Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PCDHGA5_chr5_141359162_141517975	141379889	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01258.hp1 NA20905.hp1 HG01255.hp1 HG01258.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0005g0021 a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0005g0021	3	292	0.0103	20	c.242 others(41): Show c.2421+13149_2421+13168dupTTTTTTTTTTTTTTTTTTTT	PCDHGA5	ENSG00000253485.3	transcript	ENST00000518069.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA5_chr5_141359162_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0240 a0001c0001t0001g0240	1	292	0.0034	20	c.242 others(41): Show c.2421+44101_2421+44120dupTTTTTTTTTTTTTTTTTTTT	PCDHGA5	ENSG00000253485.3	transcript	ENST00000518069.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA5_chr5_141359162_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp2 NA18994.hp2 HG01978.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0285 a0001c0001t0006g0262 a0001c0001t0003g0285 a0001c0001t0006g0262	2	292	0.0069	20	c.242 others(41): Show c.2422-40001_2422-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGA5	ENSG00000253485.3	transcript	ENST00000518069.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA5_chr5_141359162_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0001 a0002c0004t0001	a0002c0004t0001g0263 a0002c0004t0001g0263	1	292	0.0034	20	c.248 others(39): Show c.2480+4144_2480+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGA5	ENSG00000253485.3	transcript	ENST00000518069.2	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA6_chr5_141368891_141517975	141379889	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01258.hp2 NA19080.hp1 others(1): Show HG01255.hp2 HG01258.hp2 NA19080.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005	a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0004g0104 others(1): Show a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0004g0104 a0001c0001t0005g0054	4	292	0.0137	20	c.242 others(39): Show c.2424+3393_2424+3412dupTTTTTTTTTTTTTTTTTTTT	PCDHGA6	ENSG00000253731.3	transcript	ENST00000517434.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA6_chr5_141368891_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0185 a0001c0001t0001g0185	1	292	0.0034	20	c.242 others(41): Show c.2424+34345_2424+34364dupTTTTTTTTTTTTTTTTTTTT	PCDHGA6	ENSG00000253731.3	transcript	ENST00000517434.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA6_chr5_141368891_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 NA18994.hp2 HG01978.hp1 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0219 a0001c0001t0006g0222 a0001c0001t0003g0219 a0001c0001t0006g0222	2	292	0.0069	20	c.242 others(41): Show c.2425-40001_2425-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGA6	ENSG00000253731.3	transcript	ENST00000517434.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA6_chr5_141368891_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0242 a0001c0001t0001g0242	1	292	0.0034	20	c.248 others(39): Show c.2483+4144_2483+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGA6	ENSG00000253731.3	transcript	ENST00000517434.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA7_chr5_141377742_141517975	141379889	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01255.hp2 HG01258.hp1 NA19080.hp2 others(1): Show HG01255.hp2 HG01258.hp1 NA19080.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005	a0001c0001t0002g0196 a0001c0001t0002g0237 a0001c0001t0004g0154 others(1): Show a0001c0001t0002g0196 a0001c0001t0002g0237 a0001c0001t0004g0154 a0001c0001t0005g0052	4	292	0.0137	20	c.-30 others(31): Show c.-3011_-3010insTTTTTTTTTTTTTTTTTTTT	PCDHGA7	ENSG00000253537.3	transcript	ENST00000518325.2	protein_coding		2852		chr5	TogoVar
PCDHGA7_chr5_141377742_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0231 a0001c0001t0001g0231	1	292	0.0034	20	c.242 others(41): Show c.2424+25529_2424+25548dupTTTTTTTTTTTTTTTTTTTT	PCDHGA7	ENSG00000253537.3	transcript	ENST00000518325.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA7_chr5_141377742_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0006 a0003c0003t0006	a0003c0003t0006g0013 a0003c0003t0006g0013	1	292	0.0034	20	c.242 others(41): Show c.2425-40001_2425-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGA7	ENSG00000253537.3	transcript	ENST00000518325.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA7_chr5_141377742_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0229 a0001c0001t0001g0229	1	292	0.0034	20	c.248 others(39): Show c.2483+4144_2483+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGA7	ENSG00000253537.3	transcript	ENST00000518325.2	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA8_chr5_141387633_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0244 a0001c0001t0001g0244	1	302	0.0033	20	c.242 others(41): Show c.2424+15615_2424+15634dupTTTTTTTTTTTTTTTTTTTT	PCDHGA8	ENSG00000253767.3	transcript	ENST00000398604.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA8_chr5_141387633_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0006 a0003c0003t0006	a0003c0003t0006g0164 a0003c0003t0006g0164	1	302	0.0033	20	c.242 others(41): Show c.2425-40001_2425-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGA8	ENSG00000253767.3	transcript	ENST00000398604.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA8_chr5_141387633_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0235 a0001c0001t0001g0235	1	302	0.0033	20	c.248 others(39): Show c.2483+4144_2483+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGA8	ENSG00000253767.3	transcript	ENST00000398604.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA9_chr5_141397778_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0009 a0009	a0009c0013 a0009c0013	a0009c0013t0001 a0009c0013t0001	a0009c0013t0001g0188 a0009c0013t0001g0188	1	302	0.0033	20	c.242 others(39): Show c.2424+5476_2424+5495dupTTTTTTTTTTTTTTTTTTTT	PCDHGA9	ENSG00000261934.3	transcript	ENST00000573521.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA9_chr5_141397778_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0006 a0001c0004t0006	a0001c0004t0006g0209 a0001c0004t0006g0209	1	302	0.0033	20	c.242 others(41): Show c.2425-40001_2425-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGA9	ENSG00000261934.3	transcript	ENST00000573521.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA9_chr5_141397778_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0174 a0001c0002t0001g0174	1	302	0.0033	20	c.248 others(39): Show c.2483+4144_2483+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGA9	ENSG00000261934.3	transcript	ENST00000573521.2	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB1_chr5_141345099_141517975	141347137	C C	CTCTTTCT others(13): Show CTCTTTCTTTCTTTCTTTCTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00673.hp2 HG00738.hp1 HG01255.hp1 others(24): Show HG00673.hp2 HG00738.hp1 HG01255.hp1 HG01496.hp2 HG01884.hp1 HG01891.hp1 HG01978.hp1 HG01978.hp2 HG02132.hp1 HG02257.hp1 HG02451.hp2 HG02615.hp2 HG02622.hp2 HG02723.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG03209.hp1 HG03492.hp2 HG03704.hp2 NA18522.hp2 NA18941.hp1 NA18965.hp2 NA19000.hp1 NA19007.hp1 NA19057.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0015	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0012 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0003t0001 a0001c0003t0004 a0001c0005t0001 a0001c0005t0007 a0001c0015t0001	a0001c0001t0001g0115 a0001c0001t0001g0126 a0001c0001t0001g0222 others(24): Show a0001c0001t0001g0115 a0001c0001t0001g0126 a0001c0001t0001g0222 a0001c0001t0001g0245 a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0098 a0001c0001t0002g0182 a0001c0001t0002g0251 a0001c0001t0002g0253 a0001c0001t0003g0151 a0001c0001t0004g0255 a0001c0001t0006g0219 a0001c0001t0006g0220 a0001c0001t0012g0227 a0001c0002t0001g0267 a0001c0002t0002g0047 a0001c0002t0003g0042 a0001c0003t0001g0074 a0001c0003t0001g0159 a0001c0003t0004g0076 a0001c0005t0001g0053 a0001c0005t0001g0056 a0001c0005t0001g0057 a0001c0005t0001g0092 a0001c0005t0007g0095 a0001c0015t0001g0093	27	278	0.0971	20	c.-31 others(31): Show c.-3124_-3123insTCTTTCTTTCTTTCTTTCTT	PCDHGB1	ENSG00000254221.3	transcript	ENST00000523390.2	protein_coding		2961		chr5	TogoVar
PCDHGB1_chr5_141345099_141517975	141379889	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01258.hp2 NA20905.hp1 HG01255.hp1 HG01258.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0003 a0001c0003t0005 a0001c0001t0003 a0001c0003t0005	a0001c0001t0003g0151 a0001c0001t0003g0152 a0001c0003t0005g0080 a0001c0001t0003g0151 a0001c0001t0003g0152 a0001c0003t0005g0080	3	278	0.0108	20	c.240 others(41): Show c.2409+27231_2409+27250dupTTTTTTTTTTTTTTTTTTTT	PCDHGB1	ENSG00000254221.3	transcript	ENST00000523390.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB1_chr5_141345099_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0100 a0001c0001t0001g0100	1	278	0.0036	20	c.240 others(41): Show c.2409+58183_2409+58202dupTTTTTTTTTTTTTTTTTTTT	PCDHGB1	ENSG00000254221.3	transcript	ENST00000523390.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB1_chr5_141345099_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 NA18994.hp1 HG01978.hp1 NA18994.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0002 a0001c0001t0006	a0001c0001t0002g0098 a0001c0001t0006g0237 a0001c0001t0002g0098 a0001c0001t0006g0237	2	278	0.0072	20	c.241 others(41): Show c.2410-40001_2410-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGB1	ENSG00000254221.3	transcript	ENST00000523390.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB1_chr5_141345099_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0096 a0001c0005t0001g0096	1	278	0.0036	20	c.246 others(39): Show c.2468+4144_2468+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGB1	ENSG00000254221.3	transcript	ENST00000523390.2	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB2_chr5_141354994_141517975	141379889	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01258.hp2 NA20905.hp1 HG01255.hp2 HG01258.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	a0001c0001t0002g0068 a0001c0001t0002g0069 a0001c0001t0005g0019 a0001c0001t0002g0068 a0001c0001t0002g0069 a0001c0001t0005g0019	3	288	0.0104	20	c.242 others(41): Show c.2421+17344_2421+17363dupTTTTTTTTTTTTTTTTTTTT	PCDHGB2	ENSG00000253910.3	transcript	ENST00000522605.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB2_chr5_141354994_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	288	0.0035	20	c.242 others(41): Show c.2421+48296_2421+48315dupTTTTTTTTTTTTTTTTTTTT	PCDHGB2	ENSG00000253910.3	transcript	ENST00000522605.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB2_chr5_141354994_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 NA18994.hp2 HG01978.hp1 NA18994.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0006 a0002c0002t0003 a0002c0002t0006	a0002c0002t0003g0214 a0002c0002t0006g0193 a0002c0002t0003g0214 a0002c0002t0006g0193	2	288	0.0069	20	c.242 others(41): Show c.2422-40001_2422-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGB2	ENSG00000253910.3	transcript	ENST00000522605.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB2_chr5_141354994_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0229 a0001c0001t0001g0229	1	288	0.0035	20	c.248 others(39): Show c.2480+4144_2480+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGB2	ENSG00000253910.3	transcript	ENST00000522605.2	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB3_chr5_141365242_141517975	141379889	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01258.hp1 NA19080.hp1 others(1): Show HG01255.hp2 HG01258.hp1 NA19080.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005	a0001c0001t0002g0052 a0001c0001t0002g0053 a0001c0001t0004g0089 others(1): Show a0001c0001t0002g0052 a0001c0001t0002g0053 a0001c0001t0004g0089 a0001c0001t0005g0060	4	296	0.0135	20	c.241 others(39): Show c.2415+7091_2415+7110dupTTTTTTTTTTTTTTTTTTTT	PCDHGB3	ENSG00000262209.3	transcript	ENST00000576222.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB3_chr5_141365242_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0163 a0001c0001t0001g0163	1	296	0.0034	20	c.241 others(41): Show c.2415+38043_2415+38062dupTTTTTTTTTTTTTTTTTTTT	PCDHGB3	ENSG00000262209.3	transcript	ENST00000576222.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB3_chr5_141365242_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 NA18994.hp2 HG01978.hp1 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0191 a0001c0001t0006g0194 a0001c0001t0003g0191 a0001c0001t0006g0194	2	296	0.0068	20	c.241 others(41): Show c.2416-40001_2416-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGB3	ENSG00000262209.3	transcript	ENST00000576222.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB3_chr5_141365242_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0212 a0001c0001t0001g0212	1	296	0.0034	20	c.247 others(39): Show c.2474+4144_2474+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGB3	ENSG00000262209.3	transcript	ENST00000576222.2	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB4_chr5_141382698_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0223 a0001c0001t0001g0223	1	294	0.0034	20	c.239 others(41): Show c.2397+20571_2397+20590dupTTTTTTTTTTTTTTTTTTTT	PCDHGB4	ENSG00000253953.3	transcript	ENST00000519479.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB4_chr5_141382698_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0101 a0001c0001t0006g0101	1	294	0.0034	20	c.239 others(41): Show c.2398-40001_2398-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGB4	ENSG00000253953.3	transcript	ENST00000519479.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB4_chr5_141382698_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0219 a0001c0001t0001g0219	1	294	0.0034	20	c.245 others(39): Show c.2456+4144_2456+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGB4	ENSG00000253953.3	transcript	ENST00000519479.2	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB5_chr5_141392947_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0014 a0014	a0014c0016 a0014c0016	a0014c0016t0001 a0014c0016t0001	a0014c0016t0001g0119 a0014c0016t0001g0119	1	300	0.0033	20	c.239 others(41): Show c.2397+10328_2397+10347dupTTTTTTTTTTTTTTTTTTTT	PCDHGB5	ENSG00000276547.2	transcript	ENST00000617380.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB5_chr5_141392947_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18994.hp2 NA18994.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0008 a0002c0002t0008	a0002c0002t0008g0039 a0002c0002t0008g0039	1	300	0.0033	20	c.239 others(41): Show c.2398-40001_2398-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGB5	ENSG00000276547.2	transcript	ENST00000617380.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB5_chr5_141392947_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0277 a0001c0001t0001g0277	1	300	0.0033	20	c.245 others(39): Show c.2456+4144_2456+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGB5	ENSG00000276547.2	transcript	ENST00000617380.2	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB6_chr5_141403021_141517975	141410849	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0300 a0001c0001t0001g0300	1	302	0.0033	20	c.241 others(37): Show c.2418+232_2418+251dupTTTTTTTTTTTTTTTTTTTT	PCDHGB6	ENSG00000253305.3	transcript	ENST00000520790.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB6_chr5_141403021_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0004 a0002c0002t0006g0004	1	302	0.0033	20	c.241 others(41): Show c.2419-40001_2419-39982dupTTTTTTTTTTTTTTTTTTTT	PCDHGB6	ENSG00000253305.3	transcript	ENST00000520790.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB6_chr5_141403021_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0281 a0001c0001t0001g0281	1	302	0.0033	20	c.247 others(39): Show c.2477+4144_2477+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGB6	ENSG00000253305.3	transcript	ENST00000520790.2	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB7_chr5_141412677_141517975	141454796	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18994.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0046 a0001c0001t0007g0046	1	306	0.0033	20	c.241 others(41): Show c.2415+34532_2415+34551dupTTTTTTTTTTTTTTTTTTTT	PCDHGB7	ENSG00000254122.3	transcript	ENST00000398594.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB7_chr5_141412677_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0092 a0001c0001t0001g0092	1	306	0.0033	20	c.247 others(39): Show c.2474+4144_2474+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGB7	ENSG00000254122.3	transcript	ENST00000398594.4	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGC3_chr5_141470966_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0217 a0001c0001t0001g0217	1	350	0.0029	20	c.248 others(39): Show c.2489+4144_2489+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGC3	ENSG00000240184.7	transcript	ENST00000308177.5	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGC4_chr5_141480030_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0283 a0001c0001t0001g0283	1	354	0.0028	20	c.250 others(39): Show c.2501+4144_2501+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGC4	ENSG00000242419.6	transcript	ENST00000306593.2	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGC5_chr5_141484081_141517975	141498971	G G	GGGAAGGA others(13): Show GGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0212 a0001c0001t0001g0212	1	364	0.0028	20	c.251 others(39): Show c.2519+4144_2519+4163dupGAAGGAAGGAAGGAAGGAAG	PCDHGC5	ENSG00000240764.4	transcript	ENST00000252087.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCED1A_chr20_2830314_2845655	2842868	A A	AGATAGAT others(13): Show AGATAGATAGATGTATCTATC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02897.hp2 HG02922.hp1 HG02897.hp2 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0002	2	436	0.0046	20	c.-26 others(31): Show c.-2699_-2680dupGATAGATACATCTATCTATC	PCED1A	ENSG00000132635.17	transcript	ENST00000360652.7	protein_coding		2214		chr20	TogoVar
PCED1B_chr12_47074621_47241660	47089461	C C	CATGTATA others(13): Show CATGTATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00609.hp2 HG00642.hp1 others(8): Show HG00099.hp2 HG00609.hp2 HG00642.hp1 HG01255.hp2 HG02165.hp1 HG03927.hp2 NA18950.hp1 NA18951.hp1 NA18973.hp2 NA19002.hp2 NA19005.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0002t0002	a0001c0001t0001g0165 a0001c0001t0001g0190 a0001c0001t0001g0304 others(8): Show a0001c0001t0001g0165 a0001c0001t0001g0190 a0001c0001t0001g0304 a0001c0001t0002g0138 a0001c0001t0002g0157 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0195 a0001c0001t0006g0189 a0001c0002t0002g0194	11	322	0.0342	20	c.-60 others(39): Show c.-609+9738_-609+9739insGTATATATATATATATATAT	PCED1B	ENSG00000179715.13	transcript	ENST00000546455.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr12	TogoVar
PCGF3_chr4_700832_775089	701973	C C	CAAAGAAA others(13): Show CAAAGAAAAGAAAAGAAAAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp1 HG02622.hp1 HG02896.hp2 others(1): Show HG01243.hp1 HG02622.hp1 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0019 a0001c0001t0023 a0001c0001t0004 a0001c0001t0019 a0001c0001t0023	a0001c0001t0004g0264 a0001c0001t0004g0265 a0001c0001t0019g0357 others(1): Show a0001c0001t0004g0264 a0001c0001t0004g0265 a0001c0001t0019g0357 a0001c0001t0023g0285	4	366	0.0109	20	c.-41 others(31): Show c.-4187_-4186insAAAGAAAAGAAAAGAAAAGA	PCGF3	ENSG00000185619.19	transcript	ENST00000362003.10	protein_coding		3858		chr4	TogoVar
PCGF6_chr10_103297796_103356140	103302452	G G	GTTTTTTT others(13): Show GTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03139.hp1 HG03491.hp2 HG03492.hp2 others(3): Show HG03139.hp1 HG03491.hp2 HG03492.hp2 HG03942.hp2 HG04184.hp1 NA19240.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0014 a0002c0002t0001g0017 a0002c0002t0001g0042 others(3): Show a0002c0002t0001g0014 a0002c0002t0001g0017 a0002c0002t0001g0042 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0090	6	372	0.0161	20	c.14 others(31): Show c.1452_*1453insAAAAAAAAAAAAAAAAAAAA	PCGF6	ENSG00000156374.16	transcript	ENST00000369847.4	protein_coding		343		chr10	TogoVar
PCLO_chr7_82749012_83167884	82794459	C C	CTGTTTTT others(13): Show CTGTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0022 a0022	a0022c0070 a0022c0070	a0022c0070t0032 a0022c0070t0032	a0022c0070t0032g0024 a0022c0070t0032g0024	1	188	0.0053	20	c.150 others(41): Show c.15007+7058_15007+7059insAAAAAAAAAAAAAAAAAACA	PCLO	ENSG00000186472.20	transcript	ENST00000333891.14	protein_coding	22/24			chr7	TogoVar

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