g0079 a0001c0001t0027g0084 others(4): Show a0001c0001t0013g0137 a0001c0001t0027g0079 a0001c0001t0027g0084 a0001c0001t0080g0165 a0001c0002t0015g0218 a0001c0002t0073g0201 a0001c0002t0083g0096	7	270	0.0259	18	c.510 others(33): Show c.510+616_510+633dupATATATATATATATATAT	SNX1	ENSG00000028528.15	transcript	ENST00000559844.6	protein_coding	5/14		INFO_REALIGN_3_PRIME	chr15	TogoVar
SNX25_chr4_185204598_185368966	185212491	G G	GTGTGTGT others(11): Show GTGTGTGTGTTTTTGTTTT	intron_variant intron_variant	MODIFIER	NA18961.hp1 NA18963.hp1 NA18961.hp1 NA18963.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0181 a0001c0001t0001g0182	2	276	0.0073	18	c.429 others(35): Show c.429+2237_429+2238insGTGTGTGTTTTTGTTTTT	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185300840	G G	GACACACA others(11): Show GACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG01934.hp1 HG03540.hp1 others(2): Show HG00408.hp1 HG01934.hp1 HG03540.hp1 HG03834.hp2 NA19064.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0001c0001t0001 a0001c0001t0002 a0002c0002t0001	a0001c0001t0001g0013 a0001c0001t0001g0022 a0001c0001t0001g0058 others(2): Show a0001c0001t0001g0013 a0001c0001t0001g0022 a0001c0001t0001g0058 a0001c0001t0002g0154 a0002c0002t0001g0255	5	276	0.0181	18	c.116 others(37): Show c.1163-9777_1163-9760dupCACACACACACACACACA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	6/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185360930	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG03195.hp1 HG02145.hp2 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0196 a0001c0001t0001g0220 a0001c0001t0001g0196 a0001c0001t0001g0220	2	276	0.0073	18	c.265 others(35): Show c.2652-988_2652-971dupTATATATATATATATATA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	16/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX27_chr1_151607050_151704080	151641598	G G	GATATATA others(11): Show GATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01516.hp2 HG02040.hp1 others(12): Show HG01255.hp1 HG01516.hp2 HG02040.hp1 HG02071.hp1 HG02074.hp1 HG02451.hp2 HG02698.hp1 HG03098.hp2 NA18940.hp2 NA18950.hp2 NA18972.hp2 NA18973.hp1 NA18980.hp2 NA19067.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0015 a0001c0001t0017 others(10): Show a0001c0001t0002 a0001c0001t0015 a0001c0001t0017 a0001c0001t0018 a0001c0001t0062 a0001c0001t0064 a0001c0001t0074 a0001c0001t0116 a0001c0001t0134 a0001c0001t0135 a0001c0001t0140 a0001c0001t0142 a0001c0001t0166	a0001c0001t0002g0038 a0001c0001t0015g0289 a0001c0001t0015g0296 others(12): Show a0001c0001t0002g0038 a0001c0001t0015g0289 a0001c0001t0015g0296 a0001c0001t0017g0297 a0001c0001t0017g0323 a0001c0001t0018g0298 a0001c0001t0062g0095 a0001c0001t0064g0047 a0001c0001t0074g0146 a0001c0001t0116g0327 a0001c0001t0134g0309 a0001c0001t0135g0330 a0001c0001t0140g0093 a0001c0001t0142g0023 a0001c0001t0166g0034	15	366	0.0410	18	c.543 others(35): Show c.543+2494_543+2511dupATATATATATATATATAT	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151652205	G G	GGGGAGAG others(11): Show GGGGAGAGGGAGAGGGAGA	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01257.hp1 HG01258.hp2 others(6): Show HG01074.hp1 HG01257.hp1 HG01258.hp2 HG01433.hp1 HG02004.hp2 HG02970.hp1 NA18980.hp1 NA18997.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0009 a0001c0001t0034 others(4): Show a0001c0001t0006 a0001c0001t0009 a0001c0001t0034 a0001c0001t0046 a0001c0001t0047 a0001c0001t0077 a0001c0001t0098	a0001c0001t0006g0188 a0001c0001t0009g0202 a0001c0001t0034g0241 others(6): Show a0001c0001t0006g0188 a0001c0001t0009g0202 a0001c0001t0034g0241 a0001c0001t0046g0190 a0001c0001t0046g0192 a0001c0001t0047g0191 a0001c0001t0047g0193 a0001c0001t0077g0200 a0001c0001t0098g0187	9	366	0.0246	18	c.544 others(35): Show c.544-6005_544-5988dupGGGAGAGGGAGAGGGAGA	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX29_chr16_11971734_12579287	11979275	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02630.hp2 HG02257.hp2 HG02630.hp2	a0001 a0001	a0001c0004 a0001c0013 a0001c0004 a0001c0013	a0001c0004t0079 a0001c0013t0094 a0001c0004t0079 a0001c0013t0094	a0001c0004t0079g0070 a0001c0013t0094g0126 a0001c0004t0079g0070 a0001c0013t0094g0126	2	176	0.0114	18	c.7+2 others(31): Show c.7+2469_7+2486dupAAAAAAAAAAAAAAAAAA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	1/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013498	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0157 a0001c0001t0004g0157	1	176	0.0057	18	c.122 others(37): Show c.122+10456_122+10457insTATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013500	A A	AAAAAAAA others(11): Show AAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	NA19009.hp2 NA19009.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0103 a0001c0003t0103	a0001c0003t0103g0079 a0001c0003t0103g0079	1	176	0.0057	18	c.122 others(37): Show c.122+10458_122+10459insAAAAAAAATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013500	A A	AAAAAATA others(11): Show AAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18950.hp1 NA18950.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0015 a0001c0001t0042g0015	1	176	0.0057	18	c.122 others(37): Show c.122+10458_122+10459insAAAATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013500	A A	AAAATATA others(11): Show AAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG03491.hp2 NA19060.hp1 HG01496.hp2 HG03491.hp2 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0012 a0001c0001t0110 a0001c0004t0095 a0001c0001t0012 a0001c0001t0110 a0001c0004t0095	a0001c0001t0012g0056 a0001c0001t0110g0162 a0001c0004t0095g0151 a0001c0001t0012g0056 a0001c0001t0110g0162 a0001c0004t0095g0151	3	176	0.0171	18	c.122 others(37): Show c.122+10458_122+10459insAATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013500	A A	AACATATA others(11): Show AACATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0067 a0001c0002t0067	a0001c0002t0067g0059 a0001c0002t0067g0059	1	176	0.0057	18	c.122 others(37): Show c.122+10458_122+10459insCATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013518	T T	TATATATA others(11): Show TATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG00673.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0050 a0001c0001t0050	a0001c0001t0050g0140 a0001c0001t0050g0140	1	176	0.0057	18	c.122 others(37): Show c.122+10492_122+10493insCATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12045610	A A	ATATTATT others(11): Show ATATTATTATTATTATTAT	intron_variant intron_variant	MODIFIER	HG02886.hp2 NA21309.hp1 HG02886.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0027 a0001c0001t0017 a0001c0001t0027	a0001c0001t0017g0025 a0001c0001t0027g0082 a0001c0001t0017g0025 a0001c0001t0027g0082	2	176	0.0114	18	c.429 others(33): Show c.429-754_429-737dupATTATTATTATTATTATT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	5/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12118313	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0069 a0001c0002t0069	a0001c0002t0069g0017 a0001c0002t0069g0017	1	176	0.0057	18	c.140 others(37): Show c.1403-8314_1403-8297dupTTTTTTTTTTTTTTTTTT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	11/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12179870	G G	GTTGGTAG others(11): Show GTTGGTAGTAGTCTAATTT	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00738.hp1 HG00741.hp2 others(30): Show HG00558.hp2 HG00738.hp1 HG00741.hp2 HG01074.hp2 HG01099.hp1 HG01109.hp2 HG01358.hp1 HG01891.hp2 HG01981.hp2 HG01993.hp1 HG02015.hp2 HG02257.hp2 HG02630.hp2 HG02896.hp1 HG02897.hp1 HG02922.hp2 HG03017.hp1 HG03098.hp1 HG03490.hp1 HG03491.hp2 HG03704.hp2 HG03834.hp2 HG04115.hp1 HG06807.hp1 NA18906.hp1 NA18942.hp2 NA18979.hp1 NA18986.hp2 NA19009.hp2 NA19060.hp1 NA19085.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0013 a0002c0005 a0004c0011	a0001c0001t0001 a0001c0001t0008 a0001c0001t0015 others(24): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0015 a0001c0001t0048 a0001c0001t0061 a0001c0001t0102 a0001c0001t0110 a0001c0002t0024 a0001c0002t0081 a0001c0002t0093 a0001c0003t0002 a0001c0003t0011 a0001c0003t0016 a0001c0003t0025 a0001c0003t0026 a0001c0003t0062 a0001c0003t0103 a0001c0004t0005 a0001c0004t0020 a0001c0004t0023 a0001c0004t0072 a0001c0004t0079 a0001c0004t0083 a0001c0004t0095 a0001c0013t0094 a0002c0005t0045 a0004c0011t0009	a0001c0001t0001g0153 a0001c0001t0001g0163 a0001c0001t0008g0137 others(30): Show a0001c0001t0001g0153 a0001c0001t0001g0163 a0001c0001t0008g0137 a0001c0001t0015g0085 a0001c0001t0048g0052 a0001c0001t0061g0173 a0001c0001t0102g0001 a0001c0001t0110g0162 a0001c0002t0024g0128 a0001c0002t0081g0021 a0001c0002t0093g0086 a0001c0003t0002g0058 a0001c0003t0002g0077 a0001c0003t0002g0097 a0001c0003t0011g0098 a0001c0003t0016g0005 a0001c0003t0025g0010 a0001c0003t0025g0083 a0001c0003t0026g0012 a0001c0003t0062g0075 a0001c0003t0103g0079 a0001c0004t0005g0115 a0001c0004t0005g0171 a0001c0004t0020g0038 a0001c0004t0020g0055 a0001c0004t0023g0172 a0001c0004t0072g0114 a0001c0004t0079g0070 a0001c0004t0083g0068 a0001c0004t0095g0151 a0001c0013t0094g0126 a0002c0005t0045g0088 a0004c0011t0009g0116	33	176	0.1875	18	c.159 others(39): Show c.1596-19730_1596-19729insTGGTAGTAGTCTAATTTT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	13/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12179870	G G	GTTGGTGG others(11): Show GTTGGTGGTAGTCTAATTT	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01346.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0098 a0001c0004t0098	a0001c0004t0098g0045 a0001c0004t0098g0045	1	176	0.0057	18	c.159 others(39): Show c.1596-19730_1596-19729insTGGTGGTAGTCTAATTTT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	13/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12339370	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18990.hp1 NA18990.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0075 a0001c0002t0075	a0001c0002t0075g0129 a0001c0002t0075g0129	1	176	0.0057	18	c.178 others(39): Show c.1783-16786_1783-16769dupAAAAAAAAAAAAAAAAAA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	15/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12380952	C C	CCATCCAT others(11): Show CCATCCATCCATCCACCCA	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02257.hp2 HG03486.hp2 HG01261.hp2 HG02257.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0013 a0001c0001 a0001c0002 a0001c0013	a0001c0001t0002 a0001c0002t0024 a0001c0013t0094 a0001c0001t0002 a0001c0002t0024 a0001c0013t0094	a0001c0001t0002g0169 a0001c0002t0024g0050 a0001c0013t0094g0126 a0001c0001t0002g0169 a0001c0002t0024g0050 a0001c0013t0094g0126	3	176	0.0171	18	c.190 others(39): Show c.1900-17493_1900-17492insATCCATCCATCCACCCAC	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	16/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12462017	A A	ATATATAT others(11): Show ATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG03834.hp2 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0153 a0001c0001t0001g0153	1	176	0.0057	18	c.203 others(39): Show c.2038-15702_2038-15701insTATATATATATATATATG	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20			chr16	TogoVar
SNX29_chr16_11971734_12579287	12464229	C C	CGTGTGTG others(11): Show CGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02040.hp2 HG02896.hp2 others(10): Show HG00639.hp2 HG02040.hp2 HG02896.hp2 HG03490.hp2 NA18942.hp1 NA18979.hp1 NA18986.hp1 NA18990.hp2 NA19009.hp1 NA19070.hp2 NA19085.hp2 NA19090.hp1 NA21309.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0007c0016	a0001c0001t0027 a0001c0002t0003 a0001c0002t0005 others(10): Show a0001c0001t0027 a0001c0002t0003 a0001c0002t0005 a0001c0002t0082 a0001c0002t0090 a0001c0003t0025 a0001c0003t0026 a0001c0004t0003 a0001c0004t0022 a0001c0004t0084 a0001c0004t0085 a0001c0004t0105 a0007c0016t0108	a0001c0001t0027g0082 a0001c0002t0003g0152 a0001c0002t0005g0168 others(10): Show a0001c0001t0027g0082 a0001c0002t0003g0152 a0001c0002t0005g0168 a0001c0002t0082g0006 a0001c0002t0090g0170 a0001c0003t0025g0010 a0001c0003t0026g0012 a0001c0004t0003g0161 a0001c0004t0022g0048 a0001c0004t0084g0135 a0001c0004t0085g0023 a0001c0004t0105g0042 a0007c0016t0108g0049	13	176	0.0739	18	c.203 others(39): Show c.2038-13474_2038-13473insGTGTGTGTGTGTGTGTGT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12476423	T T	TATATATA others(11): Show TATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00741.hp2 HG00738.hp1 HG00741.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0077 a0001c0003t0002g0097 a0001c0003t0002g0077 a0001c0003t0002g0097	2	176	0.0114	18	c.203 others(37): Show c.2038-1279_2038-1278insCATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12512369	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02897.hp1 HG02896.hp1 HG02897.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0020 a0001c0004t0020	a0001c0004t0020g0038 a0001c0004t0020g0055 a0001c0004t0020g0038 a0001c0004t0020g0055	2	176	0.0114	18	c.217 others(39): Show c.2179-12301_2179-12284dupTATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	19/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX2_chr5_122770080_122839543	122789474	G G	GACACACA others(11): Show GACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19011.hp1 NA19082.hp1 NA19011.hp1 NA19082.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0009 a0001c0002t0006 a0001c0002t0009	a0001c0002t0006g0227 a0001c0002t0009g0232 a0001c0002t0006g0227 a0001c0002t0009g0232	2	372	0.0054	18	c.109 others(35): Show c.109-5779_109-5762dupACACACACACACACACAC	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	1/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX2_chr5_122770080_122839543	122806142	G G	GCACGCGC others(11): Show GCACGCGCACACACACACA	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0171 a0001c0001t0013g0171	1	372	0.0027	18	c.644 others(35): Show c.644-2132_644-2131insGCGCACACACACACACAC	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX2_chr5_122770080_122839543	122814753	T T	TTTTTTTT others(11): Show TTTTTTTTGTTTTTTTTTG	intron_variant intron_variant	MODIFIER	NA18995.hp2 NA18995.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0030 a0001c0001t0048g0030	1	372	0.0027	18	c.723 others(35): Show c.723-1129_723-1128insTTTGTTTTTTTGTTTTTT	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	7/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX2_chr5_122770080_122839543	122814753	T T	TTTTTTTT others(11): Show TTTTTTTTTGTTTTTTTTG	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0095 a0001c0001t0001g0095	1	372	0.0027	18	c.723 others(35): Show c.723-1136_723-1135insTGTTTTTTTTGTTTTTTT	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	7/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX30_chr9_112745760_112879987	112775542	T T	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA19063.hp2 NA19065.hp2 NA19063.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0005 a0001c0001t0003 a0001c0001t0005	a0001c0001t0003g0288 a0001c0001t0005g0060 a0001c0001t0003g0288 a0001c0001t0005g0060	2	338	0.0059	18	c.156 others(37): Show c.156+24413_156+24430dupGTGTGTGTGTGTGTGTGT	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX30_chr9_112745760_112879987	112795765	T T	TCTCACAC others(11): Show TCTCACACACACACACACA	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG01346.hp2 HG00544.hp1 HG01346.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0247 a0001c0001t0003g0271 a0001c0001t0003g0247 a0001c0001t0003g0271	2	338	0.0059	18	c.157 others(35): Show c.157-9010_157-9009insTCACACACACACACACAC	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX30_chr9_112745760_112879987	112817401	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG01106.hp1 HG02083.hp1 others(5): Show HG00423.hp2 HG01106.hp1 HG02083.hp1 NA18965.hp1 NA18974.hp1 NA18975.hp1 NA18993.hp2 NA19063.hp1	a0001 a0006 a0001 a0006	a0001c0001 a0001c0002 a0006c0009 a0001c0001 a0001c0002 a0006c0009	a0001c0001t0001 a0001c0001t0017 a0001c0002t0001 others(3): Show a0001c0001t0001 a0001c0001t0017 a0001c0002t0001 a0001c0002t0013 a0001c0002t0026 a0006c0009t0001	a0001c0001t0001g0152 a0001c0001t0017g0235 a0001c0002t0001g0028 others(5): Show a0001c0001t0001g0152 a0001c0001t0017g0235 a0001c0002t0001g0028 a0001c0002t0001g0029 a0001c0002t0001g0032 a0001c0002t0013g0211 a0001c0002t0026g0209 a0006c0009t0001g0130	8	338	0.0237	18	c.349 others(33): Show c.349-291_349-274dupTTTTTTTTTTTTTTTTTT	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX30_chr9_112745760_112879987	112834882	A A	ACACACAC others(11): Show ACACACACACACACACACC	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG02080.hp2 HG02615.hp1 others(1): Show HG00621.hp2 HG02080.hp2 HG02615.hp1 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005	a0001c0001t0001g0063 a0001c0001t0002g0039 a0001c0001t0003g0192 others(1): Show a0001c0001t0001g0063 a0001c0001t0002g0039 a0001c0001t0003g0192 a0001c0001t0005g0060	4	338	0.0118	18	c.619 others(35): Show c.619-1331_619-1330insACACACACACACACACCC	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX30_chr9_112745760_112879987	112865661	A A	ATATATAT others(11): Show ATATATATATATGTGTGTG	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0326 a0001c0002t0007g0326	1	338	0.0030	18	c.125 others(37): Show c.1254+1263_1254+1264insATATATATATGTGTGTGT	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX30_chr9_112745760_112879987	112865661	A A	ATATATAT others(11): Show ATATATATATGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0321 a0001c0001t0012g0321	1	338	0.0030	18	c.125 others(37): Show c.1254+1263_1254+1264insATATATATGTGTGTGTGT	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX31_chr8_100567889_100654665	100641625	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0004 a0004c0004t0004	a0004c0004t0004g0156 a0004c0004t0004g0156	1	304	0.0033	18	c.142 others(35): Show c.142-5632_142-5615dupATATATATATATATATAT	SNX31	ENSG00000174226.9	transcript	ENST00000311812.7	protein_coding	2/13			chr8	TogoVar
SNX32_chr11_65828963_65858701	65839215	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG02258.hp1 HG02572.hp1 others(4): Show HG01255.hp2 HG02258.hp1 HG02572.hp1 HG03041.hp1 HG03239.hp2 HG03654.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0030 a0001c0001t0001g0060 a0001c0001t0001g0094 others(3): Show a0001c0001t0001g0030 a0001c0001t0001g0060 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097	7	390	0.0180	18	c.36+ others(33): Show c.36+5121_36+5122insTTTTTTTTTTTTTTTTTT	SNX32	ENSG00000172803.18	transcript	ENST00000308342.7	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr11	TogoVar
SNX32_chr11_65828963_65858701	65839223	G G	GTTTTGTT others(11): Show GTTTTGTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03942.hp2 HG03942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0063 a0001c0001t0001g0063	1	390	0.0026	18	c.36+ others(33): Show c.36+5123_36+5124insTTTGTTTTTTTTTTTTTT	SNX32	ENSG00000172803.18	transcript	ENST00000308342.7	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr11	TogoVar

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