Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PCDHA7_chr5_140829269_141017347	140946611	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0026 a0002c0001t0001g0026	1	248	0.0040	20	c.235 others(41): Show c.2356-32336_2356-32317dupTATATATATATATATATATA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946631	T T	TATATATA others(13): Show TATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0087 a0002c0001t0001g0087	1	248	0.0040	20	c.235 others(41): Show c.2356-32317_2356-32316insTATATATATATATATACACA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946631	T T	TATATATA others(13): Show TATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0200 a0001c0002t0005g0200	1	248	0.0040	20	c.235 others(41): Show c.2356-32317_2356-32316insTATATATATATATATATACA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140941202	C C	CCTTTCTT others(13): Show CCTTTCTTCCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02155.hp1 NA18522.hp1 HG02155.hp1 NA18522.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0121 a0002c0002t0001g0076 a0001c0001t0001g0121 a0002c0002t0001g0076	2	258	0.0078	20	c.239 others(41): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTT	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140941202	C C	CCTTTCTT others(13): Show CCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02148.hp1 NA18941.hp1 others(3): Show HG02145.hp2 HG02148.hp1 NA18941.hp1 NA19060.hp2 NA19065.hp1 NA19077.hp1	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0002c0002 a0008c0011 a0001c0001 a0002c0002 a0008c0011	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0002c0002t0004 a0008c0011t0008	a0001c0001t0001g0106 a0001c0001t0002g0052 a0002c0002t0001g0071 others(3): Show a0001c0001t0001g0106 a0001c0001t0002g0052 a0002c0002t0001g0071 a0002c0002t0001g0110 a0002c0002t0004g0072 a0008c0011t0008g0244	6	258	0.0233	20	c.239 others(41): Show c.2395-37736_2395-37735insTCTTTCTTTCTTTCTTTCTT	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140941214	C C	CCTTTCTT others(13): Show CCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp2 HG00621.hp2 others(5): Show HG00280.hp2 HG00323.hp2 HG00621.hp2 HG01517.hp1 HG02109.hp2 HG02293.hp1 NA18977.hp2 NA18991.hp2	a0001 a0002 a0022 a0001 a0002 a0022	a0001c0001 a0002c0002 a0022c0026 a0001c0001 a0002c0002 a0022c0026	a0001c0001t0001 a0002c0002t0001 a0022c0026t0001 a0001c0001t0001 a0002c0002t0001 a0022c0026t0001	a0001c0001t0001g0067 a0001c0001t0001g0090 a0001c0001t0001g0096 others(5): Show a0001c0001t0001g0067 a0001c0001t0001g0090 a0001c0001t0001g0096 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0113 a0002c0002t0001g0036 a0022c0026t0001g0083	8	258	0.0310	20	c.239 others(41): Show c.2395-37712_2395-37693dupTTCTTTCTTTCTTTCTTTCT	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946611	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0075 a0004c0004t0001g0075	1	258	0.0039	20	c.239 others(41): Show c.2395-32336_2395-32317dupTATATATATATATATATATA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946631	T T	TATATATA others(13): Show TATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0058 a0002c0002t0001g0058	1	258	0.0039	20	c.239 others(41): Show c.2395-32317_2395-32316insTATATATATATATATACACA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946631	T T	TATATATA others(13): Show TATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0122 a0001c0001t0007g0122	1	258	0.0039	20	c.239 others(41): Show c.2395-32317_2395-32316insTATATATATATATATATACA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140941202	C C	CCTTTCTT others(13): Show CCTTTCTTCCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02155.hp1 NA18522.hp2 HG02155.hp1 NA18522.hp2	a0002 a0003 a0002 a0003	a0002c0002 a0003c0004 a0002c0002 a0003c0004	a0002c0002t0001 a0003c0004t0001 a0002c0002t0001 a0003c0004t0001	a0002c0002t0001g0114 a0003c0004t0001g0050 a0002c0002t0001g0114 a0003c0004t0001g0050	2	256	0.0078	20	c.239 others(41): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTT	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140941202	C C	CCTTTCTT others(13): Show CCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02148.hp1 NA18941.hp1 others(2): Show HG02145.hp2 HG02148.hp1 NA18941.hp1 NA19060.hp2 NA19077.hp1	a0002 a0006 a0002 a0006	a0002c0002 a0006c0036 a0002c0002 a0006c0036	a0002c0002t0001 a0002c0002t0002 a0006c0036t0015 a0002c0002t0001 a0002c0002t0002 a0006c0036t0015	a0002c0002t0001g0087 a0002c0002t0001g0102 a0002c0002t0001g0107 others(2): Show a0002c0002t0001g0087 a0002c0002t0001g0102 a0002c0002t0001g0107 a0002c0002t0002g0073 a0006c0036t0015g0230	5	256	0.0195	20	c.239 others(41): Show c.2395-37736_2395-37735insTCTTTCTTTCTTTCTTTCTT	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140941214	C C	CCTTTCTT others(13): Show CCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp2 HG00621.hp1 others(5): Show HG00280.hp2 HG00323.hp2 HG00621.hp1 HG01517.hp1 HG02109.hp2 HG02293.hp1 NA18977.hp2 NA18991.hp2	a0002 a0004 a0010 others(2): Show a0002 a0004 a0010 a0018 a0021	a0002c0002 a0004c0003 a0010c0011 others(2): Show a0002c0002 a0004c0003 a0010c0011 a0018c0026 a0021c0027	a0002c0002t0001 a0004c0003t0001 a0010c0011t0001 others(2): Show a0002c0002t0001 a0004c0003t0001 a0010c0011t0001 a0018c0026t0001 a0021c0027t0001	a0002c0002t0001g0099 a0004c0003t0001g0013 a0004c0003t0001g0021 others(5): Show a0002c0002t0001g0099 a0004c0003t0001g0013 a0004c0003t0001g0021 a0004c0003t0001g0022 a0010c0011t0001g0006 a0010c0011t0001g0008 a0018c0026t0001g0004 a0021c0027t0001g0018	8	256	0.0313	20	c.239 others(41): Show c.2395-37712_2395-37693dupTTCTTTCTTTCTTTCTTTCT	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140946611	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0113 a0002c0002t0001g0113	1	256	0.0039	20	c.239 others(41): Show c.2395-32336_2395-32317dupTATATATATATATATATATA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140946631	T T	TATATATA others(13): Show TATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0081 a0002c0002t0001g0081	1	256	0.0039	20	c.239 others(41): Show c.2395-32317_2395-32316insTATATATATATATATACACA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140946631	T T	TATATATA others(13): Show TATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0009 a0003c0004t0009	a0003c0004t0009g0052 a0003c0004t0009g0052	1	256	0.0039	20	c.239 others(41): Show c.2395-32317_2395-32316insTATATATATATATATATACA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140941202	C C	CCCTTCTT others(13): Show CCCTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	NA18983.hp1 NA18983.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0087 a0002c0001t0001g0087	1	280	0.0036	20	c.243 others(41): Show c.2433+11878_2433+11879insCTTCTTTCTTTCTTTCTTTC	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140941202	C C	CCTTTCTT others(13): Show CCTTTCTTCCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0008 a0001c0003t0008	a0001c0003t0008g0239 a0001c0003t0008g0239	1	280	0.0036	20	c.243 others(41): Show c.2433+11884_2433+11885insCCTTTCTTTCTTTCTTTCTT	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140941202	C C	CCTTTCTT others(13): Show CCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02148.hp1 NA18941.hp1 others(3): Show HG02145.hp1 HG02148.hp1 NA18941.hp1 NA19060.hp2 NA19065.hp1 NA19077.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0004 a0002c0001t0006 a0002c0001t0001 a0002c0001t0004 a0002c0001t0006	a0002c0001t0001g0004 a0002c0001t0001g0022 a0002c0001t0001g0075 others(3): Show a0002c0001t0001g0004 a0002c0001t0001g0022 a0002c0001t0001g0075 a0002c0001t0001g0095 a0002c0001t0004g0074 a0002c0001t0006g0076	6	280	0.0214	20	c.243 others(41): Show c.2433+11888_2433+11889insTCTTTCTTTCTTTCTTTCTT	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140941214	C C	CCTTTCTT others(13): Show CCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp1 HG00621.hp1 others(6): Show HG00280.hp2 HG00323.hp1 HG00621.hp1 HG01433.hp1 HG01517.hp2 HG02109.hp2 HG02293.hp2 NA18977.hp2 NA18991.hp2	a0002 a0002	a0002c0001 a0002c0006 a0002c0001 a0002c0006	a0002c0001t0003 a0002c0006t0003 a0002c0006t0027 a0002c0001t0003 a0002c0006t0003 a0002c0006t0027	a0002c0001t0003g0041 a0002c0001t0003g0042 a0002c0001t0003g0043 others(6): Show a0002c0001t0003g0041 a0002c0001t0003g0042 a0002c0001t0003g0043 a0002c0001t0003g0044 a0002c0001t0003g0045 a0002c0001t0003g0046 a0002c0001t0003g0105 a0002c0006t0003g0040 a0002c0006t0027g0039	9	280	0.0321	20	c.243 others(41): Show c.2433+11912_2433+11931dupTTCTTTCTTTCTTTCTTTCT	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140946611	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0008 a0001c0003t0008	a0001c0003t0008g0237 a0001c0003t0008g0237	1	280	0.0036	20	c.243 others(41): Show c.2433+17288_2433+17307dupTATATATATATATATATATA	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140946631	T T	TATATATA others(13): Show TATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0244 a0001c0003t0002g0244	1	280	0.0036	20	c.243 others(41): Show c.2433+17307_2433+17308insTATATATATATATATACACA	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140946631	T T	TATATATA others(13): Show TATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0007 a0001c0003t0007	a0001c0003t0007g0228 a0001c0003t0007g0228	1	280	0.0036	20	c.243 others(41): Show c.2433+17307_2433+17308insTATATATATATATATATACA	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHB10_chr5_141187353_141200647	141190658	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02071.hp1 NA19001.hp1 NA19087.hp1 HG02071.hp1 NA19001.hp1 NA19087.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0000 a0002c0002t0001g0000	3	456	0.0066	20	c.-18 others(31): Show c.-1895_-1894insAAAAAAAAAAAAAAAAAAAA	PCDHB10	ENSG00000120324.9	transcript	ENST00000239446.6	protein_coding		1694		chr5	TogoVar
PCDHB16_chr5_141177387_141191226	141190658	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02071.hp1 NA19001.hp1 NA19087.hp1 HG02071.hp1 NA19001.hp1 NA19087.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0013 a0002c0002t0001 a0002c0002t0013	a0002c0002t0001g0000 a0002c0002t0013g0000 a0002c0002t0001g0000 a0002c0002t0013g0000	3	452	0.0066	20	c.57 others(31): Show c.5768_*5769insAAAAAAAAAAAAAAAAAAAA	PCDHB16	ENSG00000272674.4	transcript	ENST00000609684.3	protein_coding		4433		chr5	TogoVar
PCDHB9_chr5_141182161_141196541	141190658	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02071.hp1 NA19001.hp1 NA19087.hp1 HG02071.hp1 NA19001.hp1 NA19087.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0032 a0002c0001t0039 a0002c0001t0032 a0002c0001t0039	a0002c0001t0032g0000 a0002c0001t0039g0000 a0002c0001t0032g0000 a0002c0001t0039g0000	3	458	0.0066	20	c.96 others(29): Show c.962_*963insAAAAAAAAAAAAAAAAAAAA	PCDHB9	ENSG00000177839.7	transcript	ENST00000316105.7	protein_coding	1/1	963	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA10_chr5_141407987_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0188 a0001c0001t0001g0188	1	306	0.0033	20	c.-23 others(31): Show c.-2327_-2326insTTTTTTTTTTTTTTTTTTTT	PCDHGA10	ENSG00000253846.3	transcript	ENST00000398610.3	protein_coding		2137		chr5	TogoVar
PCDHGA10_chr5_141407987_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0042 a0001c0001t0006g0042	1	306	0.0033	20	c.243 others(41): Show c.2436+39195_2436+39214dupTTTTTTTTTTTTTTTTTTTT	PCDHGA10	ENSG00000253846.3	transcript	ENST00000398610.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA10_chr5_141407987_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0203 a0001c0001t0001g0203	1	306	0.0033	20	c.249 others(39): Show c.2495+4144_2495+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGA10	ENSG00000253846.3	transcript	ENST00000398610.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA11_chr5_141416051_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp2 NA18994.hp2 HG01978.hp2 NA18994.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0007 a0002c0002t0002 a0002c0002t0007	a0002c0002t0002g0005 a0002c0002t0007g0017 a0002c0002t0002g0005 a0002c0002t0007g0017	2	310	0.0065	20	c.243 others(41): Show c.2433+31146_2433+31165dupTTTTTTTTTTTTTTTTTTTT	PCDHGA11	ENSG00000253873.6	transcript	ENST00000398587.7	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA11_chr5_141416051_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0091 a0001c0001t0001g0091	1	310	0.0032	20	c.249 others(39): Show c.2492+4144_2492+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGA11	ENSG00000253873.6	transcript	ENST00000398587.7	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA12_chr5_141425507_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp2 NA18994.hp2 HG01978.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0014 a0001c0001t0006g0172 a0001c0001t0003g0014 a0001c0001t0006g0172	2	318	0.0063	20	c.242 others(41): Show c.2424+21623_2424+21642dupTTTTTTTTTTTTTTTTTTTT	PCDHGA12	ENSG00000253159.3	transcript	ENST00000252085.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA12_chr5_141425507_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0288 a0001c0001t0001g0288	1	318	0.0031	20	c.248 others(39): Show c.2483+4144_2483+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGA12	ENSG00000253159.3	transcript	ENST00000252085.4	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA1_chr5_141325514_141517975	141347137	C C	CTCTTTCT others(13): Show CTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG00738.hp1 HG01255.hp1 others(25): Show HG00673.hp1 HG00738.hp1 HG01255.hp1 HG01496.hp2 HG01884.hp1 HG01891.hp1 HG01978.hp1 HG01978.hp2 HG02132.hp2 HG02257.hp1 HG02451.hp2 HG02615.hp1 HG02622.hp2 HG02723.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG03209.hp1 HG03492.hp1 HG03704.hp2 NA18522.hp2 NA18941.hp1 NA18965.hp1 NA19000.hp2 NA19007.hp2 NA19057.hp2 NA20129.hp2	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0005 a0006 a0007 a0008 a0010	a0001c0001 a0001c0002 a0001c0015 others(7): Show a0001c0001 a0001c0002 a0001c0015 a0002c0003 a0003c0004 a0005c0006 a0006c0009 a0007c0010 a0008c0011 a0010c0017	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(13): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0002t0001 a0001c0002t0005 a0001c0015t0001 a0002c0003t0001 a0002c0003t0003 a0002c0003t0006 a0002c0003t0013 a0003c0004t0002 a0005c0006t0001 a0006c0009t0003 a0007c0010t0006 a0008c0011t0001 a0010c0017t0008	a0001c0001t0001g0010 a0001c0001t0001g0049 a0001c0001t0001g0095 others(25): Show a0001c0001t0001g0010 a0001c0001t0001g0049 a0001c0001t0001g0095 a0001c0001t0001g0179 a0001c0001t0001g0209 a0001c0001t0002g0162 a0001c0001t0003g0016 a0001c0001t0003g0017 a0001c0001t0003g0067 a0001c0001t0003g0099 a0001c0001t0003g0163 a0001c0002t0001g0023 a0001c0002t0001g0262 a0001c0002t0001g0264 a0001c0002t0005g0024 a0001c0002t0005g0219 a0001c0015t0001g0085 a0002c0003t0001g0200 a0002c0003t0003g0198 a0002c0003t0006g0188 a0002c0003t0013g0199 a0003c0004t0002g0249 a0005c0006t0001g0174 a0005c0006t0001g0175 a0006c0009t0003g0091 a0007c0010t0006g0189 a0008c0011t0001g0084 a0010c0017t0008g0252	28	268	0.1045	20	c.242 others(41): Show c.2421+14057_2421+14076dupTCTTTCTTTCTTTCTTTCTT	PCDHGA1	ENSG00000204956.6	transcript	ENST00000517417.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA1_chr5_141325514_141517975	141379889	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01258.hp2 NA20905.hp2 HG01255.hp1 HG01258.hp2 NA20905.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0005 a0001c0001 a0004c0005	a0001c0001t0002 a0004c0005t0004 a0001c0001t0002 a0004c0005t0004	a0001c0001t0002g0060 a0001c0001t0002g0162 a0004c0005t0004g0027 a0001c0001t0002g0060 a0001c0001t0002g0162 a0004c0005t0004g0027	3	268	0.0112	20	c.242 others(41): Show c.2421+46795_2421+46814dupTTTTTTTTTTTTTTTTTTTT	PCDHGA1	ENSG00000204956.6	transcript	ENST00000517417.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA1_chr5_141325514_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0021 a0001c0002t0001g0021	1	268	0.0037	20	c.242 others(41): Show c.2421+77747_2421+77766dupTTTTTTTTTTTTTTTTTTTT	PCDHGA1	ENSG00000204956.6	transcript	ENST00000517417.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA1_chr5_141325514_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 NA18994.hp2 HG01978.hp1 NA18994.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0003 a0002c0003t0006 a0001c0001t0003 a0002c0003t0006	a0001c0001t0003g0099 a0002c0003t0006g0187 a0001c0001t0003g0099 a0002c0003t0006g0187	2	268	0.0075	20	c.242 others(41): Show c.2422-40001_2422-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGA1	ENSG00000204956.6	transcript	ENST00000517417.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA2_chr5_141333760_141517975	141347137	C C	CTCTTTCT others(13): Show CTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG00738.hp1 HG01255.hp1 others(25): Show HG00673.hp1 HG00738.hp1 HG01255.hp1 HG01496.hp2 HG01884.hp1 HG01891.hp2 HG01978.hp1 HG01978.hp2 HG02132.hp2 HG02257.hp2 HG02451.hp2 HG02615.hp2 HG02622.hp2 HG02723.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG03209.hp1 HG03492.hp1 HG03704.hp1 NA18522.hp1 NA18941.hp2 NA18965.hp1 NA19000.hp2 NA19007.hp1 NA19057.hp1 NA20129.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	a0001c0001 a0001c0004 a0001c0018 others(4): Show a0001c0001 a0001c0004 a0001c0018 a0002c0002 a0003c0003 a0004c0005 a0006c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0012 a0001c0004t0003 a0001c0018t0001 a0002c0002t0002 a0002c0002t0003 a0003c0003t0001 a0003c0003t0004 a0004c0005t0001 a0006c0007t0001	a0001c0001t0001g0001 a0001c0001t0001g0018 a0001c0001t0001g0038 others(25): Show a0001c0001t0001g0001 a0001c0001t0001g0018 a0001c0001t0001g0038 a0001c0001t0001g0074 a0001c0001t0001g0090 a0001c0001t0001g0093 a0001c0001t0001g0176 a0001c0001t0002g0132 a0001c0001t0003g0050 a0001c0001t0003g0088 a0001c0001t0003g0089 a0001c0001t0003g0091 a0001c0001t0003g0104 a0001c0001t0004g0177 a0001c0001t0006g0064 a0001c0001t0006g0065 a0001c0001t0007g0166 a0001c0001t0012g0092 a0001c0004t0003g0045 a0001c0018t0001g0040 a0002c0002t0002g0253 a0002c0002t0003g0254 a0003c0003t0001g0148 a0003c0003t0001g0167 a0003c0003t0004g0149 a0004c0005t0001g0037 a0004c0005t0001g0039 a0006c0007t0001g0017	28	272	0.1029	20	c.242 others(39): Show c.2424+5767_2424+5786dupTCTTTCTTTCTTTCTTTCTT	PCDHGA2	ENSG00000081853.15	transcript	ENST00000394576.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA2_chr5_141333760_141517975	141379889	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01258.hp2 NA20905.hp1 HG01255.hp1 HG01258.hp2 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0002c0002 a0001c0001 a0001c0004 a0002c0002	a0001c0001t0005 a0001c0004t0002 a0002c0002t0002 a0001c0001t0005 a0001c0004t0002 a0002c0002t0002	a0001c0001t0005g0180 a0001c0004t0002g0023 a0002c0002t0002g0253 a0001c0001t0005g0180 a0001c0004t0002g0023 a0002c0002t0002g0253	3	272	0.0110	20	c.242 others(41): Show c.2424+38505_2424+38524dupTTTTTTTTTTTTTTTTTTTT	PCDHGA2	ENSG00000081853.15	transcript	ENST00000394576.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA2_chr5_141333760_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0175 a0001c0001t0001g0175	1	272	0.0037	20	c.242 others(41): Show c.2424+69457_2424+69476dupTTTTTTTTTTTTTTTTTTTT	PCDHGA2	ENSG00000081853.15	transcript	ENST00000394576.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA2_chr5_141333760_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp2 NA18994.hp2 HG01978.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0104 a0001c0001t0006g0063 a0001c0001t0003g0104 a0001c0001t0006g0063	2	272	0.0074	20	c.242 others(41): Show c.2425-40001_2425-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGA2	ENSG00000081853.15	transcript	ENST00000394576.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA2_chr5_141333760_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0168 a0003c0003t0001g0168	1	272	0.0037	20	c.248 others(39): Show c.2483+4144_2483+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGA2	ENSG00000081853.15	transcript	ENST00000394576.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA3_chr5_141338829_141517975	141347137	C C	CTCTTTCT others(13): Show CTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG00738.hp1 HG01255.hp1 others(25): Show HG00673.hp2 HG00738.hp1 HG01255.hp1 HG01496.hp2 HG01884.hp1 HG01891.hp2 HG01978.hp1 HG01978.hp2 HG02132.hp1 HG02257.hp1 HG02451.hp2 HG02615.hp2 HG02622.hp2 HG02723.hp2 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG03209.hp2 HG03492.hp2 HG03704.hp1 NA18522.hp1 NA18941.hp2 NA18965.hp2 NA19000.hp2 NA19007.hp1 NA19057.hp2 NA20129.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0009 a0012	a0001c0001 a0001c0005 a0001c0015 others(5): Show a0001c0001 a0001c0005 a0001c0015 a0002c0002 a0003c0007 a0004c0004 a0009c0016 a0012c0019	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0012 a0001c0005t0001 a0001c0005t0008 a0001c0015t0001 a0002c0002t0001 a0003c0007t0002 a0003c0007t0003 a0004c0004t0006 a0009c0016t0003 a0012c0019t0001	a0001c0001t0001g0185 a0001c0001t0001g0194 a0001c0001t0001g0199 others(25): Show a0001c0001t0001g0185 a0001c0001t0001g0194 a0001c0001t0001g0199 a0001c0001t0001g0203 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0002g0195 a0001c0001t0003g0191 a0001c0001t0003g0192 a0001c0001t0003g0193 a0001c0001t0003g0200 a0001c0001t0003g0201 a0001c0001t0004g0202 a0001c0001t0004g0204 a0001c0001t0012g0205 a0001c0005t0001g0186 a0001c0005t0001g0187 a0001c0005t0001g0188 a0001c0005t0001g0189 a0001c0005t0008g0012 a0001c0015t0001g0190 a0002c0002t0001g0184 a0003c0007t0002g0010 a0003c0007t0003g0011 a0004c0004t0006g0197 a0004c0004t0006g0198 a0009c0016t0003g0196 a0012c0019t0001g0183	28	270	0.1037	20	c.242 others(37): Show c.2424+705_2424+724dupTCTTTCTTTCTTTCTTTCTT	PCDHGA3	ENSG00000254245.3	transcript	ENST00000253812.8	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA3_chr5_141338829_141517975	141379889	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01258.hp2 NA20905.hp2 HG01255.hp1 HG01258.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	a0001c0001t0002g0195 a0001c0001t0002g0215 a0001c0001t0005g0228 a0001c0001t0002g0195 a0001c0001t0002g0215 a0001c0001t0005g0228	3	270	0.0111	20	c.242 others(41): Show c.2424+33443_2424+33462dupTTTTTTTTTTTTTTTTTTTT	PCDHGA3	ENSG00000254245.3	transcript	ENST00000253812.8	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA3_chr5_141338829_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0025 a0001c0001t0001g0025	1	270	0.0037	20	c.242 others(41): Show c.2424+64395_2424+64414dupTTTTTTTTTTTTTTTTTTTT	PCDHGA3	ENSG00000254245.3	transcript	ENST00000253812.8	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA3_chr5_141338829_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp2 NA18994.hp2 HG01978.hp2 NA18994.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0003 a0004c0004t0006 a0001c0001t0003 a0004c0004t0006	a0001c0001t0003g0193 a0004c0004t0006g0177 a0001c0001t0003g0193 a0004c0004t0006g0177	2	270	0.0074	20	c.242 others(41): Show c.2425-40001_2425-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGA3	ENSG00000254245.3	transcript	ENST00000253812.8	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA3_chr5_141338829_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0210 a0001c0005t0001g0210	1	270	0.0037	20	c.248 others(39): Show c.2483+4144_2483+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGA3	ENSG00000254245.3	transcript	ENST00000253812.8	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA4_chr5_141350021_141517975	141379889	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01258.hp2 NA20905.hp1 HG01255.hp2 HG01258.hp2 NA20905.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0002 a0003c0003t0005 a0001c0001t0002 a0003c0003t0005	a0001c0001t0002g0086 a0001c0001t0002g0087 a0003c0003t0005g0048 a0001c0001t0002g0086 a0001c0001t0002g0087 a0003c0003t0005g0048	3	274	0.0110	20	c.251 others(41): Show c.2514+22279_2514+22298dupTTTTTTTTTTTTTTTTTTTT	PCDHGA4	ENSG00000262576.3	transcript	ENST00000571252.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA4_chr5_141350021_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0009	1	274	0.0037	20	c.251 others(41): Show c.2514+53231_2514+53250dupTTTTTTTTTTTTTTTTTTTT	PCDHGA4	ENSG00000262576.3	transcript	ENST00000571252.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA4_chr5_141350021_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 NA18994.hp1 HG01978.hp1 NA18994.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0007 a0001c0001t0006g0196 a0001c0001t0003g0007 a0001c0001t0006g0196	2	274	0.0073	20	c.251 others(41): Show c.2515-40001_2515-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGA4	ENSG00000262576.3	transcript	ENST00000571252.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA4_chr5_141350021_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0016 a0004c0004t0001g0016	1	274	0.0037	20	c.257 others(39): Show c.2573+4144_2573+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGA4	ENSG00000262576.3	transcript	ENST00000571252.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar

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