Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TOR1A_chr9_129807942_129829136	129824606	A A	AAATAATA others(14): Show AAATAATAATAATAATAATAAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18971.hp1 NA18971.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0022 a0001c0002t0002g0022	1	236	0.0042	21	c.-52 others(30): Show c.-522_-521insATTATTATTATTATTATTATT	TOR1A	ENSG00000136827.12	transcript	ENST00000351698.5	protein_coding		471		chr9	TogoVar
TOR2A_chr9_127726524_127740294	127733181	G G	GAGCCCAG others(14): Show GAGCCCAGAATTTGCTGAGAAT	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0031	1	360	0.0028	21	c.593 others(36): Show c.593+183_593+203dupATTCTCAGCAAATTCTGGGCT	TOR2A	ENSG00000160404.18	transcript	ENST00000373284.10	protein_coding	3/4			chr9	TogoVar
TOR3A_chr1_179077070_179100996	179083594	G G	GGGGGGGG others(14): Show GGGGGGGGGGGGGGGGGGGGGA	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0147 a0001c0001t0001g0147	1	398	0.0025	21	c.373 others(36): Show c.373+546_373+547insGGGGGGGGGGGGGGGAGGGGG	TOR3A	ENSG00000186283.14	transcript	ENST00000367627.8	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
TOX2_chr20_43909852_44074616	43927625	C C	CTTCCTTC others(14): Show CTTCCTTCCCTTCCCTTCCCCT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0278 a0001c0001t0001g0278	1	75	0.0133	21	c.99+ others(38): Show c.99+12636_99+12637insTCCTTCCCTTCCCTTCCCCTT	TOX2	ENSG00000124191.18	transcript	ENST00000341197.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr20	TogoVar
TOX2_chr20_43909852_44074616	43951707	G G	GGTTTTTT others(14): Show GGTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00408.hp1 NA18970.hp2 NA19077.hp2 HG00408.hp1 NA18970.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0125 a0001c0001t0001g0202 a0001c0001t0001g0062 a0001c0001t0001g0125 a0001c0001t0001g0202	3	44	0.0682	21	c.100 others(40): Show c.100-21660_100-21659insGTTTTTTTTTTTTTTTTTTTT	TOX2	ENSG00000124191.18	transcript	ENST00000341197.9	protein_coding	1/8			chr20	TogoVar
TOX2_chr20_43909852_44074616	43951707	G G	GTTGTTTT others(14): Show GTTGTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19010.hp1 NA19010.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0188 a0001c0001t0001g0188	1	42	0.0238	21	c.100 others(40): Show c.100-21658_100-21657insGTTTTTTTTTTTTTTTTTTTT	TOX2	ENSG00000124191.18	transcript	ENST00000341197.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr20	TogoVar
TOX2_chr20_43909852_44074616	43951707	G G	GTTTTTTT others(14): Show GTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02523.hp2 HG03017.hp1 others(5): Show HG01255.hp1 HG02523.hp2 HG03017.hp1 HG03654.hp1 HG03669.hp2 HG03704.hp2 HG04204.hp2 NA18983.hp2	a0001 a0008 a0001 a0008	a0001c0001 a0008c0010 a0001c0001 a0008c0010	a0001c0001t0001 a0008c0010t0001 a0001c0001t0001 a0008c0010t0001	a0001c0001t0001g0058 a0001c0001t0001g0097 a0001c0001t0001g0137 others(5): Show a0001c0001t0001g0058 a0001c0001t0001g0097 a0001c0001t0001g0137 a0001c0001t0001g0190 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0222 a0008c0010t0001g0164	8	49	0.1633	21	c.100 others(40): Show c.100-21659_100-21639dupTTTTTTTTTTTTTTTTTTTTT	TOX2	ENSG00000124191.18	transcript	ENST00000341197.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr20	TogoVar
TOX3_chr16_52431417_52552143	52549543	G G	GTTTTTTT others(14): Show GTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18946.hp1 NA18966.hp2 NA18990.hp1 others(4): Show NA18946.hp1 NA18966.hp2 NA18990.hp1 NA19000.hp2 NA19001.hp1 NA19054.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0048 a0001c0002t0002 others(2): Show a0001c0001t0001 a0001c0001t0048 a0001c0002t0002 a0001c0002t0012 a0001c0003t0025	a0001c0001t0001g0148 a0001c0001t0001g0158 a0001c0001t0001g0165 others(4): Show a0001c0001t0001g0148 a0001c0001t0001g0158 a0001c0001t0001g0165 a0001c0001t0048g0150 a0001c0002t0002g0160 a0001c0002t0012g0164 a0001c0003t0025g0147	7	24	0.2917	21	c.-28 others(32): Show c.-2821_-2820insAAAAAAAAAAAAAAAAAAAAA	TOX3	ENSG00000103460.17	transcript	ENST00000219746.14	protein_coding		2401		chr16	TogoVar
TOX_chr8_58800412_59124147	58838699	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02809.hp2 NA20300.hp2 HG02809.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0175 a0001c0001t0001g0014 a0001c0001t0001g0175	2	24	0.0833	21	c.694 others(36): Show c.694-409_694-389dupAAAAAAAAAAAAAAAAAAAAA	TOX	ENSG00000198846.6	transcript	ENST00000361421.2	protein_coding	4/8			chr8	TogoVar
TOX_chr8_58800412_59124147	58998531	A A	ATAAACTT others(14): Show ATAAACTTATATATAATAAATT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0141 a0001c0001t0002g0141	1	212	0.0047	21	c.103 others(40): Show c.103-38524_103-38523insAATTTATTATATATAAGTTTA	TOX	ENSG00000198846.6	transcript	ENST00000361421.2	protein_coding	1/8			chr8	TogoVar
TP53INP1_chr8_94920972_94954378	94946696	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00621.hp2 HG01081.hp1 others(28): Show HG00544.hp2 HG00621.hp2 HG01081.hp1 HG01981.hp2 HG02056.hp1 HG02129.hp1 HG02293.hp2 HG02523.hp1 HG02818.hp1 HG02896.hp1 HG02897.hp1 HG03239.hp2 HG03491.hp1 HG03491.hp2 NA18522.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18945.hp2 NA18947.hp2 NA18953.hp2 NA18962.hp2 NA18971.hp1 NA18975.hp1 NA18989.hp1 NA19056.hp2 NA19058.hp2 NA19062.hp1 NA19070.hp2 NA19090.hp2 NA20905.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0001t0023 a0001c0002t0009 others(1): Show a0001c0001t0001 a0001c0001t0023 a0001c0002t0009 a0002c0003t0001	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0017 others(18): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0149 a0001c0001t0001g0220 a0001c0001t0023g0088 a0001c0002t0009g0038 a0002c0003t0001g0086	31	92	0.3370	21	c.-15 others(40): Show c.-151+2437_-151+2457dupTTTTTTTTTTTTTTTTTTTTT	TP53INP1	ENSG00000164938.14	transcript	ENST00000342697.5	protein_coding	1/3			chr8	TogoVar
TP63_chr3_189626389_189902276	189765433	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01070.hp1 HG01169.hp1 others(11): Show HG00642.hp1 HG01070.hp1 HG01169.hp1 HG01256.hp2 HG01257.hp1 HG01891.hp2 HG02735.hp1 HG03098.hp1 HG04228.hp1 NA18952.hp2 NA18959.hp2 NA18961.hp1 NA19084.hp2 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0015	a0001c0001t0001g0017 a0001c0001t0001g0143 a0001c0001t0001g0148 others(11): Show a0001c0001t0001g0017 a0001c0001t0001g0143 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0002g0269 a0001c0001t0003g0276 a0001c0001t0004g0004 a0001c0001t0004g0090 a0001c0001t0004g0198 a0001c0001t0006g0252 a0001c0001t0007g0231 a0001c0001t0009g0280 a0001c0001t0015g0138 a0001c0001t0015g0191	14	27	0.5185	21	c.324 others(40): Show c.324+26660_324+26680dupTTTTTTTTTTTTTTTTTTTTT	TP63	ENSG00000073282.14	transcript	ENST00000264731.8	protein_coding	3/13		INFO_REALIGN_3_PRIME	chr3	TogoVar
TP63_chr3_189626389_189902276	189771327	T T	TATATAAT others(14): Show TATATAATATATTATATATTTA	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01081.hp2 HG02109.hp2 others(6): Show HG01074.hp1 HG01081.hp2 HG02109.hp2 HG02280.hp1 HG02451.hp1 HG02630.hp2 HG02647.hp1 HG03471.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(4): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0010 a0001c0001t0012 a0001c0001t0019 a0001c0001t0031	a0001c0001t0002g0228 a0001c0001t0002g0305 a0001c0001t0003g0286 others(6): Show a0001c0001t0002g0228 a0001c0001t0002g0305 a0001c0001t0003g0286 a0001c0001t0004g0240 a0001c0001t0010g0081 a0001c0001t0012g0301 a0001c0001t0012g0302 a0001c0001t0019g0304 a0001c0001t0031g0062	9	309	0.0291	21	c.324 others(40): Show c.324+32564_324+32565insTATATATTTAATATAATATAT	TP63	ENSG00000073282.14	transcript	ENST00000264731.8	protein_coding	3/13		INFO_REALIGN_3_PRIME	chr3	TogoVar
TP63_chr3_189626389_189902276	189848239	T T	TCTCTCTC others(14): Show TCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0204 a0001c0001t0001g0204	1	123	0.0081	21	c.580 others(40): Show c.580-15993_580-15992insCTCTCTCTCTCTCTCTCTCTC	TP63	ENSG00000073282.14	transcript	ENST00000264731.8	protein_coding	4/13			chr3	TogoVar
TP63_chr3_189784659_189902276	189848239	T T	TCTCTCTC others(14): Show TCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG01168.hp1 NA18965.hp2 HG01168.hp1 NA18965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0058 a0001c0001t0002g0375 a0001c0001t0001g0058 a0001c0001t0002g0375	2	158	0.0127	21	c.298 others(40): Show c.298-15993_298-15992insCTCTCTCTCTCTCTCTCTCTC	TP63	ENSG00000073282.14	transcript	ENST00000354600.10	protein_coding	2/11			chr3	TogoVar
TPCN1_chr12_113216464_113303585	113279391	A A	ATATATAT others(14): Show ATATATATATATATTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19089.hp1 NA19089.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0024	a0001c0001t0024g0042 a0001c0001t0024g0042	1	46	0.0217	21	c.129 others(38): Show c.1297+557_1297+558insATATATATATATTTTTTTTTT	TPCN1	ENSG00000186815.13	transcript	ENST00000335509.11	protein_coding	14/27		INFO_REALIGN_3_PRIME	chr12	TogoVar
TPH2_chr12_71933845_72037440	71982015	A A	ATTTTTTT others(14): Show ATTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG02896.hp1 HG06807.hp2 others(13): Show HG01975.hp1 HG02896.hp1 HG06807.hp2 NA18747.hp2 NA18906.hp1 NA18970.hp2 NA18971.hp1 NA18973.hp1 NA18991.hp1 NA18991.hp2 NA19010.hp2 NA19066.hp2 NA19068.hp1 NA19070.hp1 NA19082.hp1 NA19085.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0003t0001 a0001c0003t0002 a0001c0002t0001 a0001c0003t0001 a0001c0003t0002	a0001c0002t0001g0076 a0001c0002t0001g0116 a0001c0002t0001g0138 others(13): Show a0001c0002t0001g0076 a0001c0002t0001g0116 a0001c0002t0001g0138 a0001c0002t0001g0139 a0001c0002t0001g0148 a0001c0002t0001g0149 a0001c0002t0001g0151 a0001c0002t0001g0173 a0001c0002t0001g0174 a0001c0002t0001g0175 a0001c0002t0001g0177 a0001c0002t0001g0183 a0001c0002t0001g0245 a0001c0003t0001g0064 a0001c0003t0001g0150 a0001c0003t0002g0117	16	191	0.0838	21	c.941 others(38): Show c.941+2945_941+2946insTTTTTTTTTTTTTTTTTTTTT	TPH2	ENSG00000139287.13	transcript	ENST00000333850.4	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
TPK1_chr7_144446941_144841053	144805105	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0032 a0001c0001t0001g0032	1	19	0.0526	21	c.43+ others(38): Show c.43+30434_43+30454dupTTTTTTTTTTTTTTTTTTTTT	TPK1	ENSG00000196511.15	transcript	ENST00000360057.7	protein_coding	2/8			chr7	TogoVar
TPO_chr2_1408463_1548673	1415374	T T	TGGGCCTC others(14): Show TGGGCCTCTGGACACAGTCTCG	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0020 a0020	a0020c0024 a0020c0024	a0020c0024t0005 a0020c0024t0005	a0020c0024t0005g0009 a0020c0024t0005g0009	1	128	0.0078	21	c.94+ others(34): Show c.94+878_94+898dupTCTGGACACAGTCTCGGGGCC	TPO	ENSG00000115705.22	transcript	ENST00000329066.9	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
TPP2_chr13_102591986_102684958	102637541	C C	CTTGTTGT others(14): Show CTTGTTGTTGTTGTTGTTGTTG	intron_variant intron_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0244 a0001c0001t0006g0244	1	183	0.0055	21	c.183 others(38): Show c.1836+305_1836+325dupGTTGTTGTTGTTGTTGTTGTT	TPP2	ENSG00000134900.13	transcript	ENST00000376052.5	protein_coding	14/29		INFO_REALIGN_3_PRIME	chr13	TogoVar
TPSD1_chr16_1251069_1264008	1258866	T T	TGAGCCCC others(14): Show TGAGCCCCCTCCTCCATCCTGA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0001 a0001c0001t0023g0001	1	262	0.0038	21	c.49 others(30): Show c.491_*492insAGCCCCCTCCTCCATCCTGAG	TPSD1	ENSG00000095917.15	transcript	ENST00000211076.5	protein_coding	5/5	492	INFO_REALIGN_3_PRIME	chr16	TogoVar
TPST1_chr7_66200334_66365443	66328906	A A	ATATATAT others(14): Show ATATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	NA18949.hp2 NA18949.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0159 a0001c0001t0002g0159	1	93	0.0108	21	c.104 others(42): Show c.1045-23598_1045-23597insATATATATATATATATTTTTT	TPST1	ENSG00000169902.15	transcript	ENST00000304842.6	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr7	TogoVar
TPST2_chr22_26516996_26595132	26530631	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02647.hp2 HG03516.hp1 HG02257.hp1 HG02647.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0010 a0001c0003t0041 a0001c0001t0010 a0001c0003t0041	a0001c0001t0010g0180 a0001c0001t0010g0181 a0001c0003t0041g0377 a0001c0001t0010g0180 a0001c0001t0010g0181 a0001c0003t0041g0377	3	207	0.0145	21	c.109 others(40): Show c.1092+2063_1092+2064insTTTTTTTTTTTTTTTTTTTTT	TPST2	ENSG00000128294.16	transcript	ENST00000338754.9	protein_coding	5/6			chr22	TogoVar
TPTE2_chr13_19417877_19566532	19565207	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG00621.hp1 others(31): Show HG00438.hp1 HG00438.hp2 HG00621.hp1 HG00673.hp2 HG00738.hp1 HG01071.hp1 HG01099.hp2 HG01106.hp2 HG01255.hp2 HG01361.hp1 HG01496.hp2 HG01516.hp2 HG01517.hp2 HG01928.hp1 HG02055.hp1 HG02080.hp2 HG02135.hp1 HG02148.hp1 HG02615.hp2 HG02630.hp2 HG02738.hp1 HG02738.hp2 HG03491.hp1 HG03492.hp2 HG03834.hp2 NA18995.hp1 NA19000.hp2 NA19007.hp2 NA19009.hp1 NA19081.hp1 NA19081.hp2 NA19240.hp1 NA20129.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0012 a0001c0001 a0001c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0012t0001	a0001c0001t0001g0121 a0001c0001t0001g0137 a0001c0001t0001g0138 others(31): Show a0001c0001t0001g0121 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0141 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0154 a0001c0001t0001g0158 a0001c0001t0001g0162 a0001c0001t0001g0164 a0001c0001t0001g0168 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0184 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0208 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0002g0069 a0001c0001t0002g0101 a0001c0001t0002g0104 a0001c0001t0004g0198 a0001c0012t0001g0159	34	37	0.9189	21	c.-40 others(32): Show c.-4023_-4022insAAAAAAAAAAAAAAAAAAAAA	TPTE2	ENSG00000132958.19	transcript	ENST00000697147.1	protein_coding		3676		chr13	TogoVar
TRAF3IP3_chr1_209751053_209787310	209765212	A A	AGAGAGAG others(14): Show AGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA18982.hp2 NA18982.hp2	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0002 a0002c0010t0002	a0002c0010t0002g0062 a0002c0010t0002g0062	1	435	0.0023	21	c.702 others(38): Show c.702+1626_702+1627insAGAGAGAGAGAGAGAGAGAGG	TRAF3IP3	ENSG00000009790.15	transcript	ENST00000367025.8	protein_coding	8/16		INFO_REALIGN_3_PRIME	chr1	TogoVar
TRAF3IP3_chr1_209751053_209787310	209765213	G G	GAGAGAGA others(14): Show GAGAGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	NA18985.hp1 NA18985.hp1	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0002 a0002c0010t0002	a0002c0010t0002g0062 a0002c0010t0002g0062	1	315	0.0032	21	c.702 others(38): Show c.702+1626_702+1627insAGAGAGAGAGAGAGAGAGAGA	TRAF3IP3	ENSG00000009790.15	transcript	ENST00000367025.8	protein_coding	8/16			chr1	TogoVar
TRAF3_chr14_102772449_102916500	102811913	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19080.hp1 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0069 a0001c0001t0069	a0001c0001t0069g0093 a0001c0001t0069g0093	1	16	0.0625	21	c.-15 others(42): Show c.-156-18411_-156-18391dupTTTTTTTTTTTTTTTTTTTTT	TRAF3	ENSG00000131323.17	transcript	ENST00000392745.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr14	TogoVar
TRAF3_chr14_102772449_102916500	102820614	A A	ATATATAT others(14): Show ATATATATATATATATATATTT	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0038 a0001c0001t0008g0038	1	204	0.0049	21	c.-15 others(40): Show c.-156-9719_-156-9718insATATATATATATATATATTTT	TRAF3	ENSG00000131323.17	transcript	ENST00000392745.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr14	TogoVar
TRAF3_chr14_102772449_102916500	102820614	A A	ATATATAT others(14): Show ATATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0145 a0001c0001t0017g0145	1	204	0.0049	21	c.-15 others(40): Show c.-156-9719_-156-9718insATATATATATATATATTTTTT	TRAF3	ENSG00000131323.17	transcript	ENST00000392745.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr14	TogoVar
TRAF3_chr14_102772449_102916500	102820614	A A	ATATATAT others(14): Show ATATATATATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0121 a0001c0001t0007g0121	1	204	0.0049	21	c.-15 others(40): Show c.-156-9719_-156-9718insATATATATTTTTTTTTTTTTT	TRAF3	ENSG00000131323.17	transcript	ENST00000392745.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr14	TogoVar
TRAF6_chr11_36478769_36515272	36494053	T T	TTGGCTGG others(14): Show TTGGCTGGCTGTGTGGGGGGGC	intron_variant intron_variant	MODIFIER	NA19066.hp1 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0098 a0001c0001t0002g0098	1	386	0.0026	21	c.678 others(36): Show c.678+922_678+923insGCCCCCCCACACAGCCAGCCA	TRAF6	ENSG00000175104.15	transcript	ENST00000526995.6	protein_coding	5/6			chr11	TogoVar
TRAK1_chr3_42086357_42230890	42226072	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01261.hp1 HG01934.hp2 HG02280.hp2 others(9): Show HG01261.hp1 HG01934.hp2 HG02280.hp2 HG02523.hp1 HG02896.hp1 HG02965.hp2 HG04115.hp2 NA18965.hp1 NA18991.hp1 NA19012.hp2 NA19066.hp1 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0001c0008	a0001c0001t0002 a0001c0001t0004 a0001c0001t0013 others(6): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0013 a0001c0002t0004 a0001c0002t0011 a0001c0002t0014 a0001c0003t0002 a0001c0006t0005 a0001c0008t0012	a0001c0001t0002g0095 a0001c0001t0002g0107 a0001c0001t0002g0116 others(9): Show a0001c0001t0002g0095 a0001c0001t0002g0107 a0001c0001t0002g0116 a0001c0001t0004g0263 a0001c0001t0004g0279 a0001c0001t0013g0285 a0001c0002t0004g0186 a0001c0002t0011g0046 a0001c0002t0014g0131 a0001c0003t0002g0082 a0001c0006t0005g0008 a0001c0008t0012g0143	12	32	0.3750	21	c.23 others(32): Show c.2335_*2336insTTTTTTTTTTTTTTTTTTTTT	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding		183		chr3	TogoVar
TRAM2_chr6_52492408_52582060	52493385	T T	TATATATA others(14): Show TATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0068 a0001c0001t0006g0068	1	374	0.0027	21	c.98 others(32): Show c.9811_*9812insTATATATATATATATATATAT	TRAM2	ENSG00000065308.5	transcript	ENST00000182527.4	protein_coding		4022		chr6	TogoVar
TRANK1_chr3_36821819_36950054	36900851	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00597.hp1 HG01106.hp2 others(3): Show HG00099.hp2 HG00597.hp1 HG01106.hp2 HG01346.hp2 HG01978.hp1 NA18972.hp1	a0001 a0001	a0001c0001 a0001c0012 a0001c0001 a0001c0012	a0001c0001t0001 a0001c0001t0002 a0001c0012t0001 a0001c0001t0001 a0001c0001t0002 a0001c0012t0001	a0001c0001t0001g0093 a0001c0001t0001g0113 a0001c0001t0002g0283 others(3): Show a0001c0001t0001g0093 a0001c0001t0001g0113 a0001c0001t0002g0283 a0001c0001t0002g0284 a0001c0001t0002g0300 a0001c0012t0001g0248	6	12	0.5000	21	c.283 others(38): Show c.283-1613_283-1593dupTTTTTTTTTTTTTTTTTTTTT	TRANK1	ENSG00000168016.15	transcript	ENST00000645898.2	protein_coding	3/23			chr3	TogoVar
TRANK1_chr3_36821819_36950054	36942827	G G	GTGAAGTT others(14): Show GTGAAGTTAACAATTTATGAAC	intron_variant intron_variant	MODIFIER	NA20805.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0299 a0001c0001t0002g0299	1	328	0.0030	21	c.23+ others(36): Show c.23+1959_23+1960insGTTCATAAATTGTTAACTTCA	TRANK1	ENSG00000168016.15	transcript	ENST00000645898.2	protein_coding	1/23			chr3	TogoVar
TRAP1_chr16_3653037_3722524	3653806	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01256.hp1 HG01256.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0163 a0001c0001t0001g0163	1	43	0.0233	21	c.43 others(32): Show c.4302_*4322dupTTTTTTTTTTTTTTTTTTTTT	TRAP1	ENSG00000126602.11	transcript	ENST00000246957.10	protein_coding		4230		chr16	TogoVar
TRAP1_chr16_3653037_3722524	3670382	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02896.hp1 HG02970.hp1 others(1): Show HG02572.hp1 HG02896.hp1 HG02970.hp1 HG03927.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0003 a0003c0004 a0001c0001 a0001c0003 a0003c0004	a0001c0001t0001 a0001c0003t0001 a0003c0004t0001 a0001c0001t0001 a0001c0003t0001 a0003c0004t0001	a0001c0001t0001g0400 a0001c0003t0001g0115 a0001c0003t0001g0379 others(1): Show a0001c0001t0001g0400 a0001c0003t0001g0115 a0001c0003t0001g0379 a0003c0004t0001g0097	4	130	0.0308	21	c.123 others(40): Show c.1235+1319_1235+1339dupTTTTTTTTTTTTTTTTTTTTT	TRAP1	ENSG00000126602.11	transcript	ENST00000246957.10	protein_coding	11/17			chr16	TogoVar
TRAPPC13_chr5_65620027_65671233	65627131	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0034 a0001c0001t0001g0034	1	111	0.0090	21	c.46+ others(36): Show c.46+2031_46+2051dupAAAAAAAAAAAAAAAAAAAAA	TRAPPC13	ENSG00000113597.18	transcript	ENST00000399438.8	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr5	TogoVar
TRAPPC2_chrX_13707245_13739620	13722208	C C	CAGCAAAA others(14): Show CAGCAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0155 a0001c0001t0003g0155	1	87	0.0115	21	c.-19 others(38): Show c.-19-2227_-19-2226insTTTTTTTTTTTTTTTTTTGCT	TRAPPC2	ENSG00000196459.15	transcript	ENST00000380579.6	protein_coding	2/5			chrX	TogoVar
TRAPPC3L_chr6_116489989_116550684	116494961	A A	ATATATAT others(14): Show ATATATATATATATATTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19085.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0159 a0001c0001t0002g0159	1	131	0.0076	21	c.19 others(32): Show c.1992_*1993insAAAAAAATATATATATATATA	TRAPPC3L	ENSG00000173626.10	transcript	ENST00000368602.4	protein_coding		27		chr6	TogoVar
TRAPPC6A_chr19_45157933_45183237	45180235	A A	AATTTTTT others(14): Show AATTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02572.hp1 NA18906.hp2 HG02572.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0179 a0001c0001t0001g0181 a0001c0001t0001g0179 a0001c0001t0001g0181	2	259	0.0077	21	c.-20 others(32): Show c.-2018_-2017insAAAAAAAAAAAAAAAAAAAAT	TRAPPC6A	ENSG00000007255.10	transcript	ENST00000585934.1	protein_coding		1999		chr19	TogoVar
TRAPPC8_chr18_31824197_31948128	31872107	T T	TTCTCATC others(14): Show TTCTCATCCTTCATTCCCTACC	intron_variant intron_variant	MODIFIER	NA19067.hp1 NA19067.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0286 a0002c0002t0002g0286	1	348	0.0029	21	c.206 others(39): Show c.2063-1008_2063-988dupGGTAGGGAATGAAGGATGAGA	TRAPPC8	ENSG00000153339.15	transcript	ENST00000283351.10	protein_coding	14/28			chr18	TogoVar
TRAPPC8_chr18_31824197_31948128	31933020	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02109.hp1 HG01109.hp1 HG02109.hp1	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0001 a0003c0006t0001	a0003c0006t0001g0276 a0003c0006t0001g0277 a0003c0006t0001g0276 a0003c0006t0001g0277	2	339	0.0059	21	c.158 others(38): Show c.158-1498_158-1497insCTTTTTTTTTTTTTTTTTTTT	TRAPPC8	ENSG00000153339.15	transcript	ENST00000283351.10	protein_coding	1/28			chr18	TogoVar
TRAPPC8_chr18_31824197_31948128	31935548	T T	TAAAAAAA others(14): Show TAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp2 HG03654.hp2 HG03225.hp1 HG03225.hp2 HG03654.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0009 a0001c0001t0001 a0002c0002t0009	a0001c0001t0001g0170 a0001c0001t0001g0171 a0002c0002t0009g0177 a0001c0001t0001g0170 a0001c0001t0001g0171 a0002c0002t0009g0177	3	4	0.7500	21	c.158 others(38): Show c.158-4026_158-4025insTTTTTTTTTTTTTTTTTTTTT	TRAPPC8	ENSG00000153339.15	transcript	ENST00000283351.10	protein_coding	1/28			chr18	TogoVar
TRAPPC8_chr18_31824197_31948128	31935548	T T	TGAAAAAA others(14): Show TGAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01978.hp2 HG02258.hp2 others(3): Show HG01358.hp2 HG01978.hp2 HG02258.hp2 HG02559.hp2 HG02683.hp1 HG02698.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0305 a0001c0001t0003g0306 a0001c0001t0003g0312 others(3): Show a0001c0001t0003g0305 a0001c0001t0003g0306 a0001c0001t0003g0312 a0001c0001t0003g0334 a0001c0001t0003g0338 a0001c0001t0003g0340	6	7	0.8571	21	c.158 others(38): Show c.158-4026_158-4025insTTTTTTTTTTTTTTTTTTTTC	TRAPPC8	ENSG00000153339.15	transcript	ENST00000283351.10	protein_coding	1/28			chr18	TogoVar
TRAPPC9_chr8_139722725_140462744	140018324	A A	ATTTTTTC others(14): Show ATTTTTTCTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0067 a0001c0001t0001g0067	1	51	0.0196	21	c.269 others(40): Show c.2699+5612_2699+5613insAAAAAAAAAAAAAAGAAAAAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	18/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140156940	C C	CTTTCCAT others(14): Show CTTTCCATTCAAAAGCCTCCCT	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0005 a0005	a0005c0021 a0005c0021	a0005c0021t0002 a0005c0021t0002	a0005c0021t0002g0029 a0005c0021t0002g0029	1	90	0.0111	21	c.255 others(42): Show c.2556+64498_2556+64518dupAGGGAGGCTTTTGAATGGAAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	17/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140156940	C C	CTTTCCAT others(14): Show CTTTCCATTCAGAAGCCTCCCT	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0013 a0001c0002t0013	a0001c0002t0013g0005 a0001c0002t0013g0005	1	90	0.0111	21	c.255 others(42): Show c.2556+64518_2556+64519insAGGGAGGCTTCTGAATGGAAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	17/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140157096	G G	GAAGCCTC others(14): Show GAAGCCTCCCTTTTCCATTCAA	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0028 a0001c0004t0028	a0001c0004t0028g0098 a0001c0004t0028g0098	1	62	0.0161	21	c.255 others(42): Show c.2556+64362_2556+64363insTTGAATGGAAAAGGGAGGCTT	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	17/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140157326	A A	GAAGCCTC others(14): Show GAAGCCTCCCTTTTCCATTCAA	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0002 a0002	a0002c0023 a0002c0023	a0002c0023t0006 a0002c0023t0006	a0002c0023t0006g0035 a0002c0023t0006g0035	1	49	0.0204	21	c.255 others(42): Show c.2556+64133_2556+64134insTGAATGGAAAAGGGAGGCTTC	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	17/22			chr8	TogoVar

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