Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PTPN14_chr1_214343700_214556602	214368196	T T	TTTTTTTA others(13): Show TTTTTTTAATTTATTTATTTA	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02922.hp1 HG02723.hp2 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0159 a0001c0001t0181 a0001c0001t0159 a0001c0001t0181	a0001c0001t0159g0241 a0001c0001t0181g0267 a0001c0001t0159g0241 a0001c0001t0181g0267	2	272	0.0074	20	c.327 others(39): Show c.3271+1260_3271+1261insTAAATAAATAAATTAAAAAA	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	17/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214395588	A A	AACACACA others(13): Show AACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18999.hp1 NA18999.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0083 a0001c0002t0083	a0001c0002t0083g0146 a0001c0002t0083g0146	1	272	0.0037	20	c.759 others(35): Show c.759-622_759-603dupGTGTGTGTGTGTGTGTGTGT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	8/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214402437	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG00741.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0131 a0001c0001t0131	a0001c0001t0131g0219 a0001c0001t0131g0219	1	272	0.0037	20	c.581 others(35): Show c.581+426_581+445dupTTTTTTTTTTTTTTTTTTTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	6/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214402671	A A	AAGGGAGG others(13): Show AAGGGAGGGAGGGAGGGAGGG	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02647.hp1 HG02572.hp1 HG02647.hp1	a0001 a0004 a0001 a0004	a0001c0006 a0004c0004 a0001c0006 a0004c0004	a0001c0006t0180 a0004c0004t0175 a0001c0006t0180 a0004c0004t0175	a0001c0006t0180g0272 a0004c0004t0175g0269 a0001c0006t0180g0272 a0004c0004t0175g0269	2	272	0.0074	20	c.581 others(35): Show c.581+211_581+212insCCCTCCCTCCCTCCCTCCCT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	6/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214450133	A A	AAAATAAA others(13): Show AAAATAAATAAATAAATAAAT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0069 a0001c0001t0008g0069	1	272	0.0037	20	c.344 others(37): Show c.344+1652_344+1671dupATTTATTTATTTATTTATTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	3/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214465951	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01071.hp2 HG01257.hp2 others(3): Show HG01071.hp1 HG01071.hp2 HG01257.hp2 HG02055.hp1 HG02451.hp1 HG03654.hp2	a0001 a0003 a0010 a0001 a0003 a0010	a0001c0001 a0001c0002 a0003c0016 others(1): Show a0001c0001 a0001c0002 a0003c0016 a0010c0021	a0001c0001t0026 a0001c0001t0032 a0001c0001t0140 others(3): Show a0001c0001t0026 a0001c0001t0032 a0001c0001t0140 a0001c0002t0013 a0003c0016t0001 a0010c0021t0085	a0001c0001t0026g0192 a0001c0001t0032g0061 a0001c0001t0140g0202 others(3): Show a0001c0001t0026g0192 a0001c0001t0032g0061 a0001c0001t0140g0202 a0001c0002t0013g0224 a0003c0016t0001g0035 a0010c0021t0085g0080	6	272	0.0221	20	c.-15 others(38): Show c.-154-1014_-154-995dupAAAAAAAAAAAAAAAAAAAA	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214490852	A A	AGGGAGGG others(13): Show AGGGAGGGGAGGGGAGGGGAG	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG02257.hp1 HG02293.hp2 others(11): Show HG02135.hp1 HG02257.hp1 HG02293.hp2 HG02486.hp1 HG02976.hp2 HG03139.hp2 HG03225.hp1 HG03579.hp2 NA18970.hp1 NA18972.hp1 NA18988.hp2 NA19002.hp2 NA19009.hp1 NA19043.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0014 others(1): Show a0001c0001 a0001c0002 a0001c0014 a0002c0003	a0001c0001t0002 a0001c0001t0017 a0001c0001t0103 others(7): Show a0001c0001t0002 a0001c0001t0017 a0001c0001t0103 a0001c0001t0110 a0001c0001t0173 a0001c0002t0006 a0001c0002t0078 a0001c0014t0154 a0002c0003t0023 a0002c0003t0186	a0001c0001t0002g0014 a0001c0001t0002g0015 a0001c0001t0002g0016 others(11): Show a0001c0001t0002g0014 a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0105 a0001c0001t0017g0189 a0001c0001t0103g0089 a0001c0001t0110g0088 a0001c0001t0173g0257 a0001c0002t0006g0103 a0001c0002t0078g0085 a0001c0014t0154g0198 a0002c0003t0023g0011 a0002c0003t0023g0169 a0002c0003t0186g0260	14	272	0.0515	20	c.-15 others(41): Show c.-154-25896_-154-25895insCTCCCCTCCCCTCCCCTCCC	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214506522	A A	AAAATAAA others(13): Show AAAATAAATAAATAAATAAAT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02615.hp1 HG02622.hp1 others(2): Show HG02145.hp1 HG02615.hp1 HG02622.hp1 HG02970.hp2 HG03130.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0018 a0002c0003 a0001c0001 a0001c0018 a0002c0003	a0001c0001t0024 a0001c0001t0090 a0001c0001t0141 others(2): Show a0001c0001t0024 a0001c0001t0090 a0001c0001t0141 a0001c0018t0014 a0002c0003t0086	a0001c0001t0024g0233 a0001c0001t0090g0027 a0001c0001t0141g0232 others(2): Show a0001c0001t0024g0233 a0001c0001t0090g0027 a0001c0001t0141g0232 a0001c0018t0014g0025 a0002c0003t0086g0026	5	272	0.0184	20	c.-15 others(41): Show c.-154-41585_-154-41566dupATTTATTTATTTATTTATTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214520065	A A	AAAAAAAA others(13): Show AAAAAAAAAAAAAATATATAT	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0024 a0001c0024	a0001c0024t0102 a0001c0024t0102	a0001c0024t0102g0078 a0001c0024t0102g0078	1	272	0.0037	20	c.-15 others(41): Show c.-155+31117_-155+31118insATATATATTTTTTTTTTTTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214520065	A A	AAAAAATA others(13): Show AAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG02083.hp2 HG03491.hp2 HG00597.hp2 HG02083.hp2 HG03491.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0009 a0001c0001t0017 a0001c0002t0006 a0001c0001t0009 a0001c0001t0017 a0001c0002t0006	a0001c0001t0009g0047 a0001c0001t0017g0068 a0001c0002t0006g0044 a0001c0001t0009g0047 a0001c0001t0017g0068 a0001c0002t0006g0044	3	272	0.0110	20	c.-15 others(41): Show c.-155+31117_-155+31118insATATATATATATATATTTTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214520065	A A	AAAATATA others(13): Show AAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG04184.hp1 NA18999.hp2 HG04184.hp1 NA18999.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0011 a0001c0001t0009 a0001c0001t0011	a0001c0001t0009g0058 a0001c0001t0011g0038 a0001c0001t0009g0058 a0001c0001t0011g0038	2	272	0.0074	20	c.-15 others(41): Show c.-155+31117_-155+31118insATATATATATATATATATTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214531499	A A	AACACACA others(13): Show AACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02155.hp1 HG04199.hp2 HG04228.hp2 others(2): Show HG02155.hp1 HG04199.hp2 HG04228.hp2 NA18747.hp2 NA18970.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0051 a0001c0001t0111 a0001c0001t0118 others(2): Show a0001c0001t0051 a0001c0001t0111 a0001c0001t0118 a0001c0002t0007 a0001c0002t0079	a0001c0001t0051g0165 a0001c0001t0111g0037 a0001c0001t0118g0040 others(2): Show a0001c0001t0051g0165 a0001c0001t0111g0037 a0001c0001t0118g0040 a0001c0002t0007g0060 a0001c0002t0079g0063	5	272	0.0184	20	c.-15 others(41): Show c.-155+19664_-155+19683dupGTGTGTGTGTGTGTGTGTGT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214534712	C C	CAATAAAT others(13): Show CAATAAATAAATAAATAAATA	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00621.hp1 HG01106.hp2 others(30): Show HG00423.hp1 HG00621.hp1 HG01106.hp2 HG02055.hp2 HG02080.hp1 HG02129.hp2 HG02280.hp2 HG02451.hp1 HG02559.hp1 HG03041.hp1 HG03139.hp2 HG03453.hp1 HG03540.hp2 HG03654.hp1 HG04184.hp1 HG04199.hp2 NA18944.hp1 NA18945.hp1 NA18955.hp2 NA18963.hp2 NA18969.hp2 NA18995.hp2 NA19002.hp2 NA19007.hp2 NA19009.hp1 NA19010.hp1 NA19030.hp1 NA19054.hp2 NA19064.hp2 NA19079.hp2 NA19084.hp1 NA19087.hp1 NA21309.hp2	a0001 a0002 a0010 a0001 a0002 a0010	a0001c0001 a0001c0002 a0001c0006 others(4): Show a0001c0001 a0001c0002 a0001c0006 a0001c0008 a0001c0024 a0002c0003 a0010c0021	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(25): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0001t0016 a0001c0001t0019 a0001c0001t0036 a0001c0001t0054 a0001c0001t0072 a0001c0001t0095 a0001c0001t0097 a0001c0001t0100 a0001c0001t0127 a0001c0001t0163 a0001c0001t0168 a0001c0001t0173 a0001c0001t0174 a0001c0002t0001 a0001c0002t0006 a0001c0002t0020 a0001c0002t0079 a0001c0006t0077 a0001c0008t0010 a0001c0024t0102 a0002c0003t0087 a0002c0003t0172 a0010c0021t0085	a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0059 others(30): Show a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0059 a0001c0001t0002g0101 a0001c0001t0003g0093 a0001c0001t0003g0102 a0001c0001t0005g0100 a0001c0001t0008g0002 a0001c0001t0009g0058 a0001c0001t0016g0114 a0001c0001t0019g0095 a0001c0001t0036g0160 a0001c0001t0054g0120 a0001c0001t0072g0113 a0001c0001t0095g0097 a0001c0001t0097g0094 a0001c0001t0100g0112 a0001c0001t0127g0238 a0001c0001t0163g0258 a0001c0001t0168g0250 a0001c0001t0173g0257 a0001c0001t0174g0263 a0001c0002t0001g0092 a0001c0002t0001g0096 a0001c0002t0006g0070 a0001c0002t0020g0057 a0001c0002t0079g0063 a0001c0006t0077g0072 a0001c0008t0010g0076 a0001c0024t0102g0078 a0002c0003t0087g0077 a0002c0003t0172g0254 a0010c0021t0085g0080	33	272	0.1213	20	c.-15 others(41): Show c.-155+16451_-155+16470dupTATTTATTTATTTATTTATT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18			chr1	TogoVar
PTPN14_chr1_214343700_214556602	214555709	T T	TTGTGTGT others(13): Show TTGTGTGTGTGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02976.hp1 HG03209.hp2 HG03579.hp2 HG02976.hp1 HG03209.hp2 HG03579.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0058 a0002c0003t0023 a0002c0003t0089 a0001c0001t0058 a0002c0003t0023 a0002c0003t0089	a0001c0001t0058g0009 a0002c0003t0023g0011 a0002c0003t0089g0010 a0001c0001t0058g0009 a0002c0003t0023g0011 a0002c0003t0089g0010	3	272	0.0110	20	c.-46 others(31): Show c.-4682_-4681insCACACACACACACACACACA	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding		4108		chr1	TogoVar
PTPN1_chr20_50505383_50590241	50506320	C C	CAAACAAA others(13): Show CAAACAAAACAAAACAAAACA	upstream_gene_variant upstream_gene_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0222 a0001c0001t0001g0222	1	336	0.0030	20	c.-42 others(31): Show c.-4208_-4207insAAACAAAACAAAACAAAACA	PTPN1	ENSG00000196396.10	transcript	ENST00000371621.5	protein_coding		4062		chr20	TogoVar
PTPN1_chr20_50505383_50590241	50524569	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02698.hp2 HG02717.hp1 HG02698.hp2 HG02717.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0008 a0001c0001 a0002c0008	a0001c0001t0001 a0002c0008t0001 a0001c0001t0001 a0002c0008t0001	a0001c0001t0001g0289 a0002c0008t0001g0278 a0001c0001t0001g0289 a0002c0008t0001g0278	2	336	0.0060	20	c.63+ others(37): Show c.63+13985_63+14004dupTTTTTTTTTTTTTTTTTTTT	PTPN1	ENSG00000196396.10	transcript	ENST00000371621.5	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr20	TogoVar
PTPN20_chr10_46906428_47007322	46911326	A A	AGCAGAGG others(13): Show AGCAGAGGGCCGCGGCGCAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19000.hp2 NA19000.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0219 a0001c0001t0002g0219	1	312	0.0032	20	c.-29 others(29): Show c.-299_-298insGCAGAGGGCCGCGGCGCAGG	PTPN20	ENSG00000204179.11	transcript	ENST00000374339.5	protein_coding		101		chr10	TogoVar
PTPN20_chr10_46906428_47007322	46947212	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0230 a0001c0001t0002g0230	1	312	0.0032	20	c.340 others(35): Show c.340+541_340+560dupATATATATATATATATATAT	PTPN20	ENSG00000204179.11	transcript	ENST00000374339.5	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
PTPN20_chr10_46906428_47007322	46953335	T T	TTTTCTTT others(13): Show TTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG02165.hp2 NA18998.hp2 HG00741.hp1 HG02165.hp2 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0084 a0001c0001t0001g0120 a0001c0001t0002g0210 a0001c0001t0001g0084 a0001c0001t0001g0120 a0001c0001t0002g0210	3	312	0.0096	20	c.340 others(37): Show c.340+6704_340+6723dupCTTTCTTTCTTTCTTTCTTT	PTPN20	ENSG00000204179.11	transcript	ENST00000374339.5	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
PTPN21_chr14_88460778_88560007	88518386	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG02165.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0200 a0001c0001t0001g0200	1	348	0.0029	20	c.181 others(37): Show c.181-1145_181-1126dupTATATATATATATATATATA	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	2/18			chr14	TogoVar
PTPN21_chr14_88460778_88560007	88518386	G G	GTGTATAT others(13): Show GTGTATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0201 a0001c0001t0001g0201	1	348	0.0029	20	c.181 others(37): Show c.181-1126_181-1125insTATATATATATATATATACA	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	2/18			chr14	TogoVar
PTPN21_chr14_88460778_88560007	88558466	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0008 a0008	a0008c0012 a0008c0012	a0008c0012t0007 a0008c0012t0007	a0008c0012t0007g0072 a0008c0012t0007g0072	1	348	0.0029	20	c.-40 others(31): Show c.-4019_-4018insTTTTTTTTTTTTTTTTTTTT	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding		3460		chr14	TogoVar
PTPN22_chr1_113808811_113876712	113826397	G G	GGGGAAGG others(13): Show GGGGAAGGGAAGGGAAGGGAA	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01099.hp2 HG01257.hp1 others(20): Show HG01081.hp2 HG01099.hp2 HG01257.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG03195.hp2 HG03225.hp2 HG03471.hp1 HG03471.hp2 HG03927.hp1 NA18906.hp2 NA18950.hp2 NA18972.hp2 NA18974.hp1 NA19074.hp1 NA19077.hp1 NA19081.hp2 NA19085.hp2 NA19091.hp2 NA19240.hp2 NA20300.hp1 NA20905.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0001c0001t0005 a0004c0004t0001 a0001c0001t0001 a0001c0001t0005 a0004c0004t0001	a0001c0001t0001g0026 a0001c0001t0001g0173 a0001c0001t0001g0178 others(19): Show a0001c0001t0001g0026 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0197 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0221 a0001c0001t0001g0232 a0001c0001t0001g0238 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0255 a0001c0001t0001g0258 a0001c0001t0001g0269 a0001c0001t0005g0211 a0004c0004t0001g0008 a0004c0004t0001g0176	23	358	0.0643	20	c.225 others(39): Show c.2251-1245_2251-1226dupTTCCCTTCCCTTCCCTTCCC	PTPN22	ENSG00000134242.16	transcript	ENST00000359785.10	protein_coding	18/20			chr1	TogoVar
PTPN23_chr3_47376021_47418435	47417894	G G	GGTGAGAG others(13): Show GGTGAGAGGGGCGGGGGAGAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19058.hp2 NA19058.hp2	a0006 a0006	a0006c0015 a0006c0015	a0006c0015t0001 a0006c0015t0001	a0006c0015t0001g0138 a0006c0015t0001g0138	1	332	0.0030	20	c.47 others(31): Show c.4709_*4710insGTGAGAGGGGCGGGGGAGAA	PTPN23	ENSG00000076201.16	transcript	ENST00000265562.5	protein_coding		4460		chr3	TogoVar
PTPN23_chr3_47376021_47418435	47417901	G G	GGGGGCGG others(13): Show GGGGGCGGGGGAGAAGTGAGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18972.hp2 NA19001.hp1 NA18972.hp2 NA19001.hp1	a0002 a0004 a0002 a0004	a0002c0033 a0004c0004 a0002c0033 a0004c0004	a0002c0033t0001 a0004c0004t0001 a0002c0033t0001 a0004c0004t0001	a0002c0033t0001g0133 a0004c0004t0001g0003 a0002c0033t0001g0133 a0004c0004t0001g0003	2	332	0.0060	20	c.47 others(31): Show c.4716_*4717insGGGGCGGGGGAGAAGTGAGA	PTPN23	ENSG00000076201.16	transcript	ENST00000265562.5	protein_coding		4467		chr3	TogoVar
PTPN2_chr18_12787152_12889237	12852191	A A	AACACACA others(13): Show AACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG02148.hp1 HG02148.hp2 HG01361.hp1 HG02148.hp1 HG02148.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0302 a0001c0001t0006g0253 a0001c0001t0006g0317 a0001c0001t0003g0302 a0001c0001t0006g0253 a0001c0001t0006g0317	3	370	0.0081	20	c.160 others(37): Show c.160+6953_160+6972dupGTGTGTGTGTGTGTGTGTGT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	2/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12870284	C C	CATATACA others(13): Show CATATACATATATATGTGTAT	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01256.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0308 a0001c0001t0003g0308	1	370	0.0027	20	c.70- others(37): Show c.70-11050_70-11031dupATACACATATATATGTATAT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN5_chr11_18722928_18796798	18746162	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01169.hp2 HG01168.hp1 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	2	388	0.0052	20	c.98- others(35): Show c.98-1983_98-1964dupATATATATATATATATATAT	PTPN5	ENSG00000110786.18	transcript	ENST00000358540.7	protein_coding	3/14			chr11	TogoVar
PTPN5_chr11_18722928_18796798	18746192	T T	TATATATA others(13): Show TATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01081.hp1 NA18995.hp2 HG01081.hp1 NA18995.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0017 a0002c0002t0001 a0002c0002t0017	a0002c0002t0001g0337 a0002c0002t0017g0376 a0002c0002t0001g0337 a0002c0002t0017g0376	2	388	0.0052	20	c.98- others(35): Show c.98-1994_98-1993insGTATATATATATATATATAT	PTPN5	ENSG00000110786.18	transcript	ENST00000358540.7	protein_coding	3/14			chr11	TogoVar
PTPN5_chr11_18722928_18796798	18777987	A A	AAAGGAAG others(13): Show AAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG03491.hp1 HG03492.hp2 HG03491.hp1 HG03492.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0010 a0002c0002t0001g0010	2	388	0.0052	20	c.-11 others(39): Show c.-113-5917_-113-5916insCCTTCCTTCCTTCCTTCCTT	PTPN5	ENSG00000110786.18	transcript	ENST00000358540.7	protein_coding	1/14			chr11	TogoVar
PTPN9_chr15_75458251_75584315	75537753	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00609.hp2 HG00621.hp1 others(37): Show HG00140.hp2 HG00609.hp2 HG00621.hp1 HG01109.hp1 HG01261.hp2 HG01496.hp1 HG02004.hp2 HG02132.hp1 HG02572.hp1 HG02698.hp2 HG02717.hp2 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02922.hp2 HG03017.hp2 HG03130.hp2 HG03669.hp1 HG03688.hp2 HG03834.hp2 HG04199.hp1 NA18522.hp2 NA18939.hp1 NA18943.hp1 NA18950.hp2 NA18966.hp1 NA18974.hp1 NA18986.hp2 NA18989.hp2 NA18990.hp1 NA18992.hp1 NA18993.hp2 NA18994.hp1 NA18998.hp2 NA19009.hp2 NA19043.hp2 NA19054.hp1 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(10): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0010 a0001c0001t0015 a0001c0001t0017 a0001c0001t0019 a0001c0001t0022 a0001c0001t0024 a0001c0001t0026 a0001c0001t0029 a0001c0001t0030 a0001c0005t0003	a0001c0001t0001g0047 a0001c0001t0001g0051 a0001c0001t0001g0052 others(37): Show a0001c0001t0001g0047 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0067 a0001c0001t0001g0070 a0001c0001t0001g0073 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0089 a0001c0001t0001g0100 a0001c0001t0001g0119 a0001c0001t0001g0141 a0001c0001t0001g0175 a0001c0001t0003g0008 a0001c0001t0003g0012 a0001c0001t0003g0013 a0001c0001t0003g0018 a0001c0001t0003g0019 a0001c0001t0003g0022 a0001c0001t0003g0023 a0001c0001t0003g0026 a0001c0001t0003g0029 a0001c0001t0003g0032 a0001c0001t0006g0313 a0001c0001t0006g0314 a0001c0001t0010g0011 a0001c0001t0015g0256 a0001c0001t0017g0152 a0001c0001t0019g0041 a0001c0001t0019g0056 a0001c0001t0022g0027 a0001c0001t0024g0034 a0001c0001t0026g0039 a0001c0001t0029g0084 a0001c0001t0030g0085 a0001c0005t0003g0016	40	326	0.1227	20	c.64- others(37): Show c.64-10512_64-10493dupTTTTTTTTTTTTTTTTTTTT	PTPN9	ENSG00000169410.11	transcript	ENST00000618819.5	protein_coding	1/12			chr15	TogoVar
PTPRA_chr20_2868481_3043669	2969978	T T	TAATAAAT others(13): Show TAATAAATAAATAAATAAATA	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02559.hp1 HG02602.hp1 others(1): Show HG02257.hp2 HG02559.hp1 HG02602.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0006 a0001c0011 a0002c0005 a0001c0006 a0001c0011 a0002c0005	a0001c0006t0001 a0001c0011t0001 a0002c0005t0001 a0001c0006t0001 a0001c0011t0001 a0002c0005t0001	a0001c0006t0001g0216 a0001c0006t0001g0217 a0001c0011t0001g0014 others(1): Show a0001c0006t0001g0216 a0001c0006t0001g0217 a0001c0011t0001g0014 a0002c0005t0001g0160	4	356	0.0112	20	c.415 others(37): Show c.415+4793_415+4794insATAAATAAATAAATAAATAA	PTPRA	ENSG00000132670.21	transcript	ENST00000399903.7	protein_coding	5/23		INFO_REALIGN_3_PRIME	chr20	TogoVar
PTPRC_chr1_198634040_198762476	198642370	G G	GTCTATCT others(13): Show GTCTATCTATCTATCTATCTA	intron_variant intron_variant	MODIFIER	HG02486.hp1 NA18968.hp2 NA19009.hp1 HG02486.hp1 NA18968.hp2 NA19009.hp1	a0001 a0008 a0001 a0008	a0001c0002 a0008c0009 a0001c0002 a0008c0009	a0001c0002t0003 a0001c0002t0004 a0008c0009t0001 a0001c0002t0003 a0001c0002t0004 a0008c0009t0001	a0001c0002t0003g0288 a0001c0002t0004g0232 a0008c0009t0001g0193 a0001c0002t0003g0288 a0001c0002t0004g0232 a0008c0009t0001g0193	3	296	0.0101	20	c.73+ others(35): Show c.73+3040_73+3059dupTATCTATCTATCTATCTATC	PTPRC	ENSG00000081237.21	transcript	ENST00000442510.8	protein_coding	2/32		INFO_REALIGN_3_PRIME	chr1	TogoVar
PTPRC_chr1_198634040_198762476	198642892	T T	TTTTCTTT others(13): Show TTTTCTTTCTTCCTTCCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02895.hp1 HG04228.hp2 HG01884.hp2 HG02895.hp1 HG04228.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0017 a0001c0001 a0005c0017	a0001c0001t0001 a0001c0001t0002 a0005c0017t0001 a0001c0001t0001 a0001c0001t0002 a0005c0017t0001	a0001c0001t0001g0159 a0001c0001t0002g0259 a0005c0017t0001g0289 a0001c0001t0001g0159 a0001c0001t0002g0259 a0005c0017t0001g0289	3	296	0.0101	20	c.73+ others(35): Show c.73+3561_73+3562insCCTTCCTTTCTTTCTTTCTT	PTPRC	ENSG00000081237.21	transcript	ENST00000442510.8	protein_coding	2/32		INFO_REALIGN_3_PRIME	chr1	TogoVar
PTPRD_chr9_8309246_10618002	8557455	T T	TATATATA others(13): Show TATATATATACATACACATAC	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0012 a0001c0001t0022g0012	1	34	0.0294	20	c.353 others(39): Show c.353-28677_353-28676insGTATGTGTATGTATATATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	14/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8933340	G G	GTTTTTTT others(13): Show GTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0001 a0001c0004t0003g0001	1	34	0.0294	20	c.-10 others(41): Show c.-104+85337_-104+85356dupAAAAAAAAAAAAAAAAAAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	11/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8940280	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0018 a0001c0001t0002g0018	1	34	0.0294	20	c.-10 others(41): Show c.-104+78397_-104+78416dupAAAAAAAAAAAAAAAAAAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	11/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9008205	T T	TTTTATTT others(13): Show TTTTATTTATTTATTTATTTA	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG01981.hp1	a0003 a0003	a0003c0008 a0003c0008	a0003c0008t0008 a0003c0008t0008	a0003c0008t0008g0003 a0003c0008t0008g0003	1	34	0.0294	20	c.-10 others(41): Show c.-104+10472_-104+10491dupTAAATAAATAAATAAATAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	11/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9088581	G G	GAAAAAAA others(13): Show GAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0024	a0001c0001t0024g0032 a0001c0001t0024g0032	1	34	0.0294	20	c.-14 others(41): Show c.-142-69866_-142-69847dupTTTTTTTTTTTTTTTTTTTT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	10/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9195107	T T	TATATATA others(13): Show TATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0007 a0001c0003t0007	a0001c0003t0007g0029 a0001c0003t0007g0029	1	34	0.0294	20	c.-20 others(41): Show c.-202-11745_-202-11744insGTATATATATATATATATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	9/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9333500	T T	TATATTTT others(13): Show TATATTTTATATATATATATA	intron_variant intron_variant	MODIFIER	HG02559.hp1 NA21309.hp1 HG02559.hp1 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0011 a0001c0002 a0001c0011	a0001c0002t0015 a0001c0011t0005 a0001c0002t0015 a0001c0011t0005	a0001c0002t0015g0010 a0001c0011t0005g0021 a0001c0002t0015g0010 a0001c0011t0005g0021	2	34	0.0588	20	c.-20 others(41): Show c.-203+63948_-203+63949insTATATATATATATAAAATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	9/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9403290	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	34	0.0294	20	c.-23 others(39): Show c.-236-5828_-236-5809dupTTTTTTTTTTTTTTTTTTTT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	8/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9467588	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0024 a0001c0002t0003g0024	1	34	0.0294	20	c.-23 others(41): Show c.-236-70126_-236-70107dupTTTTTTTTTTTTTTTTTTTT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	8/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9629238	G G	GTGTATAT others(13): Show GTGTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	34	0.0294	20	c.-28 others(41): Show c.-286-54458_-286-54457insTATATATATATATATATACA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	7/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9998125	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0005 a0005	a0005c0016 a0005c0016	a0005c0016t0020 a0005c0016t0020	a0005c0016t0020g0011 a0005c0016t0020g0011	1	34	0.0294	20	c.-47 others(41): Show c.-472+35592_-472+35593insATATATATATATATATATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	4/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	10060923	T T	TCTTCCTT others(13): Show TCTTCCTTCCTTCCTTCCTTC	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG01981.hp1	a0003 a0003	a0003c0008 a0003c0008	a0003c0008t0008 a0003c0008t0008	a0003c0008t0008g0003 a0003c0008t0008g0003	1	34	0.0294	20	c.-54 others(41): Show c.-544-27134_-544-27133insGAAGGAAGGAAGGAAGGAAG	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	3/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	10065141	T T	TAGAAAGA others(13): Show TAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01109.hp2 HG03225.hp1 others(3): Show HG01099.hp2 HG01109.hp2 HG03225.hp1 HG03225.hp2 HG03834.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0017	a0001c0001t0001 a0001c0001t0002 a0001c0002t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0003 a0001c0003t0004 a0001c0004t0018 a0001c0017t0002	a0001c0001t0001g0006 a0001c0001t0002g0013 a0001c0002t0003g0024 others(3): Show a0001c0001t0001g0006 a0001c0001t0002g0013 a0001c0002t0003g0024 a0001c0003t0004g0027 a0001c0004t0018g0015 a0001c0017t0002g0005	6	34	0.1765	20	c.-54 others(41): Show c.-544-31371_-544-31352dupTTCTTTCTTTCTTTCTTTCT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	3/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	10065180	A A	AAAGAAAG others(13): Show AAAGAAAGAAAGAAAGAAAGG	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0022 a0001c0001t0013g0022	1	34	0.0294	20	c.-54 others(41): Show c.-544-31391_-544-31390insCCTTTCTTTCTTTCTTTCTT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	3/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	10103377	T T	TTATATAT others(13): Show TTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03834.hp2 HG03579.hp1 HG03834.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0009 a0001c0001 a0004c0009	a0001c0001t0022 a0004c0009t0006 a0001c0001t0022 a0004c0009t0006	a0001c0001t0022g0012 a0004c0009t0006g0007 a0001c0001t0022g0012 a0004c0009t0006g0007	2	34	0.0588	20	c.-54 others(41): Show c.-544-69588_-544-69587insTATATATATATATATATATA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	3/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	10151256	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0012 a0001c0001t0022g0012	1	34	0.0294	20	c.-54 others(43): Show c.-544-117486_-544-117467dupAAAAAAAAAAAAAAAAAAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	3/45			chr9	TogoVar

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