Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff genename

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRTM3_chr10_66921036_67106551	67105235	T T	TGATAGAT others(13): Show TGATAGATAGATAGATAGATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp1 HG01884.hp2 HG02129.hp2 others(21): Show HG01884.hp1 HG01884.hp2 HG02129.hp2 HG02145.hp1 HG02257.hp2 HG03041.hp2 HG03130.hp2 HG03471.hp1 HG03654.hp1 NA18612.hp1 NA18747.hp2 NA18906.hp1 NA18942.hp2 NA18959.hp1 NA18964.hp2 NA18970.hp1 NA18992.hp1 NA18999.hp2 NA19004.hp1 NA19060.hp1 NA19076.hp2 NA19080.hp1 NA20752.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0017 a0001c0001t0001 a0001c0001t0003 a0001c0001t0017	a0001c0001t0001g0037 a0001c0001t0001g0052 a0001c0001t0001g0053 others(21): Show a0001c0001t0001g0037 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0086 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0132 a0001c0001t0001g0138 a0001c0001t0001g0162 a0001c0001t0001g0166 a0001c0001t0001g0181 a0001c0001t0001g0190 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0206 a0001c0001t0001g0214 a0001c0001t0001g0224 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0279 a0001c0001t0003g0245 a0001c0001t0003g0267 a0001c0001t0017g0002	24	294	0.0816	20	c.74 others(31): Show c.7439_*7440insGATAGATAGATAGATAGATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding		3685		chr10	TogoVar
LRRTM4_chr2_76742685_77527376	76812673	C C	CTCTTTCT others(13): Show CTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02622.hp1 HG02723.hp2 others(1): Show HG02486.hp1 HG02622.hp1 HG02723.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0064 a0001c0001t0001g0096 others(1): Show a0001c0001t0001g0017 a0001c0001t0001g0064 a0001c0001t0001g0096 a0001c0001t0001g0107	4	128	0.0313	20	c.155 others(41): Show c.1552-63777_1552-63758dupAAGAAAGAAAGAAAGAAAGA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76873506	G G	GTGTATAT others(13): Show GTGTATATATATATATACATA	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG02738.hp1 HG03704.hp2 HG01346.hp1 HG02738.hp1 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0003 a0001c0001t0001g0065 a0001c0001t0002g0077 a0001c0001t0001g0003 a0001c0001t0001g0065 a0001c0001t0002g0077	3	128	0.0234	20	c.155 others(43): Show c.1552-124591_1552-124590insTATGTATATATATATATACA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76873506	G G	GTGTATAT others(13): Show GTGTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02523.hp1 HG02622.hp2 HG02523.hp1 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0046 a0001c0001t0006g0034 a0001c0001t0001g0046 a0001c0001t0006g0034	2	128	0.0156	20	c.155 others(43): Show c.1552-124591_1552-124590insTATATATATATATATATACA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76913543	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0104 a0001c0001t0001g0104	1	128	0.0078	20	c.155 others(43): Show c.1552-164628_1552-164627insAAAAAAAAAAAAAAAAAAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76942674	A A	ATGTGTGT others(13): Show ATGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG03453.hp2 HG03579.hp1 HG02486.hp1 HG03453.hp2 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0017 a0001c0001t0003g0109 a0001c0001t0003g0112 a0001c0001t0001g0017 a0001c0001t0003g0109 a0001c0001t0003g0112	3	128	0.0234	20	c.155 others(43): Show c.1552-193759_1552-193758insCACACACACACACACACACA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76942676	C C	CTGTGTGT others(13): Show CTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00621.hp1 HG01109.hp2 others(3): Show HG00438.hp2 HG00621.hp1 HG01109.hp2 HG01346.hp2 HG02523.hp2 NA18950.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004	a0001c0001t0002g0103 a0001c0001t0003g0033 a0001c0001t0003g0042 others(3): Show a0001c0001t0002g0103 a0001c0001t0003g0033 a0001c0001t0003g0042 a0001c0001t0003g0097 a0001c0001t0004g0010 a0001c0001t0004g0058	6	128	0.0469	20	c.155 others(43): Show c.1552-193780_1552-193761dupCACACACACACACACACACA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76979541	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG00621.hp1 others(4): Show HG00438.hp1 HG00438.hp2 HG00621.hp1 HG01346.hp2 HG02523.hp2 HG03654.hp2 NA18950.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004	a0001c0001t0002g0103 a0001c0001t0003g0033 a0001c0001t0003g0042 others(4): Show a0001c0001t0002g0103 a0001c0001t0003g0033 a0001c0001t0003g0042 a0001c0001t0003g0043 a0001c0001t0003g0066 a0001c0001t0003g0097 a0001c0001t0004g0058	7	128	0.0547	20	c.155 others(43): Show c.1552-230626_1552-230625insTATATATATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76979696	C C	CGATAGAT others(13): Show CGATAGATAGATAGATAGATA	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01496.hp1 HG01884.hp1 others(15): Show HG01243.hp2 HG01496.hp1 HG01884.hp1 HG02055.hp2 HG02109.hp1 HG02135.hp2 HG02486.hp2 HG02622.hp1 HG02809.hp1 HG02886.hp2 HG03139.hp2 HG03225.hp1 HG03225.hp2 HG03490.hp2 HG03579.hp1 NA18983.hp2 NA19065.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0009	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0038 others(15): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0038 a0001c0001t0001g0096 a0001c0001t0001g0106 a0001c0001t0002g0012 a0001c0001t0002g0059 a0001c0001t0002g0070 a0001c0001t0002g0075 a0001c0001t0002g0086 a0001c0001t0002g0118 a0001c0001t0003g0054 a0001c0001t0003g0088 a0001c0001t0003g0108 a0001c0001t0003g0112 a0001c0001t0003g0117 a0001c0001t0005g0026 a0001c0001t0009g0055	18	128	0.1406	20	c.155 others(43): Show c.1552-230800_1552-230781dupTATCTATCTATCTATCTATC	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77014503	C C	CATATATA others(13): Show CATATATATATATATGTATAT	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	128	0.0078	20	c.155 others(43): Show c.1552-265588_1552-265587insATATACATATATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77014503	C C	CATATATA others(13): Show CATATATATATATATGTGTAT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02622.hp2 HG03139.hp1 others(2): Show HG02055.hp1 HG02622.hp2 HG03139.hp1 HG03579.hp2 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006	a0001c0001t0002g0035 a0001c0001t0002g0121 a0001c0001t0002g0123 others(2): Show a0001c0001t0002g0035 a0001c0001t0002g0121 a0001c0001t0002g0123 a0001c0001t0003g0093 a0001c0001t0006g0034	5	128	0.0391	20	c.155 others(43): Show c.1552-265588_1552-265587insATACACATATATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77049120	T T	TTATATAT others(13): Show TTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19065.hp1 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0011 a0001c0001t0001g0011	1	128	0.0078	20	c.155 others(43): Show c.1552-300205_1552-300204insTATATATATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77049157	T T	TATATATA others(13): Show TATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01243.hp1 NA18522.hp2 NA19043.hp1 HG01243.hp1 NA18522.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0008 a0001c0001t0002g0024 a0001c0001t0002g0051 a0001c0001t0002g0008 a0001c0001t0002g0024 a0001c0001t0002g0051	3	128	0.0234	20	c.155 others(43): Show c.1552-300242_1552-300241insGTGTATATATATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77075914	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18953.hp2 NA19011.hp1 NA18953.hp2 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0102 a0001c0001t0002g0049 a0001c0001t0001g0102 a0001c0001t0002g0049	2	128	0.0156	20	c.155 others(43): Show c.1552-327018_1552-326999dupTTTTTTTTTTTTTTTTTTTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77103647	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02135.hp2 HG02135.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0075 a0001c0001t0002g0075	1	128	0.0078	20	c.155 others(43): Show c.1552-354732_1552-354731insTATATATATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77123213	C C	CAGAGAGA others(13): Show CAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02723.hp2 HG03453.hp2 others(1): Show HG02055.hp1 HG02723.hp2 HG03453.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0064 a0001c0001t0001g0125 a0001c0001t0002g0035 others(1): Show a0001c0001t0001g0064 a0001c0001t0001g0125 a0001c0001t0002g0035 a0001c0001t0003g0109	4	128	0.0313	20	c.155 others(43): Show c.1552-374317_1552-374298dupCTCTCTCTCTCTCTCTCTCT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77145776	A A	AAAATAAA others(13): Show AAAATAAATAAATAAATAAAT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02965.hp2 NA18522.hp1 HG01884.hp2 HG02965.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0062 a0001c0001t0002g0127 a0001c0001t0003g0060 a0001c0001t0001g0062 a0001c0001t0002g0127 a0001c0001t0003g0060	3	128	0.0234	20	c.155 others(43): Show c.1551+372522_1551+372541dupATTTATTTATTTATTTATTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77145800	T T	TAAATAAA others(13): Show TAAATAAATAAATAAATAAAA	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0116 a0001c0001t0001g0116	1	128	0.0078	20	c.155 others(43): Show c.1551+372517_1551+372518insTTTTATTTATTTATTTATTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77207347	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02886.hp2 HG03225.hp1 HG02809.hp2 HG02886.hp2 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0081 a0001c0001t0002g0086 a0001c0001t0003g0054 a0001c0001t0002g0081 a0001c0001t0002g0086 a0001c0001t0003g0054	3	128	0.0234	20	c.155 others(43): Show c.1551+310970_1551+310971insTATATATATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77207372	T T	TATATATA others(13): Show TATATATATATACACACACAC	intron_variant intron_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0037 a0001c0001t0004g0037	1	128	0.0078	20	c.155 others(43): Show c.1551+310945_1551+310946insGTGTGTGTGTATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77207372	T T	TATATATA others(13): Show TATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG03834.hp1 HG04199.hp2 others(2): Show HG02735.hp1 HG03834.hp1 HG04199.hp2 NA18953.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0009 a0001c0001t0002g0019 a0001c0001t0002g0049 others(2): Show a0001c0001t0001g0009 a0001c0001t0002g0019 a0001c0001t0002g0049 a0001c0001t0002g0080 a0001c0001t0002g0087	5	128	0.0391	20	c.155 others(43): Show c.1551+310945_1551+310946insGTGTGTGTATATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77217440	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01192.hp2 HG01243.hp1 others(8): Show HG00621.hp1 HG01192.hp2 HG01243.hp1 HG02055.hp1 HG02630.hp2 HG02886.hp1 HG03139.hp2 HG03579.hp2 HG03654.hp1 NA18966.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0001 a0001c0001t0002 a0001c0001t0004	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0041 others(8): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0041 a0001c0001t0001g0071 a0001c0001t0001g0113 a0001c0001t0002g0008 a0001c0001t0002g0024 a0001c0001t0002g0035 a0001c0001t0002g0103 a0001c0001t0002g0121 a0001c0001t0004g0115	11	128	0.0859	20	c.155 others(43): Show c.1551+300858_1551+300877dupATATATATATATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77217468	T T	TATATATA others(13): Show TATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0062	1	128	0.0078	20	c.155 others(43): Show c.1551+300849_1551+300850insGTATATATATATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77285334	T T	TTATATAT others(13): Show TTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18950.hp1 NA18950.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0042 a0001c0001t0003g0042	1	128	0.0078	20	c.155 others(43): Show c.1551+232983_1551+232984insTATATATATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77285337	A A	AACTTATA others(13): Show AACTTATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19011.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0102 a0001c0001t0001g0102	1	128	0.0078	20	c.155 others(43): Show c.1551+232980_1551+232981insATATATATATATATATAAGT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77285340	T T	TTATATAT others(13): Show TTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00621.hp1 HG00621.hp2 others(21): Show HG00558.hp1 HG00621.hp1 HG00621.hp2 HG00735.hp2 HG01192.hp2 HG01516.hp1 HG01891.hp1 HG02145.hp1 HG02145.hp2 HG02280.hp1 HG02486.hp1 HG02523.hp1 HG02723.hp1 HG02735.hp1 HG02735.hp2 HG02809.hp1 HG02809.hp2 HG02965.hp2 HG03139.hp1 NA18961.hp2 NA18965.hp1 NA18966.hp2 NA19043.hp1 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009	a0001c0001t0001g0002 a0001c0001t0001g0009 a0001c0001t0001g0017 others(21): Show a0001c0001t0001g0002 a0001c0001t0001g0009 a0001c0001t0001g0017 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0057 a0001c0001t0001g0062 a0001c0001t0001g0071 a0001c0001t0002g0007 a0001c0001t0002g0015 a0001c0001t0002g0024 a0001c0001t0002g0072 a0001c0001t0002g0080 a0001c0001t0002g0081 a0001c0001t0002g0103 a0001c0001t0002g0119 a0001c0001t0003g0093 a0001c0001t0004g0025 a0001c0001t0004g0037 a0001c0001t0004g0052 a0001c0001t0004g0095 a0001c0001t0005g0091 a0001c0001t0009g0055	24	128	0.1875	20	c.155 others(43): Show c.1551+232958_1551+232977dupTATATATATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77351614	T T	TTATATAT others(13): Show TTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02280.hp2 NA20129.hp1 HG02258.hp2 HG02280.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0008 a0001c0001t0003 a0001c0001t0008	a0001c0001t0003g0047 a0001c0001t0003g0090 a0001c0001t0008g0126 a0001c0001t0003g0047 a0001c0001t0003g0090 a0001c0001t0008g0126	3	128	0.0234	20	c.155 others(43): Show c.1551+166684_1551+166703dupTATATATATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77360476	T T	TGATACGA others(13): Show TGATACGATACGATACGATAC	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0116 a0001c0001t0001g0116	1	128	0.0078	20	c.155 others(43): Show c.1551+157822_1551+157841dupGTATCGTATCGTATCGTATC	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362100	G G	GGAAAGAA others(13): Show GGAAAGAAAGAGAGAAAGAAA	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0107 a0001c0001t0001g0107	1	128	0.0078	20	c.155 others(43): Show c.1551+156217_1551+156218insTTTCTTTCTCTCTTTCTTTC	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362115	G G	GAGAAAGA others(13): Show GAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0088 a0001c0001t0003g0088	1	128	0.0078	20	c.155 others(43): Show c.1551+156183_1551+156202dupTTCTTTCTTTCTTTCTTTCT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362170	A A	AAAGAAAG others(13): Show AAAGAAAGAAAGAAAGAAAGG	intron_variant intron_variant	MODIFIER	HG01109.hp2 NA19065.hp2 HG01109.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0106 a0001c0001t0004g0010 a0001c0001t0001g0106 a0001c0001t0004g0010	2	128	0.0156	20	c.155 others(43): Show c.1551+156147_1551+156148insCCTTTCTTTCTTTCTTTCTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362170	A A	AAAGAAAG others(13): Show AAAGAAAGAAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG02523.hp1 HG04199.hp1 others(1): Show HG00438.hp2 HG02523.hp1 HG04199.hp1 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0046 a0001c0001t0001g0089 a0001c0001t0002g0110 others(1): Show a0001c0001t0001g0046 a0001c0001t0001g0089 a0001c0001t0002g0110 a0001c0001t0003g0033	4	128	0.0313	20	c.155 others(43): Show c.1551+156147_1551+156148insCCTTCCTTCCTTTCTTTCTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362170	A A	AAAGGAAG others(13): Show AAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0086 a0001c0001t0002g0086	1	128	0.0078	20	c.155 others(43): Show c.1551+156147_1551+156148insCCTTCCTTCCTTCCTTCCTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRSAM1_chr9_127446510_127508499	127466504	A A	ATATATAT others(13): Show ATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00733.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0045 a0002c0002t0001g0045	1	340	0.0029	20	c.529 others(37): Show c.529-1235_529-1234insATATATATATATATATATTT	LRSAM1	ENSG00000148356.15	transcript	ENST00000300417.11	protein_coding	9/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
LRSAM1_chr9_127446510_127508499	127466504	A A	ATATATAT others(13): Show ATATATATATATATATATTTT	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG01517.hp1 HG01515.hp2 HG01517.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0083 a0001c0003t0001g0084 a0001c0003t0001g0083 a0001c0003t0001g0084	2	340	0.0059	20	c.529 others(37): Show c.529-1235_529-1234insATATATATATATATATTTTT	LRSAM1	ENSG00000148356.15	transcript	ENST00000300417.11	protein_coding	9/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
LRTM1_chr3_54913231_54933059	54916614	G G	GCCCACAC others(13): Show GCCCACACTAGCTATGAAGCA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0017 a0001c0001t0005g0017	1	348	0.0029	20	c.18 others(31): Show c.1825_*1844dupTGCTTCATAGCTAGTGTGGG	LRTM1	ENSG00000144771.8	transcript	ENST00000273286.6	protein_coding		1616		chr3	TogoVar
LRWD1_chr7_102459984_102478168	102467169	G G	GGTGTGTG others(13): Show GGTGTGTGTGTATGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01884.hp2 HG00735.hp2 HG01884.hp2	a0001 a0005 a0001 a0005	a0001c0002 a0005c0013 a0001c0002 a0005c0013	a0001c0002t0001 a0005c0013t0002 a0001c0002t0001 a0005c0013t0002	a0001c0002t0001g0141 a0005c0013t0002g0167 a0001c0002t0001g0141 a0005c0013t0002g0167	2	428	0.0047	20	c.433 others(35): Show c.433-169_433-168insTGTGTGTGTATGTGTGTGTG	LRWD1	ENSG00000161036.13	transcript	ENST00000292616.10	protein_coding	3/14		INFO_REALIGN_3_PRIME	chr7	TogoVar
LSAMP_chr3_115797374_116450487	115808108	T T	TCCTTCCT others(13): Show TCCTTCCTTCCTTCCTCCCTC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0061 a0001c0001t0061	a0001c0001t0061g0075 a0001c0001t0061g0075	1	104	0.0096	20	c.22 others(31): Show c.2208_*2209insGAGGGAGGAAGGAAGGAAGG	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	7/7	2208		chr3	TogoVar
LSAMP_chr3_115797374_116450487	115818790	T T	TTATATAT others(13): Show TTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01257.hp1 HG01261.hp2 others(7): Show HG01106.hp1 HG01257.hp1 HG01261.hp2 HG01978.hp1 HG01993.hp1 HG02258.hp2 HG02886.hp1 HG03098.hp1 NA18977.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0005 a0001c0001t0029 others(6): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0029 a0001c0001t0032 a0001c0001t0033 a0001c0001t0040 a0001c0001t0057 a0001c0002t0001 a0001c0002t0054	a0001c0001t0001g0042 a0001c0001t0001g0079 a0001c0001t0005g0048 others(7): Show a0001c0001t0001g0042 a0001c0001t0001g0079 a0001c0001t0005g0048 a0001c0001t0029g0072 a0001c0001t0032g0055 a0001c0001t0033g0006 a0001c0001t0040g0046 a0001c0001t0057g0008 a0001c0002t0001g0083 a0001c0002t0054g0086	10	104	0.0962	20	c.920 others(37): Show c.920-8396_920-8377dupTATATATATATATATATATA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	6/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	115869269	G G	GGAGAGAG others(13): Show GGAGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	NA18977.hp1 NA18977.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0054 a0001c0002t0054	a0001c0002t0054g0086 a0001c0002t0054g0086	1	104	0.0096	20	c.515 others(39): Show c.515-16672_515-16653dupTCTCTCTCTCTCTCTCTCTC	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	3/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	115869269	G G	GGGGAGAG others(13): Show GGGGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG01978.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0083 a0001c0002t0001g0083	1	104	0.0096	20	c.515 others(39): Show c.515-16653_515-16652insTCTCTCTCTCTCTCTCTCCC	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	3/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	115881037	A A	AAAATAAA others(13): Show AAAATAAATAAATAAATAAAT	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG01993.hp2 HG02129.hp1 others(8): Show HG01433.hp2 HG01993.hp2 HG02129.hp1 HG02145.hp2 HG02451.hp2 HG02622.hp1 HG02818.hp2 NA18960.hp2 NA18977.hp1 NA19011.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 others(7): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0022 a0001c0002t0009 a0001c0002t0013 a0001c0002t0052 a0001c0002t0054	a0001c0001t0001g0016 a0001c0001t0001g0042 a0001c0001t0003g0023 others(8): Show a0001c0001t0001g0016 a0001c0001t0001g0042 a0001c0001t0003g0023 a0001c0001t0010g0054 a0001c0001t0011g0068 a0001c0001t0013g0044 a0001c0001t0022g0074 a0001c0002t0009g0090 a0001c0002t0013g0034 a0001c0002t0052g0051 a0001c0002t0054g0086	11	104	0.1058	20	c.515 others(39): Show c.515-28440_515-28421dupATTTATTTATTTATTTATTT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	3/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	115939530	C C	CTCTTTCT others(13): Show CTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	NA19011.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0042	1	104	0.0096	20	c.514 others(39): Show c.514+79965_514+79984dupAAGAAAGAAAGAAAGAAAGA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	3/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116078277	C C	CTTTATTT others(13): Show CTTTATTTATTTATTTATTTA	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0077 a0001c0001t0023g0077	1	104	0.0096	20	c.388 others(37): Show c.388+8027_388+8046dupTAAATAAATAAATAAATAAA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	2/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116102767	T T	TTATCTAT others(13): Show TTATCTATCTATCTATCTATC	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG01884.hp1 HG02717.hp1 HG01433.hp1 HG01884.hp1 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0023 a0001c0001t0046 a0001c0001t0009 a0001c0001t0023 a0001c0001t0046	a0001c0001t0009g0099 a0001c0001t0023g0077 a0001c0001t0046g0098 a0001c0001t0009g0099 a0001c0001t0023g0077 a0001c0001t0046g0098	3	104	0.0289	20	c.156 others(39): Show c.156-16231_156-16212dupGATAGATAGATAGATAGATA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116102785	A A	ATCTATCT others(13): Show ATCTATCTATCTATCTATCTG	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02145.hp1 HG02055.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0065 a0001c0001t0024 a0001c0001t0065	a0001c0001t0024g0015 a0001c0001t0065g0025 a0001c0001t0024g0015 a0001c0001t0065g0025	2	104	0.0192	20	c.156 others(39): Show c.156-16230_156-16229insCAGATAGATAGATAGATAGA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116102785	A A	ATCTATCT others(13): Show ATCTATCTGTCTGTCTGTCTG	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG03098.hp1 HG00735.hp2 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0029 a0001c0001t0019 a0001c0001t0029	a0001c0001t0019g0003 a0001c0001t0029g0072 a0001c0001t0019g0003 a0001c0001t0029g0072	2	104	0.0192	20	c.156 others(39): Show c.156-16230_156-16229insCAGACAGACAGACAGATAGA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116190088	G G	GACACACA others(13): Show GACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0044 a0001c0001t0044	a0001c0001t0044g0009 a0001c0001t0044g0009	1	104	0.0096	20	c.156 others(41): Show c.156-103552_156-103533dupGTGTGTGTGTGTGTGTGTGT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116197130	G G	GACACACA others(13): Show GACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19060.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0056 a0001c0001t0027g0056	1	104	0.0096	20	c.156 others(41): Show c.156-110594_156-110575dupGTGTGTGTGTGTGTGTGTGT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273683	C C	CAGATATA others(13): Show CAGATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0012 a0001c0001t0045g0012	1	104	0.0096	20	c.155 others(41): Show c.155+171193_155+171194insATATATATATATATATATCT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar

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