Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZWILCH_chr15_66500326_66555130	66544759	T T	TGTGTGTG others(12): Show TGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02056.hp2 HG02056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0052 a0001c0001t0001g0052	1	410	0.0024	19	c.168 others(38): Show c.1688-1832_1688-1831insGTGTGTGTGTGTGTGTGTG		ZWILCH	ENSG00000174442.12	transcript	ENST00000307897.10	protein_coding	17/18						chr15	TogoVar
	ZXDC_chr3_126432601_126480891	126441654	A A	AGGCAGGG others(12): Show AGGCAGGGGGTGCTGCGATG	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01346.hp2	a0001 a0001	a0001c0019 a0001c0019	a0001c0019t0001 a0001c0019t0001	a0001c0019t0001g0148 a0001c0019t0001g0148	1	390	0.0026	19	c.239 others(35): Show c.2394+92_2394+110dupCATCGCAGCACCCCCTGCC		ZXDC	ENSG00000070476.15	transcript	ENST00000389709.8	protein_coding	8/9						chr3	TogoVar
	ZYG11A_chr1_52837760_52899998	52883942	T T	TGATCATA others(12): Show TGATCATAGCTCACTGCCGC	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02257.hp1 HG02965.hp2 others(2): Show HG02055.hp2 HG02257.hp1 HG02965.hp2 HG03139.hp1 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 others(2): Show a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0086 a0001c0001t0001g0161	5	290	0.0172	19	c.194 others(38): Show c.1945-1890_1945-1872dupGATCATAGCTCACTGCCGC		ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	11/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52773627	A A	ATATATAT others(12): Show ATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02074.hp2 NA18944.hp1 HG02074.hp2 NA18944.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0007 a0001c0001t0004 a0001c0001t0007	a0001c0001t0004g0032 a0001c0001t0007g0112 a0001c0001t0004g0032 a0001c0001t0007g0112	2	352	0.0057	19	c.951 others(36): Show c.951+1854_951+1855insATATATATATATATATATT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52773627	A A	ATATATAT others(12): Show ATATATATATATATATATTT	intron_variant intron_variant	MODIFIER	NA18612.hp2 NA18612.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0058 a0001c0001t0009g0058	1	352	0.0028	19	c.951 others(36): Show c.951+1854_951+1855insATATATATATATATATTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52773627	A A	ATATATAT others(12): Show ATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	HG01071.hp2 NA18988.hp2 NA18992.hp1 HG01071.hp2 NA18988.hp2 NA18992.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0007 a0001c0001t0036 a0001c0001t0004 a0001c0001t0007 a0001c0001t0036	a0001c0001t0004g0019 a0001c0001t0007g0108 a0001c0001t0036g0012 a0001c0001t0004g0019 a0001c0001t0007g0108 a0001c0001t0036g0012	3	352	0.0085	19	c.951 others(36): Show c.951+1854_951+1855insATATATATATATATTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52773627	A A	ATATATAT others(12): Show ATATATATATATATTTTTTT	intron_variant intron_variant	MODIFIER	HG02083.hp1 HG03139.hp1 NA18939.hp2 HG02083.hp1 HG03139.hp1 NA18939.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0077 a0001c0001t0009 a0001c0001t0077	a0001c0001t0009g0050 a0001c0001t0009g0054 a0001c0001t0077g0340 a0001c0001t0009g0050 a0001c0001t0009g0054 a0001c0001t0077g0340	3	352	0.0085	19	c.951 others(36): Show c.951+1854_951+1855insATATATATATATTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52773627	A A	ATATATAT others(12): Show ATATATATATATTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0016 a0001c0001t0016g0016	1	352	0.0028	19	c.951 others(36): Show c.951+1854_951+1855insATATATATATTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52773628	T T	TATATATA others(12): Show TATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0061 a0001c0001t0061	a0001c0001t0061g0160 a0001c0001t0061g0160	1	352	0.0028	19	c.951 others(36): Show c.951+1854_951+1855insATATATATATATATATATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13						chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52793901	T T	TTCCTTCC others(12): Show TTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0156 a0001c0001t0011g0156	1	352	0.0028	19	c.133 others(38): Show c.1335-2390_1335-2389insCCTTCCTTCCTTCCTTCCT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	6/13					INFO_REALIGN_3_PRIME	chr1	TogoVar