Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SNTG2_chr2_945849_1372613	1272495	T T	TAGGACAT others(19): Show TAGGACATCCCAGGAGCAGGTGTAGAA	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00673.hp2 HG00735.hp1 others(77): Show HG00642.hp1 HG00673.hp2 HG00735.hp1 HG01099.hp1 HG01106.hp1 HG01169.hp2 HG01192.hp1 HG01256.hp2 HG01257.hp2 HG01261.hp1 HG01346.hp2 HG01361.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01891.hp1 HG02015.hp2 HG02109.hp2 HG02132.hp2 HG02145.hp1 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02717.hp1 HG02717.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp2 HG03490.hp2 HG03540.hp1 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03710.hp1 HG03710.hp2 HG03942.hp2 HG04184.hp1 NA18522.hp1 NA18522.hp2 NA18942.hp2 NA18961.hp1 NA18968.hp2 NA18969.hp1 NA18970.hp1 NA18970.hp2 NA18983.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp2 NA19000.hp1 NA19000.hp2 NA19030.hp2 NA19043.hp1 NA20129.hp2 NA21309.hp1	a0003 a0004 a0005 others(8): Show a0003 a0004 a0005 a0006 a0008 a0009 a0012 a0013 a0018 a0019 a0021	a0003c0007 a0003c0008 a0003c0026 others(15): Show a0003c0007 a0003c0008 a0003c0026 a0004c0004 a0004c0014 a0005c0006 a0005c0015 a0006c0009 a0006c0010 a0006c0028 a0008c0011 a0008c0031 a0009c0012 a0012c0019 a0013c0018 a0018c0035 a0019c0030 a0021c0027	a0003c0007t0001 a0003c0007t0002 a0003c0008t0001 others(20): Show a0003c0007t0001 a0003c0007t0002 a0003c0008t0001 a0003c0008t0002 a0003c0026t0001 a0004c0004t0001 a0004c0004t0002 a0004c0014t0001 a0004c0014t0002 a0005c0006t0001 a0005c0006t0002 a0005c0015t0001 a0006c0009t0001 a0006c0010t0001 a0006c0028t0001 a0008c0011t0001 a0008c0031t0001 a0009c0012t0001 a0012c0019t0001 a0013c0018t0001 a0018c0035t0001 a0019c0030t0001 a0021c0027t0001	a0003c0007t0001g0007 a0003c0007t0001g0019 a0003c0007t0001g0060 others(77): Show a0003c0007t0001g0007 a0003c0007t0001g0019 a0003c0007t0001g0060 a0003c0007t0001g0068 a0003c0007t0001g0080 a0003c0007t0001g0104 a0003c0007t0001g0116 a0003c0007t0001g0184 a0003c0007t0002g0075 a0003c0007t0002g0077 a0003c0008t0001g0011 a0003c0008t0001g0044 a0003c0008t0001g0059 a0003c0008t0001g0096 a0003c0008t0001g0102 a0003c0008t0001g0105 a0003c0008t0001g0132 a0003c0008t0001g0190 a0003c0008t0002g0072 a0003c0026t0001g0097 a0004c0004t0001g0040 a0004c0004t0001g0047 a0004c0004t0001g0065 a0004c0004t0001g0087 a0004c0004t0001g0088 a0004c0004t0001g0112 a0004c0004t0001g0124 a0004c0004t0001g0142 a0004c0004t0001g0149 a0004c0004t0001g0150 a0004c0004t0001g0151 a0004c0004t0001g0169 a0004c0004t0001g0177 a0004c0004t0001g0180 a0004c0004t0001g0181 a0004c0004t0002g0074 a0004c0014t0001g0036 a0004c0014t0001g0054 a0004c0014t0002g0001 a0005c0006t0001g0020 a0005c0006t0001g0079 a0005c0006t0001g0081 a0005c0006t0001g0082 a0005c0006t0001g0083 a0005c0006t0001g0085 a0005c0006t0001g0086 a0005c0006t0001g0176 a0005c0006t0001g0189 a0005c0006t0002g0003 a0005c0015t0001g0037 a0005c0015t0001g0103 a0005c0015t0001g0153 a0006c0009t0001g0028 a0006c0009t0001g0048 a0006c0009t0001g0050 a0006c0009t0001g0093 a0006c0009t0001g0129 a0006c0009t0001g0162 a0006c0010t0001g0008 a0006c0010t0001g0010 a0006c0010t0001g0033 a0006c0010t0001g0043 a0006c0010t0001g0165 a0006c0028t0001g0127 a0008c0011t0001g0004 a0008c0011t0001g0135 a0008c0011t0001g0182 a0008c0011t0001g0188 a0008c0031t0001g0117 a0009c0012t0001g0066 a0009c0012t0001g0091 a0009c0012t0001g0146 a0009c0012t0001g0163 a0012c0019t0001g0138 a0012c0019t0001g0157 a0013c0018t0001g0045 a0013c0018t0001g0046 a0018c0035t0001g0071 a0019c0030t0001g0160 a0021c0027t0001g0136	80	188	0.4255	26	c.128 others(45): Show c.1284+4939_1284+4964dupGCAGGTGTAGAAAGGACATCCCAGGA	SNTG2	ENSG00000172554.12	transcript	ENST00000308624.10	protein_coding	14/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
SNX10_chr7_26286862_26379383	26325306	A A	AATATATA others(19): Show AATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01257.hp1 HG01258.hp1 others(7): Show HG00140.hp2 HG01257.hp1 HG01258.hp1 HG01261.hp2 HG02056.hp2 HG02809.hp1 HG06807.hp2 NA18947.hp2 NA19085.hp1 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0032 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0032 a0001c0001t0035	a0001c0001t0001g0074 a0001c0001t0001g0105 a0001c0001t0001g0153 others(6): Show a0001c0001t0001g0074 a0001c0001t0001g0105 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0158 a0001c0001t0002g0004 a0001c0001t0002g0122 a0001c0001t0032g0340 a0001c0001t0035g0338	10	16	0.6250	26	c.-23 others(45): Show c.-23-21092_-23-21091insATATATATATATATATATATATATAT	SNX10	ENSG00000086300.17	transcript	ENST00000338523.9	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr7	TogoVar
SNX12_chrX_71054247_71073334	71071544	T T	TATATAAA others(19): Show TATATAAATATATAATATTATATATTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0011 a0001c0001t0001g0011	1	225	0.0044	26	c.-32 others(37): Show c.-3239_-3238insTAATATATAATATTATATATTTATAT	SNX12	ENSG00000147164.12	transcript	ENST00000374274.8	protein_coding		3211		chrX	TogoVar
SNX12_chrX_71054247_71073334	71071597	A A	ATATATTA others(19): Show ATATATTATATATAAATATATAATAAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp1 HG02280.hp1 HG02280.hp2 others(9): Show HG02055.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02559.hp2 HG02886.hp2 HG03130.hp1 HG03195.hp2 HG03486.hp2 HG03540.hp1 NA19030.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0018 a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0018	12	306	0.0392	26	c.-32 others(37): Show c.-3292_-3291insATTATTATATATTTATATATAATATA	SNX12	ENSG00000147164.12	transcript	ENST00000374274.8	protein_coding		3264		chrX	TogoVar
SNX13_chr7_17785761_17945494	17805250	T T	TGTGTGTG others(19): Show TGTGTGTGTGCGCGTGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0305 a0001c0002t0002g0305	1	252	0.0040	26	c.206 others(45): Show c.2065-1671_2065-1670insGCGCGCGCGCGCACGCGCACACACAC	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	20/25			chr7	TogoVar
SNX13_chr7_17785761_17945494	17805250	T T	TGTGTGTG others(19): Show TGTGTGTGTGCGTGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG01993.hp1 HG01993.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0002 a0001c0008t0002	a0001c0008t0002g0324 a0001c0008t0002g0324	1	252	0.0040	26	c.206 others(45): Show c.2065-1671_2065-1670insGCGCGCGCGCGCGCACGCACACACAC	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	20/25			chr7	TogoVar
SNX13_chr7_17785761_17945494	17805250	T T	TGTGTGTG others(19): Show TGTGTGTGTGTGCGTGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0024 a0001c0002t0024	a0001c0002t0024g0257 a0001c0002t0024g0257	1	252	0.0040	26	c.206 others(45): Show c.2065-1671_2065-1670insGCGCGCGCGCGCACGCACACACACAC	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	20/25			chr7	TogoVar
SNX13_chr7_17785761_17945494	17805250	T T	TGTGTGTG others(19): Show TGTGTGTGTGTGTGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0135 a0001c0001t0001g0135	1	252	0.0040	26	c.206 others(45): Show c.2065-1671_2065-1670insGCGCGCGCGCGCGCACACACACACAC	SNX13	ENSG00000071189.21	transcript	ENST00000428135.7	protein_coding	20/25			chr7	TogoVar
SNX15_chr11_65022439_65045572	65039029	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0051 a0001c0002t0002g0051	1	157	0.0064	26	c.922 others(41): Show c.922+219_922+220insTTTTTTTTTTTTTTTTTTTTTTTTTT	SNX15	ENSG00000110025.13	transcript	ENST00000377244.8	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr11	TogoVar
SNX16_chr8_81794583_81847185	81842391	A A	AGAGAGAG others(19): Show AGAGAGAGAGAGAGAGAGAGAGAGAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0181 a0001c0001t0006g0181	1	222	0.0045	26	c.-36 others(35): Show c.-367_-366insCCTCTCTCTCTCTCTCTCTCTCTCTC	SNX16	ENSG00000104497.15	transcript	ENST00000345957.9	protein_coding		207		chr8	TogoVar
SNX18_chr5_54512759_54551586	54513519	C C	CACACGCA others(19): Show CACACGCATGTGTGTGTACACATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02622.hp1 HG03098.hp2 HG03453.hp2 others(1): Show HG02622.hp1 HG03098.hp2 HG03453.hp2 NA21309.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0009 a0001c0008t0009	a0001c0008t0009g0197 a0001c0008t0009g0198 a0001c0008t0009g0199 others(1): Show a0001c0008t0009g0197 a0001c0008t0009g0198 a0001c0008t0009g0199 a0001c0008t0009g0200	4	388	0.0103	26	c.-44 others(37): Show c.-4434_-4433insACACGCATGTGTGTGTACACATATAT	SNX18	ENSG00000178996.14	transcript	ENST00000381410.5	protein_coding		4239		chr5	TogoVar
SNX1_chr15_64090982_64149231	64124147	C C	CATATATA others(19): Show CATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0223 a0001c0002t0005g0223	1	7	0.1429	26	c.510 others(41): Show c.510+608_510+633dupATATATATATATATATATATATATAT	SNX1	ENSG00000028528.15	transcript	ENST00000559844.6	protein_coding	5/14		INFO_REALIGN_3_PRIME	chr15	TogoVar
SNX24_chr5_122840613_123014205	122964247	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0255 a0001c0001t0003g0255	1	192	0.0052	26	c.249 others(45): Show c.249+18113_249+18114insAAAAAAAAAAAAAAAAAAAAAAAAAA	SNX24	ENSG00000064652.11	transcript	ENST00000261369.9	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX25_chr4_185204598_185368966	185300839	T T	TCACACAC others(19): Show TCACACACACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0203 a0001c0001t0001g0203	1	273	0.0037	26	c.116 others(45): Show c.1163-9796_1163-9795insCACACACACACACACACACACACACA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	6/18			chr4	TogoVar
SNX25_chr4_185204598_185368966	185360950	T T	TATATATA others(19): Show TATATATATATATATATATATAGATAG	intron_variant intron_variant	MODIFIER	HG02735.hp2 NA18964.hp1 NA19063.hp1 HG02735.hp2 NA18964.hp1 NA19063.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0062 a0001c0003t0001g0106 a0001c0003t0001g0143 a0001c0003t0001g0062 a0001c0003t0001g0106 a0001c0003t0001g0143	3	252	0.0119	26	c.265 others(43): Show c.2652-971_2652-970insTATATATATATATATATAGATAGATA	SNX25	ENSG00000109762.17	transcript	ENST00000652585.2	protein_coding	16/18		INFO_REALIGN_3_PRIME	chr4	TogoVar
SNX27_chr1_151607050_151704080	151641598	G G	GATATATA others(19): Show GATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03139.hp2 NA18972.hp1 HG03139.hp2 NA18972.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0081 a0001c0001t0005 a0001c0001t0081	a0001c0001t0005g0013 a0001c0001t0081g0090 a0001c0001t0005g0013 a0001c0001t0081g0090	2	13	0.1538	26	c.543 others(43): Show c.543+2486_543+2511dupATATATATATATATATATATATATAT	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX27_chr1_151607050_151704080	151681235	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01516.hp1 HG03195.hp2 HG03239.hp1 others(4): Show HG01516.hp1 HG03195.hp2 HG03239.hp1 NA18940.hp1 NA18948.hp1 NA18950.hp1 NA18979.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0080 others(1): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0080 a0001c0001t0100	a0001c0001t0001g0211 a0001c0001t0001g0213 a0001c0001t0001g0233 others(4): Show a0001c0001t0001g0211 a0001c0001t0001g0213 a0001c0001t0001g0233 a0001c0001t0001g0271 a0001c0001t0008g0249 a0001c0001t0080g0270 a0001c0001t0100g0096	7	125	0.0560	26	c.115 others(45): Show c.1150-2097_1150-2096insTTTTTTTTTTTTTTTTTTTTTTTTTT	SNX27	ENSG00000143376.14	transcript	ENST00000458013.7	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
SNX29_chr16_11971734_12579287	11979275	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0065 a0001c0001t0002g0065	1	9	0.1111	26	c.7+2 others(39): Show c.7+2486_7+2487insAAAAAAAAAAAAAAAAAAAAAAAAAA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	1/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12013500	A A	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00733.hp2	a0003 a0003	a0003c0008 a0003c0008	a0003c0008t0011 a0003c0008t0011	a0003c0008t0011g0145 a0003c0008t0011g0145	1	54	0.0185	26	c.122 others(45): Show c.122+10458_122+10459insAAAAAAAAAAAAAATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12462017	A A	ATATATAT others(19): Show ATATATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG03491.hp2 HG03491.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0093 a0001c0004t0093	a0001c0004t0093g0151 a0001c0004t0093g0151	1	136	0.0074	26	c.203 others(47): Show c.2038-15702_2038-15701insTATATATATATATATATATATATA TG	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20			chr16	TogoVar
SNX29_chr16_11971734_12579287	12476415	T T	TATATATA others(19): Show TATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03491.hp1 HG03491.hp1	a0008 a0008	a0008c0010 a0008c0010	a0008c0010t0098 a0008c0010t0098	a0008c0010t0098g0022 a0008c0010t0098g0022	1	164	0.0061	26	c.203 others(45): Show c.2038-1279_2038-1278insCATATATATATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12476417	T T	TATATATA others(19): Show TATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA18979.hp2 NA18979.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0063 a0001c0002t0063	a0001c0002t0063g0135 a0001c0002t0063g0135	1	161	0.0062	26	c.203 others(45): Show c.2038-1277_2038-1276insCATATATATATATATATATATATATA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12512367	A A	AATATATA others(19): Show AATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0016 a0001c0003t0016	a0001c0003t0016g0029 a0001c0003t0016g0029	1	127	0.0079	26	c.217 others(47): Show c.2179-12334_2179-12333insTATATATATATATATATATATATA TA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	19/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX29_chr16_11971734_12579287	12512369	A A	AATATATA others(19): Show AATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0043 a0002c0005t0043	a0002c0005t0043g0089 a0002c0005t0043g0089	1	36	0.0278	26	c.217 others(47): Show c.2179-12309_2179-12284dupTATATATATATATATATATATATA TA	SNX29	ENSG00000048471.14	transcript	ENST00000566228.6	protein_coding	19/20		INFO_REALIGN_3_PRIME	chr16	TogoVar
SNX2_chr5_122770080_122839543	122806142	G G	GCACACGC others(19): Show GCACACGCACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01175.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0066 a0001c0002t0066	a0001c0002t0066g0212 a0001c0002t0066g0212	1	15	0.0667	26	c.644 others(43): Show c.644-2130_644-2129insGCACACACACACACACACACACACAC	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX2_chr5_122770080_122839543	122806142	G G	GCACGCAC others(19): Show GCACGCACACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG01934.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0241 a0001c0001t0014g0241	1	15	0.0667	26	c.644 others(43): Show c.644-2132_644-2131insGCACACACACACACACACACACACAC	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX2_chr5_122770080_122839543	122806142	G G	GCACGCGC others(19): Show GCACGCGCGCACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0040 a0001c0001t0040	a0001c0001t0040g0165 a0001c0001t0040g0165	1	15	0.0667	26	c.644 others(43): Show c.644-2132_644-2131insGCGCGCACACACACACACACACACAC	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX2_chr5_122770080_122839543	122806142	G G	GCGCACGC others(19): Show GCGCACGCACGCACACACACACACACA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG03041.hp1 HG01891.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0196 a0001c0001t0011g0200 a0001c0001t0011g0196 a0001c0001t0011g0200	2	16	0.1250	26	c.644 others(43): Show c.644-2134_644-2133insGCACGCACGCACACACACACACACAC	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX2_chr5_122770080_122839543	122806142	G G	GCGCGCAC others(19): Show GCGCGCACACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG01258.hp1 HG01258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0253 a0001c0001t0004g0253	1	15	0.0667	26	c.644 others(43): Show c.644-2134_644-2133insGCGCACACACACACACACACACACAC	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX2_chr5_122770080_122839543	122806142	G G	GCGCGCAC others(19): Show GCGCGCACGCACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG02451.hp1 HG03225.hp1 others(2): Show HG01346.hp2 HG02451.hp1 HG03225.hp1 HG03486.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0014 a0001c0001t0004 a0001c0001t0014	a0001c0001t0004g0016 a0001c0001t0014g0239 a0001c0001t0014g0240 others(1): Show a0001c0001t0004g0016 a0001c0001t0014g0239 a0001c0001t0014g0240 a0001c0001t0014g0243	5	19	0.2632	26	c.644 others(43): Show c.644-2134_644-2133insGCGCACGCACACACACACACACACAC	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX2_chr5_122770080_122839543	122806142	G G	GCGCGCAC others(19): Show GCGCGCACGCGCACACACACACACACA	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01069.hp1 HG01993.hp2 others(2): Show HG00639.hp2 HG01069.hp1 HG01993.hp2 HG02148.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0085 a0001c0001t0003g0158 a0001c0001t0003g0184 others(2): Show a0001c0001t0003g0085 a0001c0001t0003g0158 a0001c0001t0003g0184 a0001c0001t0004g0150 a0001c0001t0004g0193	5	19	0.2632	26	c.644 others(43): Show c.644-2134_644-2133insGCGCACGCGCACACACACACACACAC	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX2_chr5_122770080_122839543	122806142	G G	GCGCGCAC others(19): Show GCGCGCACGCGCGCACACACACACACA	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0175 a0001c0001t0019g0175	1	15	0.0667	26	c.644 others(43): Show c.644-2134_644-2133insGCGCACGCGCGCACACACACACACAC	SNX2	ENSG00000205302.7	transcript	ENST00000379516.7	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
SNX30_chr9_112745760_112879987	112865657	A A	ATGTGTGT others(19): Show ATGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00408.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0037 a0002c0003t0037	a0002c0003t0037g0020 a0002c0003t0037g0020	1	278	0.0036	26	c.125 others(45): Show c.1254+1259_1254+1260insGTGTGTGTGTGTGTGTGTGTGTGTGT	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX30_chr9_112745760_112879987	112865661	A A	ATATATAT others(19): Show ATATATATATATATATATATGTGTGTG	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0326 a0001c0002t0007g0326	1	76	0.0132	26	c.125 others(45): Show c.1254+1263_1254+1264insATATATATATATATATATGTGTGTGT	SNX30	ENSG00000148158.17	transcript	ENST00000374232.8	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
SNX32_chr11_65828963_65858701	65839223	G G	GTTTTTTT others(19): Show GTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01258.hp2 HG01258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	285	0.0035	26	c.36+ others(41): Show c.36+5123_36+5124insTTTTTTTTTTTTTTTTTTTTTTTTTT	SNX32	ENSG00000172803.18	transcript	ENST00000308342.7	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr11	TogoVar
SNX32_chr11_65828963_65858701	65839225	A A	ATTTTTTT others(19): Show ATTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02145.hp1 HG02145.hp2 others(2): Show HG02109.hp2 HG02145.hp1 HG02145.hp2 HG02647.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0001 a0001c0001t0002 a0001c0009t0002 a0001c0001t0001 a0001c0001t0002 a0001c0009t0002	a0001c0001t0001g0183 a0001c0001t0002g0024 a0001c0001t0002g0187 others(1): Show a0001c0001t0001g0183 a0001c0001t0002g0024 a0001c0001t0002g0187 a0001c0009t0002g0165	5	29	0.1724	26	c.36+ others(41): Show c.36+5146_36+5147insTTTTTTTTTTTTTTTTTTTTTTTTTT	SNX32	ENSG00000172803.18	transcript	ENST00000308342.7	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr11	TogoVar
SNX4_chr3_125441650_125525202	125495250	T T	TTATATAT others(19): Show TTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG01169.hp1 HG01257.hp1 others(9): Show HG00423.hp2 HG01169.hp1 HG01257.hp1 HG01258.hp1 HG01928.hp1 HG02056.hp2 HG02273.hp1 HG03710.hp1 HG04199.hp1 NA18969.hp1 NA18999.hp2 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0024 others(9): Show a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0069 a0001c0001t0001g0074 a0001c0001t0001g0094 a0001c0001t0001g0141	12	258	0.0465	26	c.597 others(43): Show c.597+2065_597+2090dupTATATATATATATATATATATATATA	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495275	T T	TATATATA others(19): Show TATATATATATATATATACACACACAC	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG02717.hp1 HG01099.hp2 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0153 a0001c0001t0001g0015 a0001c0001t0001g0153	2	258	0.0078	26	c.597 others(43): Show c.597+2065_597+2066insGTGTGTGTGTATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495275	T T	TATATATA others(19): Show TATATATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0253 a0001c0001t0001g0253	1	257	0.0039	26	c.597 others(43): Show c.597+2065_597+2066insGTGTGTGTATATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495275	T T	TATATATA others(19): Show TATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02148.hp2 HG03098.hp2 HG02109.hp1 HG02148.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0345 a0001c0001t0001g0346 a0001c0001t0001g0349 a0001c0001t0001g0345 a0001c0001t0001g0346 a0001c0001t0001g0349	3	259	0.0116	26	c.597 others(43): Show c.597+2065_597+2066insGTGTATATATATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495275	T T	TATATATA others(19): Show TATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0220 a0001c0001t0002g0220	1	257	0.0039	26	c.597 others(43): Show c.597+2065_597+2066insGTATATATATATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495277	T T	TATATATA others(19): Show TATATATATATATATATACACATACAC	intron_variant intron_variant	MODIFIER	NA18969.hp2 NA18969.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0267 a0001c0001t0002g0267	1	208	0.0048	26	c.597 others(43): Show c.597+2063_597+2064insGTGTATGTGTATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495277	T T	TATATATA others(19): Show TATATATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG01361.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0032 a0001c0001t0001g0032	1	208	0.0048	26	c.597 others(43): Show c.597+2063_597+2064insGTGTGTGTATATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495277	T T	TATATATA others(19): Show TATATATATATATATATATACATACAC	intron_variant intron_variant	MODIFIER	NA18944.hp2 NA18961.hp2 NA18944.hp2 NA18961.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0003 a0002c0002t0002g0004 a0002c0002t0002g0003 a0002c0002t0002g0004	2	209	0.0096	26	c.597 others(43): Show c.597+2063_597+2064insGTGTATGTATATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495277	T T	TATATATA others(19): Show TATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG02735.hp1 NA18945.hp1 others(4): Show HG00741.hp1 HG02735.hp1 NA18945.hp1 NA18945.hp2 NA18993.hp1 NA19082.hp2 NA19083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0035 a0001c0001t0001g0189 a0001c0001t0001g0193 others(4): Show a0001c0001t0001g0035 a0001c0001t0001g0189 a0001c0001t0001g0193 a0001c0001t0002g0206 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0002g0333	7	214	0.0327	26	c.597 others(43): Show c.597+2063_597+2064insGTGTATATATATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125495277	T T	TATATATA others(19): Show TATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03209.hp1 NA18953.hp2 HG03209.hp1 NA18953.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0097 a0001c0001t0001g0354 a0001c0001t0001g0097 a0001c0001t0001g0354	2	209	0.0096	26	c.597 others(43): Show c.597+2063_597+2064insGTATATATATATATATATATATATAT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	5/13			chr3	TogoVar
SNX4_chr3_125441650_125525202	125500799	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0311 a0001c0001t0001g0311	1	172	0.0058	26	c.264 others(43): Show c.264-2631_264-2606dupTTTTTTTTTTTTTTTTTTTTTTTTTT	SNX4	ENSG00000114520.11	transcript	ENST00000251775.9	protein_coding	2/13			chr3	TogoVar
SNX7_chr1_98656721_98765500	98763441	A A	AATATATA others(19): Show AATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00558.hp2 HG02056.hp2 NA20805.hp2 HG00558.hp2 HG02056.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0291 a0001c0001t0001g0301 a0001c0001t0001g0319 a0001c0001t0001g0291 a0001c0001t0001g0301 a0001c0001t0001g0319	3	314	0.0096	26	c.33 others(37): Show c.3310_*3311insATATATATATATATATATATATATAT	SNX7	ENSG00000162627.17	transcript	ENST00000306121.8	protein_coding		2942		chr1	TogoVar
SNX7_chr1_98656721_98765500	98763443	A A	AAAATATA others(19): Show AAAATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02602.hp1 HG02602.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0288 a0001c0001t0001g0288	1	234	0.0043	26	c.33 others(37): Show c.3312_*3313insAAATATATATATATATATATATATAT	SNX7	ENSG00000162627.17	transcript	ENST00000306121.8	protein_coding		2944		chr1	TogoVar
SNX7_chr1_98656721_98765500	98763443	A A	AATATATA others(19): Show AATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19010.hp2 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	234	0.0043	26	c.33 others(37): Show c.3312_*3313insATATATATATATATATATATATATAT	SNX7	ENSG00000162627.17	transcript	ENST00000306121.8	protein_coding		2944		chr1	TogoVar

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