Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SNX1_chr15_64090982_64149231	64124178	A A	ATATATAT others(13): Show ATATATATATATATATGTATG	intron_variant intron_variant	MODIFIER	HG03579.hp1 NA19240.hp2 HG03579.hp1 NA19240.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0041 a0001c0004t0042 a0001c0004t0041 a0001c0004t0042	a0001c0004t0041g0204 a0001c0004t0042g0202 a0001c0004t0041g0204 a0001c0004t0042g0202	2	270	0.0074	20	c.510 others(35): Show c.510+633_510+634insATATATATATATATGTATGT	SNX1	ENSG00000028528.15	transcript	ENST00000559844.6	protein_coding	5/14		INFO_REALIGN_3_PRIME	chr15	TogoVar
SNX1_chr15_64090982_64149231	64140983	T T	TGATAGAT others(13): Show TGATAGATAGATAGATAGATA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02257.hp2 HG02293.hp1 HG03098.hp2 others(4): Show HG02257.hp2 HG02293.hp1 HG03098.hp2 HG04199.hp1 NA19011.hp2 NA19030.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0053 a0001c0001t0054 others(1): Show a0001c0001t0018 a0001c0001t0053 a0001c0001t0054 a0001c0001t0074	a0001c0001t0018g0016 a0001c0001t0018g0091 a0001c0001t0018g0116 others(4): Show a0001c0001t0018g0016 a0001c0001t0018g0091 a0001c0001t0018g0116 a0001c0001t0018g0145 a0001c0001t0053g0011 a0001c0001t0054g0146 a0001c0001t0074g0174	7	270	0.0259	20	c.33 others(31): Show c.3389_*3408dupAGATAGATAGATAGATAGAT	SNX1	ENSG00000028528.15	transcript	ENST00000559844.6	protein_coding	15/15	3409	INFO_REALIGN_3_PRIME	chr15	TogoVar
SNX20_chr16_50666629_50686312	50685036	T T	TATCTCAT others(13): Show TATCTCATCTCATCTCATCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00621.hp2 HG01175.hp1 HG02004.hp2 others(19): Show HG00621.hp2 HG01175.hp1 HG02004.hp2 HG02155.hp1 HG02155.hp2 NA18612.hp2 NA18747.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18957.hp2 NA18964.hp2 NA18972.hp1 NA18978.hp1 NA18982.hp1 NA18999.hp1 NA19011.hp1 NA19054.hp2 NA19072.hp2 NA19078.hp2 NA19081.hp2 NA19089.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0029 a0002c0002t0007 a0002c0002t0008 a0002c0002t0012 a0002c0002t0015	a0001c0001t0001g0049 a0001c0001t0002g0167 a0001c0001t0005g0093 others(11): Show a0001c0001t0001g0049 a0001c0001t0002g0167 a0001c0001t0005g0093 a0001c0001t0029g0165 a0002c0002t0007g0015 a0002c0002t0007g0021 a0002c0002t0007g0048 a0002c0002t0008g0014 a0002c0002t0008g0158 a0002c0002t0008g0159 a0002c0002t0012g0154 a0002c0002t0015g0153 a0002c0002t0015g0155 a0002c0002t0015g0169	22	416	0.0529	20	c.-38 others(31): Show c.-3857_-3856insGAGATGAGATGAGATGAGAT	SNX20	ENSG00000167208.16	transcript	ENST00000330943.9	protein_coding		3725		chr16	TogoVar
SNX21_chr20_45828799_45848276	45841392	A A	AGCTGGGA others(13): Show AGCTGGGAGGCTGCAGAGGGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03017.hp2 HG03017.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0029 a0002c0002t0029	a0002c0002t0029g0002 a0002c0002t0029g0002	1	432	0.0023	20	c.88 others(28): Show c.88_*107dupGCTGCAGAGGGTGCTGGGAG	SNX21	ENSG00000124104.19	transcript	ENST00000491381.6	protein_coding	4/4	108	INFO_REALIGN_3_PRIME	chr20	TogoVar
SNX25_chr4_185204598_185368966	185212491	G G	GTGTGTGT others(13): Show GTGTGTGTGTGTTTTTGTTTT	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG02738.hp2 NA18973.hp1 HG00621.hp2 HG02738.hp2 NA18973.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011	3	276	0.0109	20	c.429 others(37): Show c.429+2237_429+2238insGTGTGTGTGTTTTTGTTTTT	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185224510	G G	GATATATA others(13): Show GATATATAAATATATATACAT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0046 a0001c0001t0001g0046	1	276	0.0036	20	c.429 others(39): Show c.429+14293_429+14312dupCATATATATAAATATATATA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185300840	G G	GACACACA others(13): Show GACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19054.hp2 NA19030.hp1 NA19054.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0023 a0001c0001t0001g0141 a0001c0001t0001g0023 a0001c0001t0001g0141	2	276	0.0073	20	c.116 others(39): Show c.1163-9779_1163-9760dupCACACACACACACACACACA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	6/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185329431	G G	GACCCAGC others(13): Show GACCCAGCGTCCTCTTTCCTA	intron_variant intron_variant	MODIFIER	NA18612.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0175 a0001c0001t0001g0175	1	276	0.0036	20	c.175 others(39): Show c.1750-3162_1750-3143dupCCCAGCGTCCTCTTTCCTAA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	9/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX25_chr4_185204598_185368966	185360950	T T	TATATATA others(13): Show TATATATATATATATAGATAG	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG02280.hp2 HG02630.hp1 others(12): Show HG00544.hp2 HG02280.hp2 HG02630.hp1 HG02809.hp2 HG02896.hp2 HG02897.hp2 HG03669.hp1 NA18954.hp1 NA18955.hp1 NA18985.hp1 NA19009.hp2 NA19054.hp1 NA19056.hp1 NA19062.hp2 NA19065.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0001 a0001c0003t0001 a0002c0002t0001 a0001c0001t0001 a0001c0003t0001 a0002c0002t0001	a0001c0001t0001g0213 a0001c0001t0001g0238 a0001c0003t0001g0067 others(12): Show a0001c0001t0001g0213 a0001c0001t0001g0238 a0001c0003t0001g0067 a0001c0003t0001g0070 a0001c0003t0001g0073 a0001c0003t0001g0074 a0001c0003t0001g0085 a0001c0003t0001g0097 a0001c0003t0001g0136 a0001c0003t0001g0137 a0001c0003t0001g0160 a0001c0003t0001g0184 a0002c0002t0001g0262 a0002c0002t0001g0268 a0002c0002t0001g0269	15	276	0.0544	20	c.265 others(37): Show c.2652-971_2652-970insTATATATATATAGATAGATA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	16/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX27_chr1_151607050_151704080	151641598	G G	GATATATA others(13): Show GATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG02056.hp1 HG02602.hp1 others(10): Show HG00408.hp2 HG02056.hp1 HG02602.hp1 HG02622.hp2 HG03710.hp2 HG03927.hp2 HG06807.hp1 NA18612.hp1 NA18943.hp2 NA18982.hp1 NA18999.hp2 NA19001.hp1 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0017 a0001c0001t0018 others(9): Show a0001c0001t0008 a0001c0001t0017 a0001c0001t0018 a0001c0001t0037 a0001c0001t0057 a0001c0001t0062 a0001c0001t0105 a0001c0001t0114 a0001c0001t0115 a0001c0001t0129 a0001c0001t0146 a0001c0001t0173	a0001c0001t0008g0044 a0001c0001t0008g0071 a0001c0001t0017g0322 others(10): Show a0001c0001t0008g0044 a0001c0001t0008g0071 a0001c0001t0017g0322 a0001c0001t0018g0292 a0001c0001t0037g0045 a0001c0001t0057g0294 a0001c0001t0062g0028 a0001c0001t0105g0082 a0001c0001t0114g0310 a0001c0001t0115g0290 a0001c0001t0129g0083 a0001c0001t0146g0078 a0001c0001t0173g0046	13	366	0.0355	20	c.543 others(37): Show c.543+2492_543+2511dupATATATATATATATATATAT	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151681235	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18954.hp1 NA18954.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0197 a0002c0002t0006g0197	1	366	0.0027	20	c.115 others(39): Show c.1150-2116_1150-2097dupTTTTTTTTTTTTTTTTTTTT	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151696461	T T	TTTTCTTT others(13): Show TTTTCTTTCTTTCTTTCTTTC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19012.hp1 NA19012.hp2 NA19012.hp1 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0044 a0001c0001t0044	a0001c0001t0044g0160 a0001c0001t0044g0302 a0001c0001t0044g0160 a0001c0001t0044g0302	2	366	0.0055	20	c.20 others(31): Show c.2069_*2088dupTTTCTTTCTTTCTTTCTTTC	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	12/12	2089	INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151696498	T T	TTTCGTTC others(13): Show TTTCGTTCTTTCGTTCTTTCG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0101 a0001c0001t0101	a0001c0001t0101g0203 a0001c0001t0101g0203	1	366	0.0027	20	c.20 others(31): Show c.2084_*2085insGTTCTTTCGTTCTTTCGTTC	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	12/12	2085	INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151696498	T T	TTTCTTTC others(13): Show TTTCTTTCTTTCGTTCTTTCG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01346.hp2 HG03098.hp2 HG03453.hp2 others(7): Show HG01346.hp2 HG03098.hp2 HG03453.hp2 HG06807.hp1 NA18940.hp1 NA18967.hp2 NA18992.hp1 NA18999.hp1 NA19005.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0040 a0001c0001t0059 others(3): Show a0001c0001t0030 a0001c0001t0040 a0001c0001t0059 a0001c0001t0095 a0001c0001t0129 a0001c0001t0140	a0001c0001t0030g0198 a0001c0001t0030g0210 a0001c0001t0030g0258 others(7): Show a0001c0001t0030g0198 a0001c0001t0030g0210 a0001c0001t0030g0258 a0001c0001t0040g0249 a0001c0001t0040g0252 a0001c0001t0059g0206 a0001c0001t0059g0251 a0001c0001t0095g0334 a0001c0001t0129g0083 a0001c0001t0140g0093	10	366	0.0273	20	c.20 others(31): Show c.2088_*2089insTTTCGTTCTTTCGTTCTTTC	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	12/12	2089	INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151696498	T T	TTTCTTTC others(13): Show TTTCTTTCTTTCTTTCTTTCG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0112 a0001c0001t0112	a0001c0001t0112g0208 a0001c0001t0112g0208	1	366	0.0027	20	c.20 others(31): Show c.2088_*2089insTTTCTTTCTTTCGTTCTTTC	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	12/12	2089	INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX29_chr16_11971734_12579287	12013492	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0032	a0001c0001t0032g0130 a0001c0001t0032g0130	1	176	0.0057	20	c.122 others(39): Show c.122+10450_122+10451insTATATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013498	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0118 a0001c0001t0014g0118	1	176	0.0057	20	c.122 others(39): Show c.122+10456_122+10457insTATATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013500	A A	AAAAAAAA others(13): Show AAAAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0104 a0001c0001t0008g0104	1	176	0.0057	20	c.122 others(39): Show c.122+10458_122+10459insAAAAAAAAAATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013500	A A	AAAAAAAA others(13): Show AAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02897.hp2 HG02895.hp1 HG02897.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0044 a0002c0005t0051 a0002c0005t0044 a0002c0005t0051	a0002c0005t0044g0071 a0002c0005t0051g0091 a0002c0005t0044g0071 a0002c0005t0051g0091	2	176	0.0114	20	c.122 others(39): Show c.122+10458_122+10459insAAAAAATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013500	A A	AAAAAATA others(13): Show AAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03710.hp2 HG03834.hp1 HG03710.hp2 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0059 a0001c0003t0053 a0001c0001t0059 a0001c0003t0053	a0001c0001t0059g0040 a0001c0003t0053g0131 a0001c0001t0059g0040 a0001c0003t0053g0131	2	176	0.0114	20	c.122 others(39): Show c.122+10458_122+10459insAAAATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013500	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0005 a0005	a0005c0019 a0005c0019	a0005c0019t0019 a0005c0019t0019	a0005c0019t0019g0067 a0005c0019t0019g0067	1	176	0.0057	20	c.122 others(39): Show c.122+10480_122+10499dupATATATATATATATATATAT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12063366	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0005 a0005	a0005c0019 a0005c0019	a0005c0019t0019 a0005c0019t0019	a0005c0019t0019g0067 a0005c0019t0019g0067	1	176	0.0057	20	c.124 others(39): Show c.1243+1727_1243+1746dupTTTTTTTTTTTTTTTTTTTT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	9/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12364161	T T	TTGTTATG others(13): Show TTGTTATGTTATGTTATGTTA	intron_variant intron_variant	MODIFIER	HG01981.hp1 NA19060.hp2 HG01981.hp1 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0046 a0001c0001t0047 a0001c0001t0046 a0001c0001t0047	a0001c0001t0046g0047 a0001c0001t0047g0155 a0001c0001t0046g0047 a0001c0001t0047g0155	2	176	0.0114	20	c.189 others(39): Show c.1899+7919_1899+7938dupGTTATGTTATGTTATGTTAT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	16/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12380462	A A	ACCCACCA others(13): Show ACCCACCATCCACCCACCCAC	intron_variant intron_variant	MODIFIER	HG02523.hp1 HG02523.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0104 a0001c0003t0104	a0001c0003t0104g0156 a0001c0003t0104g0156	1	176	0.0057	20	c.190 others(41): Show c.1900-17973_1900-17972insCCCACCCACCCCACCATCCA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	16/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12380705	A A	AACCATCA others(13): Show AACCATCAATTCCATCCACCC	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00323.hp1 others(55): Show HG00140.hp2 HG00280.hp1 HG00323.hp1 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00738.hp2 HG01081.hp1 HG01081.hp2 HG01109.hp1 HG01109.hp2 HG01175.hp1 HG01257.hp1 HG01261.hp1 HG01261.hp2 HG01358.hp1 HG01358.hp2 HG01433.hp1 HG01981.hp1 HG01993.hp2 HG02015.hp1 HG02040.hp2 HG02257.hp2 HG02451.hp2 HG02523.hp1 HG02559.hp1 HG02886.hp2 HG03471.hp2 HG03486.hp2 HG03490.hp2 HG03579.hp1 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 NA18522.hp1 NA18969.hp1 NA18969.hp2 NA18979.hp2 NA18983.hp2 NA18986.hp1 NA18986.hp2 NA18990.hp1 NA18990.hp2 NA19009.hp2 NA19043.hp1 NA19043.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp1 NA19070.hp2 NA19085.hp1 NA19090.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20805.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(10): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0012 a0001c0013 a0001c0014 a0001c0015 a0001c0022 a0001c0023 a0001c0025 a0002c0005 a0004c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(45): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0031 a0001c0001t0032 a0001c0001t0034 a0001c0001t0041 a0001c0001t0046 a0001c0001t0047 a0001c0001t0052 a0001c0001t0059 a0001c0001t0102 a0001c0001t0110 a0001c0002t0003 a0001c0002t0005 a0001c0002t0024 a0001c0002t0065 a0001c0002t0069 a0001c0002t0073 a0001c0002t0075 a0001c0002t0076 a0001c0002t0090 a0001c0002t0109 a0001c0003t0001 a0001c0003t0004 a0001c0003t0006 a0001c0003t0057 a0001c0003t0060 a0001c0003t0103 a0001c0003t0104 a0001c0004t0003 a0001c0004t0021 a0001c0004t0071 a0001c0004t0080 a0001c0004t0084 a0001c0004t0105 a0001c0012t0002 a0001c0013t0094 a0001c0014t0015 a0001c0015t0003 a0001c0022t0049 a0001c0023t0008 a0001c0025t0096 a0002c0005t0039 a0004c0011t0009	a0001c0001t0001g0112 a0001c0001t0001g0163 a0001c0001t0002g0020 others(55): Show a0001c0001t0001g0112 a0001c0001t0001g0163 a0001c0001t0002g0020 a0001c0001t0002g0169 a0001c0001t0004g0078 a0001c0001t0014g0099 a0001c0001t0015g0085 a0001c0001t0017g0025 a0001c0001t0031g0143 a0001c0001t0032g0130 a0001c0001t0034g0063 a0001c0001t0041g0046 a0001c0001t0046g0047 a0001c0001t0047g0155 a0001c0001t0052g0026 a0001c0001t0059g0040 a0001c0001t0102g0001 a0001c0001t0110g0162 a0001c0002t0003g0051 a0001c0002t0003g0134 a0001c0002t0003g0152 a0001c0002t0003g0160 a0001c0002t0005g0002 a0001c0002t0005g0032 a0001c0002t0005g0084 a0001c0002t0005g0168 a0001c0002t0024g0050 a0001c0002t0065g0136 a0001c0002t0069g0017 a0001c0002t0073g0096 a0001c0002t0075g0129 a0001c0002t0076g0100 a0001c0002t0090g0170 a0001c0002t0109g0036 a0001c0003t0001g0103 a0001c0003t0001g0154 a0001c0003t0004g0176 a0001c0003t0006g0144 a0001c0003t0057g0105 a0001c0003t0060g0093 a0001c0003t0103g0079 a0001c0003t0104g0156 a0001c0004t0003g0138 a0001c0004t0003g0161 a0001c0004t0021g0080 a0001c0004t0071g0109 a0001c0004t0080g0054 a0001c0004t0084g0135 a0001c0004t0105g0042 a0001c0012t0002g0028 a0001c0013t0094g0126 a0001c0014t0015g0165 a0001c0015t0003g0166 a0001c0022t0049g0061 a0001c0023t0008g0110 a0001c0025t0096g0076 a0002c0005t0039g0013 a0004c0011t0009g0116	58	176	0.3296	20	c.190 others(41): Show c.1900-17740_1900-17721dupACCATCAATTCCATCCACCC	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	16/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12461978	A A	AAAATATA others(13): Show AAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0063 a0001c0001t0063	a0001c0001t0063g0039 a0001c0001t0063g0039	1	176	0.0057	20	c.203 others(41): Show c.2038-15740_2038-15739insAATATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12464229	C C	CGTGTGTG others(13): Show CGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02615.hp2 HG03704.hp2 others(1): Show HG02015.hp1 HG02615.hp2 HG03704.hp2 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0015 a0001c0001 a0001c0003 a0001c0015	a0001c0001t0001 a0001c0001t0110 a0001c0003t0016 others(1): Show a0001c0001t0001 a0001c0001t0110 a0001c0003t0016 a0001c0015t0003	a0001c0001t0001g0163 a0001c0001t0110g0162 a0001c0003t0016g0029 others(1): Show a0001c0001t0001g0163 a0001c0001t0110g0162 a0001c0003t0016g0029 a0001c0015t0003g0166	4	176	0.0227	20	c.203 others(41): Show c.2038-13474_2038-13473insGTGTGTGTGTGTGTGTGTGT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12483114	G G	GTTTTTTT others(13): Show GTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG03486.hp1 HG01358.hp1 HG03486.hp1	a0001 a0004 a0001 a0004	a0001c0002 a0004c0011 a0001c0002 a0004c0011	a0001c0002t0086 a0004c0011t0009 a0001c0002t0086 a0004c0011t0009	a0001c0002t0086g0066 a0004c0011t0009g0116 a0001c0002t0086g0066 a0004c0011t0009g0116	2	176	0.0114	20	c.217 others(39): Show c.2178+5265_2178+5284dupTTTTTTTTTTTTTTTTTTTT	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	19/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12512367	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01074.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0083 a0001c0004t0083	a0001c0004t0083g0068 a0001c0004t0083g0068	1	176	0.0057	20	c.217 others(41): Show c.2179-12334_2179-12333insTATATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	19/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12512369	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0119 a0001c0003t0002g0119	1	176	0.0057	20	c.217 others(41): Show c.2179-12303_2179-12284dupTATATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	19/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX2_chr5_122770080_122839543	122801652	C C	CGTGTGTG others(13): Show CGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0166 a0001c0001t0011g0166	1	372	0.0027	20	c.391 others(35): Show c.391-198_391-179dupGTGTGTGTGTGTGTGTGTGT	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	3/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX2_chr5_122770080_122839543	122806142	G G	GCGCGCAC others(13): Show GCGCGCACGCGCACACACACA	intron_variant intron_variant	MODIFIER	HG03453.hp1 NA19043.hp1 HG03453.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0008 a0001c0001t0011g0008	2	372	0.0054	20	c.644 others(37): Show c.644-2134_644-2133insGCGCACGCGCACACACACAC	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX30_chr9_112745760_112879987	112775542	T T	TTGTGTGT others(13): Show TTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG04184.hp2 HG02109.hp1 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0012 a0001c0001t0002 a0001c0001t0012	a0001c0001t0002g0125 a0001c0001t0012g0323 a0001c0001t0002g0125 a0001c0001t0012g0323	2	338	0.0059	20	c.156 others(39): Show c.156+24411_156+24430dupGTGTGTGTGTGTGTGTGTGT	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX30_chr9_112745760_112879987	112795765	T T	TCTCACAC others(13): Show TCTCACACACACACACACACA	intron_variant intron_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0251 a0001c0001t0003g0251	1	338	0.0030	20	c.157 others(37): Show c.157-9010_157-9009insTCACACACACACACACACAC	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX30_chr9_112745760_112879987	112834882	A A	ACACACAC others(13): Show ACACACACACACACACACACC	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0073 a0001c0001t0002g0073	1	338	0.0030	20	c.619 others(37): Show c.619-1331_619-1330insACACACACACACACACACCC	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX30_chr9_112745760_112879987	112865624	C C	CATATATA others(13): Show CATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19057.hp1 NA19057.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0052 a0001c0002t0052	a0001c0002t0052g0204 a0001c0002t0052g0204	1	338	0.0030	20	c.125 others(39): Show c.1254+1244_1254+1263dupATATATATATATATATATAT	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX30_chr9_112745760_112879987	112865661	A A	ATATATAT others(13): Show ATATATATATATATATGTGTG	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0332 a0001c0002t0007g0332	1	338	0.0030	20	c.125 others(39): Show c.1254+1263_1254+1264insATATATATATATATGTGTGT	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX31_chr8_100567889_100654665	100635222	T T	TTTTATTT others(13): Show TTTTATTTATTTATTTATTTA	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01099.hp2 HG01168.hp2 others(4): Show HG00741.hp2 HG01099.hp2 HG01168.hp2 HG01169.hp2 HG02040.hp2 HG02109.hp2 NA18960.hp2	a0003 a0005 a0007 a0003 a0005 a0007	a0003c0003 a0005c0005 a0007c0007 a0003c0003 a0005c0005 a0007c0007	a0003c0003t0002 a0003c0003t0005 a0005c0005t0002 others(2): Show a0003c0003t0002 a0003c0003t0005 a0005c0005t0002 a0007c0007t0004 a0007c0007t0006	a0003c0003t0002g0042 a0003c0003t0005g0046 a0003c0003t0005g0047 others(4): Show a0003c0003t0002g0042 a0003c0003t0005g0046 a0003c0003t0005g0047 a0003c0003t0005g0050 a0005c0005t0002g0049 a0007c0007t0004g0120 a0007c0007t0006g0119	7	304	0.0230	20	c.256 others(35): Show c.256+655_256+674dupTAAATAAATAAATAAATAAA	SNX31	ENSG00000174226.9	transcript	ENST00000311812.7	protein_coding	3/13			chr8	TogoVar
SNX32_chr11_65828963_65858701	65839223	G G	GTTTTTTT others(13): Show GTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01517.hp2 HG02300.hp2 HG03654.hp2 others(2): Show HG01517.hp2 HG02300.hp2 HG03654.hp2 NA18966.hp1 NA19005.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0088 others(2): Show a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0105	5	390	0.0128	20	c.36+ others(35): Show c.36+5123_36+5124insTTTTTTTTTTTTTTTTTTTT	SNX32	ENSG00000172803.18	transcript	ENST00000308342.7	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr11	TogoVar
SNX3_chr6_108206222_108266040	108234238	C C	CATATATA others(13): Show CATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03579.hp2 NA20300.hp2 HG03579.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0225 a0001c0001t0002g0289 a0001c0001t0001g0225 a0001c0001t0002g0289	2	356	0.0056	20	c.163 others(39): Show c.163-11194_163-11193insATATATATATATATATATAT	SNX3	ENSG00000112335.15	transcript	ENST00000230085.13	protein_coding	1/3			chr6	TogoVar
SNX4_chr3_125441650_125525202	125471344	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01993.hp1 HG01993.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0269 a0001c0001t0002g0269	1	360	0.0028	20	c.789 others(37): Show c.789-1845_789-1826dupTTTTTTTTTTTTTTTTTTTT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	8/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495250	T T	TTATATAT others(13): Show TTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03927.hp2 NA18963.hp2 NA18982.hp1 others(1): Show HG03927.hp2 NA18963.hp2 NA18982.hp1 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0001 a0001c0001t0001 a0001c0004t0001	a0001c0001t0001g0040 a0001c0001t0001g0083 a0001c0001t0001g0121 others(1): Show a0001c0001t0001g0040 a0001c0001t0001g0083 a0001c0001t0001g0121 a0001c0004t0001g0161	4	360	0.0111	20	c.597 others(37): Show c.597+2071_597+2090dupTATATATATATATATATATA	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495275	T T	TATATATA others(13): Show TATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG02165.hp2 HG02293.hp2 others(8): Show HG01433.hp2 HG02165.hp2 HG02293.hp2 HG02698.hp2 HG02738.hp2 HG03927.hp1 NA18949.hp1 NA18957.hp2 NA18982.hp2 NA19060.hp2 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0334 a0001c0001t0001g0337 a0001c0001t0001g0338 others(8): Show a0001c0001t0001g0334 a0001c0001t0001g0337 a0001c0001t0001g0338 a0001c0001t0001g0341 a0001c0001t0001g0342 a0001c0001t0001g0343 a0001c0001t0001g0350 a0001c0001t0001g0351 a0001c0001t0001g0353 a0001c0001t0001g0354 a0001c0001t0001g0357	11	360	0.0306	20	c.597 others(37): Show c.597+2065_597+2066insGTGTGTGTATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495275	T T	TATATATA others(13): Show TATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0308 a0001c0001t0001g0308	1	360	0.0028	20	c.597 others(37): Show c.597+2065_597+2066insGTGTATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495275	T T	TATATATA others(13): Show TATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0152 a0001c0001t0002g0152	1	360	0.0028	20	c.597 others(37): Show c.597+2065_597+2066insGTATATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495277	T T	TATATATA others(13): Show TATATATATATATACATACAC	intron_variant intron_variant	MODIFIER	HG06807.hp2 NA19003.hp1 HG06807.hp2 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0266 a0001c0001t0002g0284 a0001c0001t0002g0266 a0001c0001t0002g0284	2	360	0.0056	20	c.597 others(37): Show c.597+2063_597+2064insGTGTATGTATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495277	T T	TATATATA others(13): Show TATATATATATATATACACAC	intron_variant intron_variant	MODIFIER	HG01175.hp2 NA19087.hp1 HG01175.hp2 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0243 a0001c0001t0002g0173 a0001c0001t0001g0243 a0001c0001t0002g0173	2	360	0.0056	20	c.597 others(37): Show c.597+2063_597+2064insGTGTGTATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495277	T T	TATATATA others(13): Show TATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02698.hp1 HG02896.hp1 HG03491.hp2 others(3): Show HG02698.hp1 HG02896.hp1 HG03491.hp2 HG04199.hp2 NA19003.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0123 a0001c0001t0001g0255 a0001c0001t0002g0142 others(3): Show a0001c0001t0001g0123 a0001c0001t0001g0255 a0001c0001t0002g0142 a0001c0001t0002g0172 a0001c0001t0002g0177 a0001c0001t0002g0202	6	360	0.0167	20	c.597 others(37): Show c.597+2063_597+2064insGTGTATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495277	T T	TATATATA others(13): Show TATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0188 a0001c0001t0002g0188	1	360	0.0028	20	c.597 others(37): Show c.597+2063_597+2064insGTATATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125519948	G G	GGCCCGGC others(13): Show GGCCCGGCCCAGCCCAGCCCA	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG03098.hp1 HG03516.hp2 HG02818.hp2 HG03098.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0331 a0001c0001t0001g0332 a0001c0001t0001g0333 a0001c0001t0001g0331 a0001c0001t0001g0332 a0001c0001t0001g0333	3	360	0.0083	20	c.141 others(33): Show c.141+83_141+84insTGGGCTGGGCTGGGCCGGGC	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	1/13			chr3	TogoVar

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