Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZZZ3_chr1_77557416_77687658	77561525	C C	CTTT CTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01952.hp1 HG02083.hp2 HG02273.hp1 others(13): Show HG01952.hp1 HG02083.hp2 HG02273.hp1 HG02738.hp2 HG02809.hp1 HG02896.hp2 HG03139.hp2 HG03209.hp2 NA18941.hp1 NA18972.hp1 NA18993.hp1 NA18999.hp1 NA19030.hp1 NA19066.hp1 NA19088.hp2 NA20300.hp2	a0001 a0008 a0001 a0008	a0001c0001 a0001c0006 a0008c0011 a0001c0001 a0001c0006 a0008c0011	a0001c0001t0001 a0001c0001t0003 a0001c0001t0015 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0015 a0001c0006t0018 a0008c0011t0001	a0001c0001t0001g0079 a0001c0001t0001g0088 a0001c0001t0001g0106 others(13): Show a0001c0001t0001g0079 a0001c0001t0001g0088 a0001c0001t0001g0106 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0173 a0001c0001t0001g0177 a0001c0001t0001g0266 a0001c0001t0001g0329 a0001c0001t0001g0330 a0001c0001t0001g0341 a0001c0001t0003g0259 a0001c0001t0015g0260 a0001c0006t0018g0156 a0008c0011t0001g0148	16	348	0.0460	3	c.41 others(14): Show c.4114_*4115insAAA		ZZZ3	ENSG00000036549.13	transcript	ENST00000370801.8	protein_coding					890		chr1	TogoVar
	ZZZ3_chr1_77557416_77687658	77594921	C C	CAAA CAAA	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02056.hp2 HG02080.hp2 others(26): Show HG02055.hp2 HG02056.hp2 HG02080.hp2 HG02109.hp2 HG02135.hp2 HG02145.hp2 HG02165.hp1 HG02257.hp2 HG02280.hp1 HG02451.hp1 HG02630.hp2 HG02809.hp1 HG02896.hp2 HG02976.hp1 HG03130.hp1 HG03209.hp1 HG03516.hp1 HG03927.hp1 NA18522.hp1 NA18612.hp1 NA18959.hp2 NA18960.hp2 NA18975.hp2 NA19004.hp1 NA19011.hp2 NA19063.hp2 NA19066.hp2 NA19074.hp1 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0015	a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0143 others(25): Show a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0195 a0001c0001t0001g0262 a0001c0001t0001g0265 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0001g0279 a0001c0001t0002g0160 a0001c0001t0003g0258 a0001c0001t0003g0259 a0001c0001t0003g0326 a0001c0001t0003g0331 a0001c0001t0003g0332 a0001c0001t0003g0343 a0001c0001t0015g0260	29	348	0.0833	3	c.150 others(24): Show c.1506-10269_1506-10267dupTTT		ZZZ3	ENSG00000036549.13	transcript	ENST00000370801.8	protein_coding	5/14						chr1	TogoVar
	ZZZ3_chr1_77557416_77687658	77602602	A A	ATTT ATTT	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG01074.hp2 HG01099.hp2 others(39): Show HG00323.hp1 HG01074.hp2 HG01099.hp2 HG01109.hp2 HG01123.hp2 HG01168.hp1 HG01257.hp1 HG01261.hp2 HG01346.hp1 HG01433.hp1 HG01993.hp2 HG02071.hp1 HG02071.hp2 HG02083.hp1 HG02083.hp2 HG02155.hp1 HG02622.hp2 HG02630.hp1 HG02717.hp1 HG02738.hp1 HG02738.hp2 HG03130.hp1 HG03834.hp2 HG03927.hp1 HG03942.hp1 HG03942.hp2 NA18940.hp1 NA18943.hp1 NA18955.hp2 NA18956.hp2 NA18961.hp2 NA18963.hp2 NA18965.hp2 NA18967.hp1 NA18992.hp2 NA19002.hp1 NA19062.hp2 NA19067.hp1 NA19074.hp2 NA19075.hp1 NA19079.hp2 NA20805.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0011 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0011 a0001c0001t0016 a0001c0001t0019 a0002c0002t0001	a0001c0001t0001g0001 a0001c0001t0001g0019 a0001c0001t0001g0020 others(38): Show a0001c0001t0001g0001 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0039 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0051 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0075 a0001c0001t0001g0106 a0001c0001t0001g0109 a0001c0001t0001g0112 a0001c0001t0001g0130 a0001c0001t0001g0143 a0001c0001t0001g0157 a0001c0001t0001g0166 a0001c0001t0001g0176 a0001c0001t0001g0334 a0001c0001t0001g0336 a0001c0001t0001g0337 a0001c0001t0001g0338 a0001c0001t0001g0339 a0001c0001t0001g0340 a0001c0001t0001g0341 a0001c0001t0003g0331 a0001c0001t0011g0064 a0001c0001t0016g0167 a0001c0001t0019g0065 a0002c0002t0001g0122	42	348	0.1207	3	c.150 others(24): Show c.1506-17950_1506-17948dupAAA		ZZZ3	ENSG00000036549.13	transcript	ENST00000370801.8	protein_coding	5/14						chr1	TogoVar
	ZZZ3_chr1_77557416_77687658	77687164	A A	ACCC ACCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00609.hp2 HG01123.hp1 HG02165.hp1 others(18): Show HG00609.hp2 HG01123.hp1 HG02165.hp1 HG02257.hp2 HG02280.hp1 HG02559.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 HG03017.hp1 HG03098.hp2 HG03209.hp1 HG03516.hp1 HG03654.hp2 HG03704.hp2 HG04115.hp2 NA18522.hp1 NA19004.hp1 NA19009.hp2 NA19074.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0015 a0002c0002t0001	a0001c0001t0001g0009 a0001c0001t0001g0164 a0001c0001t0001g0190 others(18): Show a0001c0001t0001g0009 a0001c0001t0001g0164 a0001c0001t0001g0190 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0195 a0001c0001t0001g0265 a0001c0001t0001g0275 a0001c0001t0001g0278 a0001c0001t0002g0006 a0001c0001t0002g0007 a0001c0001t0002g0008 a0001c0001t0002g0270 a0001c0001t0002g0284 a0001c0001t0002g0317 a0001c0001t0003g0257 a0001c0001t0003g0259 a0001c0001t0003g0343 a0001c0001t0005g0243 a0001c0001t0015g0260 a0002c0002t0001g0125	21	348	0.0603	3	c.-49 others(14): Show c.-4983_-4982insGGG		ZZZ3	ENSG00000036549.13	transcript	ENST00000370801.8	protein_coding					4507		chr1	TogoVar