Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

Chr

Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

Samplehapid

No_hapid

No_samplehapid

Start

End

Minac

Maxac

Minlen

Maxlen

Sort By

Order by

Show

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
OR4D6_chr11_59451961_59462905	59458438	G G	GATTTTAT others(13): Show GATTTTATTTTATTTTATTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0007 a0007	a0007c0008 a0007c0008	a0007c0008t0000 a0007c0008t0000	a0007c0008t0000g0000 a0007c0008t0000g0000	1	422	0.0024	20	c.53 others(29): Show c.533_*534insATTTTATTTTATTTTATTTT	OR4D6	ENSG00000166884.3	transcript	ENST00000300127.3	protein_coding		534		chr11	TogoVar
OR4D6_chr11_59451961_59462905	59458481	T T	TTTATTTT others(13): Show TTTATTTTATTTTATTTTTGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00642.hp2 HG01099.hp1 HG01243.hp2 others(17): Show HG00642.hp2 HG01099.hp1 HG01243.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG02486.hp2 HG02886.hp1 HG02895.hp1 HG02897.hp1 HG02965.hp2 HG03209.hp2 HG03540.hp2 NA18943.hp2 NA18963.hp2 NA18970.hp2 NA18971.hp2 NA18991.hp2 NA19043.hp2 NA19062.hp2	a0005 a0010 a0005 a0010	a0005c0005 a0010c0011 a0005c0005 a0010c0011	a0005c0005t0000 a0010c0011t0000 a0005c0005t0000 a0010c0011t0000	a0005c0005t0000g0000 a0010c0011t0000g0000 a0005c0005t0000g0000 a0010c0011t0000g0000	20	422	0.0474	20	c.57 others(29): Show c.576_*577insTTATTTTATTTTATTTTTGG	OR4D6	ENSG00000166884.3	transcript	ENST00000300127.3	protein_coding		577		chr11	TogoVar
OR4F17_chr19_102104_118156	113727	T T	TATACATA others(13): Show TATACATACATACATACATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0004 a0003c0005t0004	a0003c0005t0004g0081 a0003c0005t0004g0081	1	227	0.0044	20	c.21 others(31): Show c.2131_*2132insATACATACATACATACATAC	OR4F17	ENSG00000176695.8	transcript	ENST00000585993.3	protein_coding		572		chr19	TogoVar
OR4F6_chr15_101798509_101811887	101802783	A A	ACTTCCTT others(13): Show ACTTCCTTCCTTCCTTCCTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01074.hp1 HG01081.hp2 HG01109.hp1 others(21): Show HG01074.hp1 HG01081.hp2 HG01109.hp1 HG01123.hp2 HG01169.hp1 HG01346.hp1 HG02135.hp2 HG02257.hp2 HG02258.hp2 HG02273.hp1 HG02300.hp1 HG02451.hp2 HG02486.hp2 HG02559.hp1 HG02572.hp1 HG02922.hp1 HG03041.hp1 HG03130.hp1 HG03516.hp1 NA19009.hp2 NA19091.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0004t0001	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0019 others(3): Show a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0019 a0001c0001t0002g0003 a0001c0002t0001g0017 a0001c0004t0001g0001	24	372	0.0645	20	c.-79 others(29): Show c.-796_-795insCTTCCTTCCTTCCTTCCTTC	OR4F6	ENSG00000184140.6	transcript	ENST00000328882.6	protein_coding		725		chr15	TogoVar
OR4F6_chr15_101798509_101811887	101802820	C C	CTTCCTTC others(13): Show CTTCCTTCCTTCCTTCCTTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0006 a0006	a0006c0011 a0006c0011	a0006c0011t0001 a0006c0011t0001	a0006c0011t0001g0008 a0006c0011t0001g0008	1	372	0.0027	20	c.-75 others(29): Show c.-759_-758insTTCCTTCCTTCCTTCCTTCT	OR4F6	ENSG00000184140.6	transcript	ENST00000328882.6	protein_coding		688		chr15	TogoVar
OR4F6_chr15_101798509_101811887	101809529	A A	AATTTGCT others(13): Show AATTTGCTTAATTGGTTTATT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20805.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	372	0.0027	20	c.28 others(31): Show c.2871_*2872insATTTGCTTAATTGGTTTATT	OR4F6	ENSG00000184140.6	transcript	ENST00000328882.6	protein_coding		2643		chr15	TogoVar
OR4K2_chr14_19870142_19888932	19872713	T T	TTATATAT others(13): Show TTATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0061 a0001c0001t0061	a0001c0001t0061g0003 a0001c0001t0061g0003	1	254	0.0039	20	c.-34 others(31): Show c.-3445_-3444insTATATATATATATATATATA	OR4K2	ENSG00000165762.3	transcript	ENST00000641885.1	protein_coding		2428		chr14	TogoVar
OR4M1_chr14_19768504_19788696	19787216	T T	TTTCCTTC others(13): Show TTTCCTTCCTTCCTTCCTTCC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01928.hp2 HG02165.hp2 NA18612.hp1 others(3): Show HG01928.hp2 HG02165.hp2 NA18612.hp1 NA18950.hp2 NA18989.hp2 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0006 a0001c0001t0001g0066 a0001c0001t0001g0067 others(2): Show a0001c0001t0001g0006 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0070 a0001c0001t0002g0006	6	276	0.0217	20	c.59 others(31): Show c.5952_*5953insTTCCTTCCTTCCTTCCTTCC	OR4M1	ENSG00000176299.5	transcript	ENST00000641200.1	protein_coding		3521		chr14	TogoVar
OR4M2B_chr15_21632909_21643992	21634742	C C	CATATATA others(13): Show CATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp1 HG01258.hp2 HG06807.hp1 HG00738.hp1 HG01258.hp2 HG06807.hp1	a0004 a0006 a0004 a0006	a0004c0004 a0006c0011 a0004c0004 a0006c0011	a0004c0004t0001 a0006c0011t0001 a0004c0004t0001 a0006c0011t0001	a0004c0004t0001g0000 a0006c0011t0001g0000 a0004c0004t0001g0000 a0006c0011t0001g0000	3	215	0.0140	20	c.-32 others(31): Show c.-3265_-3264insATATATATATATATATATAT	OR4M2B	ENSG00000182974.3	transcript	ENST00000332663.3	protein_coding		3166		chr15	TogoVar
OR4M2B_chr15_21632909_21643992	21642207	G G	GTATATAT others(13): Show GTATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02155.hp2 HG02155.hp2	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0001 a0005c0006t0001	a0005c0006t0001g0000 a0005c0006t0001g0000	1	215	0.0047	20	c.32 others(31): Show c.3259_*3260insTATATATATATATATATATA	OR4M2B	ENSG00000182974.3	transcript	ENST00000332663.3	protein_coding		3216		chr15	TogoVar
OR51A4_chr11_4937831_4952605	4942089	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00597.hp1 others(85): Show HG00099.hp1 HG00099.hp2 HG00597.hp1 HG00733.hp2 HG01069.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01099.hp2 HG01106.hp1 HG01168.hp2 HG01257.hp1 HG01884.hp1 HG01891.hp2 HG01975.hp1 HG02004.hp1 HG02015.hp1 HG02040.hp2 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02273.hp1 HG02280.hp2 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02572.hp2 HG02602.hp1 HG02615.hp2 HG02683.hp2 HG02723.hp1 HG02809.hp1 HG02809.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp2 HG02922.hp2 HG03139.hp1 HG03471.hp1 HG03579.hp2 HG03654.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp2 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18939.hp1 NA18942.hp2 NA18945.hp1 NA18950.hp2 NA18957.hp1 NA18959.hp2 NA18960.hp1 NA18960.hp2 NA18961.hp2 NA18965.hp1 NA18965.hp2 NA18966.hp1 NA18970.hp1 NA18970.hp2 NA18977.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA19001.hp1 NA19003.hp1 NA19011.hp2 NA19058.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19063.hp1 NA19066.hp2 NA19070.hp2 NA19072.hp1 NA19074.hp2 NA19080.hp2 NA19082.hp2 NA19083.hp1 NA19089.hp1 NA19089.hp2 NA20752.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0008 a0010	a0001c0001 a0002c0002 a0003c0003 others(2): Show a0001c0001 a0002c0002 a0003c0003 a0008c0010 a0010c0008	a0001c0001t0004 a0001c0001t0006 a0001c0001t0010 others(8): Show a0001c0001t0004 a0001c0001t0006 a0001c0001t0010 a0002c0002t0001 a0002c0002t0008 a0002c0002t0022 a0002c0002t0047 a0003c0003t0002 a0008c0010t0016 a0008c0010t0033 a0010c0008t0013	a0001c0001t0004g0005 a0001c0001t0004g0007 a0001c0001t0004g0057 others(12): Show a0001c0001t0004g0005 a0001c0001t0004g0007 a0001c0001t0004g0057 a0001c0001t0004g0062 a0001c0001t0006g0006 a0001c0001t0010g0013 a0002c0002t0001g0001 a0002c0002t0008g0009 a0002c0002t0022g0017 a0002c0002t0047g0037 a0003c0003t0002g0002 a0008c0010t0016g0031 a0008c0010t0016g0058 a0008c0010t0033g0060 a0010c0008t0013g0014	88	446	0.1973	20	c.40 others(31): Show c.4050_*4069dupTTTTTTTTTTTTTTTTTTTT	OR51A4	ENSG00000205497.5	transcript	ENST00000641898.1	protein_coding		741		chr11	TogoVar
OR51A7_chr11_4898783_4914462	4907095	T T	TAAAAAAA others(13): Show TAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG01884.hp2 HG01891.hp2 others(9): Show HG00621.hp2 HG01884.hp2 HG01891.hp2 HG02970.hp2 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03579.hp2 NA18980.hp2 NA20752.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0002c0002t0011 a0001c0001t0001 a0002c0002t0002 a0002c0002t0011	a0001c0001t0001g0026 a0001c0001t0001g0032 a0001c0001t0001g0049 others(2): Show a0001c0001t0001g0026 a0001c0001t0001g0032 a0001c0001t0001g0049 a0002c0002t0002g0015 a0002c0002t0011g0015	12	452	0.0266	20	c.-31 others(35): Show c.-31-243_-31-224dupAAAAAAAAAAAAAAAAAAAA	OR51A7	ENSG00000176895.9	transcript	ENST00000641490.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr11	TogoVar
OR51B4_chr11_5296014_5306946	5298439	A A	AAAATAAA others(13): Show AAAATAAATAAATAAATAAAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02922.hp1 HG02970.hp2 HG03579.hp2 HG02922.hp1 HG02970.hp2 HG03579.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0000 a0003c0003t0000	a0003c0003t0000g0000 a0003c0003t0000g0000	3	470	0.0064	20	c.25 others(31): Show c.2555_*2574dupATTTATTTATTTATTTATTT	OR51B4	ENSG00000183251.4	transcript	ENST00000380224.2	protein_coding		2574		chr11	TogoVar
OR51E1_chr11_4638982_4660488	4656414	T T	TACACACA others(13): Show TACACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02027.hp2 HG02523.hp2 NA18995.hp2 others(2): Show HG02027.hp2 HG02523.hp2 NA18995.hp2 NA19012.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0002 a0001c0001t0002g0001 a0001c0001t0001g0002 a0001c0001t0002g0001	5	452	0.0111	20	c.29 others(31): Show c.2931_*2932insACACACACACACACACACAC	OR51E1	ENSG00000180785.10	transcript	ENST00000396952.6	protein_coding		927		chr11	TogoVar
OR51F1_chr11_4763979_4774938	4766693	T T	TTCCCTCC others(13): Show TTCCCTCCCTCCCTCCCTCCC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00639.hp2 HG00642.hp1 HG00673.hp1 others(16): Show HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00741.hp1 HG01070.hp1 HG01071.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG02055.hp2 HG02559.hp1 HG02559.hp2 HG02698.hp2 HG02723.hp2 HG02896.hp2 HG03041.hp2 HG03492.hp2 HG03704.hp1 NA18998.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0008 a0001c0015 others(1): Show a0001c0001 a0001c0008 a0001c0015 a0003c0002	a0001c0001t0000 a0001c0008t0000 a0001c0015t0000 others(1): Show a0001c0001t0000 a0001c0008t0000 a0001c0015t0000 a0003c0002t0000	a0001c0001t0000g0000 a0001c0008t0000g0000 a0001c0015t0000g0000 others(1): Show a0001c0001t0000g0000 a0001c0008t0000g0000 a0001c0015t0000g0000 a0003c0002t0000g0000	19	342	0.0556	20	c.22 others(31): Show c.2266_*2285dupGGGAGGGAGGGAGGGAGGGA	OR51F1	ENSG00000280021.3	transcript	ENST00000624103.2	protein_coding		2285		chr11	TogoVar
OR51F1_chr11_4763979_4774938	4766715	C C	CCCTCCCT others(13): Show CCCTCCCTCCCTCCCTCCCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02572.hp2 HG02965.hp2 HG02572.hp2 HG02965.hp2	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0000 a0002c0007t0000	a0002c0007t0000g0000 a0002c0007t0000g0000	2	342	0.0059	20	c.22 others(31): Show c.2263_*2264insAAGGGAGGGAGGGAGGGAGG	OR51F1	ENSG00000280021.3	transcript	ENST00000624103.2	protein_coding		2263		chr11	TogoVar
OR51I2_chr11_5444323_5461518	5455587	G G	GAGAGAAA others(13): Show GAGAGAAAGAGAAAAAGAAAA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0013 a0002c0002t0013	a0002c0002t0013g0002 a0002c0002t0013g0034 a0002c0002t0013g0002 a0002c0002t0013g0034	3	482	0.0062	20	c.11 others(31): Show c.1177_*1178insAAAAGAGAAAGAGAAAAAGA	OR51I2	ENSG00000187918.6	transcript	ENST00000641930.1	protein_coding	2/2	1178	INFO_REALIGN_3_PRIME	chr11	TogoVar
OR51L1_chr11_4989851_5010536	4996721	T T	TTTTCTTT others(13): Show TTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00609.hp1 HG01175.hp2 others(10): Show HG00423.hp2 HG00609.hp1 HG01175.hp2 HG01433.hp2 HG01981.hp2 HG02004.hp1 HG02129.hp2 HG02148.hp2 HG03453.hp1 NA18950.hp2 NA18955.hp2 NA18990.hp1 NA19009.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0004c0005 a0001c0001 a0001c0002 a0004c0005	a0001c0001t0002 a0001c0001t0003 a0001c0001t0032 others(3): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0032 a0001c0001t0042 a0001c0002t0001 a0004c0005t0003	a0001c0001t0002g0029 a0001c0001t0003g0036 a0001c0001t0003g0128 others(4): Show a0001c0001t0002g0029 a0001c0001t0003g0036 a0001c0001t0003g0128 a0001c0001t0032g0078 a0001c0001t0042g0106 a0001c0002t0001g0105 a0004c0005t0003g0036	13	470	0.0277	20	c.-26 others(37): Show c.-261-732_-261-713dupTTTCTTTCTTTCTTTCTTTC	OR51L1	ENSG00000176798.3	transcript	ENST00000641819.1	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr11	TogoVar
OR52A1_chr11_5141824_5159757	5157378	T T	TTGTGTGT others(13): Show TTGTGTGTGTGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp1 HG01884.hp1 HG03130.hp1 others(4): Show HG00738.hp1 HG01884.hp1 HG03130.hp1 HG03239.hp2 NA18522.hp1 NA19030.hp1 NA20752.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0006 a0002c0002t0002 a0002c0002t0003 a0001c0001t0006 a0002c0002t0002 a0002c0002t0003	a0001c0001t0006g0005 a0002c0002t0002g0014 a0002c0002t0003g0003 a0001c0001t0006g0005 a0002c0002t0002g0014 a0002c0002t0003g0003	7	438	0.0160	20	c.-32 others(31): Show c.-3254_-3253insCACACACACACACACACACA	OR52A1	ENSG00000182070.7	transcript	ENST00000380367.3	protein_coding		2622		chr11	TogoVar
OR52E6_chr11_5835928_5846897	5842857	C C	CACATTTT others(13): Show CACATTTTCTTTATCCACTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	450	0.0022	20	c.-98 others(29): Show c.-980_-961dupAGAGTGGATAAAGAAAATGT	OR52E6	ENSG00000205409.3	transcript	ENST00000329322.5	protein_coding		961		chr11	TogoVar
OR52N1_chr11_5781471_5796265	5794390	T T	TTCTCTCT others(13): Show TTCTCTCTCTCTCTCTCTCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp1 HG00741.hp1 NA18946.hp1 others(1): Show HG00597.hp1 HG00741.hp1 NA18946.hp1 NA18966.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0002 a0002c0002t0002g0002	4	418	0.0096	20	c.-33 others(31): Show c.-3344_-3325dupGAGAGAGAGAGAGAGAGAGA	OR52N1	ENSG00000181001.3	transcript	ENST00000641645.1	protein_coding		3126		chr11	TogoVar
OR52N1_chr11_5781471_5796265	5794426	C C	CTCTCTCT others(13): Show CTCTCTCTCTCTCTCTCTCTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01346.hp1 NA19060.hp1 HG01346.hp1 NA19060.hp1	a0002 a0002	a0002c0002 a0002c0010 a0002c0002 a0002c0010	a0002c0002t0002 a0002c0010t0004 a0002c0002t0002 a0002c0010t0004	a0002c0002t0002g0020 a0002c0010t0004g0037 a0002c0002t0002g0020 a0002c0010t0004g0037	2	418	0.0048	20	c.-33 others(31): Show c.-3361_-3360insTAGAGAGAGAGAGAGAGAGA	OR52N1	ENSG00000181001.3	transcript	ENST00000641645.1	protein_coding		3162		chr11	TogoVar
OR52N2_chr11_5803924_5826483	5816545	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG01081.hp1 HG01261.hp1 others(4): Show HG00733.hp1 HG01081.hp1 HG01261.hp1 HG02280.hp2 HG03098.hp2 HG03453.hp2 HG03654.hp2	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0006 a0004c0005t0006	a0004c0005t0006g0018 a0004c0005t0006g0027 a0004c0005t0006g0028 a0004c0005t0006g0018 a0004c0005t0006g0027 a0004c0005t0006g0028	7	402	0.0174	20	c.-54 others(37): Show c.-54-3735_-54-3734insTTTTTTTTTTTTTTTTTTTT	OR52N2	ENSG00000180988.3	transcript	ENST00000317037.3	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr11	TogoVar
OR56A1_chr11_6014336_6035758	6014989	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02074.hp1 HG02074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0059 a0001c0001t0059	a0001c0001t0059g0081 a0001c0001t0059g0081	1	402	0.0025	20	c.11 others(33): Show c.11758_*11759insTTTTTTTTTTTTTTTTTTTT	OR56A1	ENSG00000180934.7	transcript	ENST00000641900.1	protein_coding		4346		chr11	TogoVar
OR56A4_chr11_5994445_6011946	6011202	T T	TTATATAC others(13): Show TTATATACATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp2 HG03486.hp1 NA18982.hp1 HG00597.hp2 HG03486.hp1 NA18982.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0016 a0001c0001t0001 a0001c0001t0016	a0001c0001t0001g0003 a0001c0001t0016g0041 a0001c0001t0001g0003 a0001c0001t0016g0041	3	470	0.0064	20	c.-44 others(31): Show c.-4477_-4476insTATATATATATATGTATATA	OR56A4	ENSG00000183389.5	transcript	ENST00000641156.1	protein_coding		4257		chr11	TogoVar
OR5A1_chr11_59431469_59456380	59454004	A A	AACACACA others(13): Show AACACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01109.hp2 HG02145.hp2 HG02897.hp2 others(2): Show HG01109.hp2 HG02145.hp2 HG02897.hp2 NA18943.hp1 NA19062.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0007 a0002c0002t0019 a0002c0002t0033 a0002c0002t0007 a0002c0002t0019 a0002c0002t0033	a0002c0002t0007g0010 a0002c0002t0019g0035 a0002c0002t0033g0010 others(1): Show a0002c0002t0007g0010 a0002c0002t0019g0035 a0002c0002t0033g0010 a0002c0002t0033g0026	5	408	0.0123	20	c.98 others(31): Show c.9888_*9889insACACACACACACACACACAC	OR5A1	ENSG00000172320.4	transcript	ENST00000641045.1	protein_coding		2625		chr11	TogoVar
OR5A1_chr11_59431469_59456380	59454018	C C	CACACACA others(13): Show CACACACACACACACACACAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00408.hp1 others(49): Show HG00140.hp1 HG00280.hp1 HG00408.hp1 HG00438.hp1 HG00544.hp2 HG00558.hp1 HG00741.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01175.hp2 HG01256.hp2 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01358.hp2 HG01433.hp2 HG02055.hp1 HG02074.hp1 HG02083.hp2 HG02109.hp2 HG02135.hp2 HG02257.hp1 HG02293.hp2 HG02615.hp2 HG02698.hp2 HG03654.hp1 HG03710.hp1 HG03834.hp1 HG04199.hp2 NA18939.hp1 NA18942.hp1 NA18943.hp2 NA18945.hp2 NA18950.hp2 NA18957.hp2 NA18973.hp2 NA18984.hp2 NA18993.hp2 NA19001.hp2 NA19058.hp2 NA19060.hp1 NA19060.hp2 NA19064.hp1 NA19075.hp2 NA19076.hp2 NA19080.hp1 NA19083.hp2 NA19084.hp1 NA19085.hp2 NA20129.hp1 NA20905.hp2	a0002 a0005 a0002 a0005	a0002c0003 a0005c0011 a0002c0003 a0005c0011	a0002c0003t0002 a0002c0003t0006 a0002c0003t0037 others(2): Show a0002c0003t0002 a0002c0003t0006 a0002c0003t0037 a0002c0003t0068 a0005c0011t0074	a0002c0003t0002g0004 a0002c0003t0002g0009 a0002c0003t0002g0011 others(10): Show a0002c0003t0002g0004 a0002c0003t0002g0009 a0002c0003t0002g0011 a0002c0003t0002g0030 a0002c0003t0002g0032 a0002c0003t0002g0060 a0002c0003t0002g0061 a0002c0003t0006g0004 a0002c0003t0006g0016 a0002c0003t0006g0031 a0002c0003t0037g0009 a0002c0003t0068g0004 a0005c0011t0074g0016	52	408	0.1275	20	c.99 others(31): Show c.9902_*9903insACACACACACACACACACAT	OR5A1	ENSG00000172320.4	transcript	ENST00000641045.1	protein_coding		2639		chr11	TogoVar
OR5AP2_chr11_56636489_56647439	56639664	T T	TTTTATTT others(13): Show TTTTATTTATTTATTTATTTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	438	0.0023	20	c.18 others(31): Show c.1824_*1825insTAAATAAATAAATAAATAAA	OR5AP2	ENSG00000172464.4	transcript	ENST00000544374.3	protein_coding		1824		chr11	TogoVar
OR5AP2_chr11_56636489_56647439	56643277	A A	AGAAGGAA others(13): Show AGAAGGAAGGAAGGAAGGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00733.hp2 HG02055.hp1 HG03942.hp1 others(2): Show HG00733.hp2 HG02055.hp1 HG03942.hp1 NA18955.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	5	438	0.0114	20	c.-83 others(29): Show c.-839_-838insCTTCCTTCCTTCCTTCCTTC	OR5AP2	ENSG00000172464.4	transcript	ENST00000544374.3	protein_coding		839		chr11	TogoVar
OR5AS1_chr11_56022654_56043191	56039648	T T	TATATATA others(13): Show TATATATATATATATATACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02895.hp1 HG03209.hp2 HG02895.hp1 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0002 a0001c0001t0006g0002	2	432	0.0046	20	c.82 others(31): Show c.8255_*8256insATATATATATATATATACAC	OR5AS1	ENSG00000181785.3	transcript	ENST00000641320.1	protein_coding		1458		chr11	TogoVar
OR5AS1_chr11_56022654_56043191	56039648	T T	TATATATA others(13): Show TATATATATATATATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp2 HG00741.hp2 HG01099.hp2 others(31): Show HG00280.hp2 HG00741.hp2 HG01099.hp2 HG01167.hp1 HG01169.hp2 HG01361.hp1 HG02055.hp1 HG02074.hp2 HG02132.hp2 HG02165.hp2 HG02257.hp1 HG02293.hp2 HG02630.hp2 HG03654.hp2 HG04228.hp2 NA18747.hp1 NA18944.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18955.hp2 NA18979.hp1 NA18987.hp2 NA18991.hp1 NA18998.hp1 NA19006.hp1 NA19010.hp2 NA19068.hp2 NA19070.hp2 NA19077.hp1 NA19078.hp1 NA19081.hp2 NA19090.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0042 a0001c0001t0063	a0001c0001t0001g0001 a0001c0001t0003g0002 a0001c0001t0003g0016 others(3): Show a0001c0001t0001g0001 a0001c0001t0003g0002 a0001c0001t0003g0016 a0001c0001t0006g0002 a0001c0001t0042g0002 a0001c0001t0063g0001	34	432	0.0787	20	c.82 others(31): Show c.8255_*8256insATATATATATATATATATAC	OR5AS1	ENSG00000181785.3	transcript	ENST00000641320.1	protein_coding		1458		chr11	TogoVar
OR5B3_chr11_58397464_58411874	58410280	T T	TTTCCTTC others(13): Show TTTCCTTCCTTCCTTCCTTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG01169.hp2 HG02074.hp2 others(10): Show HG00099.hp2 HG01169.hp2 HG02074.hp2 HG02257.hp2 HG02523.hp2 HG02647.hp2 HG02809.hp2 HG03453.hp2 HG03486.hp2 HG03579.hp1 NA18983.hp2 NA18986.hp2 NA19043.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0004c0004t0001 a0001c0001t0001 a0004c0004t0001	a0001c0001t0001g0001 a0001c0001t0001g0010 a0004c0004t0001g0013 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0010 a0004c0004t0001g0013 a0004c0004t0001g0016	13	386	0.0337	20	c.-35 others(31): Show c.-3507_-3506insGGAAGGAAGGAAGGAAGGAA	OR5B3	ENSG00000172769.4	transcript	ENST00000641865.1	protein_coding		3407		chr11	TogoVar
OR5D14_chr11_55790556_55801500	55798033	T T	TACACACA others(13): Show TACACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02523.hp2 HG02523.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0000 a0002c0002t0000	a0002c0002t0000g0000 a0002c0002t0000g0000	1	446	0.0022	20	c.15 others(31): Show c.1533_*1534insACACACACACACACACACAC	OR5D14	ENSG00000186113.1	transcript	ENST00000335605.1	protein_coding		1534		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55815767	C C	CTATATAT others(13): Show CTATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18941.hp2 NA18941.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	434	0.0023	20	c.-38 others(31): Show c.-3863_-3862insTATATATATATATATATATA	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		3862		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55823219	G G	GTATATAT others(13): Show GTATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19004.hp2 NA19004.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	434	0.0023	20	c.26 others(31): Show c.2648_*2649insTATATATATATATATATATA	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		2649		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55823246	T T	TATAGAGA others(13): Show TATAGAGAGAGAGAGAGAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02155.hp1 HG02155.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	434	0.0023	20	c.26 others(31): Show c.2675_*2676insATAGAGAGAGAGAGAGAGAG	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		2676		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55823246	T T	TATATAGA others(13): Show TATATAGAGAGAGAGAGAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01255.hp1 HG01516.hp1 HG03834.hp2 HG01255.hp1 HG01516.hp1 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	3	434	0.0069	20	c.26 others(31): Show c.2675_*2676insATATAGAGAGAGAGAGAGAG	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		2676		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55823246	T T	TATATATA others(13): Show TATATATATAGAGAGAGAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	434	0.0023	20	c.26 others(31): Show c.2675_*2676insATATATATAGAGAGAGAGAG	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		2676		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55823246	T T	TATATATA others(13): Show TATATATATATAGAGAGAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	434	0.0023	20	c.26 others(31): Show c.2675_*2676insATATATATATAGAGAGAGAG	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		2676		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55823246	T T	TATATATA others(13): Show TATATATATATATAGAGAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01361.hp1 HG01952.hp1 HG01361.hp1 HG01952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	2	434	0.0046	20	c.26 others(31): Show c.2675_*2676insATATATATATATAGAGAGAG	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		2676		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55823246	T T	TATATATA others(13): Show TATATATATATATATATAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03831.hp2 NA18970.hp1 NA18982.hp1 HG03831.hp2 NA18970.hp1 NA18982.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	3	434	0.0069	20	c.26 others(31): Show c.2675_*2676insATATATATATATATATAGAG	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		2676		chr11	TogoVar
OR5L1_chr11_55806367_55817476	55815767	C C	CTATATAT others(13): Show CTATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18941.hp1 NA18941.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	440	0.0023	20	c.33 others(31): Show c.3365_*3366insTATATATATATATATATATA	OR5L1	ENSG00000279395.3	transcript	ENST00000625203.2	protein_coding		3292		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATAGAGA others(13): Show TATAGAGAGAGAGAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02155.hp2 HG02155.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	448	0.0022	20	c.-39 others(31): Show c.-3973_-3972insATAGAGAGAGAGAGAGAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATATAGA others(13): Show TATATAGAGAGAGAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01516.hp2 HG03834.hp1 HG01516.hp2 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	2	448	0.0045	20	c.-39 others(31): Show c.-3973_-3972insATATAGAGAGAGAGAGAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATATATA others(13): Show TATATATAGAGAGAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18983.hp2 NA18983.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	448	0.0022	20	c.-39 others(31): Show c.-3973_-3972insATATATAGAGAGAGAGAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATATATA others(13): Show TATATATATAGAGAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	448	0.0022	20	c.-39 others(31): Show c.-3973_-3972insATATATATAGAGAGAGAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATATATA others(13): Show TATATATATATAGAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	448	0.0022	20	c.-39 others(31): Show c.-3973_-3972insATATATATATAGAGAGAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATATATA others(13): Show TATATATATATATAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp1 HG01952.hp1 HG02148.hp1 HG01361.hp1 HG01952.hp1 HG02148.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	3	448	0.0067	20	c.-39 others(31): Show c.-3973_-3972insATATATATATATAGAGAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATATATA others(13): Show TATATATATATATATAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19001.hp2 NA19001.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	448	0.0022	20	c.-39 others(31): Show c.-3973_-3972insATATATATATATATAGAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATATATA others(13): Show TATATATATATATATATAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18970.hp2 NA18970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	448	0.0022	20	c.-39 others(31): Show c.-3973_-3972insATATATATATATATATAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar

Search by Variant

Search

Search Results